+E Transcription factors KO
#
Transcription Factors - Halocella sp. SP3-1
%
!
AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
#
AProkaryotic type
B Helix-turn-helix
C AraC family
D D7D81_03450 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator
D D7D81_08295 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator
D D7D81_14745 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator
D D7D81_14760 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator
D D7D81_03445 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator
D D7D81_07690 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator
D D7D81_07705 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator
C LysR family
D D7D81_09080 LysR family transcriptional regulator K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
C DeoR family
D D7D81_04540 DeoR/GlpR transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D D7D81_14885 DeoR/GlpR transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D D7D81_02600 DeoR/GlpR transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D D7D81_04760 spoIIID; sporulation transcriptional regulator SpoIIID K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D
D D7D81_06475 transcriptional regulator K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator
C LacI family
D D7D81_00155 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D D7D81_17600 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D D7D81_00725 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D D7D81_09450 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D D7D81_18205 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D D7D81_01110 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D D7D81_18625 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D D7D81_01395 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D D7D81_01510 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D D7D81_05735 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D D7D81_18655 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D D7D81_18765 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D D7D81_18795 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D D7D81_14910 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D D7D81_06315 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D D7D81_15185 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D D7D81_07105 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D D7D81_16455 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D D7D81_03620 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D D7D81_04265 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D D7D81_03875 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D D7D81_00380 LacI family transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D D7D81_17875 LacI family transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D D7D81_03270 LacI family transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D D7D81_18180 LacI family transcriptional regulator K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
C GntR family
D D7D81_08770 GntR family transcriptional regulator K02103 araR; GntR family transcriptional regulator, arabinose operon transcriptional repressor
D D7D81_15640 GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D D7D81_14830 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D D7D81_18145 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D D7D81_02180 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D D7D81_02950 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D D7D81_03080 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D D7D81_01765 FadR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D D7D81_03685 FadR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D D7D81_01270 FadR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D D7D81_01460 FadR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D D7D81_06960 FadR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
C TetR/AcrR family
C Lrp/AsnC family
D D7D81_11720 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
C LuxR family
C MarR family
D D7D81_07580 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D D7D81_00560 MerR family transcriptional regulator K03713 glnR; MerR family transcriptional regulator, glutamine synthetase repressor
C Fur family
D D7D81_15250 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D D7D81_08750 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D D7D81_14485 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D D7D81_16100 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D D7D81_11050 transcriptional repressor K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
C IclR family
D D7D81_01140 IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D D7D81_05495 IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D D7D81_17230 IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D D7D81_04555 IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D D7D81_18270 IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D D7D81_03670 IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D D7D81_03760 IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D D7D81_03795 IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
C CRP/FNR family
D D7D81_18030 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D D7D81_04445 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D D7D81_14480 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D D7D81_11695 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
C Rrf2 family
D D7D81_10935 Rrf2 family transcriptional regulator K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
C ArsR family
D D7D81_07895 transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D D7D81_07525 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D D7D81_08650 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D D7D81_16495 ArsR family transcriptional regulator K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
C XRE family
D D7D81_09530 XRE family transcriptional regulator K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
C PadR family
D D7D81_07880 PadR family transcriptional regulator K26739 padR; PadR family transcriptional regulator, phenolic acid-responsive transcriptional regulator
D D7D81_08510 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
C Other families
D D7D81_15810 MarR family transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D D7D81_15845 metal-dependent transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D D7D81_07850 MurR/RpiR family transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D D7D81_11365 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D D7D81_00065 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D D7D81_16325 PAS domain-containing protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D D7D81_00010 hypothetical protein K02647 cdaR; carbohydrate diacid regulator
D D7D81_15905 PAS domain S-box protein K06714 rocR; arginine utilization regulatory protein
D D7D81_17400 redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor
D D7D81_17775 redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor
D D7D81_03365 redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor
D D7D81_13735 codY; GTP-sensing pleiotropic transcriptional regulator CodY K03706 codY; transcriptional pleiotropic repressor
D D7D81_07980 XRE family transcriptional regulator K07727 K07727; putative transcriptional regulator
D D7D81_16775 XRE family transcriptional regulator K07729 K07729; putative transcriptional regulator
D D7D81_11940 XRE family transcriptional regulator K07729 K07729; putative transcriptional regulator
D D7D81_04100 XRE family transcriptional regulator K07729 K07729; putative transcriptional regulator
D D7D81_04195 XRE family transcriptional regulator K07729 K07729; putative transcriptional regulator
D D7D81_17185 helix-turn-helix domain-containing protein K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
D D7D81_03255 nikR; nickel-responsive transcriptional regulator NikR K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
D D7D81_18920 CopG family transcriptional regulator K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI
C Other families
B Other transcription factors
C BglG family
D D7D81_17325 PRD domain-containing protein K03488 licT; beta-glucoside operon transcriptional antiterminator
D D7D81_02230 PRD domain-containing protein K03480 glcT; transcriptional antiterminator
D D7D81_09290 transcription antiterminator K03483 mtlR; mannitol operon transcriptional activator
D D7D81_07195 PRD domain-containing protein K03483 mtlR; mannitol operon transcriptional activator
D D7D81_05600 PRD domain-containing protein K03491 licR; probable licABCH operon transcriptional regulator
C Others
D D7D81_15900 hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D D7D81_07805 transcriptional regulator K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D D7D81_14290 AbrB/MazE/SpoVT family DNA-binding domain-containing protein K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D D7D81_14490 AbrB/MazE/SpoVT family DNA-binding domain-containing protein K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D D7D81_00505 spoVT; stage V sporulation protein T K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T
D D7D81_02670 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D D7D81_02680 noc; nucleoid occlusion protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D D7D81_19315 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D D7D81_09445 glycerol-3-phosphate responsive antiterminator K02443 glpP; glycerol uptake operon antiterminator
D D7D81_14165 argR; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D D7D81_07060 ROK family transcriptional regulator K02565 nagC; N-acetylglucosamine repressor
D D7D81_10585 hrcA; heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D D7D81_19345 CtsR family transcriptional regulator K03708 ctsR; transcriptional regulator of stress and heat shock response
D D7D81_00655 PspC domain-containing protein K03973 pspC; phage shock protein C
D D7D81_05795 sugar-binding transcriptional regulator K05311 cggR; central glycolytic genes regulator
D D7D81_17310 mtrB; trp RNA-binding attenuation protein MtrB K06285 mtrB; transcription attenuation protein (tryptophan RNA-binding attenuator protein)
D D7D81_11650 pyrR; bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D D7D81_11180 nrdR; transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR
D D7D81_11080 mraZ; transcriptional regulator MraZ K03925 mraZ; transcriptional regulator MraZ
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024
#
Classification taken and modified from TRANSFAC 7.0