+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Haloarcula hispanica ATCC 33960
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AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
D Cap binding complex
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
D Pre-mRNA cleavage factor IIm (CFIIm)
D Cleavage and polyadenylation specificity factor (CPSF) complex
D Cleavage stimulation factor (CSTF) complex
D U7-dependent histone pre-mRNA processing factors
D DRB sensitivity inducing factor (DSIF) complex
E HAH_0109 rpoE''; DNA-directed RNA polymerase subunit E'' K15171 SUPT4H1; transcription elongation factor SPT4
E HAH_1348 nusG; transcription antitermination protein NusG K15172 SUPT5H; transcription elongation factor SPT5
D N6-methyltransferase complex
D Poly(A) addition factors
D Negative regulators of mRNA 3' end processing
C Other processing factors
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
D TREX complex
D TREX-2 complex
D Nuclear pore complex
D Ran-mediated transport factors
E HAH_2099 cdc48d; cell division control protein 48 / AAA family ATPase, CDC48 subfamily K13525 VCP; transitional endoplasmic reticulum ATPase
E HAH_1437 cdc48b; cell division control protein 48 / AAA family ATPase, CDC48 subfamily K13525 VCP; transitional endoplasmic reticulum ATPase
D eIF4F and regulatory proteins
D APOBEC1-ACF complex
D Other transport factors
E HAH_1595 pelA; cell division protein pelota K06965 PELO; protein pelota
C Surveillance factors
D Surveillance complex
E HAH_0429 erf1; peptide chain release factor 1 K03265 ETF1; peptide chain release factor subunit 1
D Protein phosphatase 2A
D Other surveillance factors
C Factors involved in mRNA localization
D Cargo complex
D Factors that have mRNA localization signals
D Trans-acting binding proteins
E HAH_2841 tef1A; translation elongation factor EF-1, subunit alpha K03231 EEF1A; elongation factor 1-alpha
E HAH_2161 gbp1; putative GTP-binding protein / protein synthesis factor K03231 EEF1A; elongation factor 1-alpha
D Other mRNA localization factors
C mRNA cycle factors
D Common to processing body (P body) and stress granule
D P-body specific factors
D Stress granule specific factors
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
D Lsm complex
D 5' exonucleases
D Other 5'-3' decay factors
C 3'-5' decay
D Core exosome factors
D Exosome cofactors
D TRAMP complex
D Ski complex
D Ccr4-NOT complex
D Pan complex
D Other 3'-5' decay factors
C Other degradation factors
D RNases
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AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E HAH_0837 hydrolase K12574 rnj; ribonuclease J [EC:3.1.-.-]
E HAH_2566 vacB; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D Helicases
D Other RNA degradosome components
E HAH_0828 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C Other RNA degradation factors
D Chaperones
E HAH_4198 dnaK2; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
E HAH_0579 dnaK1; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D Others
E HAH_5251 ppk; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
D Cofactors
D Others
E HAH_0043 rad24a/uvrB domain-containing protein K03725 K03725; putative ATP-dependent RNA helicase [EC:5.6.2.-]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024