+F Repair protein KO #

  DNA Repair and Recombination Proteins - Gemmatimonas phototrophica

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D GEMMAAP_07395 hypothetical protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D GEMMAAP_13940 hypothetical protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E GEMMAAP_04065 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E GEMMAAP_04860 hypothetical protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E GEMMAAP_03335 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D GEMMAAP_16230 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D GEMMAAP_02835 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D GEMMAAP_01600 cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D GEMMAAP_07395 hypothetical protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D GEMMAAP_13940 hypothetical protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D GEMMAAP_19050 hypothetical protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] C BER (base exicision repair) D DNA glycosylases E GEMMAAP_19685 DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E GEMMAAP_02555 hypothetical protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E GEMMAAP_16245 hypothetical protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E GEMMAAP_04065 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E GEMMAAP_04860 hypothetical protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E GEMMAAP_12280 hypothetical protein K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E GEMMAAP_04090 hypothetical protein K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E GEMMAAP_03335 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E GEMMAAP_11295 hypothetical protein K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E GEMMAAP_15675 hypothetical protein K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E GEMMAAP_09810 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E GEMMAAP_04770 hypothetical protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E GEMMAAP_11355 hypothetical protein K03701 uvrA; excinuclease ABC subunit A E GEMMAAP_04875 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E GEMMAAP_10145 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E GEMMAAP_04525 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E GEMMAAP_08395 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E GEMMAAP_04770 hypothetical protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F GEMMAAP_05000 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F GEMMAAP_05005 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) C MMR (mismatch excision repair) D Mismatch and loop recognition factors E GEMMAAP_19695 hypothetical protein K03555 mutS; DNA mismatch repair protein MutS E GEMMAAP_09825 hypothetical protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E GEMMAAP_08255 hypothetical protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E GEMMAAP_09705 hypothetical protein K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E GEMMAAP_09700 hypothetical protein K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E GEMMAAP_04510 hypothetical protein K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E GEMMAAP_00010 hypothetical protein K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E GEMMAAP_19705 hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E GEMMAAP_11455 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E GEMMAAP_13060 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D DNA ligase E GEMMAAP_04770 hypothetical protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E GEMMAAP_04525 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E GEMMAAP_08395 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E GEMMAAP_10120 hypothetical protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E GEMMAAP_16310 hypothetical protein K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E GEMMAAP_16315 hypothetical protein K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E GEMMAAP_16305 hypothetical protein K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E GEMMAAP_09965 recombinase RecA K03553 recA; recombination protein RecA E GEMMAAP_03950 hypothetical protein K03550 ruvA; holliday junction DNA helicase RuvA E GEMMAAP_03920 ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E GEMMAAP_03955 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E GEMMAAP_05375 hypothetical protein K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E GEMMAAP_04710 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E GEMMAAP_04705 hypothetical protein K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E GEMMAAP_09965 recombinase RecA K03553 recA; recombination protein RecA E GEMMAAP_09120 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E GEMMAAP_04805 hypothetical protein K03629 recF; DNA replication and repair protein RecF E GEMMAAP_07820 hypothetical protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E GEMMAAP_09810 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E GEMMAAP_06250 recombinase RecR K06187 recR; recombination protein RecR E GEMMAAP_09680 hypothetical protein K03631 recN; DNA repair protein RecN (Recombination protein N) E GEMMAAP_03950 hypothetical protein K03550 ruvA; holliday junction DNA helicase RuvA E GEMMAAP_03920 ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E GEMMAAP_03955 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E GEMMAAP_04710 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E GEMMAAP_04705 hypothetical protein K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F GEMMAAP_13770 hypothetical protein K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F GEMMAAP_03140 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F GEMMAAP_04800 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F GEMMAAP_12735 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F GEMMAAP_09810 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F GEMMAAP_06250 recombinase RecR K06187 recR; recombination protein RecR F GEMMAAP_04770 hypothetical protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F GEMMAAP_09065 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F GEMMAAP_05635 helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F GEMMAAP_11355 hypothetical protein K03701 uvrA; excinuclease ABC subunit A F GEMMAAP_04875 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F GEMMAAP_10145 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D GEMMAAP_12920 hypothetical protein K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D GEMMAAP_09965 recombinase RecA K03553 recA; recombination protein RecA D GEMMAAP_09335 hypothetical protein K01356 lexA; repressor LexA [EC:3.4.21.88] D GEMMAAP_09680 hypothetical protein K03631 recN; DNA repair protein RecN (Recombination protein N) D GEMMAAP_14200 hypothetical protein K14161 imuB; protein ImuB D GEMMAAP_14265 hypothetical protein K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D GEMMAAP_10120 hypothetical protein K03111 ssb; single-strand DNA-binding protein D GEMMAAP_09960 hypothetical protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D GEMMAAP_07160 hypothetical protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D GEMMAAP_17365 DEAD/DEAH box helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D GEMMAAP_16230 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D GEMMAAP_02835 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D GEMMAAP_05475 response regulator SirA K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others D GEMMAAP_12365 hypothetical protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024