+F Repair protein KO
#
DNA Repair and Recombination Proteins - Fusarium oxysporum
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D FOXG_12820 hypothetical protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D FOXG_01134 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E FOXG_00875 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E FOXG_00833 TDG/mug DNA glycosylase K20813 TDG; thymine-DNA glycosylase [EC:3.2.2.29]
E FOXG_05114 hypothetical protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E FOXG_02789 hypothetical protein K10801 MBD4; methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
E FOXG_01758 N-glycosylase/DNA lyase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
E FOXG_05204 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E FOXG_00033 AP endonuclease 1 K10771 APEX1; AP endonuclease 1 [EC:3.1.11.2]
E FOXG_03614 AP endonuclease 2 K10772 APEX2; AP endonuclease 2 [EC:3.1.11.2]
D Long Patch-BER factors
E DNA polymerase delta complex
F FOXG_01625 DNA polymerase delta subunit 1 K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F FOXG_01636 DNA polymerase delta subunit 2 K02328 POLD2; DNA polymerase delta subunit 2
F FOXG_11369 DNA polymerase delta subunit 3 K03504 POLD3; DNA polymerase delta subunit 3
F FOXG_07738 DNA polymerase delta subunit 4 K03505 POLD4; DNA polymerase delta subunit 4
E DNA polymerase epsilon complex
F FOXG_07773 DNA polymerase epsilon subunit 1 K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
F FOXG_05526 DNA polymerase epsilon subunit 2 K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
F FOXG_00208 hypothetical protein K02326 POLE3; DNA polymerase epsilon subunit 3 [EC:2.7.7.7]
E FOXG_00337 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E FOXG_12720 flap endonuclease-1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E FOXG_09448 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Short Patch-BER factors
D Other BER factors
E FOXG_08536 tyrosyl-DNA phosphodiesterase 1 K10862 TDP1; tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
E FOXG_01657 aprataxin K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E FOXG_04937 hypothetical protein K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78]
E FOXG_07574 poly(ADP)-ribose polymerase K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
E FOXG_12427 poly [ADP-ribose] polymerase K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
E FOXG_14110 poly [ADP-ribose] polymerase K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
F FOXG_03450 hypothetical protein K10838 XPC; xeroderma pigmentosum group C-complementing protein
F FOXG_08438 xeroderma pigmentosum group C-complementing protein K10838 XPC; xeroderma pigmentosum group C-complementing protein
F FOXG_02057 UV excision repair protein Rad23 K10839 RAD23; UV excision repair protein RAD23
E Cul4-DDB2 complex
F FOXG_10518 RING-box protein 1 K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F FOXG_09372 hypothetical protein K10609 CUL4; cullin 4
F FOXG_08454 DNA damage-binding protein 1 K10610 DDB1; DNA damage-binding protein 1
E NER4 complex
F FOXG_07601 hypothetical protein K15082 RAD7; DNA repair protein RAD7
F FOXG_07602 adenosinetriphosphatase K15083 RAD16; DNA repair protein RAD16
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
F FOXG_00887 DNA-directed RNA polymerase II subunit RPB1 K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F FOXG_10639 DNA-directed RNA polymerase II subunit RPB2 K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F FOXG_11265 DNA-directed RNA polymerase II subunit RPB3 K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
F FOXG_00264 DNA-directed RNA polymerase II subunit RPB4 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F FOXG_08309 DNA-directed RNA polymerase I, II, and III subunit RPABC1 K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F FOXG_02257 DNA-directed RNA polymerase I, II, and III subunit RPABC2 K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F FOXG_00169 DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F FOXG_11352 DNA-directed RNA polymerase I, II, and III subunit RPABC3 K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F FOXG_02429 DNA-directed RNA polymerase II subunit RPB9 K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F FOXG_00863 DNA-directed RNA polymerase I, II, and III subunit RPABC5 K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F FOXG_02006 DNA-directed RNA polymerase II subunit RPB11 K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
F FOXG_20578 DNA-directed RNA polymerase I, II, and III subunit RPABC4 K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E Cul4-CSA complex
F FOXG_10518 RING-box protein 1 K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F FOXG_09372 hypothetical protein K10609 CUL4; cullin 4
F FOXG_08454 DNA damage-binding protein 1 K10610 DDB1; DNA damage-binding protein 1
F FOXG_05411 DNA excision repair protein ERCC-8 K10570 ERCC8; DNA excision repair protein ERCC-8
E Other TCR factor
F FOXG_10569 DNA excision repair protein ERCC-6 K10841 ERCC6; DNA excision repair protein ERCC-6
F FOXG_01417 hypothetical protein K25829 ELOF1; transcription elongation factor 1
D TFIIH complex
E FOXG_13133 DNA excision repair protein ERCC-3 K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E FOXG_02136 DNA excision repair protein ERCC-3 K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E FOXG_13947 DNA repair helicase rad15 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E FOXG_13931 transcription initiation factor TFIIH subunit 1 K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E FOXG_07707 transcription initiation factor TFIIH subunit 2 K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E FOXG_12793 transcription initiation factor TFIIH subunit 3 K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E FOXG_02969 transcription initiation factor TFIIH subunit 4 K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E FOXG_05329 RNA polymerase II transcription factor B subunit 5 K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E FOXG_01468 CMGC/CDK/CDK7 protein kinase K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E FOXG_04475 cyclin H K06634 CCNH; cyclin H
E FOXG_05765 CDK-activating kinase assembly factor MAT1 K10842 MNAT1; CDK-activating kinase assembly factor MAT1
D RPA (replication factor A)
E FOXG_05284 replication factor A1 K07466 RFA1; replication factor A1
E FOXG_08342 replication factor A2 K10739 RFA2; replication factor A2
D Other NER factors
E FOXG_11041 DNA-repair protein complementing XP-A cells K10847 XPA; DNA-repair protein complementing XP-A cells
E FOXG_05982 DNA excision repair protein ERCC-1 K10849 ERCC1; DNA excision repair protein ERCC-1
E FOXG_03142 DNA excision repair protein ERCC-4 K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E FOXG_00873 DNA excision repair protein ERCC-5 K10846 ERCC5; DNA excision repair protein ERCC-5
E FOXG_09448 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E FOXG_09289 hypothetical protein K15075 MET18; DNA repair/transcription protein MET18/MMS19
E FOXG_00698 Cullin 3 K03869 CUL3; cullin 3
E FOXG_00765 transcription elongation factor B, polypeptide 1 K03872 ELOC; elongin-C
E FOXG_00272 hypothetical protein K15077 ELA1; elongin-A
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E FOXG_08082 DNA mismatch repair protein msh-2 K08735 MSH2; DNA mismatch repair protein MSH2
E FOXG_01691 DNA mismatch repair protein MSH3 K08736 MSH3; DNA mismatch repair protein MSH3
E FOXG_15416 DNA mismatch repair protein MSH6 K08737 MSH6; DNA mismatch repair protein MSH6
D MutL homologs
E FOXG_08337 hypothetical protein K08734 MLH1; DNA mismatch repair protein MLH1
E FOXG_04204 DNA mismatch repair protein PMS2 K10858 PMS2; DNA mismatch repair protein PMS2
E FOXG_11087 DNA mismatch repair protein MLH3 K08739 MLH3; DNA mismatch repair protein MLH3
D DNA polymerase delta complex
E FOXG_01625 DNA polymerase delta subunit 1 K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E FOXG_01636 DNA polymerase delta subunit 2 K02328 POLD2; DNA polymerase delta subunit 2
E FOXG_11369 DNA polymerase delta subunit 3 K03504 POLD3; DNA polymerase delta subunit 3
E FOXG_07738 DNA polymerase delta subunit 4 K03505 POLD4; DNA polymerase delta subunit 4
D RPA (replication factor A)
E FOXG_05284 replication factor A1 K07466 RFA1; replication factor A1
E FOXG_08342 replication factor A2 K10739 RFA2; replication factor A2
D RFC (replication factor C)
E FOXG_00737 replication factor C subunit 1 K10754 RFC1; replication factor C subunit 1
E FOXG_00180 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
E FOXG_01597 replication factor C subunit 4 K10755 RFC2_4; replication factor C subunit 2/4
E FOXG_07733 replication factor C subunit 3/5 K10756 RFC3_5; replication factor C subunit 3/5
E FOXG_00735 replication factor C subunit 5 K10756 RFC3_5; replication factor C subunit 3/5
D Other MMR factors
E FOXG_00337 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E FOXG_01765 exonuclease 1 K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E FOXG_09448 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E FOXG_04062 WD repeat-containing protein K24755 WDR76; WD repeat-containing protein 76
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
E FOXG_11026 double-strand break repair protein MRE11 K10865 MRE11; double-strand break repair protein MRE11
E FOXG_11027 double-strand break repair protein MRE11 K10865 MRE11; double-strand break repair protein MRE11
E FOXG_01038 DNA repair protein RAD50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
E FOXG_11026 double-strand break repair protein MRE11 K10865 MRE11; double-strand break repair protein MRE11
E FOXG_11027 double-strand break repair protein MRE11 K10865 MRE11; double-strand break repair protein MRE11
E FOXG_01038 DNA repair protein RAD50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D BRCA complex
E FOXG_00234 DNA repair protein rhp51 K04482 RAD51; DNA repair protein RAD51
D RecA family proteins
E FOXG_00234 DNA repair protein rhp51 K04482 RAD51; DNA repair protein RAD51
E FOXG_00801 DNA repair protein RAD57 K10958 RAD57; DNA repair protein RAD57
D Rad52 family proteins
E FOXG_05249 DNA repair and recombination protein RAD52 K10873 RAD52; DNA repair and recombination protein RAD52
D Rad54 family proteins
E FOXG_03703 DNA repair protein rhp54 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
D RecQ family DNA helicases
E FOXG_00504 bloom syndrome protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
D Bloom's syndrome complex (BTR)
E FOXG_00504 bloom syndrome protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E FOXG_02220 DNA topoisomerase III K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E FOXG_08073 hypothetical protein K15364 NCE4; RecQ-mediated genome instability protein 1
D RPA (replication factor A)
E FOXG_05284 replication factor A1 K07466 RFA1; replication factor A1
E FOXG_08342 replication factor A2 K10739 RFA2; replication factor A2
D Protein phosphatase 4
E FOXG_08498 hypothetical protein K17491 SMEK; protein phosphatase 4 regulatory subunit 3
D AP-5 complex
D SMC5-SMC6 complex
E FOXG_03097 hypothetical protein K22803 SMC5; structural maintenance of chromosomes protein 5
E FOXG_08150 hypothetical protein K22804 SMC6; structural maintenance of chromosomes protein 6
E FOXG_06263 hypothetical protein K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27]
E FOXG_03253 hypothetical protein K22756 NSMCE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-]
E FOXG_03328 hypothetical protein K22825 NSMCE4; non-structural maintenance of chromosomes element 4
D Other HR factors
E FOXG_11018 hypothetical protein K10882 EME1; crossover junction endonuclease EME1 [EC:3.1.22.-]
E FOXG_02005 hypothetical protein K20777 EXD2; exonuclease 3'-5' domain-containing protein 2 [EC:3.1.11.1]
E FOXG_00257 crossover junction endonuclease MUS81 K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-]
E FOXG_20592 26 proteasome complex subunit DSS1 K10881 SHFM1; 26 proteasome complex subunit DSS1
E FOXG_07542 hypothetical protein K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E FOXG_13849 hypothetical protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E FOXG_17763 mortality factor 4-like protein 1 K11339 MORF4L1; mortality factor 4-like protein 1
E FOXG_08163 adenosinetriphosphatase K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-]
E FOXG_01067 hypothetical protein K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E FOXG_00314 hypothetical protein K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E FOXG_00507 fanconi anemia group M protein K14635 MPH1; ATP-dependent DNA helicase MPH1 [EC:5.6.2.4]
C NHEJ (non-homologous end-joining)
D DNA-PK complex
E FOXG_06386 ATP-dependent DNA helicase II subunit 1 K10884 XRCC6; ATP-dependent DNA helicase 2 subunit 1
E FOXG_02215 ATP-dependent DNA helicase 2 subunit 2 K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2
D MRX complex
E FOXG_11026 double-strand break repair protein MRE11 K10865 MRE11; double-strand break repair protein MRE11
E FOXG_11027 double-strand break repair protein MRE11 K10865 MRE11; double-strand break repair protein MRE11
E FOXG_01038 DNA repair protein RAD50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D DNA Ligase 4 complex
E FOXG_01794 hypothetical protein K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
E FOXG_11480 DNA ligase 4 K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
D X-family DNA polymerases
E FOXG_04238 DNA polymerase IV K10981 POL4; DNA polymerase IV [EC:2.7.7.7]
E FOXG_00425 DNA polymerase IV K10981 POL4; DNA polymerase IV [EC:2.7.7.7]
D Other NHEJ factors
E FOXG_01657 aprataxin K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E FOXG_06402 hypothetical protein K10887 DCLRE1C; DNA cross-link repair 1C protein [EC:3.1.-.-]
E FOXG_15135 hypothetical protein K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
E FOXG_15136 hypothetical protein K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
E FOXG_14344 hypothetical protein K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
E FOXG_14345 hypothetical protein K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
E FOXG_13356 hypothetical protein K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
E FOXG_01639 hypothetical protein K11511 APITD1; centromere protein S
E FOXG_07728 hypothetical protein K15360 STRA13; centromere protein X
D Bloom's syndrome complex (BTR)
E FOXG_00504 bloom syndrome protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E FOXG_02220 DNA topoisomerase III K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E FOXG_08073 hypothetical protein K15364 NCE4; RecQ-mediated genome instability protein 1
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
E FOXG_01762 hypothetical protein K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E FOXG_00234 DNA repair protein rhp51 K04482 RAD51; DNA repair protein RAD51
E FOXG_00694 hypothetical protein K11137 TELO2; telomere length regulation protein
E FOXG_13885 hypothetical protein K15361 WDR48; WD repeat-containing protein 48
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
E FOXG_08450 hypothetical protein K23314 WRAP53; telomerase Cajal body protein 1
E FOXG_02106 hypothetical protein K24752 WDR70; WD repeat-containing protein 70
E FOXG_04062 WD repeat-containing protein K24755 WDR76; WD repeat-containing protein 76
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D FOXG_03645 DNA polymerase eta subunit K03509 POLH; DNA polymerase eta [EC:2.7.7.7]
D FOXG_08037 DNA polymerase iota subunit K03510 POLI; DNA polymerase iota [EC:2.7.7.7]
D FOXG_11309 DNA polymerase kappa subunit K03511 POLK; DNA polymerase kappa [EC:2.7.7.7]
D FOXG_00356 DNA repair protein REV1 K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-]
C B-family DNA polymerases
D FOXG_03622 DNA polymerase zeta subunit K02350 REV3L; DNA polymerase zeta [EC:2.7.7.7]
C A-family DNA polymerase
C Rad6 epistasis group
D FOXG_08598 ubiquitin-conjugating enzyme E2 2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D FOXG_11368 E3 ubiquitin-protein ligase RAD18 K10627 RAD18; E3 ubiquitin-protein ligase RAD18 [EC:2.3.2.27]
D FOXG_10321 DNA repair protein RAD5 K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D FOXG_08225 hypothetical protein K15711 SMARCA3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
D FOXG_05943 ubiquitin-conjugating enzyme E2 K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D FOXG_03370 ubiquitin-conjugating enzyme E2 35 K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
C Other TLS factors
D FOXG_00337 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
D FOXG_03719 hypothetical protein K26957 GCNA; germ cell nuclear acidic protein
B Check point factors
C Rad9-Hus1-Rad1 complex
D FOXG_20545 hypothetical protein K10994 RAD9A; cell cycle checkpoint control protein RAD9A [EC:3.1.11.2]
D FOXG_07970 HUS1 checkpoint protein K10903 HUS1; HUS1 checkpoint protein
D FOXG_01178 cell cycle checkpoint protein K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C HRAD17(Rad24)-RFC complex
D FOXG_00420 cell cycle checkpoint protein K06662 HRAD17; cell cycle checkpoint protein
D FOXG_00180 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
D FOXG_01597 replication factor C subunit 4 K10755 RFC2_4; replication factor C subunit 2/4
D FOXG_07733 replication factor C subunit 3/5 K10756 RFC3_5; replication factor C subunit 3/5
D FOXG_00735 replication factor C subunit 5 K10756 RFC3_5; replication factor C subunit 3/5
C Rad17-Mec3-Ddc1 complex
D FOXG_01178 cell cycle checkpoint protein K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C FPC (fork protection complex)
D FOXG_02010 replication fork protection complex subunit Tof1/Swi1 K10997 TIMELESS; replication fork protection complex subunit TIMELESS/Tof1/Swi1
D FOXG_15624 replication fork protection complex subunit Csm3/Swi3 K10998 TIPIN; replication fork protection complex subunit TIPIN/Csm3/Swi3
D FOXG_05485 hypothetical protein K11272 MRC1; mediator of replication checkpoint protein 1
C Triple T complex
D FOXG_00694 hypothetical protein K11137 TELO2; telomere length regulation protein
D FOXG_09318 hypothetical protein K20403 TTI1; TELO2-interacting protein 1
C BAG6-UBL4A-GET4 complex
D FOXG_07994 hypothetical protein K23388 UBL4; ubiquitin-like protein 4
D FOXG_01585 hypothetical protein K23387 GET4; golgi to ER traffic protein 4
C Other check point factors
D FOXG_18482 hypothetical protein K06640 ATR; serine/threonine-protein kinase ATR [EC:2.7.11.1]
D FOXG_18483 hypothetical protein K06640 ATR; serine/threonine-protein kinase ATR [EC:2.7.11.1]
D FOXG_20040 serine/threonine-protein kinase TEL1 K04728 ATM; serine-protein kinase ATM [EC:2.7.11.1]
D FOXG_11222 CAMK/CAMKL/CHK1 protein kinase K02216 CHEK1; serine/threonine-protein kinase CHEK1 [EC:2.7.11.1]
D FOXG_01680 CAMK/RAD53 protein kinase K06641 CHEK2; serine/threonine-protein kinase CHEK2 [EC:2.7.11.1]
D FOXG_00489 hypothetical protein K02555 MIH1; M-phase inducer tyrosine phosphatase [EC:3.1.3.48]
D FOXG_01979 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein K06630 YWHAE; 14-3-3 protein epsilon
D FOXG_00146 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein K06630 YWHAE; 14-3-3 protein epsilon
D FOXG_05144 wee/wee-unclassified protein kinase K03114 SWE1; mitosis inhibitor protein kinase SWE1 [EC:2.7.11.1]
D FOXG_09518 hypothetical protein K24664 FKH; forkhead protein FKH
D FOXG_12912 vacuolar protein sorting-associated protein 4 K12196 VPS4; vacuolar protein-sorting-associated protein 4
D FOXG_08018 hypothetical protein K25059 SDE2; replication stress response regulator SDE2
B Other factors with a suspected DNA repair function
C DNA polymerases
D FOXG_00490 hypothetical protein K02331 POL5; DNA polymerase phi [EC:2.7.7.7]
C Nucleases
D FOXG_00696 hypothetical protein K15340 DCLRE1A; DNA cross-link repair 1A protein
D FOXG_08386 hypothetical protein K17815 EXO5; exonuclease V [EC:3.1.-.-]
D FOXG_15179 hypothetical protein K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D FOXG_03299 hypothetical protein K05986 NUCS; nuclease S1 [EC:3.1.30.1]
C Helicases
D FOXG_05137 hypothetical protein K20098 ERCC6L2; DNA excision repair protein ERCC-6-like 2 [EC:5.6.2.-]
C PSO4 complex
D FOXG_10343 pre-mRNA-processing factor 19 K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D FOXG_08250 pre-mRNA-splicing factor cef-1 K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D FOXG_05518 hypothetical protein K12861 BCAS2; pre-mRNA-splicing factor SPF27
D FOXG_00047 pre-mRNA-splicing factor prp46 K12862 PLRG1; pleiotropic regulator 1
C Modulation of nucleotide pools
D FOXG_05804 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D FOXG_14045 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D FOXG_12494 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D FOXG_00335 dUTP pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D FOXG_07921 hypothetical protein K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D FOXG_09492 ribonucleoside-diphosphate reductase subunit M2 K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D FOXG_12820 hypothetical protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D FOXG_01134 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E FOXG_00875 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E FOXG_05318 DNA-3-methyladenine glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E FOXG_05114 hypothetical protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E FOXG_03249 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E FOXG_05204 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D RecJ
D DNA ligase
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E FOXG_03201 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
D Other MMR factors
E FOXG_03201 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
D RecFOR pathway proteins
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
E Facilitator
E Supressor
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D FOXG_05804 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D FOXG_14045 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D FOXG_12494 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D FOXG_00335 dUTP pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024