+D GENES KO #

  KEGG Orthology (KO) - Hymenobacter oligotrophus

% ! A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:hyh00010] D D3Y59_11305 hypothetical protein K13810 tal-pgi; transaldolase / glucose-6-phosphate isomerase [EC:2.2.1.2 5.3.1.9] D D3Y59_02930 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D D3Y59_05570 class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D D3Y59_04330 fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D D3Y59_17170 class I fructose-bisphosphate aldolase K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D D3Y59_09305 class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D D3Y59_15570 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D D3Y59_03255 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D D3Y59_07430 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D D3Y59_13085 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D D3Y59_16295 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D D3Y59_09340 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D D3Y59_13660 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D D3Y59_06125 pyruvate dehydrogenase complex E1 component subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D D3Y59_01615 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D D3Y59_11685 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D3Y59_08060 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D3Y59_09915 NAD(P)-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D D3Y59_11585 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D D3Y59_05260 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D D3Y59_12650 galactose mutarotase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D D3Y59_07410 HAD family phosphatase K20866 yihX; glucose-1-phosphatase [EC:3.1.3.10] D D3Y59_01935 phospho-sugar mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D D3Y59_03780 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] C 00020 Citrate cycle (TCA cycle) [PATH:hyh00020] D D3Y59_04820 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D D3Y59_07685 aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3] D D3Y59_06355 NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D D3Y59_09885 NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D D3Y59_13965 isocitrate/isopropylmalate dehydrogenase family protein K00030 IDH3; isocitrate dehydrogenase (NAD+) [EC:1.1.1.41] D D3Y59_11785 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D D3Y59_11780 odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D D3Y59_05410 2-oxo acid dehydrogenase subunit E2 K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D D3Y59_11685 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D3Y59_08060 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D3Y59_09750 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D D3Y59_07475 ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D D3Y59_07745 fumarate reductase/succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D D3Y59_07750 succinate dehydrogenase/fumarate reductase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D D3Y59_07740 succinate dehydrogenase K00241 sdhC; succinate dehydrogenase cytochrome b subunit D D3Y59_13115 fumC; class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D D3Y59_08930 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D D3Y59_06995 malate:quinone oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4] D D3Y59_06555 pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1] D D3Y59_03780 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D D3Y59_13660 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D D3Y59_06125 pyruvate dehydrogenase complex E1 component subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D D3Y59_01615 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] C 00030 Pentose phosphate pathway [PATH:hyh00030] D D3Y59_11305 hypothetical protein K13810 tal-pgi; transaldolase / glucose-6-phosphate isomerase [EC:2.2.1.2 5.3.1.9] D D3Y59_04445 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D D3Y59_02970 transketolase family protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D D3Y59_02980 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D D3Y59_06305 fsa; fructose-6-phosphate aldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] D D3Y59_13370 rpiB; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D D3Y59_16385 deoC; deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D D3Y59_01935 phospho-sugar mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D D3Y59_09435 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D D3Y59_03155 glucose 1-dehydrogenase K00034 gdh; glucose 1-dehydrogenase [EC:1.1.1.47] D D3Y59_17170 class I fructose-bisphosphate aldolase K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D D3Y59_09305 class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D D3Y59_05570 class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D D3Y59_04330 fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D D3Y59_02930 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] C 00040 Pentose and glucuronate interconversions [PATH:hyh00040] D D3Y59_07340 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D D3Y59_09150 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D D3Y59_04445 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] C 00051 Fructose and mannose metabolism [PATH:hyh00051] D D3Y59_11540 carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D D3Y59_11310 phosphoheptose isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D D3Y59_15275 glmM; phosphoglucosamine mutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D D3Y59_17030 mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D D3Y59_07320 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D D3Y59_07325 GDP-L-fucose synthase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D D3Y59_02930 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D D3Y59_05570 class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D D3Y59_04330 fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D D3Y59_17170 class I fructose-bisphosphate aldolase K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D D3Y59_09305 class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D D3Y59_15570 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D D3Y59_13370 rpiB; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] C 00052 Galactose metabolism [PATH:hyh00052] D D3Y59_12650 galactose mutarotase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D D3Y59_12635 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D D3Y59_12630 UDP-glucose--hexose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D D3Y59_14140 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D D3Y59_01935 phospho-sugar mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D D3Y59_16370 glf; UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9] D D3Y59_02930 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D D3Y59_00820 DUF4968 domain-containing protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20] C 00053 Ascorbate and aldarate metabolism [PATH:hyh00053] D D3Y59_07340 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D D3Y59_09150 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D D3Y59_04375 NAD-dependent epimerase/dehydratase family protein K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] D D3Y59_11585 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00500 Starch and sucrose metabolism [PATH:hyh00500] D D3Y59_00820 DUF4968 domain-containing protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D D3Y59_07375 rfbF; glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33] D D3Y59_13795 glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21] D D3Y59_01340 glycosyltransferase K00693 GYS; glycogen synthase [EC:2.4.1.11] D D3Y59_01345 DUF3459 domain-containing protein K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D D3Y59_00805 1,4-alpha-glucan-branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D D3Y59_13265 glgP; alpha-glucan family phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1] D D3Y59_02435 pulA; type I pullulanase K01200 pulA; pullulanase [EC:3.2.1.41] D D3Y59_02700 T9SS C-terminal target domain-containing protein K01176 AMY; alpha-amylase [EC:3.2.1.1] D D3Y59_16325 T9SS C-terminal target domain-containing protein K01176 AMY; alpha-amylase [EC:3.2.1.1] D D3Y59_12625 alpha-amylase K01208 cd; cyclomaltodextrinase / maltogenic alpha-amylase / neopullulanase [EC:3.2.1.54 3.2.1.133 3.2.1.135] D D3Y59_07180 glycoside hydrolase family 97 protein K21574 susB; glucan 1,4-alpha-glucosidase [EC:3.2.1.3] D D3Y59_12595 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25] D D3Y59_12655 bifunctional alpha,alpha-trehalose-phosphate synthase (UDP-forming)/trehalose-phosphatase K16055 TPS; trehalose 6-phosphate synthase/phosphatase [EC:2.4.1.15 3.1.3.12] D D3Y59_01935 phospho-sugar mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D D3Y59_11305 hypothetical protein K13810 tal-pgi; transaldolase / glucose-6-phosphate isomerase [EC:2.2.1.2 5.3.1.9] D D3Y59_11540 carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:hyh00520] D D3Y59_08950 glycosyl hydrolase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D D3Y59_00940 serine hydrolase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D D3Y59_00440 beta-hexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D D3Y59_09490 nagA; N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] D D3Y59_00900 nagB; glucosamine-6-phosphate deaminase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6] D D3Y59_11540 carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D D3Y59_13785 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D D3Y59_15375 murQ; N-acetylmuramic acid 6-phosphate etherase K07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126] D D3Y59_16310 anhydro-N-acetylmuramic acid kinase K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170] D D3Y59_05915 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D D3Y59_03315 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D D3Y59_06270 gfo/Idh/MocA family oxidoreductase K13020 wlbA; UDP-N-acetyl-2-amino-2-deoxyglucuronate dehydrogenase [EC:1.1.1.335] D D3Y59_06280 DegT/DnrJ/EryC1/StrS family aminotransferase K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98] D D3Y59_14130 N-acetyltransferase K13018 wbpD; UDP-2-acetamido-3-amino-2,3-dideoxy-glucuronate N-acetyltransferase [EC:2.3.1.201] D D3Y59_14150 SDR family oxidoreductase K02473 wbpP; UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine 4-epimerase [EC:5.1.3.7 5.1.3.-] D D3Y59_14135 nucleotide sugar dehydrogenase K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-] D D3Y59_06195 pseB; UDP-N-acetylglucosamine 4,6-dehydratase (inverting) K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-] D D3Y59_07345 NAD-dependent epimerase/dehydratase family protein K08678 UXS1; UDP-glucuronate decarboxylase [EC:4.1.1.35] D D3Y59_12645 glycoside hydrolase K01198 xynB; xylan 1,4-beta-xylosidase [EC:3.2.1.37] D D3Y59_01935 phospho-sugar mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D D3Y59_07340 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D D3Y59_09150 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D D3Y59_12635 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D D3Y59_12630 UDP-glucose--hexose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D D3Y59_14140 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D D3Y59_16370 glf; UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9] D D3Y59_04375 NAD-dependent epimerase/dehydratase family protein K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] D D3Y59_11305 hypothetical protein K13810 tal-pgi; transaldolase / glucose-6-phosphate isomerase [EC:2.2.1.2 5.3.1.9] D D3Y59_11310 phosphoheptose isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D D3Y59_15275 glmM; phosphoglucosamine mutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D D3Y59_17030 mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D D3Y59_07320 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D D3Y59_07325 GDP-L-fucose synthase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D D3Y59_07375 rfbF; glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33] C 00620 Pyruvate metabolism [PATH:hyh00620] D D3Y59_05260 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D D3Y59_13660 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D D3Y59_06125 pyruvate dehydrogenase complex E1 component subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D D3Y59_01615 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D D3Y59_11685 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D3Y59_08060 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D3Y59_09915 NAD(P)-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D D3Y59_12425 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D D3Y59_09340 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D D3Y59_03710 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D D3Y59_05885 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D D3Y59_05890 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D D3Y59_04555 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D D3Y59_17175 acetyl-CoA carboxylase carboxyltransferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D D3Y59_09485 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D D3Y59_11585 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D D3Y59_08625 2-hydroxyacid dehydrogenase K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28] D D3Y59_10475 MBL fold metallo-hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D D3Y59_17695 MBL fold metallo-hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D D3Y59_08015 MBL fold metallo-hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D D3Y59_08870 D-2-hydroxyacid dehydrogenase K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D D3Y59_10805 NADP-dependent malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D D3Y59_06555 pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1] D D3Y59_08930 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D D3Y59_06995 malate:quinone oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4] D D3Y59_13115 fumC; class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D D3Y59_03780 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D D3Y59_00235 malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9] D D3Y59_06055 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:hyh00630] D D3Y59_00240 isocitrate lyase K01637 E4.1.3.1; isocitrate lyase [EC:4.1.3.1] D D3Y59_05260 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D D3Y59_00235 malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9] D D3Y59_08930 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D D3Y59_04820 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D D3Y59_07685 aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3] D D3Y59_06055 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D D3Y59_02050 mce; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D D3Y59_08715 acyl-CoA carboxylase subunit beta K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15] D D3Y59_17660 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D D3Y59_17665 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D D3Y59_04250 catalase K03781 katE; catalase [EC:1.11.1.6] D D3Y59_12530 catalase K03781 katE; catalase [EC:1.11.1.6] D D3Y59_08870 D-2-hydroxyacid dehydrogenase K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D D3Y59_03905 glutamine synthetase type III K01915 glnA; glutamine synthetase [EC:6.3.1.2] D D3Y59_13380 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D D3Y59_11845 gcvP; glycine dehydrogenase (aminomethyl-transferring) K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D D3Y59_00200 gcvT; glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D D3Y59_11685 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D3Y59_08060 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D3Y59_10820 gcvH; glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein C 00640 Propanoate metabolism [PATH:hyh00640] D D3Y59_05260 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D D3Y59_05265 propionyl-CoA synthetase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17] D D3Y59_12425 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D D3Y59_04150 tungsten formylmethanofuran dehydrogenase K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4] D D3Y59_11895 dehydrogenase K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4] D D3Y59_11685 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D3Y59_08060 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D3Y59_05580 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D D3Y59_03710 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D D3Y59_05885 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D D3Y59_05890 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D D3Y59_04555 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D D3Y59_17175 acetyl-CoA carboxylase carboxyltransferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D D3Y59_08715 acyl-CoA carboxylase subunit beta K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15] D D3Y59_02050 mce; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D D3Y59_17660 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D D3Y59_17665 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D D3Y59_07475 ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D D3Y59_09750 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] C 00650 Butanoate metabolism [PATH:hyh00650] D D3Y59_06055 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D D3Y59_11930 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D D3Y59_04775 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D D3Y59_13775 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D D3Y59_15405 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase family protein K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D D3Y59_05580 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D D3Y59_10745 enoyl-CoA hydratase K01715 crt; enoyl-CoA hydratase [EC:4.2.1.17] D D3Y59_07745 fumarate reductase/succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D D3Y59_07750 succinate dehydrogenase/fumarate reductase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D D3Y59_07740 succinate dehydrogenase K00241 sdhC; succinate dehydrogenase cytochrome b subunit D D3Y59_05780 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D D3Y59_05075 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D D3Y59_00500 CoA transferase subunit A K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] D D3Y59_00495 CoA transferase subunit B K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] C 00660 C5-Branched dibasic acid metabolism D D3Y59_07475 ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D D3Y59_09750 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] C 00562 Inositol phosphate metabolism [PATH:hyh00562] D D3Y59_13420 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D D3Y59_15570 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:hyh00190] D D3Y59_10170 NADH-quinone oxidoreductase subunit A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2] D D3Y59_10175 NADH-quinone oxidoreductase subunit B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2] D D3Y59_10180 NADH-quinone oxidoreductase subunit C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2] D D3Y59_10185 NADH-quinone oxidoreductase subunit D K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2] D D3Y59_10190 NAD(P)H-dependent oxidoreductase subunit E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2] D D3Y59_10195 nuoF; NADH oxidoreductase (quinone) subunit F K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2] D D3Y59_10200 Fe-S-binding domain-containing protein K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2] D D3Y59_10205 nuoH; NADH-quinone oxidoreductase subunit NuoH K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2] D D3Y59_10210 NADH-quinone oxidoreductase subunit I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2] D D3Y59_10215 NADH-quinone oxidoreductase subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2] D D3Y59_10230 nuoK; NADH-quinone oxidoreductase subunit NuoK K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2] D D3Y59_10235 NADH-quinone oxidoreductase subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2] D D3Y59_10240 NADH-quinone oxidoreductase subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2] D D3Y59_10245 NADH-quinone oxidoreductase subunit N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2] D D3Y59_10140 NAD(P)/FAD-dependent oxidoreductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D D3Y59_07745 fumarate reductase/succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D D3Y59_07750 succinate dehydrogenase/fumarate reductase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D D3Y59_07740 succinate dehydrogenase K00241 sdhC; succinate dehydrogenase cytochrome b subunit D D3Y59_00385 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D D3Y59_00400 hypothetical protein K02277 coxD; cytochrome c oxidase subunit IV [EC:7.1.1.9] D D3Y59_00390 cytochrome oxidase subunit III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9] D D3Y59_00395 cytochrome oxidase subunit III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9] D D3Y59_05025 cytochrome c oxidase subunit III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9] D D3Y59_00375 cytochrome c oxidase subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9] D D3Y59_00370 cytochrome c oxidase subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9] D D3Y59_00380 heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9] D D3Y59_11730 ccoN; cytochrome-c oxidase, cbb3-type subunit I K15862 ccoNO; cytochrome c oxidase cbb3-type subunit I/II [EC:7.1.1.9] D D3Y59_11720 hypothetical protein K00406 ccoP; cytochrome c oxidase cbb3-type subunit III D D3Y59_14915 F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D D3Y59_09425 atpD; F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D D3Y59_14920 atpG; ATP synthase F1 subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D D3Y59_14910 atpH; ATP synthase F1 subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D D3Y59_09420 atpC; ATP synthase F1 subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D D3Y59_14895 atpB; ATP synthase F0 subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a D D3Y59_14905 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b D D3Y59_14900 atpE; ATP synthase F0 subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c D D3Y59_14935 inorganic diphosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1] D D3Y59_17420 hypothetical protein K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1] D D3Y59_11235 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation in photosynthetic organisms C 00720 Carbon fixation pathways in prokaryotes C 00680 Methane metabolism [PATH:hyh00680] D D3Y59_13380 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D D3Y59_16295 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D D3Y59_08930 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D D3Y59_17170 class I fructose-bisphosphate aldolase K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D D3Y59_09305 class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D D3Y59_05570 class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D D3Y59_04330 fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D D3Y59_02930 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D D3Y59_13865 (Fe-S)-binding protein K08264 hdrD; heterodisulfide reductase subunit D [EC:1.8.98.1] D D3Y59_12425 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D D3Y59_05260 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D D3Y59_13085 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D D3Y59_05835 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D D3Y59_00710 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D D3Y59_05500 alanine--glyoxylate aminotransferase family protein K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D D3Y59_15825 phosphosulfolactate synthase K08097 comA; phosphosulfolactate synthase [EC:4.4.1.19] D D3Y59_00205 2-phosphosulfolactate phosphatase K05979 comB; 2-phosphosulfolactate phosphatase [EC:3.1.3.71] C 00910 Nitrogen metabolism [PATH:hyh00910] D D3Y59_14095 Glu/Leu/Phe/Val dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D D3Y59_03905 glutamine synthetase type III K01915 glnA; glutamine synthetase [EC:6.3.1.2] D D3Y59_15615 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] D D3Y59_07245 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] C 00920 Sulfur metabolism [PATH:hyh00920] D D3Y59_15330 sulfate adenylyltransferase K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D D3Y59_15335 cysD; sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D D3Y59_10325 bifunctional oligoribonuclease/PAP phosphatase NrnA K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] D D3Y59_15340 phosphoadenylyl-sulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10] D D3Y59_15320 assimilatory sulfite reductase (NADPH) flavoprotein subunit K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2] D D3Y59_15305 NADPH-dependent assimilatory sulfite reductase hemoprotein subunit K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2] D D3Y59_09195 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D D3Y59_09190 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D D3Y59_10645 metX; homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D D3Y59_02525 LLM class flavin-dependent oxidoreductase K17228 sfnG; dimethylsulfone monooxygenase [EC:1.14.14.35] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:hyh00061] D D3Y59_03710 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D D3Y59_05885 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D D3Y59_05890 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D D3Y59_04555 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D D3Y59_17175 acetyl-CoA carboxylase carboxyltransferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D D3Y59_15015 acyl carrier protein K02078 acpP; acyl carrier protein D D3Y59_09330 acyl carrier protein K02078 acpP; acyl carrier protein D D3Y59_07730 fabD; [acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D D3Y59_05875 ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D D3Y59_04800 ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D D3Y59_09325 fabF; beta-ketoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D D3Y59_07165 beta-ketoacyl-ACP reductase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D D3Y59_08145 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D D3Y59_14260 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D D3Y59_05375 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/3-hydroxyacyl-ACP dehydratase K16363 lpxC-fabZ; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase / 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:3.5.1.108 4.2.1.59] D D3Y59_08885 SDR family oxidoreductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D D3Y59_05665 acyl-ACP desaturase K03921 FAB2; acyl-[acyl-carrier-protein] desaturase [EC:1.14.19.2 1.14.19.11 1.14.19.26] D D3Y59_15390 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D D3Y59_03060 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:hyh00071] D D3Y59_06055 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D D3Y59_15410 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D D3Y59_05580 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D D3Y59_15405 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase family protein K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D D3Y59_16765 acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D D3Y59_15390 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D D3Y59_03060 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D D3Y59_11585 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:hyh00561] D D3Y59_11585 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D D3Y59_09915 NAD(P)-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D D3Y59_13180 glycerol acyltransferase K13507 GAT; glycerol-3-phosphate O-acyltransferase / dihydroxyacetone phosphate acyltransferase [EC:2.3.1.15 2.3.1.42] D D3Y59_05870 plsX; phosphate acyltransferase PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D D3Y59_15610 plsY; glycerol-3-phosphate 1-O-acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D D3Y59_00165 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D D3Y59_06855 glycosyltransferase K19003 mgdA; 1,2-diacylglycerol 3-beta-glucosyltransferase [EC:2.4.1.336] C 00564 Glycerophospholipid metabolism [PATH:hyh00564] D D3Y59_04225 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D D3Y59_05245 glycerol-3-phosphate dehydrogenase/oxidase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D D3Y59_13180 glycerol acyltransferase K13507 GAT; glycerol-3-phosphate O-acyltransferase / dihydroxyacetone phosphate acyltransferase [EC:2.3.1.15 2.3.1.42] D D3Y59_15610 plsY; glycerol-3-phosphate 1-O-acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D D3Y59_00165 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D D3Y59_08920 glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D D3Y59_13640 glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D D3Y59_14090 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D D3Y59_10480 CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D D3Y59_14100 phosphatidylserine decarboxylase family protein K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65] C 00565 Ether lipid metabolism C 00600 Sphingolipid metabolism [PATH:hyh00600] D D3Y59_00440 beta-hexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] C 00590 Arachidonic acid metabolism D D3Y59_03650 M1 family peptidase K01254 LTA4H; leukotriene-A4 hydrolase [EC:3.3.2.6] C 00591 Linoleic acid metabolism D D3Y59_00565 acyl-CoA desaturase K00508 E1.14.19.3; linoleoyl-CoA desaturase [EC:1.14.19.3] C 00592 alpha-Linolenic acid metabolism [PATH:hyh00592] D D3Y59_15410 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01040 Biosynthesis of unsaturated fatty acids [PATH:hyh01040] D D3Y59_01670 acyl-CoA desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1] D D3Y59_17450 acyl-CoA desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1] D D3Y59_05665 acyl-ACP desaturase K03921 FAB2; acyl-[acyl-carrier-protein] desaturase [EC:1.14.19.2 1.14.19.11 1.14.19.26] D D3Y59_13270 arylesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:hyh00230] D D3Y59_03675 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D D3Y59_02545 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D D3Y59_01935 phospho-sugar mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D D3Y59_09435 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D D3Y59_11415 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D D3Y59_11425 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D D3Y59_11420 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D D3Y59_11435 phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D D3Y59_11440 phosphoribosylformylglycinamidine synthase K23270 purSL; phosphoribosylformylglycinamidine synthase subunit PurSL [EC:6.3.5.3] D D3Y59_11410 phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D D3Y59_04940 5-(carboxyamino)imidazole ribonucleotide synthase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] D D3Y59_08205 purE; 5-(carboxyamino)imidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D D3Y59_04935 purE; 5-(carboxyamino)imidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D D3Y59_11430 phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D D3Y59_01195 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D D3Y59_10395 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D D3Y59_17675 bifunctional metallophosphatase/5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D D3Y59_05140 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D D3Y59_08125 purine-nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1] D D3Y59_09030 hpt; hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] D D3Y59_16685 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D D3Y59_10320 nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D D3Y59_16870 non-canonical purine NTP diphosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D D3Y59_09230 (2Fe-2S)-binding protein K13481 xdhA; xanthine dehydrogenase small subunit [EC:1.17.1.4] D D3Y59_09235 xanthine dehydrogenase K13482 xdhB; xanthine dehydrogenase large subunit [EC:1.17.1.4] D D3Y59_03125 xanthine dehydrogenase family protein molybdopterin-binding subunit K11177 yagR; xanthine dehydrogenase YagR molybdenum-binding subunit [EC:1.17.1.4] D D3Y59_03130 xanthine dehydrogenase family protein subunit M K11178 yagS; xanthine dehydrogenase YagS FAD-binding subunit [EC:1.17.1.4] D D3Y59_03135 (2Fe-2S)-binding protein K13483 yagT; xanthine dehydrogenase YagT iron-sulfur-binding subunit D D3Y59_06320 glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D D3Y59_06175 nucleoside deaminase K01487 guaD; guanine deaminase [EC:3.5.4.3] D D3Y59_16015 guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D D3Y59_12820 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D D3Y59_12805 ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D D3Y59_06390 dgt; dNTP triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1] D D3Y59_01120 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D D3Y59_05985 phosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D D3Y59_16340 phosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D D3Y59_01135 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D D3Y59_08430 deoxynucleoside kinase K15519 dck; deoxyadenosine/deoxycytidine kinase [EC:2.7.1.76 2.7.1.74] D D3Y59_06780 AMP nucleosidase K01241 amn; AMP nucleosidase [EC:3.2.2.4] D D3Y59_09735 ade; adenine deaminase K01486 ade; adenine deaminase [EC:3.5.4.2] D D3Y59_09025 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D D3Y59_13190 metallophosphoesterase K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53] D D3Y59_15330 sulfate adenylyltransferase K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D D3Y59_15335 cysD; sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] C 00240 Pyrimidine metabolism [PATH:hyh00240] D D3Y59_12330 carB; carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D D3Y59_12315 carA; carbamoyl-phosphate synthase (glutamine-hydrolyzing) small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D D3Y59_04925 aspartate carbamoyltransferase catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D D3Y59_04930 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3] D D3Y59_11460 hypothetical protein K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14] D D3Y59_15660 quinone-dependent dihydroorotate dehydrogenase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2] D D3Y59_11450 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D D3Y59_11455 pyrF; orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D D3Y59_16030 UMP kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D D3Y59_10320 nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D D3Y59_04255 maf; septum formation protein Maf K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D D3Y59_00660 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D D3Y59_09710 (d)CMP kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D D3Y59_16865 uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48] D D3Y59_17675 bifunctional metallophosphatase/5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D D3Y59_05140 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D D3Y59_05450 phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3] D D3Y59_10605 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D D3Y59_05525 cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5] D D3Y59_03450 nucleoside deaminase K03365 FCY1; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D D3Y59_06415 dCTP deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13] D D3Y59_12820 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D D3Y59_12805 ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D D3Y59_08430 deoxynucleoside kinase K15519 dck; deoxyadenosine/deoxycytidine kinase [EC:2.7.1.76 2.7.1.74] D D3Y59_10755 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D D3Y59_10345 thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21] D D3Y59_04035 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:hyh00250] D D3Y59_09905 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D D3Y59_08230 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D D3Y59_05330 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D D3Y59_06845 asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D D3Y59_17230 isoaspartyl peptidase/L-asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D D3Y59_03640 isoaspartyl peptidase/L-asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D D3Y59_04785 isoaspartyl peptidase/L-asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D D3Y59_02510 aspartate--ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1] D D3Y59_09155 asnB; asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D D3Y59_11185 amidohydrolase K13566 NIT2; omega-amidase [EC:3.5.1.3] D D3Y59_06760 ald; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D D3Y59_05320 alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D D3Y59_12895 aspA; aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1] D D3Y59_01135 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D D3Y59_01195 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D D3Y59_04925 aspartate carbamoyltransferase catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D D3Y59_05780 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D D3Y59_14095 Glu/Leu/Phe/Val dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D D3Y59_10165 pruA; L-glutamate gamma-semialdehyde dehydrogenase K00294 E1.2.1.88; 1-pyrroline-5-carboxylate dehydrogenase [EC:1.2.1.88] D D3Y59_03905 glutamine synthetase type III K01915 glnA; glutamine synthetase [EC:6.3.1.2] D D3Y59_12330 carB; carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D D3Y59_12315 carA; carbamoyl-phosphate synthase (glutamine-hydrolyzing) small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D D3Y59_11435 phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D D3Y59_13785 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D D3Y59_11415 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:hyh00260] D D3Y59_05575 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D D3Y59_07195 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D D3Y59_15705 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D D3Y59_10650 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D D3Y59_09535 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D D3Y59_01765 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K01620 ltaE; threonine aldolase [EC:4.1.2.48] D D3Y59_13380 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D D3Y59_08870 D-2-hydroxyacid dehydrogenase K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D D3Y59_13085 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D D3Y59_05835 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D D3Y59_00710 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D D3Y59_05500 alanine--glyoxylate aminotransferase family protein K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D D3Y59_12115 kbl; glycine C-acetyltransferase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29] D D3Y59_04550 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29] D D3Y59_11845 gcvP; glycine dehydrogenase (aminomethyl-transferring) K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D D3Y59_00200 gcvT; glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D D3Y59_11685 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D3Y59_08060 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D3Y59_10820 gcvH; glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein D D3Y59_10480 CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D D3Y59_09745 pyridoxal-phosphate dependent enzyme K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22] D D3Y59_14965 sdaAA; L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D D3Y59_04210 sdaAB; L-serine ammonia-lyase, iron-sulfur-dependent, subunit beta K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D D3Y59_10940 pyridoxal-phosphate dependent enzyme K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D D3Y59_06625 tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D D3Y59_06630 trpB; tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] C 00270 Cysteine and methionine metabolism [PATH:hyh00270] D D3Y59_09195 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D D3Y59_09190 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D D3Y59_09745 pyridoxal-phosphate dependent enzyme K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22] D D3Y59_12555 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D D3Y59_15775 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D D3Y59_09820 cystathionine gamma-synthase family protein K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11] D D3Y59_14115 GAF domain-containing protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14] D D3Y59_15980 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D D3Y59_15065 pyridoxal-phosphate dependent enzyme K01505 E3.5.99.7; 1-aminocyclopropane-1-carboxylate deaminase [EC:3.5.99.7] D D3Y59_05575 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D D3Y59_07195 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D D3Y59_15705 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D D3Y59_10650 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D D3Y59_10645 metX; homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D D3Y59_10640 O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49] D D3Y59_11040 amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D D3Y59_00140 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D D3Y59_09905 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D D3Y59_08230 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D D3Y59_05330 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D D3Y59_08930 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D D3Y59_14965 sdaAA; L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D D3Y59_04210 sdaAB; L-serine ammonia-lyase, iron-sulfur-dependent, subunit beta K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D D3Y59_05835 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D D3Y59_00710 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D D3Y59_05500 alanine--glyoxylate aminotransferase family protein K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00280 Valine, leucine and isoleucine degradation [PATH:hyh00280] D D3Y59_11040 amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D D3Y59_00140 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D D3Y59_13950 Glu/Leu/Phe/Val dehydrogenase K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9] D D3Y59_04150 tungsten formylmethanofuran dehydrogenase K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4] D D3Y59_11895 dehydrogenase K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4] D D3Y59_11685 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D3Y59_08060 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D3Y59_05580 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D D3Y59_15410 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D D3Y59_08715 acyl-CoA carboxylase subunit beta K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15] D D3Y59_02050 mce; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D D3Y59_17660 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D D3Y59_17665 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D D3Y59_11585 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D D3Y59_17480 acyl-CoA carboxylase subunit beta K01969 MCCC2; 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4] D D3Y59_07905 enoyl-CoA hydratase/isomerase family protein K13766 liuC; methylglutaconyl-CoA hydratase [EC:4.2.1.18] D D3Y59_05075 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D D3Y59_00500 CoA transferase subunit A K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] D D3Y59_00495 CoA transferase subunit B K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] D D3Y59_06055 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:hyh00290] D D3Y59_10940 pyridoxal-phosphate dependent enzyme K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D D3Y59_11040 amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D D3Y59_00140 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D D3Y59_13950 Glu/Leu/Phe/Val dehydrogenase K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9] C 00300 Lysine biosynthesis [PATH:hyh00300] D D3Y59_10650 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D D3Y59_05575 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D D3Y59_07195 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D D3Y59_15705 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D D3Y59_05065 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D D3Y59_00625 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D D3Y59_04790 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117] D D3Y59_16355 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D D3Y59_07200 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D D3Y59_07815 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D D3Y59_11195 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D D3Y59_15095 bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase K01798 alr-murF; Alr-MurF fusion protein [EC:5.1.1.1 6.3.2.10] C 00310 Lysine degradation [PATH:hyh00310] D D3Y59_16420 aldehyde dehydrogenase family protein K26061 amaB; L-aminoadipate-semialdehyde dehydrogenase D D3Y59_11780 odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D D3Y59_05410 2-oxo acid dehydrogenase subunit E2 K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D D3Y59_11685 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D3Y59_08060 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D3Y59_16765 acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D D3Y59_05580 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D D3Y59_06055 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D D3Y59_05780 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D D3Y59_11585 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00220 Arginine biosynthesis [PATH:hyh00220] D D3Y59_01230 arginase K01476 rocF; arginase [EC:3.5.3.1] D D3Y59_11435 phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D D3Y59_03905 glutamine synthetase type III K01915 glnA; glutamine synthetase [EC:6.3.1.2] D D3Y59_12330 carB; carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D D3Y59_12315 carA; carbamoyl-phosphate synthase (glutamine-hydrolyzing) small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D D3Y59_14095 Glu/Leu/Phe/Val dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D D3Y59_09905 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D D3Y59_08230 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D D3Y59_05330 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] C 00330 Arginine and proline metabolism [PATH:hyh00330] D D3Y59_03450 nucleoside deaminase K03365 FCY1; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D D3Y59_01225 arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19] D D3Y59_05930 speB; agmatinase K01480 speB; agmatinase [EC:3.5.3.11] D D3Y59_05425 carbon-nitrogen hydrolase family protein K12251 aguB; N-carbamoylputrescine amidase [EC:3.5.1.53] D D3Y59_11585 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D D3Y59_16360 N-acetyltransferase K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57] D D3Y59_07110 hypothetical protein K12255 gbuA; guanidinobutyrase [EC:3.5.3.7] D D3Y59_04900 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D D3Y59_01230 arginase K01476 rocF; arginase [EC:3.5.3.1] D D3Y59_12230 rocD; ornithine--oxo-acid transaminase K00819 rocD; ornithine--oxo-acid transaminase [EC:2.6.1.13] D D3Y59_00735 proC; pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D D3Y59_08765 proline dehydrogenase K00318 PRODH; proline dehydrogenase [EC:1.5.5.2] D D3Y59_10165 pruA; L-glutamate gamma-semialdehyde dehydrogenase K00294 E1.2.1.88; 1-pyrroline-5-carboxylate dehydrogenase [EC:1.2.1.88] D D3Y59_08585 alpha/beta hydrolase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D D3Y59_12915 alpha/beta hydrolase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D D3Y59_07130 alpha/beta fold hydrolase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D D3Y59_08835 alpha/beta fold hydrolase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D D3Y59_09905 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D D3Y59_08230 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D D3Y59_05330 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] C 00340 Histidine metabolism [PATH:hyh00340] D D3Y59_04430 ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17] D D3Y59_04395 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31] D D3Y59_04405 hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] D D3Y59_04410 hisH; imidazole glycerol phosphate synthase subunit HisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D D3Y59_04400 hisF; imidazole glycerol phosphate synthase subunit HisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D D3Y59_04415 hisB; bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB K01089 hisB; imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase [EC:4.2.1.19 3.1.3.15] D D3Y59_04420 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D D3Y59_04425 hisD; histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] D D3Y59_06095 hutH; histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D D3Y59_07070 hutU; urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49] D D3Y59_06945 imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7] D D3Y59_11585 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D D3Y59_01875 egtD; L-histidine N(alpha)-methyltransferase K18911 egtD; L-histidine Nalpha-methyltransferase [EC:2.1.1.44] C 00350 Tyrosine metabolism [PATH:hyh00350] D D3Y59_09905 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D D3Y59_08230 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D D3Y59_05330 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D D3Y59_04420 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D D3Y59_01950 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D D3Y59_12350 homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5] D D3Y59_05240 fahA; fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2] D D3Y59_05780 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00360 Phenylalanine metabolism [PATH:hyh00360] D D3Y59_06605 phenylalanine 4-monooxygenase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] D D3Y59_03210 phhA; phenylalanine 4-monooxygenase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] D D3Y59_02145 1,2-phenylacetyl-CoA epoxidase subunit A K02609 paaA; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA [EC:1.14.13.149] D D3Y59_02140 phenylacetic acid degradation b K02610 paaB; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB D D3Y59_02135 paaI; phenylacetate-CoA oxygenase subunit PaaI K02611 paaC; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC [EC:1.14.13.149] D D3Y59_02130 paaJ; phenylacetate-CoA oxygenase subunit PaaJ K02612 paaD; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD D D3Y59_02110 oxidoreductase K02613 paaE; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE D D3Y59_12495 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18] D D3Y59_05580 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D D3Y59_11930 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D D3Y59_04775 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D D3Y59_13775 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D D3Y59_09905 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D D3Y59_08230 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D D3Y59_05330 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D D3Y59_04420 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D D3Y59_01950 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D D3Y59_04900 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] C 00380 Tryptophan metabolism [PATH:hyh00380] D D3Y59_04205 tryptophan 2,3-dioxygenase K00453 TDO2; tryptophan 2,3-dioxygenase [EC:1.13.11.11] D D3Y59_14305 FAD-dependent monooxygenase K00486 KMO; kynurenine 3-monooxygenase [EC:1.14.13.9] D D3Y59_14280 kynU; kynureninase K01556 KYNU; kynureninase [EC:3.7.1.3] D D3Y59_14265 3-hydroxyanthranilate 3,4-dioxygenase K00452 HAAO; 3-hydroxyanthranilate 3,4-dioxygenase [EC:1.13.11.6] D D3Y59_14275 amidohydrolase K03392 ACMSD; aminocarboxymuconate-semialdehyde decarboxylase [EC:4.1.1.45] D D3Y59_14235 aldehyde dehydrogenase K10217 dmpC; aminomuconate-semialdehyde/2-hydroxymuconate-6-semialdehyde dehydrogenase [EC:1.2.1.32 1.2.1.85] D D3Y59_16475 RidA family protein K15067 amnD; 2-aminomuconate deaminase [EC:3.5.99.5] D D3Y59_11780 odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D D3Y59_05410 2-oxo acid dehydrogenase subunit E2 K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D D3Y59_11685 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D3Y59_08060 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D3Y59_16765 acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D D3Y59_05580 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D D3Y59_06055 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D D3Y59_11585 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D D3Y59_04900 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D D3Y59_04250 catalase K03781 katE; catalase [EC:1.11.1.6] D D3Y59_12530 catalase K03781 katE; catalase [EC:1.11.1.6] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:hyh00400] D D3Y59_06620 aroF; 3-deoxy-7-phosphoheptulonate synthase K03856 AROA2; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D D3Y59_08735 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] D D3Y59_05495 aroQ; type II 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10] D D3Y59_12080 shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71] D D3Y59_08730 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D D3Y59_16755 chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D D3Y59_06655 anthranilate synthase component I family protein K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D D3Y59_06650 aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D D3Y59_06645 trpD; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] D D3Y59_06635 phosphoribosylanthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24] D D3Y59_04465 hypothetical protein K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24] D D3Y59_06640 trpC; indole-3-glycerol phosphate synthase TrpC K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48] D D3Y59_06625 tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D D3Y59_06630 trpB; tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D D3Y59_08760 3-deoxy-7-phosphoheptulonate synthase K04516 AROA1; chorismate mutase [EC:5.4.99.5] D D3Y59_09905 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D D3Y59_08230 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D D3Y59_05330 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D D3Y59_04420 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D D3Y59_06605 phenylalanine 4-monooxygenase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] D D3Y59_03210 phhA; phenylalanine 4-monooxygenase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism [PATH:hyh00410] D D3Y59_13805 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] D D3Y59_11585 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D D3Y59_13800 pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D D3Y59_05580 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] C 00430 Taurine and hypotaurine metabolism [PATH:hyh00430] D D3Y59_00795 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D D3Y59_06760 ald; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D D3Y59_05320 alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D D3Y59_12425 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00440 Phosphonate and phosphinate metabolism D D3Y59_02900 MBL fold metallo-hydrolase K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55] C 00450 Selenocompound metabolism [PATH:hyh00450] D D3Y59_12555 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D D3Y59_09820 cystathionine gamma-synthase family protein K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11] D D3Y59_17125 NAD(P)/FAD-dependent oxidoreductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D D3Y59_04570 trxB; thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D D3Y59_13195 response regulator K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D D3Y59_15330 sulfate adenylyltransferase K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D D3Y59_15335 cysD; sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D D3Y59_15140 selD; selenide, water dikinase SelD K01008 selD; selenide, water dikinase [EC:2.7.9.3] D D3Y59_09450 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:hyh00460] D D3Y59_00795 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D D3Y59_06845 asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D D3Y59_17230 isoaspartyl peptidase/L-asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D D3Y59_03640 isoaspartyl peptidase/L-asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D D3Y59_04785 isoaspartyl peptidase/L-asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D D3Y59_02510 aspartate--ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1] D D3Y59_13380 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:hyh00470] D D3Y59_15095 bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase K01798 alr-murF; Alr-MurF fusion protein [EC:5.1.1.1 6.3.2.10] D D3Y59_07440 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D D3Y59_11435 phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D D3Y59_01985 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D D3Y59_07805 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D D3Y59_08280 dipeptide epimerase K19802 ycjG; L-Ala-D/L-Glu epimerase / N-acetyl-D-glutamate racemase [EC:5.1.1.20 5.1.1.25] D D3Y59_16355 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D D3Y59_07200 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] C 00480 Glutathione metabolism [PATH:hyh00480] D D3Y59_00795 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D D3Y59_02385 pxpA; 5-oxoprolinase subunit PxpA K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9] D D3Y59_05845 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D D3Y59_02370 aminopeptidase K01256 pepN; aminopeptidase N [EC:3.4.11.2] D D3Y59_16040 M1 family peptidase K01256 pepN; aminopeptidase N [EC:3.4.11.2] D D3Y59_06355 NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D D3Y59_09885 NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D D3Y59_01250 glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation [PATH:hyh00511] D D3Y59_00440 beta-hexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] C 00540 Lipopolysaccharide biosynthesis [PATH:hyh00540] D D3Y59_05380 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D D3Y59_05375 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/3-hydroxyacyl-ACP dehydratase K16363 lpxC-fabZ; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase / 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:3.5.1.108 4.2.1.59] D D3Y59_05370 lpxD; UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D D3Y59_16985 UDP-2,3-diacylglucosamine diphosphatase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D D3Y59_01095 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D D3Y59_03850 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D D3Y59_17025 KpsF/GutQ family sugar-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D D3Y59_00600 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D D3Y59_10420 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D D3Y59_03275 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D D3Y59_05595 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D D3Y59_08675 lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D D3Y59_15670 D-sedoheptulose 7-phosphate isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D D3Y59_08220 D-glycero-beta-D-manno-heptose-7-phosphate kinase K21344 rfaE1; D-glycero-beta-D-manno-heptose-7-phosphate kinase [EC:2.7.1.167] D D3Y59_01220 HAD family hydrolase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D D3Y59_13815 rfaE2; D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase K21345 rfaE2; D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase [EC:2.7.7.70] D D3Y59_01055 rfaD; ADP-glyceromanno-heptose 6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20] D D3Y59_17285 glycosyltransferase family 9 protein K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24] D D3Y59_16000 hypothetical protein K02847 waaL; O-antigen ligase [EC:2.4.99.26] D D3Y59_16145 O-antigen ligase family protein K02847 waaL; O-antigen ligase [EC:2.4.99.26] C 00542 O-Antigen repeat unit biosynthesis [PATH:hyh00542] D D3Y59_14830 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:hyh00541] D D3Y59_14140 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D D3Y59_16370 glf; UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9] D D3Y59_07340 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D D3Y59_09150 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D D3Y59_04375 NAD-dependent epimerase/dehydratase family protein K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] D D3Y59_14670 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D D3Y59_10760 nucleotidyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D D3Y59_14155 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D D3Y59_09145 SDR family oxidoreductase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D D3Y59_14145 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D D3Y59_11200 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D D3Y59_07370 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D D3Y59_16920 SDR family oxidoreductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D D3Y59_09065 dTDP-4-amino-4,6-dideoxygalactose transaminase K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59] D D3Y59_07375 rfbF; glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33] D D3Y59_11310 phosphoheptose isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D D3Y59_15275 glmM; phosphoglucosamine mutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D D3Y59_17030 mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D D3Y59_07320 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D D3Y59_07325 GDP-L-fucose synthase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D D3Y59_06195 pseB; UDP-N-acetylglucosamine 4,6-dehydratase (inverting) K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-] D D3Y59_14135 nucleotide sugar dehydrogenase K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-] D D3Y59_06270 gfo/Idh/MocA family oxidoreductase K13020 wlbA; UDP-N-acetyl-2-amino-2-deoxyglucuronate dehydrogenase [EC:1.1.1.335] D D3Y59_06280 DegT/DnrJ/EryC1/StrS family aminotransferase K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98] D D3Y59_14130 N-acetyltransferase K13018 wbpD; UDP-2-acetamido-3-amino-2,3-dideoxy-glucuronate N-acetyltransferase [EC:2.3.1.201] D D3Y59_14150 SDR family oxidoreductase K02473 wbpP; UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine 4-epimerase [EC:5.1.3.7 5.1.3.-] C 00550 Peptidoglycan biosynthesis [PATH:hyh00550] D D3Y59_05915 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D D3Y59_03315 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D D3Y59_07790 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D D3Y59_07440 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D D3Y59_07805 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D D3Y59_07815 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D D3Y59_11195 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D D3Y59_15095 bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase K01798 alr-murF; Alr-MurF fusion protein [EC:5.1.1.1 6.3.2.10] D D3Y59_15205 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D D3Y59_00515 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D D3Y59_07810 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D D3Y59_07795 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D D3Y59_04710 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D D3Y59_14875 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D D3Y59_17395 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D D3Y59_09585 pbpC; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D D3Y59_10375 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D D3Y59_11945 peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D D3Y59_04915 peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D D3Y59_07820 PASTA domain-containing protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D D3Y59_00640 peptidase S13 K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] C 00552 Teichoic acid biosynthesis [PATH:hyh00552] D D3Y59_00515 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D D3Y59_14830 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D D3Y59_07380 glycosyltransferase K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis [PATH:hyh00543] D D3Y59_14830 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D D3Y59_09195 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:hyh00730] D D3Y59_02045 IscS subfamily cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D D3Y59_15280 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D D3Y59_10620 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D D3Y59_02155 thiL; thiamine-phosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16] D D3Y59_05600 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D D3Y59_09025 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:hyh00740] D D3Y59_05185 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D D3Y59_14120 ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D D3Y59_13670 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D D3Y59_04120 riboflavin synthase K00793 ribE; riboflavin synthase [EC:2.5.1.9] D D3Y59_00505 bifunctional riboflavin kinase/FAD synthetase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] D D3Y59_01045 alkaline phosphatase K14379 ACP5; tartrate-resistant acid phosphatase type 5 [EC:3.1.3.2] D D3Y59_03675 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D D3Y59_02545 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] C 00750 Vitamin B6 metabolism [PATH:hyh00750] D D3Y59_04265 pdxH; pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5] D D3Y59_12675 pdxH; pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5] D D3Y59_05500 alanine--glyoxylate aminotransferase family protein K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D D3Y59_15155 pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2] D D3Y59_09535 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] C 00760 Nicotinate and nicotinamide metabolism [PATH:hyh00760] D D3Y59_13075 nadC; carboxylating nicotinate-nucleotide diphosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] D D3Y59_11385 nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21] D D3Y59_08125 purine-nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1] D D3Y59_05700 cytidyltransferase-like domain-containing protein K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22] D D3Y59_17675 bifunctional metallophosphatase/5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D D3Y59_05140 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D D3Y59_16020 nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D D3Y59_09315 nadE; NAD(+) synthase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] D D3Y59_08465 CinA family protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42] D D3Y59_06975 bifunctional nicotinamidase/pyrazinamidase K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-] D D3Y59_05975 NAD-dependent deacylase K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313] D D3Y59_15190 NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] D D3Y59_05780 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00770 Pantothenate and CoA biosynthesis [PATH:hyh00770] D D3Y59_17460 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D D3Y59_13800 pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D D3Y59_13685 type III pantothenate kinase K03525 coaX; type III pantothenate kinase [EC:2.7.1.33] D D3Y59_01785 pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D D3Y59_13985 dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D D3Y59_04865 4'-phosphopantetheinyl transferase superfamily protein K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-] D D3Y59_17500 4'-phosphopantetheinyl transferase superfamily protein K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-] D D3Y59_03970 DUF479 domain-containing protein K08682 acpH; acyl carrier protein phosphodiesterase [EC:3.1.4.14] D D3Y59_11040 amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D D3Y59_00140 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D D3Y59_13805 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] D D3Y59_11585 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00780 Biotin metabolism [PATH:hyh00780] D D3Y59_09325 fabF; beta-ketoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D D3Y59_07165 beta-ketoacyl-ACP reductase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D D3Y59_08145 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D D3Y59_14260 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D D3Y59_08885 SDR family oxidoreductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D D3Y59_07150 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D D3Y59_13320 pyridoxal phosphate-dependent aminotransferase family protein K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D D3Y59_07160 bioA; adenosylmethionine--8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D D3Y59_07155 bioD; dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3] D D3Y59_07145 bioB; biotin synthase BioB K01012 bioB; biotin synthase [EC:2.8.1.6] D D3Y59_17055 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism [PATH:hyh00785] D D3Y59_14820 lipB; lipoyl(octanoyl) transferase LipB K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181] D D3Y59_11865 lipA; lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8] D D3Y59_11685 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D3Y59_08060 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D3Y59_13660 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D D3Y59_06125 pyruvate dehydrogenase complex E1 component subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D D3Y59_01615 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D D3Y59_11785 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D D3Y59_11780 odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D D3Y59_05410 2-oxo acid dehydrogenase subunit E2 K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D D3Y59_04150 tungsten formylmethanofuran dehydrogenase K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4] D D3Y59_11895 dehydrogenase K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4] D D3Y59_11845 gcvP; glycine dehydrogenase (aminomethyl-transferring) K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D D3Y59_00200 gcvT; glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D D3Y59_10820 gcvH; glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein C 00790 Folate biosynthesis [PATH:hyh00790] D D3Y59_17405 folE; GTP cyclohydrolase I FolE K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D D3Y59_17195 alkaline phosphatase family protein K01113 phoD; alkaline phosphatase D [EC:3.1.3.1] D D3Y59_17515 folB; dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81] D D3Y59_07720 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D D3Y59_12100 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D D3Y59_02085 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D D3Y59_04480 bifunctional folylpolyglutamate synthase/dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D D3Y59_05185 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D D3Y59_15170 aminodeoxychorismate/anthranilate synthase component II K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85] D D3Y59_03825 pabB; aminodeoxychorismate synthase component I K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85] D D3Y59_04040 hypothetical protein K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38] D D3Y59_17410 6-carboxytetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D D3Y59_01090 6-carboxytetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D D3Y59_13405 4a-hydroxytetrahydrobiopterin dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D D3Y59_06605 phenylalanine 4-monooxygenase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] D D3Y59_03210 phhA; phenylalanine 4-monooxygenase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] D D3Y59_04840 7-carboxy-7-deazaguanine synthase QueE K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D D3Y59_03100 moaA; GTP 3',8-cyclase MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D D3Y59_03070 moaC; cyclic pyranopterin monophosphate synthase MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D D3Y59_03090 molybdenum cofactor biosynthesis protein MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D D3Y59_03065 molybdopterin molybdenumtransferase MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D D3Y59_03120 nucleotidyltransferase family protein K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76] D D3Y59_03075 molybdopterin-guanine dinucleotide biosynthesis protein MobA K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77] C 00670 One carbon pool by folate [PATH:hyh00670] D D3Y59_02085 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D D3Y59_04845 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D D3Y59_13380 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D D3Y59_11420 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D D3Y59_10395 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D D3Y59_02090 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D D3Y59_00200 gcvT; glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D D3Y59_12555 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D D3Y59_04035 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] D D3Y59_12560 metF; methylenetetrahydrofolate reductase [NAD(P)H] K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D D3Y59_12180 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:hyh00860] D D3Y59_13760 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D D3Y59_14035 glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70] D D3Y59_06405 hemL; glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D D3Y59_07355 glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D D3Y59_12245 porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D D3Y59_16900 hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D D3Y59_14840 uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75] D D3Y59_08215 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37] D D3Y59_04140 oxygen-dependent coproporphyrinogen oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3] D D3Y59_01215 hemG; protoporphyrinogen oxidase K00231 PPOX; protoporphyrinogen/coproporphyrinogen III oxidase [EC:1.3.3.4 1.3.3.15] D D3Y59_15350 ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9] D D3Y59_15325 cobA; uroporphyrinogen-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107] D D3Y59_00385 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D D3Y59_00380 heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9] D D3Y59_00145 cob(I)yrinic acid a,c-diamide adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D D3Y59_01070 adenosylcobinamide-GDP ribazoletransferase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26] D D3Y59_01065 cobT; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21] D D3Y59_01075 alpha-ribazole phosphatase K02226 cobC; alpha-ribazole phosphatase [EC:3.1.3.73] D D3Y59_05625 magnesium chelatase K03405 chlI; magnesium chelatase subunit I [EC:6.6.1.1] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:hyh00130] D D3Y59_05545 ubiE; bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201] D D3Y59_01600 isochorismate synthase K02361 entC; isochorismate synthase [EC:5.4.4.2] D D3Y59_01590 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9] D D3Y59_01895 o-succinylbenzoate synthase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113] D D3Y59_01555 acyl-CoA synthetase K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26] D D3Y59_01585 menB; 1,4-dihydroxy-2-naphthoyl-CoA synthase K01661 menB; naphthoate synthase [EC:4.1.3.36] D D3Y59_01605 hotdog fold thioesterase K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28] D D3Y59_01255 1,4-dihydroxy-2-naphthoate polyprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] D D3Y59_04980 flavodoxin family protein K00355 NQO1; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D D3Y59_15880 NAD(P)H:quinone oxidoreductase K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D D3Y59_01950 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:hyh00900] D D3Y59_10620 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D D3Y59_00045 1-deoxy-D-xylulose-5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] D D3Y59_12490 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60] D D3Y59_09395 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D D3Y59_14990 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12] D D3Y59_03920 ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] D D3Y59_07870 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] D D3Y59_09705 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] D D3Y59_06055 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D D3Y59_12305 hydroxymethylglutaryl-CoA reductase K00021 HMGCR; hydroxymethylglutaryl-CoA reductase (NADPH) [EC:1.1.1.34] D D3Y59_13620 polyprenyl synthetase family protein K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D D3Y59_07710 polyprenyl synthetase family protein K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D D3Y59_15205 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis [PATH:hyh00906] D D3Y59_07880 phytoene/squalene synthase family protein K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32] D D3Y59_07885 crtI; phytoene desaturase K10027 crtI; phytoene desaturase [EC:1.3.99.26 1.3.99.28 1.3.99.29 1.3.99.31] D D3Y59_12470 Lycopene cyclase K06443 lcyB; lycopene beta-cyclase [EC:5.5.1.19] D D3Y59_07865 fatty acid desaturase K09836 crtW; beta-carotene/zeaxanthin 4-ketolase [EC:1.14.99.63 1.14.99.64] D D3Y59_07900 fatty acid hydroxylase K15746 crtZ; beta-carotene 3-hydroxylase [EC:1.14.15.24] D D3Y59_13295 crtI; phytoene desaturase K10210 crtP; diapolycopene oxygenase [EC:1.14.99.44] C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation [PATH:hyh00903] D D3Y59_11585 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D D3Y59_01910 alpha/beta hydrolase K14731 mlhB; epsilon-lactone hydrolase [EC:3.1.1.83] C 00907 Pinene, camphor and geraniol degradation [PATH:hyh00907] D D3Y59_05580 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D D3Y59_05075 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D D3Y59_15410 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D D3Y59_02970 transketolase family protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D D3Y59_02980 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis [PATH:hyh00523] D D3Y59_14670 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D D3Y59_10760 nucleotidyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D D3Y59_14155 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D D3Y59_09145 SDR family oxidoreductase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D D3Y59_14145 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D D3Y59_11200 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D D3Y59_07370 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D D3Y59_16920 SDR family oxidoreductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides D D3Y59_01600 isochorismate synthase K02361 entC; isochorismate synthase [EC:5.4.4.2] C 01055 Biosynthesis of vancomycin group antibiotics D D3Y59_09145 SDR family oxidoreductase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D D3Y59_14145 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis D D3Y59_14525 penicillin acylase family protein K01434 pac; penicillin G amidase [EC:3.5.1.11] C 00332 Carbapenem biosynthesis C 00261 Monobactam biosynthesis [PATH:hyh00261] D D3Y59_15330 sulfate adenylyltransferase K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D D3Y59_15335 cysD; sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D D3Y59_05575 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D D3Y59_07195 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D D3Y59_15705 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D D3Y59_05065 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D D3Y59_00625 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:hyh00521] D D3Y59_01935 phospho-sugar mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D D3Y59_13420 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D D3Y59_14670 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D D3Y59_10760 nucleotidyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D D3Y59_14155 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D D3Y59_09145 SDR family oxidoreductase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D D3Y59_14145 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D D3Y59_11200 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D D3Y59_07370 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D D3Y59_16920 SDR family oxidoreductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 00524 Neomycin, kanamycin and gentamicin biosynthesis C 00525 Acarbose and validamycin biosynthesis [PATH:hyh00525] D D3Y59_14670 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D D3Y59_10760 nucleotidyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D D3Y59_14155 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D D3Y59_09145 SDR family oxidoreductase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D D3Y59_14145 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00401 Novobiocin biosynthesis [PATH:hyh00401] D D3Y59_09905 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D D3Y59_08230 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D D3Y59_05330 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D D3Y59_04420 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis [PATH:hyh00405] D D3Y59_03225 PhzF family phenazine biosynthesis protein K06998 phzF; trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17] D D3Y59_06655 anthranilate synthase component I family protein K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D D3Y59_06650 aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] C 00333 Prodigiosin biosynthesis D D3Y59_07730 fabD; [acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D D3Y59_08145 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D D3Y59_14260 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D D3Y59_08885 SDR family oxidoreductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D D3Y59_15015 acyl carrier protein K02078 acpP; acyl carrier protein D D3Y59_09330 acyl carrier protein K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites D D3Y59_15775 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] C 00997 Biosynthesis of various other secondary metabolites B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation [PATH:hyh00362] D D3Y59_15410 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D D3Y59_14235 aldehyde dehydrogenase K10217 dmpC; aminomuconate-semialdehyde/2-hydroxymuconate-6-semialdehyde dehydrogenase [EC:1.2.1.32 1.2.1.85] D D3Y59_15405 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase family protein K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D D3Y59_16765 acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D D3Y59_05580 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D D3Y59_11930 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D D3Y59_04775 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D D3Y59_13775 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D D3Y59_06055 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00627 Aminobenzoate degradation [PATH:hyh00627] D D3Y59_04900 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D D3Y59_09485 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D D3Y59_05580 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] C 00364 Fluorobenzoate degradation [PATH:hyh00364] D D3Y59_06585 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D D3Y59_08815 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00625 Chloroalkane and chloroalkene degradation [PATH:hyh00625] D D3Y59_11585 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:hyh00361] D D3Y59_06585 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D D3Y59_08815 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00623 Toluene degradation [PATH:hyh00623] D D3Y59_06585 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D D3Y59_08815 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00622 Xylene degradation D D3Y59_14235 aldehyde dehydrogenase K10217 dmpC; aminomuconate-semialdehyde/2-hydroxymuconate-6-semialdehyde dehydrogenase [EC:1.2.1.32 1.2.1.85] C 00633 Nitrotoluene degradation C 00642 Ethylbenzene degradation D D3Y59_15410 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 00643 Styrene degradation [PATH:hyh00643] D D3Y59_12350 homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5] D D3Y59_05240 fahA; fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2] D D3Y59_04900 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] C 00791 Atrazine degradation C 00930 Caprolactam degradation [PATH:hyh00930] D D3Y59_01910 alpha/beta hydrolase K14731 mlhB; epsilon-lactone hydrolase [EC:3.1.1.83] D D3Y59_05580 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] C 00363 Bisphenol degradation C 00621 Dioxin degradation C 00626 Naphthalene degradation C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:hyh03020] D D3Y59_16100 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D D3Y59_16105 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D D3Y59_16285 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] C 03022 Basal transcription factors C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:hyh03010] D D3Y59_00570 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D D3Y59_16580 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D D3Y59_16180 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D D3Y59_16280 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D D3Y59_16235 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D D3Y59_00335 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D D3Y59_16130 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D D3Y59_16220 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D D3Y59_16575 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D D3Y59_16140 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D D3Y59_16275 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D D3Y59_16125 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D D3Y59_16270 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D D3Y59_16215 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D D3Y59_04585 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D D3Y59_17445 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D D3Y59_16195 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D D3Y59_00330 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D D3Y59_16170 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D D3Y59_09345 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D D3Y59_15790 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D D3Y59_16085 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D D3Y59_16165 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D D3Y59_16150 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D D3Y59_16155 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D D3Y59_16210 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D D3Y59_16225 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D D3Y59_16095 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D D3Y59_00325 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D D3Y59_16090 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D D3Y59_16080 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D D3Y59_16570 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D D3Y59_16200 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D D3Y59_16245 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D D3Y59_16185 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D D3Y59_16290 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D D3Y59_16230 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D D3Y59_17430 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D D3Y59_04605 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D D3Y59_12800 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D D3Y59_16175 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D D3Y59_16160 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D D3Y59_16205 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D D3Y59_09440 50S ribosomal protein L25/general stress protein Ctc K02897 RP-L25; large subunit ribosomal protein L25 D D3Y59_12795 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D D3Y59_12220 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D D3Y59_16190 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D D3Y59_16240 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D D3Y59_16880 type B 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D D3Y59_05865 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D D3Y59_12210 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D D3Y59_10565 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D D3Y59_04610 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D D3Y59_16265 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D D3Y59_10520 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D D3Y59_12615 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D D3Y59_01140 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D D3Y59_04280 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D D3Y59_10505 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D D3Y59_12610 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D D3Y59_01155 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D D3Y59_04285 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D D3Y59_10500 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D D3Y59_12605 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D D3Y59_04290 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D D3Y59_01160 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:hyh00970] D D3Y59_01150 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D D3Y59_09185 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D D3Y59_10510 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D D3Y59_11280 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D D3Y59_07490 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D D3Y59_17145 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D D3Y59_06030 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D D3Y59_11940 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D D3Y59_03715 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D D3Y59_03720 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D D3Y59_00575 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D D3Y59_09430 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D D3Y59_03250 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D D3Y59_06165 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D D3Y59_16050 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D D3Y59_15915 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D D3Y59_10895 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D D3Y59_10900 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D D3Y59_10590 tRNA-His K14226 tRNA-His; tRNA His D D3Y59_01145 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D D3Y59_10515 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D D3Y59_01115 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D D3Y59_02885 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D D3Y59_07940 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D D3Y59_08320 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D D3Y59_10890 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D D3Y59_00270 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D D3Y59_02220 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D D3Y59_04600 tRNA-Met K14230 tRNA-Met; tRNA Met D D3Y59_07405 tRNA-Met K14230 tRNA-Met; tRNA Met D D3Y59_12755 tRNA-Met K14230 tRNA-Met; tRNA Met D D3Y59_13855 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D D3Y59_06035 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D D3Y59_13925 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D D3Y59_13930 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D D3Y59_08640 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D D3Y59_06040 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D D3Y59_06840 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D D3Y59_08645 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D D3Y59_04305 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D D3Y59_15040 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D D3Y59_16055 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D D3Y59_16065 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D D3Y59_16045 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D D3Y59_11535 tRNA-Val K14237 tRNA-Val; tRNA Val D D3Y59_14005 tRNA-Val K14237 tRNA-Val; tRNA Val D D3Y59_13760 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D D3Y59_10795 gatA; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D D3Y59_04075 gatB; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D D3Y59_00160 gatC; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D D3Y59_04060 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D D3Y59_10275 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D D3Y59_14320 asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D D3Y59_13585 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D D3Y59_04620 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D D3Y59_17335 serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D D3Y59_10670 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D D3Y59_09450 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D D3Y59_02090 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D D3Y59_05420 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D D3Y59_03950 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D D3Y59_13600 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D D3Y59_08790 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D D3Y59_01240 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D D3Y59_14200 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D D3Y59_06090 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D D3Y59_11925 phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D D3Y59_09780 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D D3Y59_04540 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D D3Y59_01310 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:hyh03060] D D3Y59_16250 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D D3Y59_16070 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D D3Y59_03800 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D D3Y59_16745 protein translocase subunit SecDF K12257 secDF; SecD/SecF fusion protein D D3Y59_13975 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D D3Y59_00665 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D D3Y59_16380 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D D3Y59_06180 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D D3Y59_06310 ffs; signal recognition particle sRNA small type K01983 ffs; SRP RNA D D3Y59_12200 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D D3Y59_10785 twin-arginine translocase TatA/TatE family subunit K03116 tatA; sec-independent protein translocase protein TatA D D3Y59_10790 twin-arginine translocase TatA/TatE family subunit K03116 tatA; sec-independent protein translocase protein TatA D D3Y59_13375 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC D D3Y59_00620 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D D3Y59_13605 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:hyh04122] D D3Y59_02045 IscS subfamily cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D D3Y59_15280 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D D3Y59_04460 mnmA; tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D D3Y59_03090 molybdenum cofactor biosynthesis protein MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D D3Y59_03100 moaA; GTP 3',8-cyclase MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D D3Y59_03115 moeB; molybdopterin-synthase adenylyltransferase MoeB K21147 moeZR; sulfur-carrier protein adenylyltransferase/sulfurtransferase [EC:2.7.7.80 2.7.7.- 2.8.1.11 2.8.1.-] D D3Y59_03070 moaC; cyclic pyranopterin monophosphate synthase MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] C 03050 Proteasome C 03018 RNA degradation [PATH:hyh03018] D D3Y59_16295 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D D3Y59_04580 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D D3Y59_10595 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D D3Y59_03670 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D D3Y59_01280 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D D3Y59_13615 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D D3Y59_03545 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D D3Y59_03335 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D D3Y59_07460 RecQ family ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D D3Y59_17020 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D D3Y59_17340 transcription termination factor Rho K03628 rho; transcription termination factor Rho D D3Y59_09765 rny; ribonuclease Y K18682 rny; ribonucrease Y [EC:3.1.-.-] D D3Y59_02930 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D D3Y59_08180 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D D3Y59_03790 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D D3Y59_11235 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D D3Y59_02060 HD domain-containing protein K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] B B 09124 Replication and repair C 03030 DNA replication [PATH:hyh03030] D D3Y59_04670 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D D3Y59_00430 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D D3Y59_17850 DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D D3Y59_17250 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D D3Y59_09870 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D D3Y59_16895 DNA polymerase III subunit delta K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D D3Y59_04530 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D D3Y59_06430 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D D3Y59_03025 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D D3Y59_05210 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D D3Y59_15445 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D D3Y59_03635 DUF3127 domain-containing protein K03111 ssb; single-strand DNA-binding protein D D3Y59_05510 ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D D3Y59_00180 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D D3Y59_14640 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D D3Y59_05050 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:hyh03410] D D3Y59_15485 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D D3Y59_17200 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D D3Y59_09515 Fe-S cluster assembly protein HesB K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D D3Y59_00615 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D D3Y59_15450 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D D3Y59_15965 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] D D3Y59_03220 mutM; DNA-formamidopyrimidine glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D D3Y59_01745 DNA-3-methyladenine glycosylase 2 family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D D3Y59_02275 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D D3Y59_13530 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D D3Y59_14640 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D D3Y59_13715 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D D3Y59_05050 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:hyh03420] D D3Y59_10965 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D D3Y59_14340 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A D D3Y59_15555 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D D3Y59_02665 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D D3Y59_15895 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B D D3Y59_14870 uvrC; excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C D D3Y59_05905 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D D3Y59_09665 helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D D3Y59_14640 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D D3Y59_05050 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03430 Mismatch repair [PATH:hyh03430] D D3Y59_10905 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D D3Y59_03305 endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2 D D3Y59_08945 mutL; DNA mismatch repair endonuclease MutL K03572 mutL; DNA mismatch repair protein MutL D D3Y59_05905 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D D3Y59_09665 helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D D3Y59_08555 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D D3Y59_08550 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D D3Y59_13715 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D D3Y59_15445 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D D3Y59_03635 DUF3127 domain-containing protein K03111 ssb; single-strand DNA-binding protein D D3Y59_17250 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D D3Y59_06430 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D D3Y59_09870 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D D3Y59_04530 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D D3Y59_16895 DNA polymerase III subunit delta K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D D3Y59_04670 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D D3Y59_00430 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D D3Y59_17850 DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D D3Y59_05050 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03440 Homologous recombination [PATH:hyh03440] D D3Y59_13715 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D D3Y59_15445 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D D3Y59_03635 DUF3127 domain-containing protein K03111 ssb; single-strand DNA-binding protein D D3Y59_13655 DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF D D3Y59_10355 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D D3Y59_08240 recR; recombination protein RecR K06187 recR; recombination protein RecR D D3Y59_16630 recA; recombinase RecA K03553 recA; recombination protein RecA D D3Y59_14640 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D D3Y59_10810 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA D D3Y59_16795 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D D3Y59_06915 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D D3Y59_15435 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D D3Y59_17250 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D D3Y59_06430 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D D3Y59_09870 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D D3Y59_04530 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D D3Y59_16895 DNA polymerase III subunit delta K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D D3Y59_04670 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D D3Y59_00430 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D D3Y59_17850 DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D D3Y59_00310 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] C 03450 Non-homologous end-joining C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus and Lyssavirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:hyh02010] D D3Y59_17475 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D D3Y59_06490 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D D3Y59_06495 ATP-binding cassette domain-containing protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D D3Y59_15860 hypothetical protein K20461 nukG; lantibiotic transport system permease protein D D3Y59_15865 ABC transporter ATP-binding protein K20459 nukF; lantibiotic transport system ATP-binding protein D D3Y59_02100 ABC transporter permease K09808 lolC_E; lipoprotein-releasing system permease protein D D3Y59_13350 ABC transporter permease K09808 lolC_E; lipoprotein-releasing system permease protein D D3Y59_07470 ABC transporter ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D D3Y59_10455 ABC transporter permease K02195 ccmC; heme exporter protein C D D3Y59_10460 ABC transporter permease K02194 ccmB; heme exporter protein B D D3Y59_04590 YjgP/YjgQ family permease K07091 lptF; lipopolysaccharide export system permease protein D D3Y59_09385 YjgP/YjgQ family permease K11720 lptG; lipopolysaccharide export system permease protein D D3Y59_13730 lptB; LPS export ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D D3Y59_00525 FtsX-like permease family protein K09811 ftsX; cell division transport system permease protein D D3Y59_06295 ATP-binding cassette domain-containing protein K09812 ftsE; cell division transport system ATP-binding protein D D3Y59_15680 ABC transporter ATP-binding protein K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D D3Y59_13945 ABC transporter ATP-binding protein K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump D D3Y59_13910 ABC transporter ATP-binding protein K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump C 02060 Phosphotransferase system (PTS) C 03070 Bacterial secretion system [PATH:hyh03070] D D3Y59_04215 TolC family protein K12340 tolC; outer membrane protein D D3Y59_17720 TolC family protein K12340 tolC; outer membrane protein D D3Y59_16745 protein translocase subunit SecDF K12257 secDF; SecD/SecF fusion protein D D3Y59_16070 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D D3Y59_03800 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D D3Y59_16250 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D D3Y59_13975 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D D3Y59_00665 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D D3Y59_16380 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D D3Y59_12200 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D D3Y59_06180 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D D3Y59_10785 twin-arginine translocase TatA/TatE family subunit K03116 tatA; sec-independent protein translocase protein TatA D D3Y59_10790 twin-arginine translocase TatA/TatE family subunit K03116 tatA; sec-independent protein translocase protein TatA D D3Y59_13375 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC B B 09132 Signal transduction C 02020 Two-component system [PATH:hyh02020] D D3Y59_16615 two-component sensor histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D D3Y59_16620 DNA-binding response regulator K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D D3Y59_17195 alkaline phosphatase family protein K01113 phoD; alkaline phosphatase D [EC:3.1.3.1] D D3Y59_14380 serine protease K04771 degP; serine protease Do [EC:3.4.21.107] D D3Y59_16415 Do family serine endopeptidase K04771 degP; serine protease Do [EC:3.4.21.107] D D3Y59_00380 heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9] D D3Y59_00005 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D D3Y59_00870 D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D D3Y59_15855 TonB-dependent receptor K19611 fepA; ferric enterobactin receptor D D3Y59_01690 peptidase S8 and S53 subtilisin kexin sedolisin K20486 nisP; lantibiotic leader peptide-processing serine protease [EC:3.4.21.-] D D3Y59_03905 glutamine synthetase type III K01915 glnA; glutamine synthetase [EC:6.3.1.2] D D3Y59_02230 sigma-54-dependent Fis family transcriptional regulator K07713 zraR; two-component system, NtrC family, response regulator HydG D D3Y59_06055 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D D3Y59_07585 dctA; C4-dicarboxylate transporter DctA K11103 dctA; aerobic C4-dicarboxylate transport protein D D3Y59_14315 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D D3Y59_16505 hypothetical protein K13924 cheBR; two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61] D D3Y59_05955 purine-binding chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D D3Y59_05940 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D D3Y59_05950 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D D3Y59_05945 hypothetical protein K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D D3Y59_16500 chemotaxis protein CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D D3Y59_01270 GAF domain-containing protein K11354 cph1; two-component system, chemotaxis family, sensor kinase Cph1 [EC:2.7.13.3] D D3Y59_02905 response regulator K11443 divK; two-component system, cell cycle response regulator DivK D D3Y59_06830 response regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D D3Y59_11730 ccoN; cytochrome-c oxidase, cbb3-type subunit I K15862 ccoNO; cytochrome c oxidase cbb3-type subunit I/II [EC:7.1.1.9] D D3Y59_11720 hypothetical protein K00406 ccoP; cytochrome c oxidase cbb3-type subunit III D D3Y59_04215 TolC family protein K12340 tolC; outer membrane protein D D3Y59_17720 TolC family protein K12340 tolC; outer membrane protein D D3Y59_07265 polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein D D3Y59_15805 polysaccharide biosynthesis tyrosine autokinase K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3] D D3Y59_07270 polysaccharide biosynthesis tyrosine autokinase K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3] D D3Y59_15515 RNA polymerase sigma-70 factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily D D3Y59_15535 DUF4974 domain-containing protein K07165 fecR; transmembrane sensor C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis D D3Y59_01230 arginase K01476 rocF; arginase [EC:3.5.3.1] B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:hyh02024] D D3Y59_06655 anthranilate synthase component I family protein K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D D3Y59_06650 aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D D3Y59_03225 PhzF family phenazine biosynthesis protein K06998 phzF; trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17] D D3Y59_15390 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D D3Y59_03060 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D D3Y59_06830 response regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D D3Y59_14120 ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D D3Y59_06150 DMT family transporter K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D D3Y59_10040 TolC family protein K18139 oprM; outer membrane protein, multidrug efflux system D D3Y59_11370 TolC family protein K18139 oprM; outer membrane protein, multidrug efflux system D D3Y59_08070 efflux transporter outer membrane subunit K18139 oprM; outer membrane protein, multidrug efflux system D D3Y59_17080 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D D3Y59_00685 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D D3Y59_17075 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D D3Y59_12085 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D D3Y59_06895 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D D3Y59_17070 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D D3Y59_13610 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D D3Y59_00665 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D D3Y59_07645 T9SS C-terminal target domain-containing protein K14645 K14645; serine protease [EC:3.4.21.-] D D3Y59_16745 protein translocase subunit SecDF K12257 secDF; SecD/SecF fusion protein D D3Y59_16070 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D D3Y59_03800 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D D3Y59_16250 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D D3Y59_13975 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D D3Y59_16380 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D D3Y59_12200 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D D3Y59_06180 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D D3Y59_01690 peptidase S8 and S53 subtilisin kexin sedolisin K20486 nisP; lantibiotic leader peptide-processing serine protease [EC:3.4.21.-] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis [PATH:hyh02030] D D3Y59_05940 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D D3Y59_05955 purine-binding chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D D3Y59_05950 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D D3Y59_05935 hypothetical protein K03410 cheC; chemotaxis protein CheC D D3Y59_05945 hypothetical protein K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D D3Y59_16500 chemotaxis protein CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D D3Y59_16505 hypothetical protein K13924 cheBR; two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61] D D3Y59_17165 hypothetical protein K02557 motB; chemotaxis protein MotB D D3Y59_05110 cell envelope biogenesis protein OmpA K02557 motB; chemotaxis protein MotB C 02040 Flagellar assembly [PATH:hyh02040] D D3Y59_17165 hypothetical protein K02557 motB; chemotaxis protein MotB D D3Y59_05110 cell envelope biogenesis protein OmpA K02557 motB; chemotaxis protein MotB D D3Y59_04575 sigma-70 family RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor D D3Y59_14315 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D D3Y59_16295 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism [PATH:hyh04980] D D3Y59_00145 cob(I)yrinic acid a,c-diamide adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D D3Y59_17540 meaB; methylmalonyl Co-A mutase-associated GTPase MeaB K07588 MMAA; GTPase [EC:3.6.5.-] D D3Y59_17660 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D D3Y59_17665 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D D3Y59_12555 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:hyh01501] D D3Y59_08950 glycosyl hydrolase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D D3Y59_00940 serine hydrolase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D D3Y59_17525 hypothetical protein K02172 blaR1; bla regulator protein blaR1 D D3Y59_14505 TonB family protein K02172 blaR1; bla regulator protein blaR1 D D3Y59_17520 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D D3Y59_14510 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D D3Y59_08565 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D D3Y59_17730 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D D3Y59_08570 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump D D3Y59_10040 TolC family protein K18139 oprM; outer membrane protein, multidrug efflux system D D3Y59_11370 TolC family protein K18139 oprM; outer membrane protein, multidrug efflux system D D3Y59_08070 efflux transporter outer membrane subunit K18139 oprM; outer membrane protein, multidrug efflux system D D3Y59_04215 TolC family protein K12340 tolC; outer membrane protein D D3Y59_17720 TolC family protein K12340 tolC; outer membrane protein D D3Y59_14875 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D D3Y59_17395 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D D3Y59_10375 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D D3Y59_11945 peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D D3Y59_04915 peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D D3Y59_07820 PASTA domain-containing protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D D3Y59_10080 bla; subclass B1 metallo-beta-lactamase K17837 bla2; metallo-beta-lactamase class B [EC:3.5.2.6] C 01502 Vancomycin resistance [PATH:hyh01502] D D3Y59_00870 D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D D3Y59_07440 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D D3Y59_15095 bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase K01798 alr-murF; Alr-MurF fusion protein [EC:5.1.1.1 6.3.2.10] D D3Y59_11195 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D D3Y59_07810 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D D3Y59_07795 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:hyh01503] D D3Y59_17470 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D D3Y59_04020 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D D3Y59_12580 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D D3Y59_14380 serine protease K04771 degP; serine protease Do [EC:3.4.21.107] D D3Y59_16415 Do family serine endopeptidase K04771 degP; serine protease Do [EC:3.4.21.107] D D3Y59_08565 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D D3Y59_17730 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D D3Y59_08570 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump D D3Y59_04215 TolC family protein K12340 tolC; outer membrane protein D D3Y59_17720 TolC family protein K12340 tolC; outer membrane protein D D3Y59_05380 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:hyh01000] C 01001 Protein kinases [BR:hyh01001] D D3Y59_07445 PASTA domain-containing protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D D3Y59_16670 ATP-binding protein K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1] D D3Y59_13540 ATP-binding protein K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1] D D3Y59_15805 polysaccharide biosynthesis tyrosine autokinase K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3] D D3Y59_07270 polysaccharide biosynthesis tyrosine autokinase K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3] D D3Y59_16615 two-component sensor histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D D3Y59_08535 sensor histidine kinase K02480 K02480; two-component system, NarL family, sensor kinase [EC:2.7.13.3] D D3Y59_01490 hypothetical protein K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3] D D3Y59_01525 histidine kinase K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3] D D3Y59_07100 sensor histidine kinase K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3] D D3Y59_17140 hypothetical protein K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D D3Y59_05940 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D D3Y59_01270 GAF domain-containing protein K11354 cph1; two-component system, chemotaxis family, sensor kinase Cph1 [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:hyh01009] D D3Y59_15980 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D D3Y59_02930 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D D3Y59_14805 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG C 01002 Peptidases and inhibitors [BR:hyh01002] D D3Y59_13605 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36] D D3Y59_06320 glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D D3Y59_00550 hypothetical protein K20742 ykfC; gamma-D-glutamyl-L-lysine dipeptidyl-peptidase [EC:3.4.14.13] D D3Y59_15025 NlpC/P60 family protein K13695 nlpC; probable lipoprotein NlpC D D3Y59_09170 NlpC/P60 family protein K13695 nlpC; probable lipoprotein NlpC D D3Y59_11415 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D D3Y59_13785 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D D3Y59_09155 asnB; asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D D3Y59_11520 type 1 glutamine amidotransferase K05520 yhbO; deglycase [EC:3.5.1.124] D D3Y59_03655 murein L,D-transpeptidase K21470 ycbB; L,D-transpeptidase YcbB D D3Y59_04630 hypothetical protein K21470 ycbB; L,D-transpeptidase YcbB D D3Y59_06250 CPBP family intramembrane metalloprotease K07052 K07052; CAAX protease family protein D D3Y59_14085 CPBP family intramembrane metalloprotease K07052 K07052; CAAX protease family protein D D3Y59_03650 M1 family peptidase K01254 LTA4H; leukotriene-A4 hydrolase [EC:3.3.2.6] D D3Y59_02370 aminopeptidase K01256 pepN; aminopeptidase N [EC:3.4.11.2] D D3Y59_16040 M1 family peptidase K01256 pepN; aminopeptidase N [EC:3.4.11.2] D D3Y59_03365 peptidase K01283 ACE; peptidyl-dipeptidase A [EC:3.4.15.1] D D3Y59_02720 M3 family peptidase K01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5] D D3Y59_02115 M3 family oligoendopeptidase K08602 pepF; oligoendopeptidase F [EC:3.4.24.-] D D3Y59_04295 T9SS C-terminal target domain-containing protein K01400 nprE; bacillolysin [EC:3.4.24.28] D D3Y59_12955 M13 family peptidase K07386 pepO; putative endopeptidase [EC:3.4.24.-] D D3Y59_12960 M13 family peptidase K07386 pepO; putative endopeptidase [EC:3.4.24.-] D D3Y59_08515 M13 family peptidase K07386 pepO; putative endopeptidase [EC:3.4.24.-] D D3Y59_11320 M13 family peptidase K07386 pepO; putative endopeptidase [EC:3.4.24.-] D D3Y59_00870 D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D D3Y59_13220 insulinase family protein K07263 pqqL; zinc protease [EC:3.4.24.-] D D3Y59_10495 insulinase family protein K07263 pqqL; zinc protease [EC:3.4.24.-] D D3Y59_11910 insulinase family protein K07263 pqqL; zinc protease [EC:3.4.24.-] D D3Y59_12535 insulinase family protein K07263 pqqL; zinc protease [EC:3.4.24.-] D D3Y59_12540 insulinase family protein K07263 pqqL; zinc protease [EC:3.4.24.-] D D3Y59_05845 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D D3Y59_11045 membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D D3Y59_02260 amidohydrolase K12941 abgB; aminobenzoyl-glutamate utilization protein B D D3Y59_05090 peptidase M23 K21472 lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-] D D3Y59_16255 map; type I methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D D3Y59_17290 M24 family metallopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D D3Y59_12215 aminopeptidase P family protein K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D D3Y59_10830 M28 family peptidase K19701 ywaD; aminopeptidase YwaD [EC:3.4.11.6 3.4.11.10] D D3Y59_10915 T9SS C-terminal target domain-containing protein K01417 MEP; extracellular elastinolytic metalloproteinase [EC:3.4.24.-] D D3Y59_17130 T9SS C-terminal target domain-containing protein K01417 MEP; extracellular elastinolytic metalloproteinase [EC:3.4.24.-] D D3Y59_17065 ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein K08956 AFG3; AFG3 family protein [EC:3.4.24.-] D D3Y59_04690 peptidase M48 K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-] D D3Y59_01550 dihydrofolate reductase K01277 DPP3; dipeptidyl-peptidase III [EC:3.4.14.4] D D3Y59_00055 rseP; RIP metalloprotease RseP K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D D3Y59_17525 hypothetical protein K02172 blaR1; bla regulator protein blaR1 D D3Y59_14505 TonB family protein K02172 blaR1; bla regulator protein blaR1 D D3Y59_03370 peptidase K09933 mtfA; MtfA peptidase D D3Y59_14380 serine protease K04771 degP; serine protease Do [EC:3.4.21.107] D D3Y59_16415 Do family serine endopeptidase K04771 degP; serine protease Do [EC:3.4.21.107] D D3Y59_01690 peptidase S8 and S53 subtilisin kexin sedolisin K20486 nisP; lantibiotic leader peptide-processing serine protease [EC:3.4.21.-] D D3Y59_07645 T9SS C-terminal target domain-containing protein K14645 K14645; serine protease [EC:3.4.21.-] D D3Y59_01665 T9SS C-terminal target domain-containing protein K17734 aprX; serine protease AprX [EC:3.4.21.-] D D3Y59_05105 hypothetical protein K17734 aprX; serine protease AprX [EC:3.4.21.-] D D3Y59_02445 T9SS C-terminal target domain-containing protein K17734 aprX; serine protease AprX [EC:3.4.21.-] D D3Y59_14730 S9 family peptidase K01322 PREP; prolyl oligopeptidase [EC:3.4.21.26] D D3Y59_08250 S9 family peptidase K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5] D D3Y59_14220 S9 family peptidase K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5] D D3Y59_00640 peptidase S13 K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D D3Y59_02580 ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D D3Y59_01105 ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D D3Y59_00075 lon; endopeptidase La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D D3Y59_07655 hypothetical protein K03503 umuD; DNA polymerase V [EC:3.4.21.-] D D3Y59_00620 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D D3Y59_08585 alpha/beta hydrolase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D D3Y59_12915 alpha/beta hydrolase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D D3Y59_07130 alpha/beta fold hydrolase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D D3Y59_08835 alpha/beta fold hydrolase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D D3Y59_09620 alpha/beta hydrolase K22369 EPHX4; epoxide hydrolase 4 [EC:3.3.-.-] D D3Y59_10555 S41 family peptidase K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D D3Y59_08780 tail-specific protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D D3Y59_12355 S41 family peptidase K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D D3Y59_08860 tail-specific protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D D3Y59_14525 penicillin acylase family protein K01434 pac; penicillin G amidase [EC:3.5.1.11] D D3Y59_08120 sppA; signal peptide peptidase SppA K04773 sppA; protease IV [EC:3.4.21.-] D D3Y59_14605 cyanophycinase K13282 cphB; cyanophycinase [EC:3.4.15.6] D D3Y59_03645 cyanophycinase K13282 cphB; cyanophycinase [EC:3.4.15.6] D D3Y59_16480 cyanophycinase K13282 cphB; cyanophycinase [EC:3.4.15.6] D D3Y59_08340 cyanophycinase K13282 cphB; cyanophycinase [EC:3.4.15.6] D D3Y59_08940 rhomboid family intramembrane serine protease K07059 K07059; rhomboid family protein D D3Y59_08935 rhomboid family intramembrane serine protease K07059 K07059; rhomboid family protein D D3Y59_10660 LD-carboxypeptidase K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13] D D3Y59_01620 hslV; ATP-dependent protease subunit HslV K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] D D3Y59_17230 isoaspartyl peptidase/L-asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D D3Y59_03640 isoaspartyl peptidase/L-asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D D3Y59_04785 isoaspartyl peptidase/L-asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D D3Y59_00795 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D D3Y59_14450 TldD/PmbA family protein K03568 tldD; TldD protein D D3Y59_14460 TldD/PmbA family protein K03568 tldD; TldD protein D D3Y59_09570 alpha-2-macroglobulin family protein K06894 yfhM; alpha-2-macroglobulin C 01003 Glycosyltransferases [BR:hyh01003] D D3Y59_01210 polyprenol monophosphomannose synthase K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83] D D3Y59_06855 glycosyltransferase K19003 mgdA; 1,2-diacylglycerol 3-beta-glucosyltransferase [EC:2.4.1.336] D D3Y59_01340 glycosyltransferase K00693 GYS; glycogen synthase [EC:2.4.1.11] D D3Y59_13795 glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21] D D3Y59_04710 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D D3Y59_09585 pbpC; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D D3Y59_14875 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D D3Y59_17395 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D D3Y59_07380 glycosyltransferase K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187] D D3Y59_14830 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D D3Y59_12655 bifunctional alpha,alpha-trehalose-phosphate synthase (UDP-forming)/trehalose-phosphatase K16055 TPS; trehalose 6-phosphate synthase/phosphatase [EC:2.4.1.15 3.1.3.12] C 01005 Lipopolysaccharide biosynthesis proteins [BR:hyh01005] D D3Y59_05380 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D D3Y59_01095 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D D3Y59_05375 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/3-hydroxyacyl-ACP dehydratase K16363 lpxC-fabZ; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase / 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:3.5.1.108 4.2.1.59] D D3Y59_05370 lpxD; UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D D3Y59_16985 UDP-2,3-diacylglucosamine diphosphatase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D D3Y59_03850 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D D3Y59_08675 lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D D3Y59_05595 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D D3Y59_00600 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D D3Y59_03275 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D D3Y59_10420 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D D3Y59_17025 KpsF/GutQ family sugar-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D D3Y59_08220 D-glycero-beta-D-manno-heptose-7-phosphate kinase K21344 rfaE1; D-glycero-beta-D-manno-heptose-7-phosphate kinase [EC:2.7.1.167] D D3Y59_13815 rfaE2; D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase K21345 rfaE2; D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase [EC:2.7.7.70] D D3Y59_17285 glycosyltransferase family 9 protein K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24] D D3Y59_16000 hypothetical protein K02847 waaL; O-antigen ligase [EC:2.4.99.26] D D3Y59_16145 O-antigen ligase family protein K02847 waaL; O-antigen ligase [EC:2.4.99.26] D D3Y59_15670 D-sedoheptulose 7-phosphate isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D D3Y59_01220 HAD family hydrolase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D D3Y59_01055 rfaD; ADP-glyceromanno-heptose 6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20] D D3Y59_03510 glycosyltransferase K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-] D D3Y59_09060 glycosyltransferase K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-] D D3Y59_14240 glycosyltransferase K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-] D D3Y59_14830 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:hyh01011] D D3Y59_05915 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D D3Y59_03315 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D D3Y59_07790 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D D3Y59_07440 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D D3Y59_07805 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D D3Y59_07815 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D D3Y59_15095 bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase K01798 alr-murF; Alr-MurF fusion protein [EC:5.1.1.1 6.3.2.10] D D3Y59_01985 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D D3Y59_10660 LD-carboxypeptidase K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13] D D3Y59_07810 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D D3Y59_07795 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D D3Y59_00515 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D D3Y59_14875 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D D3Y59_17395 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D D3Y59_09585 pbpC; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D D3Y59_10375 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D D3Y59_11945 peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D D3Y59_04915 peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D D3Y59_07820 PASTA domain-containing protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D D3Y59_00640 peptidase S13 K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D D3Y59_04710 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D D3Y59_03655 murein L,D-transpeptidase K21470 ycbB; L,D-transpeptidase YcbB D D3Y59_04630 hypothetical protein K21470 ycbB; L,D-transpeptidase YcbB D D3Y59_00870 D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D D3Y59_05090 peptidase M23 K21472 lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-] D D3Y59_10800 LysM peptidoglycan-binding domain-containing protein K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29] D D3Y59_08660 mltG; endolytic transglycosylase MltG K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] D D3Y59_00225 mltG; endolytic transglycosylase MltG K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] D D3Y59_14530 septal ring lytic transglycosylase RlpA family protein K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D D3Y59_13035 septal ring lytic transglycosylase RlpA family protein K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D D3Y59_17470 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D D3Y59_04020 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D D3Y59_12580 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] C 01004 Lipid biosynthesis proteins [BR:hyh01004] D D3Y59_07730 fabD; [acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D D3Y59_05875 ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D D3Y59_04800 ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D D3Y59_09325 fabF; beta-ketoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D D3Y59_07165 beta-ketoacyl-ACP reductase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D D3Y59_08145 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D D3Y59_14260 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D D3Y59_05375 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/3-hydroxyacyl-ACP dehydratase K16363 lpxC-fabZ; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase / 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:3.5.1.108 4.2.1.59] D D3Y59_08885 SDR family oxidoreductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D D3Y59_13270 arylesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D D3Y59_01670 acyl-CoA desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1] D D3Y59_17450 acyl-CoA desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1] D D3Y59_05665 acyl-ACP desaturase K03921 FAB2; acyl-[acyl-carrier-protein] desaturase [EC:1.14.19.2 1.14.19.11 1.14.19.26] D D3Y59_00565 acyl-CoA desaturase K00508 E1.14.19.3; linoleoyl-CoA desaturase [EC:1.14.19.3] D D3Y59_05260 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D D3Y59_05265 propionyl-CoA synthetase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17] D D3Y59_15390 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D D3Y59_03060 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D D3Y59_13180 glycerol acyltransferase K13507 GAT; glycerol-3-phosphate O-acyltransferase / dihydroxyacetone phosphate acyltransferase [EC:2.3.1.15 2.3.1.42] D D3Y59_05870 plsX; phosphate acyltransferase PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D D3Y59_15610 plsY; glycerol-3-phosphate 1-O-acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D D3Y59_00165 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins [BR:hyh01008] C 01006 Prenyltransferases [BR:hyh01006] D D3Y59_13620 polyprenyl synthetase family protein K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D D3Y59_07710 polyprenyl synthetase family protein K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D D3Y59_15205 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D D3Y59_07880 phytoene/squalene synthase family protein K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32] D D3Y59_02920 miaA; tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D D3Y59_01255 1,4-dihydroxy-2-naphthoate polyprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] D D3Y59_00385 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] C 01007 Amino acid related enzymes [BR:hyh01007] D D3Y59_13760 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D D3Y59_09960 hypothetical protein K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D D3Y59_04540 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D D3Y59_01310 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D D3Y59_10670 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D D3Y59_01240 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D D3Y59_09450 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D D3Y59_13600 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D D3Y59_05420 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D D3Y59_03950 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D D3Y59_08790 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D D3Y59_10275 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D D3Y59_14320 asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D D3Y59_06090 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D D3Y59_13585 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D D3Y59_17335 serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D D3Y59_14200 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D D3Y59_04620 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D D3Y59_04060 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D D3Y59_11925 phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D D3Y59_09780 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D D3Y59_09905 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D D3Y59_08230 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D D3Y59_05330 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D D3Y59_11180 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K14287 ybdL; methionine transaminase [EC:2.6.1.88] D D3Y59_04420 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D D3Y59_12115 kbl; glycine C-acetyltransferase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29] D D3Y59_04550 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29] D D3Y59_07150 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D D3Y59_13320 pyridoxal phosphate-dependent aminotransferase family protein K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D D3Y59_12230 rocD; ornithine--oxo-acid transaminase K00819 rocD; ornithine--oxo-acid transaminase [EC:2.6.1.13] D D3Y59_07160 bioA; adenosylmethionine--8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D D3Y59_06405 hemL; glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D D3Y59_07355 glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D D3Y59_11040 amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D D3Y59_00140 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D D3Y59_05500 alanine--glyoxylate aminotransferase family protein K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D D3Y59_06280 DegT/DnrJ/EryC1/StrS family aminotransferase K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98] D D3Y59_09065 dTDP-4-amino-4,6-dideoxygalactose transaminase K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins [BR:hyh00194] D D3Y59_11210 hypothetical protein K08906 petJ; cytochrome c6 D D3Y59_09420 atpC; ATP synthase F1 subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D D3Y59_09425 atpD; F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D D3Y59_14920 atpG; ATP synthase F1 subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D D3Y59_14915 F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D D3Y59_14910 atpH; ATP synthase F1 subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D D3Y59_14905 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b D D3Y59_14900 atpE; ATP synthase F0 subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c D D3Y59_14895 atpB; ATP synthase F0 subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a D D3Y59_14885 AtpZ/AtpI family protein K02116 atpI; ATP synthase protein I B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:hyh03000] D D3Y59_13830 AraC family transcriptional regulator K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein D D3Y59_07945 AraC family transcriptional regulator K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA D D3Y59_16540 helix-turn-helix domain-containing protein K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA D D3Y59_17985 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator D D3Y59_15940 helix-turn-helix domain-containing protein K07506 K07506; AraC family transcriptional regulator D D3Y59_03745 methylated-DNA--[protein]-cysteine S-methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D D3Y59_02620 methylated-DNA--[protein]-cysteine S-methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D D3Y59_12525 LysR family transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D D3Y59_16555 LysR family transcriptional regulator K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon D D3Y59_02255 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D D3Y59_02285 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D D3Y59_02855 TetR/AcrR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator D D3Y59_02805 TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D D3Y59_02150 TetR/AcrR family transcriptional regulator K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator D D3Y59_17235 winged helix-turn-helix transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D D3Y59_09990 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D D3Y59_15400 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D D3Y59_07895 MerR family transcriptional regulator K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator D D3Y59_01125 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D D3Y59_05585 transcriptional repressor K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator D D3Y59_06830 response regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D D3Y59_14185 Crp/Fnr family transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D D3Y59_03045 Crp/Fnr family transcriptional regulator K21562 flp; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D D3Y59_10150 transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D D3Y59_07530 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D D3Y59_18060 ArsR family transcriptional regulator K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor D D3Y59_17705 ArsR family transcriptional regulator K22043 czrA; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor D D3Y59_00230 XRE family transcriptional regulator K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator D D3Y59_02070 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator D D3Y59_04805 metal-dependent transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D D3Y59_17520 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D D3Y59_14510 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D D3Y59_17055 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D D3Y59_05700 cytidyltransferase-like domain-containing protein K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22] D D3Y59_05855 XRE family transcriptional regulator K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D D3Y59_16815 transcriptional regulator K07727 K07727; putative transcriptional regulator D D3Y59_00635 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D D3Y59_04270 YqgE/AlgH family protein K07735 algH; putative transcriptional regulator D D3Y59_13675 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor D D3Y59_07835 mraZ; division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ C 03021 Transcription machinery [BR:hyh03021] D D3Y59_16285 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D D3Y59_16100 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D D3Y59_16105 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D D3Y59_04575 sigma-70 family RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor D D3Y59_08995 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D D3Y59_11150 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D D3Y59_09370 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D D3Y59_02955 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D D3Y59_15515 RNA polymerase sigma-70 factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily D D3Y59_14315 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D D3Y59_10695 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA D D3Y59_13955 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB D D3Y59_16075 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG D D3Y59_06890 serine/threonine protein phosphatase K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3] D D3Y59_02695 sensor histidine kinase K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3] D D3Y59_06010 alpha/beta hydrolase K19707 rsbQ; sigma-B regulation protein RsbQ D D3Y59_02690 alpha/beta hydrolase K19707 rsbQ; sigma-B regulation protein RsbQ D D3Y59_03290 alpha/beta hydrolase K19707 rsbQ; sigma-B regulation protein RsbQ D D3Y59_16675 anti-sigma factor antagonist K04749 rsbV; anti-sigma B factor antagonist D D3Y59_01130 anti-sigma factor antagonist K04749 rsbV; anti-sigma B factor antagonist D D3Y59_01330 anti-sigma factor antagonist K04749 rsbV; anti-sigma B factor antagonist D D3Y59_16670 ATP-binding protein K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1] D D3Y59_13540 ATP-binding protein K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1] D D3Y59_13675 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor D D3Y59_05830 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA D D3Y59_09610 transcription elongation factor GreAB K04760 greB; transcription elongation factor GreB D D3Y59_17340 transcription termination factor Rho K03628 rho; transcription termination factor Rho D D3Y59_14330 hypothetical protein K19000 rof; Rho-binding antiterminator C 03019 Messenger RNA biogenesis [BR:hyh03019] D D3Y59_15465 Rne/Rng family ribonuclease K08301 rng; ribonuclease G [EC:3.1.26.-] D D3Y59_09320 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D D3Y59_09765 rny; ribonuclease Y K18682 rny; ribonucrease Y [EC:3.1.-.-] D D3Y59_13615 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D D3Y59_10595 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D D3Y59_03670 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D D3Y59_01280 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D D3Y59_03545 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D D3Y59_03335 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D D3Y59_07460 RecQ family ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D D3Y59_17020 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D D3Y59_16295 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D D3Y59_04580 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D D3Y59_17340 transcription termination factor Rho K03628 rho; transcription termination factor Rho D D3Y59_02930 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D D3Y59_08180 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D D3Y59_03790 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D D3Y59_11235 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D D3Y59_02060 HD domain-containing protein K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] D D3Y59_16700 hrpB; ATP-dependent helicase HrpB K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6] C 03041 Spliceosome C 03011 Ribosome [BR:hyh03011] D D3Y59_00570 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D D3Y59_16580 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D D3Y59_16180 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D D3Y59_16280 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D D3Y59_16235 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D D3Y59_00335 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D D3Y59_16130 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D D3Y59_16220 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D D3Y59_16575 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D D3Y59_16140 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D D3Y59_16275 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D D3Y59_16125 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D D3Y59_16270 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D D3Y59_16215 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D D3Y59_04585 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D D3Y59_17445 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D D3Y59_16195 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D D3Y59_00330 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D D3Y59_16170 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D D3Y59_09345 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D D3Y59_15790 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D D3Y59_15655 30S ribosomal protein THX K19033 PSRP4; 30S ribosomal protein S31 D D3Y59_16085 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D D3Y59_16165 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D D3Y59_16150 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D D3Y59_16155 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D D3Y59_16210 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D D3Y59_16225 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D D3Y59_00325 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D D3Y59_16090 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D D3Y59_16080 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D D3Y59_16095 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D D3Y59_16570 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D D3Y59_16200 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D D3Y59_16245 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D D3Y59_16185 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D D3Y59_16290 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D D3Y59_16230 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D D3Y59_17430 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D D3Y59_04605 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D D3Y59_12800 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D D3Y59_16175 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D D3Y59_16160 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D D3Y59_16205 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D D3Y59_12795 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D D3Y59_12220 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D D3Y59_16190 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D D3Y59_16240 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D D3Y59_16880 type B 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D D3Y59_05865 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D D3Y59_12210 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D D3Y59_10565 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D D3Y59_04610 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D D3Y59_16265 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D D3Y59_09440 50S ribosomal protein L25/general stress protein Ctc K02897 RP-L25; large subunit ribosomal protein L25 D D3Y59_10500 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D D3Y59_12605 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D D3Y59_04290 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D D3Y59_01160 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D D3Y59_10520 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D D3Y59_12615 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D D3Y59_01140 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D D3Y59_04280 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D D3Y59_10505 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D D3Y59_12610 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D D3Y59_01155 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D D3Y59_04285 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:hyh03009] D D3Y59_09320 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D D3Y59_03985 IGHMBP2 family helicase K19036 IGHMBP2; ATP-dependent RNA/DNA helicase IGHMBP2 [EC:5.6.2.5 5.6.2.3] D D3Y59_15355 GTPase Era K03595 era; GTPase D D3Y59_09015 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-] D D3Y59_13675 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor D D3Y59_10695 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA D D3Y59_13955 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB D D3Y59_16075 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG D D3Y59_05840 rsmA; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D D3Y59_03760 16S rRNA (uracil(1498)-N(3))-methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D D3Y59_09365 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D D3Y59_07830 rsmH; 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D D3Y59_15120 SAM-dependent methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D D3Y59_13410 rsmI; 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D D3Y59_17035 rlmB; 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D D3Y59_10910 TrmH family RNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D D3Y59_11645 rlmF; 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181] D D3Y59_16345 oxidoreductase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D D3Y59_13305 class I SAM-dependent rRNA methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D D3Y59_12145 rlmN; 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D D3Y59_02190 rlmD; 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D D3Y59_13680 pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D D3Y59_16565 RluA family pseudouridine synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D D3Y59_15225 RluA family pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D D3Y59_17455 RluA family pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D D3Y59_11620 pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] D D3Y59_08170 pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] D D3Y59_07140 rluF; 23S rRNA pseudouridine(2604) synthase RluF K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] D D3Y59_09670 30S ribosomal protein S6--L-glutamate ligase K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-] D D3Y59_11015 N-acetyltransferase K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-] D D3Y59_17440 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM D D3Y59_12190 rimO; 30S ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] D D3Y59_15580 50S ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] D D3Y59_15465 Rne/Rng family ribonuclease K08301 rng; ribonuclease G [EC:3.1.26.-] D D3Y59_12360 ruvX; Holliday junction resolvase RuvX K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D D3Y59_03385 DEAD/DEAH box helicase K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6] D D3Y59_03545 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D D3Y59_05600 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D D3Y59_15360 ribosome biogenesis GTPase Der K03977 engA; GTPase D D3Y59_11215 hflX; GTPase HflX K03665 hflX; GTPase D D3Y59_02055 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D D3Y59_10105 threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D D3Y59_01120 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D D3Y59_13360 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A D D3Y59_10690 ribosome maturation factor K09748 rimP; ribosome maturation factor RimP D D3Y59_17060 rsfS; ribosome silencing factor K09710 ybeB; ribosome-associated protein D D3Y59_13545 ybeY; rRNA maturation RNase YbeY K07042 ybeY; probable rRNA maturation factor D D3Y59_15780 raiA; ribosome-associated translation inhibitor RaiA K05808 hpf; ribosome hibernation promoting factor D D3Y59_01725 ychF; redox-regulated ATPase YchF K06942 ychF; ribosome-binding ATPase D D3Y59_05860 DUF177 domain-containing protein K07040 yceD; DUF177 domain-containing protein C 03016 Transfer RNA biogenesis [BR:hyh03016] D D3Y59_01325 ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11] D D3Y59_02840 RtcB family protein K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8] D D3Y59_13760 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D D3Y59_14200 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D D3Y59_13600 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D D3Y59_03950 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D D3Y59_09450 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D D3Y59_01240 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D D3Y59_08790 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D D3Y59_10275 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D D3Y59_04060 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D D3Y59_14320 asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D D3Y59_13585 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D D3Y59_04620 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D D3Y59_17335 serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D D3Y59_10670 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D D3Y59_05420 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D D3Y59_06090 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D D3Y59_11925 phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D D3Y59_09780 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D D3Y59_04540 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D D3Y59_01310 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D D3Y59_00215 D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D D3Y59_04475 trmB; tRNA (guanosine(46)-N7)-methyltransferase TrmB K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D D3Y59_13900 truA; tRNA pseudouridine(38-40) synthase TruA K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D D3Y59_00510 truB; tRNA pseudouridine(55) synthase TruB K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D D3Y59_02045 IscS subfamily cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D D3Y59_15280 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D D3Y59_02055 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D D3Y59_10105 threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D D3Y59_02920 miaA; tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D D3Y59_04810 mnmE; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D D3Y59_13555 mnmG; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D D3Y59_15140 selD; selenide, water dikinase SelD K01008 selD; selenide, water dikinase [EC:2.7.9.3] D D3Y59_10560 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D D3Y59_06710 rnpB; RNase P RNA component class A K01978 rnpB; M1 RNA D D3Y59_00245 hypothetical protein K03684 rnd; ribonuclease D [EC:3.1.13.5] D D3Y59_13465 RNA 2'-phosphotransferase K07559 kptA; putative RNA 2'-phosphotransferase [EC:2.7.1.-] D D3Y59_12450 ettA; energy-dependent translational throttle protein EttA K06020 ettA; energy-dependent translational throttle protein EttA D D3Y59_09960 hypothetical protein K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D D3Y59_10300 nucleoside deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D D3Y59_14080 dusB; tRNA dihydrouridine synthase DusB K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D D3Y59_03820 miaB; tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D D3Y59_03890 mtaB; tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase MtaB K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5] D D3Y59_17435 trmD; tRNA (guanosine(37)-N1)-methyltransferase TrmD K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D D3Y59_05515 methyltransferase domain-containing protein K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223] D D3Y59_04160 RNA methyltransferase K03437 spoU; RNA methyltransferase, TrmH family D D3Y59_09495 RNA methyltransferase K03437 spoU; RNA methyltransferase, TrmH family D D3Y59_04460 mnmA; tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D D3Y59_02030 iron-sulfur cluster assembly accessory protein K13628 iscA; iron-sulfur cluster assembly protein D D3Y59_08965 iron-sulfur cluster assembly accessory protein K13628 iscA; iron-sulfur cluster assembly protein D D3Y59_03860 tRNA-(ms[2]io[6]A)-hydroxylase K06169 miaE; tRNA 2-(methylsulfanyl)-N6-isopentenyladenosine37 hydroxylase [EC:1.14.99.69] D D3Y59_12485 queA; tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D D3Y59_00295 S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D D3Y59_17410 6-carboxytetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D D3Y59_01090 6-carboxytetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D D3Y59_04840 7-carboxy-7-deazaguanine synthase QueE K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D D3Y59_16820 queG; tRNA epoxyqueuosine(34) reductase QueG K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6] D D3Y59_15150 mnmH; tRNA 2-selenouridine(34) synthase MnmH K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3] D D3Y59_09380 tRNA guanosine(34) transglycosylase Tgt K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D D3Y59_08925 tilS; tRNA lysidine(34) synthetase TilS K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D D3Y59_10550 tsaB; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D D3Y59_00535 tsaD; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D D3Y59_05325 tsaE; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D D3Y59_13615 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D D3Y59_04580 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:hyh03012] D D3Y59_03265 translation initiation factor K03113 EIF1; translation initiation factor 1 D D3Y59_10700 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D D3Y59_04615 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D D3Y59_01700 ABC transporter ATP-binding protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 D D3Y59_03985 IGHMBP2 family helicase K19036 IGHMBP2; ATP-dependent RNA/DNA helicase IGHMBP2 [EC:5.6.2.5 5.6.2.3] D D3Y59_16585 elongation factor Ts K02357 tsf; elongation factor Ts D D3Y59_16060 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D D3Y59_16135 fusA; elongation factor G K02355 fusA; elongation factor G D D3Y59_13450 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1 D D3Y59_16025 ribosome recycling factor K02838 frr; ribosome recycling factor D D3Y59_14125 prmC; peptide chain release factor N(5)-glutamine methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D D3Y59_09445 aminoacyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D D3Y59_16260 translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D D3Y59_05880 efp; elongation factor P K02356 efp; elongation factor P D D3Y59_00135 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2 D D3Y59_14585 aminoacyl-tRNA hydrolase K15034 yaeJ; ribosome-associated protein C 03110 Chaperones and folding catalysts [BR:hyh03110] D D3Y59_10090 clpB; ATP-dependent chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB D D3Y59_08690 ATP-dependent Clp protease ATP-binding subunit K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC D D3Y59_01100 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D D3Y59_00085 hslU; ATP-dependent protease ATPase subunit HslU K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU D D3Y59_14805 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG D D3Y59_08180 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D D3Y59_16320 dnaK; molecular chaperone DnaK K04044 hscA; molecular chaperone HscA D D3Y59_03790 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D D3Y59_09000 dnaJ; molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ D D3Y59_13050 J domain-containing protein K05516 cbpA; curved DNA-binding protein D D3Y59_07935 hscB; Fe-S protein assembly co-chaperone HscB K04082 hscB; molecular chaperone HscB D D3Y59_09005 nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE D D3Y59_13010 Hsp20/alpha crystallin family protein K13993 HSP20; HSP20 family protein D D3Y59_13020 Hsp20/alpha crystallin family protein K13993 HSP20; HSP20 family protein D D3Y59_16410 Hsp20/alpha crystallin family protein K13993 HSP20; HSP20 family protein D D3Y59_03795 co-chaperone GroES K04078 groES; chaperonin GroES D D3Y59_14380 serine protease K04771 degP; serine protease Do [EC:3.4.21.107] D D3Y59_16415 Do family serine endopeptidase K04771 degP; serine protease Do [EC:3.4.21.107] D D3Y59_17065 ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein K08956 AFG3; AFG3 family protein [EC:3.4.24.-] D D3Y59_14895 atpB; ATP synthase F0 subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a D D3Y59_08010 hypothetical protein K06006 cpxP; periplasmic protein CpxP/Spy D D3Y59_07645 T9SS C-terminal target domain-containing protein K14645 K14645; serine protease [EC:3.4.21.-] D D3Y59_00440 beta-hexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D D3Y59_05615 peptidylprolyl isomerase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] D D3Y59_13705 peptidylprolyl isomerase K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8] D D3Y59_10330 FKBP-type peptidyl-prolyl cis-trans isomerase K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8] D D3Y59_04960 FKBP-type peptidyl-prolyl cis-trans isomerase K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8] D D3Y59_03980 peptidylprolyl isomerase K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] D D3Y59_16660 peptidylprolyl isomerase K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8] D D3Y59_16665 peptidylprolyl isomerase K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8] D D3Y59_17245 trxA; thioredoxin K03671 TXN; thioredoxin D D3Y59_08045 trxA; thioredoxin K03671 TXN; thioredoxin D D3Y59_13275 thioredoxin K03671 TXN; thioredoxin C 04131 Membrane trafficking [BR:hyh04131] D D3Y59_10320 nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D D3Y59_03255 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D D3Y59_09340 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D D3Y59_14805 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG D D3Y59_06790 MFS transporter K06902 UMF1; MFS transporter, UMF1 family C 04121 Ubiquitin system C 03051 Proteasome [BR:hyh03051] D D3Y59_14805 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG C 03032 DNA replication proteins [BR:hyh03032] D D3Y59_05510 ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D D3Y59_15455 integration host factor subunit beta K03530 hupB; DNA-binding protein HU-beta D D3Y59_00005 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D D3Y59_03025 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D D3Y59_05210 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D D3Y59_15445 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D D3Y59_03635 DUF3127 domain-containing protein K03111 ssb; single-strand DNA-binding protein D D3Y59_17250 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D D3Y59_06430 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D D3Y59_04530 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D D3Y59_16895 DNA polymerase III subunit delta K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D D3Y59_04670 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D D3Y59_00430 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D D3Y59_17850 DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D D3Y59_09870 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D D3Y59_00180 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D D3Y59_14640 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D D3Y59_05050 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D D3Y59_04355 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D D3Y59_06000 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D D3Y59_04640 DNA gyrase/topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D D3Y59_04655 type IIA DNA topoisomerase subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D D3Y59_05965 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D D3Y59_04685 DNA topoisomerase IB K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D D3Y59_07240 type IA DNA topoisomerase K03169 topB; DNA topoisomerase III [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:hyh03036] D D3Y59_09320 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D D3Y59_15455 integration host factor subunit beta K03530 hupB; DNA-binding protein HU-beta D D3Y59_13050 J domain-containing protein K05516 cbpA; curved DNA-binding protein D D3Y59_00005 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D D3Y59_02875 DNA starvation/stationary phase protection protein K04047 dps; starvation-inducible DNA-binding protein D D3Y59_01060 DNA starvation/stationary phase protection protein K04047 dps; starvation-inducible DNA-binding protein D D3Y59_07780 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA D D3Y59_16300 septum formation initiator family protein K13052 divIC; cell division protein DivIC D D3Y59_06295 ATP-binding cassette domain-containing protein K09812 ftsE; cell division transport system ATP-binding protein D D3Y59_07820 PASTA domain-containing protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D D3Y59_05480 DNA translocase FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D D3Y59_07785 hypothetical protein K03589 ftsQ; cell division protein FtsQ D D3Y59_07800 cell division protein FtsW K03588 ftsW; cell division protein FtsW D D3Y59_00525 FtsX-like permease family protein K09811 ftsX; cell division transport system permease protein D D3Y59_07775 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D D3Y59_09770 zapA; cell division protein ZapA K09888 zapA; cell division protein ZapA D D3Y59_17470 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D D3Y59_04020 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D D3Y59_12580 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D D3Y59_08565 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D D3Y59_17730 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D D3Y59_17510 DivIVA domain-containing protein K04074 divIVA; cell division initiation protein D D3Y59_10390 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D D3Y59_10385 mreC; rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC D D3Y59_10370 rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA D D3Y59_00695 ParA family protein K03496 parA; chromosome partitioning protein D D3Y59_00635 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D D3Y59_04640 DNA gyrase/topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D D3Y59_04655 type IIA DNA topoisomerase subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D D3Y59_13555 mnmG; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D D3Y59_09365 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D D3Y59_15785 integrase K03733 xerC; integrase/recombinase XerC D D3Y59_05490 xerD; site-specific tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD D D3Y59_05215 iron-sulfur cluster carrier protein ApbC K03593 mrp; ATP-binding protein involved in chromosome partitioning D D3Y59_17830 hypothetical protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108] D D3Y59_05555 YihA family ribosome biogenesis GTP-binding protein K03978 engB; GTP-binding protein C 03400 DNA repair and recombination proteins [BR:hyh03400] D D3Y59_06565 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D D3Y59_00615 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D D3Y59_15965 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] D D3Y59_15450 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D D3Y59_15485 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D D3Y59_17200 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D D3Y59_09515 Fe-S cluster assembly protein HesB K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D D3Y59_03765 S1/P1 Nuclease K05986 NUCS; nuclease S1 [EC:3.1.30.1] D D3Y59_01795 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D D3Y59_12935 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D D3Y59_10755 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D D3Y59_03745 methylated-DNA--[protein]-cysteine S-methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D D3Y59_02620 methylated-DNA--[protein]-cysteine S-methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D D3Y59_01745 DNA-3-methyladenine glycosylase 2 family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D D3Y59_02275 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D D3Y59_03220 mutM; DNA-formamidopyrimidine glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D D3Y59_13530 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D D3Y59_09950 endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D D3Y59_13715 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D D3Y59_05050 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D D3Y59_14640 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D D3Y59_14340 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A D D3Y59_15555 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D D3Y59_02665 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D D3Y59_15895 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B D D3Y59_14870 uvrC; excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C D D3Y59_05905 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D D3Y59_09665 helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D D3Y59_16100 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D D3Y59_16105 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D D3Y59_16285 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D D3Y59_10965 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D D3Y59_10905 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D D3Y59_03305 endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2 D D3Y59_08945 mutL; DNA mismatch repair endonuclease MutL K03572 mutL; DNA mismatch repair protein MutL D D3Y59_08555 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D D3Y59_08550 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D D3Y59_17250 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D D3Y59_06430 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D D3Y59_04530 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D D3Y59_16895 DNA polymerase III subunit delta K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D D3Y59_04670 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D D3Y59_00430 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D D3Y59_17850 DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D D3Y59_09870 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D D3Y59_15445 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D D3Y59_03635 DUF3127 domain-containing protein K03111 ssb; single-strand DNA-binding protein D D3Y59_16630 recA; recombinase RecA K03553 recA; recombination protein RecA D D3Y59_10810 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA D D3Y59_16795 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D D3Y59_06915 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D D3Y59_00310 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D D3Y59_08025 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 D D3Y59_08020 sbcD; exonuclease subunit SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D D3Y59_13205 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms D D3Y59_13655 DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF D D3Y59_15435 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D D3Y59_10355 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D D3Y59_08240 recR; recombination protein RecR K06187 recR; recombination protein RecR D D3Y59_08890 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D D3Y59_03520 hypothetical protein K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] D D3Y59_03465 PD-(D/E)XK nuclease family protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D D3Y59_17855 DEAD/DEAH box helicase K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4] D D3Y59_04355 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D D3Y59_06000 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D D3Y59_05965 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D D3Y59_04685 DNA topoisomerase IB K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D D3Y59_15455 integration host factor subunit beta K03530 hupB; DNA-binding protein HU-beta D D3Y59_03335 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D D3Y59_07460 RecQ family ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D D3Y59_17020 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D D3Y59_02430 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D D3Y59_07650 Y-family DNA polymerase K03502 umuC; DNA polymerase V D D3Y59_07655 hypothetical protein K03503 umuD; DNA polymerase V [EC:3.4.21.-] D D3Y59_15075 RecX family transcriptional regulator K03565 recX; regulatory protein D D3Y59_17320 polX; DNA polymerase/3'-5' exonuclease PolX K02347 polX; DNA polymerase (family X) D D3Y59_05800 ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D D3Y59_01775 NUDIX hydrolase K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69] D D3Y59_00170 NUDIX hydrolase K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58] D D3Y59_12820 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D D3Y59_12805 ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D D3Y59_10325 bifunctional oligoribonuclease/PAP phosphatase NrnA K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] C 03029 Mitochondrial biogenesis [BR:hyh03029] D D3Y59_10700 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D D3Y59_04615 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D D3Y59_16585 elongation factor Ts K02357 tsf; elongation factor Ts D D3Y59_16060 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D D3Y59_16135 fusA; elongation factor G K02355 fusA; elongation factor G D D3Y59_15355 GTPase Era K03595 era; GTPase D D3Y59_04540 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D D3Y59_03950 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D D3Y59_10275 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D D3Y59_13585 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D D3Y59_01240 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D D3Y59_10795 gatA; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D D3Y59_04075 gatB; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D D3Y59_00160 gatC; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D D3Y59_05805 DNA/RNA non-specific endonuclease K01173 ENDOG; endonuclease G, mitochondrial D D3Y59_12685 DNA/RNA non-specific endonuclease K01173 ENDOG; endonuclease G, mitochondrial D D3Y59_11475 DNA/RNA non-specific endonuclease K01173 ENDOG; endonuclease G, mitochondrial D D3Y59_15445 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D D3Y59_03635 DUF3127 domain-containing protein K03111 ssb; single-strand DNA-binding protein D D3Y59_15210 bamA; outer membrane protein assembly factor BamA K07277 SAM50; outer membrane protein insertion porin family D D3Y59_08180 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D D3Y59_09005 nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE D D3Y59_03790 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D D3Y59_03795 co-chaperone GroES K04078 groES; chaperonin GroES D D3Y59_09000 dnaJ; molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ D D3Y59_02045 IscS subfamily cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D D3Y59_15280 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D D3Y59_07935 hscB; Fe-S protein assembly co-chaperone HscB K04082 hscB; molecular chaperone HscB D D3Y59_16750 NifU family protein K22074 NFU1; NFU1 iron-sulfur cluster scaffold homolog, mitochondrial D D3Y59_05215 iron-sulfur cluster carrier protein ApbC K03593 mrp; ATP-binding protein involved in chromosome partitioning D D3Y59_00385 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D D3Y59_00380 heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9] D D3Y59_00665 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D D3Y59_03410 SCO family protein K07152 SCO1; protein SCO1 D D3Y59_00405 SCO family protein K07152 SCO1; protein SCO1 D D3Y59_14805 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:hyh02000] D D3Y59_15680 ABC transporter ATP-binding protein K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D D3Y59_13945 ABC transporter ATP-binding protein K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump D D3Y59_13910 ABC transporter ATP-binding protein K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump D D3Y59_09105 ABC transporter ATP-binding protein K24846 pglK; ATP-binding cassette, subfamily B, bacterial PglK [EC:7.5.2.-] D D3Y59_03240 ABC transporter ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D D3Y59_12045 peptidase domain-containing ABC transporter K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D D3Y59_09250 ABC transporter ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D D3Y59_01975 ABC transporter ATP-binding protein K15738 uup; ABC transport system ATP-binding/permease protein D D3Y59_17475 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D D3Y59_06490 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D D3Y59_06495 ATP-binding cassette domain-containing protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D D3Y59_17080 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D D3Y59_00685 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D D3Y59_17075 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D D3Y59_12085 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D D3Y59_06895 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D D3Y59_17070 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D D3Y59_13610 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D D3Y59_01080 iron ABC transporter substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D D3Y59_01085 iron ABC transporter permease K02015 ABC.FEV.P; iron complex transport system permease protein D D3Y59_12465 ABC transporter ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D D3Y59_04590 YjgP/YjgQ family permease K07091 lptF; lipopolysaccharide export system permease protein D D3Y59_09385 YjgP/YjgQ family permease K11720 lptG; lipopolysaccharide export system permease protein D D3Y59_13730 lptB; LPS export ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D D3Y59_15865 ABC transporter ATP-binding protein K20459 nukF; lantibiotic transport system ATP-binding protein D D3Y59_15860 hypothetical protein K20461 nukG; lantibiotic transport system permease protein D D3Y59_06460 gldF; gliding motility-associated ABC transporter permease subunit GldF K25151 gldF; gliding motility-associated transport system permease protein D D3Y59_06465 gldA; gliding motility-associated ABC transporter ATP-binding subunit GldA K25152 gldA; gliding motility-associated transport system ATP-binding protein D D3Y59_06455 gldG; gliding motility-associated ABC transporter substrate-binding protein GldG K25153 gldG; gliding motility-associatede transport system auxiliary component D D3Y59_02100 ABC transporter permease K09808 lolC_E; lipoprotein-releasing system permease protein D D3Y59_13350 ABC transporter permease K09808 lolC_E; lipoprotein-releasing system permease protein D D3Y59_07470 ABC transporter ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D D3Y59_10455 ABC transporter permease K02195 ccmC; heme exporter protein C D D3Y59_10460 ABC transporter permease K02194 ccmB; heme exporter protein B D D3Y59_00525 FtsX-like permease family protein K09811 ftsX; cell division transport system permease protein D D3Y59_06295 ATP-binding cassette domain-containing protein K09812 ftsE; cell division transport system ATP-binding protein D D3Y59_08980 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D D3Y59_05165 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D D3Y59_10295 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D D3Y59_02345 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D D3Y59_02350 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D D3Y59_11295 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D D3Y59_11995 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D D3Y59_08985 ATP-binding cassette domain-containing protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D D3Y59_11990 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D D3Y59_02245 FtsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein D D3Y59_03880 FtsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein D D3Y59_11345 FtsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein D D3Y59_11350 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein D D3Y59_11495 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein D D3Y59_11500 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein D D3Y59_12480 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein D D3Y59_02240 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D D3Y59_11360 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D D3Y59_11485 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D D3Y59_00150 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D D3Y59_03175 bile acid:sodium symporter K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7 D D3Y59_01870 MATE family efflux transporter K26939 norM; MATE family, multidrug efflux pump D D3Y59_03320 MFS transporter K02429 fucP; MFS transporter, FHS family, L-fucose permease D D3Y59_10310 MFS transporter K11537 xapB; MFS transporter, NHS family, xanthosine permease D D3Y59_11110 MFS transporter K03761 kgtP; MFS transporter, MHS family, alpha-ketoglutarate permease D D3Y59_13000 MFS transporter K08151 tetA; MFS transporter, DHA1 family, tetracycline resistance protein D D3Y59_02660 Bcr/CflA family efflux MFS transporter K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D D3Y59_06790 MFS transporter K06902 UMF1; MFS transporter, UMF1 family D D3Y59_04895 aquaporin family protein K06188 aqpZ; aquaporin Z D D3Y59_05200 potassium channel protein K10716 kch; voltage-gated potassium channel D D3Y59_12375 transporter K08715 IRPC; inward rectifier potassium channel D D3Y59_01840 VWA domain-containing protein K07114 yfbK; Ca-activated chloride channel homolog D D3Y59_06045 VWA domain-containing protein K07114 yfbK; Ca-activated chloride channel homolog D D3Y59_02975 VWA domain-containing protein K07114 yfbK; Ca-activated chloride channel homolog D D3Y59_13165 DUF3520 domain-containing protein K07114 yfbK; Ca-activated chloride channel homolog D D3Y59_05645 VWA domain-containing protein K07114 yfbK; Ca-activated chloride channel homolog D D3Y59_10735 mscL; large conductance mechanosensitive channel protein MscL K03282 mscL; large conductance mechanosensitive channel D D3Y59_03445 mechanosensitive ion channel family protein K03442 mscS; small conductance mechanosensitive channel D D3Y59_14020 mechanosensitive ion channel family protein K16052 ynaI; MscS family membrane protein D D3Y59_14600 mgtE; magnesium transporter K06213 mgtE; magnesium transporter D D3Y59_17165 hypothetical protein K02557 motB; chemotaxis protein MotB D D3Y59_05110 cell envelope biogenesis protein OmpA K02557 motB; chemotaxis protein MotB D D3Y59_15265 MotA/TolQ/ExbB proton channel family protein K03561 exbB; biopolymer transport protein ExbB D D3Y59_04490 biopolymer transporter ExbD K03559 exbD; biopolymer transport protein ExbD D D3Y59_05695 corA; magnesium and cobalt transport protein CorA K03284 corA; magnesium transporter D D3Y59_00765 hypothetical protein K08994 yneE; ion channel-forming bestrophin family protein D D3Y59_18065 merTP; mercuric transport protein MerTP K08363 merT; mercuric ion transport protein D D3Y59_07850 copper chaperone K08364 merP; periplasmic mercuric ion binding protein D D3Y59_17220 HlyC/CorC family transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family D D3Y59_04950 OmpA family protein K03286 TC.OOP; OmpA-OmpF porin, OOP family D D3Y59_04955 OmpA family protein K03286 TC.OOP; OmpA-OmpF porin, OOP family D D3Y59_17295 OmpA family protein K03286 TC.OOP; OmpA-OmpF porin, OOP family D D3Y59_14610 long-chain fatty acid transporter permease K06076 fadL; long-chain fatty acid transport protein D D3Y59_15855 TonB-dependent receptor K19611 fepA; ferric enterobactin receptor D D3Y59_16550 TonB-dependent receptor K16091 fecA; Fe(3+) dicitrate transport protein D D3Y59_15960 TonB-dependent receptor K16092 btuB; vitamin B12 transporter D D3Y59_06665 SusC/RagA family TonB-linked outer membrane protein K21573 susC; TonB-dependent starch-binding outer membrane protein SusC D D3Y59_00250 TonB-dependent receptor K21573 susC; TonB-dependent starch-binding outer membrane protein SusC D D3Y59_15725 TonB-dependent receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins D D3Y59_07845 TonB-dependent receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins D D3Y59_06345 ferric aerobactin receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D D3Y59_14780 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D D3Y59_14790 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D D3Y59_03040 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D D3Y59_16735 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D D3Y59_07570 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D D3Y59_13325 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D D3Y59_15315 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D D3Y59_18025 TolC family protein K15725 czcC; outer membrane protein, heavy metal efflux system D D3Y59_04215 TolC family protein K12340 tolC; outer membrane protein D D3Y59_17720 TolC family protein K12340 tolC; outer membrane protein D D3Y59_10040 TolC family protein K18139 oprM; outer membrane protein, multidrug efflux system D D3Y59_11370 TolC family protein K18139 oprM; outer membrane protein, multidrug efflux system D D3Y59_08070 efflux transporter outer membrane subunit K18139 oprM; outer membrane protein, multidrug efflux system D D3Y59_07265 polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein D D3Y59_15210 bamA; outer membrane protein assembly factor BamA K07277 SAM50; outer membrane protein insertion porin family D D3Y59_08910 bamD; outer membrane protein assembly factor BamD K05807 bamD; outer membrane protein assembly factor BamD D D3Y59_07605 outer membrane protein assembly factor BamE K06186 bamE; outer membrane protein assembly factor BamE D D3Y59_12590 translocation/assembly module TamB K09800 tamB; translocation and assembly module TamB D D3Y59_09205 T9SS C-terminal target domain-containing protein K21449 ata; trimeric autotransporter adhesin D D3Y59_02025 T9SS C-terminal target domain-containing protein K21449 ata; trimeric autotransporter adhesin D D3Y59_11960 hypothetical protein K21449 ata; trimeric autotransporter adhesin D D3Y59_03615 T9SS C-terminal target domain-containing protein K21449 ata; trimeric autotransporter adhesin D D3Y59_16995 hypothetical protein K21449 ata; trimeric autotransporter adhesin D D3Y59_13695 lptC; LPS export ABC transporter periplasmic protein LptC K11719 lptC; lipopolysaccharide export system protein LptC D D3Y59_13240 MFS transporter K16211 malY; maltose/moltooligosaccharide transporter D D3Y59_14775 cation transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein D D3Y59_13055 zinc/iron permease K16267 zipB; zinc and cadmium transporter D D3Y59_17745 transporter K07238 TC.ZIP; zinc transporter, ZIP family D D3Y59_09970 CusA/CzcA family heavy metal efflux RND transporter K15726 czcA; heavy metal efflux system protein D D3Y59_17765 CusA/CzcA family heavy metal efflux RND transporter K15726 czcA; heavy metal efflux system protein D D3Y59_08570 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump D D3Y59_15010 efflux RND transporter permease subunit K18989 vexF; multidrug efflux pump D D3Y59_04235 hypothetical protein K08978 TC.BAT1; bacterial/archaeal transporter family protein D D3Y59_15090 permease K05786 rarD; chloramphenicol-sensitive protein RarD D D3Y59_06150 DMT family transporter K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D D3Y59_07585 dctA; C4-dicarboxylate transporter DctA K11103 dctA; aerobic C4-dicarboxylate transport protein D D3Y59_01760 nhaA; Na+/H+ antiporter NhaA K03313 nhaA; Na+:H+ antiporter, NhaA family D D3Y59_02265 sodium:proton antiporter K24160 NHA1; sodium/hydrogen antiporter D D3Y59_01365 hypothetical protein K03316 nhaP; Na+:H+ antiporter D D3Y59_10025 potassium transporter KefB K26735 KEA4_5_6; K+:H+ antiporter D D3Y59_03440 chloride channel protein K03281 clcA; chloride channel protein, CIC family D D3Y59_14160 chrA; chromate efflux transporter K07240 chrA; chromate transporter D D3Y59_15730 divalent metal cation transporter K03322 mntH; manganese transport protein D D3Y59_17890 arsB; arsenical-resistance protein K03325 ACR3; arsenite transporter D D3Y59_04970 potassium transporter Kup K03549 kup; KUP system potassium uptake protein D D3Y59_01320 VUT family protein K09125 yhhQ; queuosine precursor transporter D D3Y59_02870 iron transporter K22736 VIT; vacuolar iron transporter family protein D D3Y59_17740 VIT family protein K22736 VIT; vacuolar iron transporter family protein D D3Y59_08210 NAAT family transporter K05595 marC; multiple antibiotic resistance protein D D3Y59_05505 MarC family protein K05595 marC; multiple antibiotic resistance protein D D3Y59_07800 cell division protein FtsW K03588 ftsW; cell division protein FtsW D D3Y59_04065 TonB family protein K03832 tonB; periplasmic protein TonB D D3Y59_05560 energy transducer TonB K03832 tonB; periplasmic protein TonB D D3Y59_15245 energy transducer TonB K03832 tonB; periplasmic protein TonB D D3Y59_15250 energy transducer TonB K03832 tonB; periplasmic protein TonB D D3Y59_07595 energy transducer TonB K03832 tonB; periplasmic protein TonB D D3Y59_12570 energy transducer TonB K03832 tonB; periplasmic protein TonB D D3Y59_13875 hypothetical protein K03640 pal; peptidoglycan-associated lipoprotein D D3Y59_07020 hypothetical protein K03641 tolB; TolB protein D D3Y59_02015 DUF2012 domain-containing protein K03641 tolB; TolB protein D D3Y59_09035 sodium-translocating pyrophosphatase K15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1] D D3Y59_09965 efflux RND transporter periplasmic adaptor subunit K15727 czcB; membrane fusion protein, heavy metal efflux system D D3Y59_17760 efflux RND transporter periplasmic adaptor subunit K15727 czcB; membrane fusion protein, heavy metal efflux system D D3Y59_08565 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D D3Y59_17730 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D D3Y59_15005 efflux RND transporter periplasmic adaptor subunit K18990 vexE; membrane fusion protein, multidrug efflux system D D3Y59_08080 efflux RND transporter periplasmic adaptor subunit K19586 oqxA; membrane fusion protein, multidrug efflux system D D3Y59_15805 polysaccharide biosynthesis tyrosine autokinase K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3] D D3Y59_07270 polysaccharide biosynthesis tyrosine autokinase K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3] D D3Y59_06670 RagB/SusD family nutrient uptake outer membrane protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family D D3Y59_00095 RagB/SusD family nutrient uptake outer membrane protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family D D3Y59_00105 RagB/SusD family nutrient uptake outer membrane protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family D D3Y59_00120 RagB/SusD family nutrient uptake outer membrane protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family D D3Y59_00255 RagB/SusD family nutrient uptake outer membrane protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family D D3Y59_00910 RagB/SusD family nutrient uptake outer membrane protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family D D3Y59_16710 nicotinamide riboside transporter PnuC K03811 pnuC; nicotinamide mononucleotide transporter D D3Y59_15110 ferrous iron transport protein A K04758 feoA; ferrous iron transport protein A D D3Y59_15115 feoB; ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B D D3Y59_10440 cytochrome C biogenesis protein K02198 ccmF; cytochrome c-type biogenesis protein CcmF C 02044 Secretion system [BR:hyh02044] D D3Y59_04215 TolC family protein K12340 tolC; outer membrane protein D D3Y59_17720 TolC family protein K12340 tolC; outer membrane protein D D3Y59_07910 ComEC family competence protein K02238 comEC; competence protein ComEC D D3Y59_02010 hypothetical protein K04335 csgB; minor curlin subunit D D3Y59_02005 hypothetical protein K04335 csgB; minor curlin subunit D D3Y59_01995 curli production assembly/transport component CsgF K04338 csgF; curli production assembly/transport component CsgF D D3Y59_02000 curli production assembly/transport component CsgG K06214 csgG; curli production assembly/transport component CsgG D D3Y59_16380 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D D3Y59_16745 protein translocase subunit SecDF K12257 secDF; SecD/SecF fusion protein D D3Y59_16070 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D D3Y59_03800 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D D3Y59_16250 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D D3Y59_06180 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D D3Y59_12200 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D D3Y59_13975 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D D3Y59_00665 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D D3Y59_10785 twin-arginine translocase TatA/TatE family subunit K03116 tatA; sec-independent protein translocase protein TatA D D3Y59_10790 twin-arginine translocase TatA/TatE family subunit K03116 tatA; sec-independent protein translocase protein TatA D D3Y59_13375 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC C 02042 Bacterial toxins [BR:hyh02042] D D3Y59_17220 HlyC/CorC family transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family C 02022 Two-component system [BR:hyh02022] D D3Y59_16615 two-component sensor histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D D3Y59_16620 DNA-binding response regulator K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D D3Y59_08535 sensor histidine kinase K02480 K02480; two-component system, NarL family, sensor kinase [EC:2.7.13.3] D D3Y59_01490 hypothetical protein K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3] D D3Y59_01525 histidine kinase K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3] D D3Y59_07100 sensor histidine kinase K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3] D D3Y59_07860 DNA-binding response regulator K02477 K02477; two-component system, LytTR family, response regulator D D3Y59_07095 DNA-binding response regulator K02477 K02477; two-component system, LytTR family, response regulator D D3Y59_07625 DNA-binding response regulator K02477 K02477; two-component system, LytTR family, response regulator D D3Y59_09845 DNA-binding response regulator K02477 K02477; two-component system, LytTR family, response regulator D D3Y59_10880 DNA-binding response regulator K02477 K02477; two-component system, LytTR family, response regulator D D3Y59_01495 DNA-binding response regulator K02477 K02477; two-component system, LytTR family, response regulator D D3Y59_02230 sigma-54-dependent Fis family transcriptional regulator K07713 zraR; two-component system, NtrC family, response regulator HydG D D3Y59_17140 hypothetical protein K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D D3Y59_05940 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D D3Y59_05950 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D D3Y59_05945 hypothetical protein K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D D3Y59_16500 chemotaxis protein CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D D3Y59_16505 hypothetical protein K13924 cheBR; two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61] D D3Y59_01270 GAF domain-containing protein K11354 cph1; two-component system, chemotaxis family, sensor kinase Cph1 [EC:2.7.13.3] D D3Y59_02905 response regulator K11443 divK; two-component system, cell cycle response regulator DivK C 02035 Bacterial motility proteins [BR:hyh02035] D D3Y59_05940 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D D3Y59_05955 purine-binding chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D D3Y59_05935 hypothetical protein K03410 cheC; chemotaxis protein CheC D D3Y59_05945 hypothetical protein K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D D3Y59_16500 chemotaxis protein CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D D3Y59_16505 hypothetical protein K13924 cheBR; two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61] D D3Y59_05950 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D D3Y59_17165 hypothetical protein K02557 motB; chemotaxis protein MotB D D3Y59_05110 cell envelope biogenesis protein OmpA K02557 motB; chemotaxis protein MotB C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:hyh04812] D D3Y59_10390 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D D3Y59_07775 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D D3Y59_07780 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA D D3Y59_00695 ParA family protein K03496 parA; chromosome partitioning protein D D3Y59_00635 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:hyh04147] D D3Y59_14805 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG D D3Y59_16295 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D D3Y59_03255 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D D3Y59_07430 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D D3Y59_09340 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D D3Y59_11045 membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D D3Y59_05590 peroxiredoxin K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24] D D3Y59_03790 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D D3Y59_08180 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D D3Y59_08250 S9 family peptidase K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5] D D3Y59_14220 S9 family peptidase K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5] D D3Y59_16685 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D D3Y59_16060 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D D3Y59_03175 bile acid:sodium symporter K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7 D D3Y59_15390 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D D3Y59_03060 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D D3Y59_06055 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D D3Y59_03365 peptidase K01283 ACE; peptidyl-dipeptidase A [EC:3.4.15.1] D D3Y59_15980 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D D3Y59_09025 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D D3Y59_05240 fahA; fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2] D D3Y59_05570 class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D D3Y59_04330 fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D D3Y59_12635 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D D3Y59_01345 DUF3459 domain-containing protein K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D D3Y59_00805 1,4-alpha-glucan-branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D D3Y59_03905 glutamine synthetase type III K01915 glnA; glutamine synthetase [EC:6.3.1.2] D D3Y59_12245 porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D D3Y59_01950 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D D3Y59_13405 4a-hydroxytetrahydrobiopterin dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D D3Y59_05835 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D D3Y59_00710 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D D3Y59_10395 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D D3Y59_11685 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D3Y59_08060 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D D3Y59_06510 electron transfer flavoprotein subunit alpha/FixB family protein K03522 fixB; electron transfer flavoprotein alpha subunit D D3Y59_14095 Glu/Leu/Phe/Val dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D D3Y59_15570 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D D3Y59_02990 hypothetical protein K03098 APOD; apolipoprotein D and lipocalin family protein C 02048 Prokaryotic defense system [BR:hyh02048] D D3Y59_12730 type I restriction endonuclease subunit R K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] D D3Y59_12725 restriction endonuclease subunit S K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] D D3Y59_12720 SAM-dependent DNA methyltransferase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] D D3Y59_14470 AAA family ATPase K07452 mcrB; 5-methylcytosine-specific restriction enzyme B [EC:3.1.21.-] D D3Y59_14465 hypothetical protein K19147 mcrC; 5-methylcytosine-specific restriction enzyme subunit McrC D D3Y59_05855 XRE family transcriptional regulator K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D D3Y59_07775 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D D3Y59_10390 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D D3Y59_04640 DNA gyrase/topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D D3Y59_04655 type IIA DNA topoisomerase subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D D3Y59_13760 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D D3Y59_02045 IscS subfamily cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D D3Y59_15280 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides [BR:hyh04052] D D3Y59_08455 acyl-CoA-binding protein K08762 DBI; diazepam-binding inhibitor (GABA receptor modulator, acyl-CoA-binding protein) C 04515 Cell adhesion molecules C 04090 CD molecules [BR:hyh04090] D D3Y59_08250 S9 family peptidase K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5] D D3Y59_14220 S9 family peptidase K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5] D D3Y59_03365 peptidase K01283 ACE; peptidyl-dipeptidase A [EC:3.4.15.1] C 01504 Antimicrobial resistance genes [BR:hyh01504] D D3Y59_13000 MFS transporter K08151 tetA; MFS transporter, DHA1 family, tetracycline resistance protein D D3Y59_17560 antibiotic acetyltransferase K18234 vat; virginiamycin A acetyltransferase [EC:2.3.1.-] D D3Y59_01510 chloramphenicol acetyltransferase K19271 catA; chloramphenicol O-acetyltransferase type A [EC:2.3.1.28] D D3Y59_17525 hypothetical protein K02172 blaR1; bla regulator protein blaR1 D D3Y59_14505 TonB family protein K02172 blaR1; bla regulator protein blaR1 D D3Y59_17520 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D D3Y59_14510 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D D3Y59_00870 D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D D3Y59_08565 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D D3Y59_17730 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D D3Y59_08570 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump D D3Y59_10040 TolC family protein K18139 oprM; outer membrane protein, multidrug efflux system D D3Y59_11370 TolC family protein K18139 oprM; outer membrane protein, multidrug efflux system D D3Y59_08070 efflux transporter outer membrane subunit K18139 oprM; outer membrane protein, multidrug efflux system D D3Y59_04215 TolC family protein K12340 tolC; outer membrane protein D D3Y59_17720 TolC family protein K12340 tolC; outer membrane protein C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins [BR:hyh00536] C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:hyh00537] D D3Y59_11045 membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:hyh03100] D D3Y59_01150 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D D3Y59_09185 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D D3Y59_10510 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D D3Y59_11280 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D D3Y59_07490 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D D3Y59_17145 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D D3Y59_06030 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D D3Y59_11940 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D D3Y59_03715 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D D3Y59_03720 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D D3Y59_00575 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D D3Y59_09430 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D D3Y59_03250 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D D3Y59_06165 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D D3Y59_16050 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D D3Y59_15915 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D D3Y59_10895 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D D3Y59_10900 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D D3Y59_10590 tRNA-His K14226 tRNA-His; tRNA His D D3Y59_01145 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D D3Y59_10515 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D D3Y59_01115 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D D3Y59_02885 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D D3Y59_07940 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D D3Y59_08320 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D D3Y59_10890 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D D3Y59_00270 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D D3Y59_02220 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D D3Y59_04600 tRNA-Met K14230 tRNA-Met; tRNA Met D D3Y59_07405 tRNA-Met K14230 tRNA-Met; tRNA Met D D3Y59_12755 tRNA-Met K14230 tRNA-Met; tRNA Met D D3Y59_13855 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D D3Y59_06035 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D D3Y59_13925 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D D3Y59_13930 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D D3Y59_08640 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D D3Y59_06040 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D D3Y59_06840 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D D3Y59_08645 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D D3Y59_04305 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D D3Y59_15040 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D D3Y59_16055 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D D3Y59_16065 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D D3Y59_16045 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D D3Y59_11535 tRNA-Val K14237 tRNA-Val; tRNA Val D D3Y59_14005 tRNA-Val K14237 tRNA-Val; tRNA Val D D3Y59_10520 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D D3Y59_12615 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D D3Y59_01140 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D D3Y59_04280 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D D3Y59_10505 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D D3Y59_12610 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D D3Y59_01155 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D D3Y59_04285 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D D3Y59_10500 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D D3Y59_12605 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D D3Y59_04290 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D D3Y59_01160 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D D3Y59_06310 ffs; signal recognition particle sRNA small type K01983 ffs; SRP RNA D D3Y59_06710 rnpB; RNase P RNA component class A K01978 rnpB; M1 RNA D D3Y59_09860 ssrA; transfer-messenger RNA K15035 ssrA; transfer-messenger RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D D3Y59_00090 SDR family NAD(P)-dependent oxidoreductase K16216 yueD; benzil reductase ((S)-benzoin forming) [EC:1.1.1.320] D D3Y59_15745 T9SS C-terminal target domain-containing protein K21430 yliI; aldose sugar dehydrogenase [EC:1.1.5.-] D D3Y59_02210 SDR family oxidoreductase K11166 DHRS7B; dehydrogenase/reductase SDR family member 7B [EC:1.1.-.-] D D3Y59_03915 NAD(P)H-quinone oxidoreductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D D3Y59_09980 NADP-dependent oxidoreductase K00359 qorA; NADPH:quinone reductase [EC:1.6.5.5] D D3Y59_14625 ypdA; YpdA family putative bacillithiol disulfide reductase K26960 bdr; bacillithiol disulfide reductase [EC:1.8.1.-] D D3Y59_11125 msrA; peptide-methionine (S)-S-oxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D D3Y59_04780 msrA; peptide-methionine (S)-S-oxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D D3Y59_14955 msrB; peptide-methionine (R)-S-oxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] D D3Y59_02655 msrB; peptide-methionine (R)-S-oxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] D D3Y59_00275 msrB; peptide-methionine (R)-S-oxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] D D3Y59_09465 msrB; peptide-methionine (R)-S-oxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] D D3Y59_03695 cytochrome-c peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5] D D3Y59_07765 cytochrome-c peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5] D D3Y59_07770 cytochrome-c peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5] D D3Y59_08500 manganese catalase family protein K07217 ydbD; manganese catalase [EC:1.11.1.6] D D3Y59_00560 alpha/beta hydrolase K00433 cpo; non-heme chloroperoxidase [EC:1.11.1.10] D D3Y59_05740 peroxiredoxin K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D D3Y59_02985 thioredoxin-dependent thiol peroxidase K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D D3Y59_02845 OsmC family peroxiredoxin K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28] D D3Y59_00015 OsmC family peroxiredoxin K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28] D D3Y59_09985 organic hydroperoxide resistance protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28] D D3Y59_07485 Ohr family peroxiredoxin K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28] D D3Y59_03360 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D D3Y59_13490 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D D3Y59_12980 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D D3Y59_12075 fatty acid hydroxylase K19703 FA2H; 4-hydroxysphinganine ceramide fatty acyl 2-hydroxylase [EC:1.14.18.6] D D3Y59_17885 arsenate reductase ArsC K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4] D D3Y59_04105 protein-L-isoaspartate(D-aspartate) O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D D3Y59_11740 carbamoyltransferase K00612 nodU; carbamoyltransferase [EC:2.1.3.-] D D3Y59_15925 GNAT family N-acetyltransferase K22441 paiA; diamine N-acetyltransferase [EC:2.3.1.57] D D3Y59_08445 GNAT family N-acetyltransferase K22441 paiA; diamine N-acetyltransferase [EC:2.3.1.57] D D3Y59_13415 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269] D D3Y59_07205 N-acetyltransferase K03824 yhbS; putative acetyltransferase [EC:2.3.1.-] D D3Y59_13550 GNAT family N-acetyltransferase K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29] D D3Y59_00775 glycosyl hydrolase K18820 agd31B; oligosaccharide 4-alpha-D-glucosyltransferase [EC:2.4.1.161] D D3Y59_08955 bshA; N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA K00754 bshA; L-malate glycosyltransferase [EC:2.4.1.-] D D3Y59_09095 glycosyltransferase family 1 protein K00754 bshA; L-malate glycosyltransferase [EC:2.4.1.-] D D3Y59_01630 deoxyhypusine synthase K00809 DHPS; deoxyhypusine synthase [EC:2.5.1.46] D D3Y59_09310 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D D3Y59_12105 TIGR00159 family protein K18672 dacA; diadenylate cyclase [EC:2.7.7.85] D D3Y59_02635 YdiU family protein K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108] D D3Y59_01390 hypothetical protein K22579 rph; rifampicin phosphotransferase [EC:2.7.9.6] D D3Y59_09690 O-acetyl-ADP-ribose deacetylase K23518 MACROD; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106] D D3Y59_00540 hypothetical protein K18700 flK; fluoroacetyl-CoA thioesterase [EC:3.1.2.29] D D3Y59_06140 thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D D3Y59_08655 acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D D3Y59_11515 acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D D3Y59_03530 acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D D3Y59_12155 thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D D3Y59_15810 capsular biosynthesis protein K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48] D D3Y59_11230 histidine phosphatase family protein K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-] D D3Y59_06850 TatD family deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D D3Y59_15125 alpha/beta fold hydrolase K01175 ybfF; esterase [EC:3.1.-.-] D D3Y59_13260 alpha-amylase K21575 susA; neopullulanase [EC:3.2.1.135] D D3Y59_00750 D-aminoacylase K06015 E3.5.1.81; N-acyl-D-amino-acid deacylase [EC:3.5.1.81] D D3Y59_03990 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D D3Y59_12365 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D D3Y59_06865 polysaccharide deacetylase family protein K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104] D D3Y59_04560 bshB1; bacillithiol biosynthesis deacetylase BshB1 K01463 bshB1; N-acetylglucosamine malate deacetylase 1 [EC:3.5.1.-] D D3Y59_14350 RidA family protein K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] D D3Y59_12225 RidA family protein K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] D D3Y59_13770 RidA family protein K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] D D3Y59_14420 MoxR family ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D D3Y59_10865 MoxR family ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D D3Y59_16655 MoxR family ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D D3Y59_00450 MoxR family ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D D3Y59_09810 uvsE; UV DNA damage repair endonuclease UvsE K13281 uvsE; UV DNA damage endonuclease [EC:3.-.-.-] D D3Y59_06965 radical SAM protein K03716 splB; spore photoproduct lyase [EC:4.1.99.14] D D3Y59_14950 NAD(P)H-hydrate dehydratase K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6] D D3Y59_04880 methylmalonyl-CoA mutase K11942 icmF; isobutyryl-CoA mutase [EC:5.4.99.13] D D3Y59_01415 hypothetical protein K22319 oleC; olefin beta-lactone synthetase [EC:6.1.3.1] D D3Y59_00585 cphA; cyanophycin synthetase K03802 cphA; cyanophycin synthetase [EC:6.3.2.29 6.3.2.30] D D3Y59_03020 peptidoglycan synthetase K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45] C 99981 Carbohydrate metabolism D D3Y59_05070 (Fe-S)-binding protein K18928 lldE; L-lactate dehydrogenase complex protein LldE D D3Y59_14975 iron-sulfur cluster-binding protein K18929 lldF; L-lactate dehydrogenase complex protein LldF D D3Y59_16990 hypothetical protein K00782 lldG; L-lactate dehydrogenase complex protein LldG D D3Y59_12185 bshC; bacillithiol biosynthesis cysteine-adding enzyme BshC K22136 bshC; bacillithiol synthase C 99982 Energy metabolism D D3Y59_01035 alcohol dehydrogenase K13955 yogA; zinc-binding alcohol dehydrogenase/oxidoreductase D D3Y59_03140 fdhD; formate dehydrogenase accessory sulfurtransferase FdhD K02379 fdhD; FdhD protein D D3Y59_10430 ferredoxin K04755 fdx; ferredoxin, 2Fe-2S D D3Y59_17120 (2Fe-2S)-binding protein K04755 fdx; ferredoxin, 2Fe-2S D D3Y59_02040 iscU; Fe-S cluster assembly scaffold IscU K04488 iscU; nitrogen fixation protein NifU and related proteins D D3Y59_06515 electron transfer flavoprotein beta subunit/FixA family protein K03521 fixA; electron transfer flavoprotein beta subunit D D3Y59_13150 dodecin domain-containing protein K09165 K09165; dodecin C 99983 Lipid metabolism C 99984 Nucleotide metabolism C 99985 Amino acid metabolism D D3Y59_01835 YggS family pyridoxal phosphate-dependent enzyme K06997 yggS; PLP dependent protein D D3Y59_13455 N-acetyltransferase K22479 argA; N-acetyltransferase C 99986 Glycan metabolism D D3Y59_10625 UPF0104 family protein K07027 K07027; glycosyltransferase 2 family protein D D3Y59_13810 UPF0104 family protein K07027 K07027; glycosyltransferase 2 family protein C 99987 Cofactor metabolism D D3Y59_01920 AarF/ABC1/UbiB kinase family protein K03688 ubiB; ubiquinone biosynthesis protein C 99988 Secondary metabolism D D3Y59_07755 NADPH-dependent oxidoreductase K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone) C 99999 Others D D3Y59_05150 DoxX family protein K15977 K15977; putative oxidoreductase D D3Y59_17010 BrxA/BrxB family bacilliredoxin K26958 brxA_B; bacilliredoxin D D3Y59_11880 ytxJ; bacillithiol system redox-active protein YtxJ K26959 brxC; monothiol bacilliredoxin B B 09192 Unclassified: genetic information processing C 99973 Transcription D D3Y59_10415 cold shock domain-containing protein K03704 cspA; cold shock protein D D3Y59_07050 cold shock domain-containing protein K03704 cspA; cold shock protein D D3Y59_03540 cold shock domain-containing protein K03704 cspA; cold shock protein C 99974 Translation C 99975 Protein processing D D3Y59_08245 ATP-dependent Clp protease adaptor ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS D D3Y59_01110 tig; trigger factor K03545 tig; trigger factor D D3Y59_00545 smpB; SsrA-binding protein SmpB K03664 smpB; SsrA-binding protein D D3Y59_15665 ATP-binding protein K07391 comM; magnesium chelatase family protein D D3Y59_17350 DsbA family protein K07396 K07396; putative protein-disulfide isomerase D D3Y59_17330 OsmC family peroxiredoxin K07397 yhfA; putative redox protein D D3Y59_11875 OsmC family peroxiredoxin K07397 yhfA; putative redox protein D D3Y59_03085 XdhC/CoxI family protein K07402 xdhC; xanthine dehydrogenase accessory factor C 99976 Replication and repair D D3Y59_08520 MGMT family protein K07443 ybaZ; methylated-DNA-protein-cysteine methyltransferase related protein D D3Y59_09790 JAB domain-containing protein K03630 radC; DNA repair protein RadC D D3Y59_14815 YraN family protein K07460 yraN; putative endonuclease D D3Y59_06700 GIY-YIG nuclease family protein K07461 K07461; putative endonuclease D D3Y59_12335 GIY-YIG nuclease family protein K07461 K07461; putative endonuclease D D3Y59_00065 GIY-YIG nuclease family protein K07461 K07461; putative endonuclease D D3Y59_04045 dprA; DNA-protecting protein DprA K04096 smf; DNA processing protein D D3Y59_08115 replication-associated recombination protein A K07478 ycaJ; putative ATPase D D3Y59_10255 3'-5' exonuclease K07501 K07501; 3'-5' exonuclease D D3Y59_04890 transposase K07491 rayT; REP-associated tyrosine transposase D D3Y59_01595 hypothetical protein K07491 rayT; REP-associated tyrosine transposase D D3Y59_01705 hypothetical protein K07491 rayT; REP-associated tyrosine transposase D D3Y59_11750 transposase K07491 rayT; REP-associated tyrosine transposase C 99979 Viral proteins C 99998 Others D D3Y59_02780 PspA/IM30 family protein K03969 pspA; phage shock protein A D D3Y59_05055 rhodanese-like domain-containing protein K03972 pspE; phage shock protein E D D3Y59_04025 restriction endonuclease K07504 K07504; predicted type IV restriction endonuclease D D3Y59_06105 YbaB/EbfC family nucleoid-associated protein K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D D3Y59_06255 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D D3Y59_10540 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D D3Y59_05710 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D D3Y59_08005 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D D3Y59_04910 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D D3Y59_14055 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D D3Y59_03785 MFS transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family D D3Y59_13580 anion permease K03306 TC.PIT; inorganic phosphate transporter, PiT family D D3Y59_02540 sodium transporter K03307 TC.SSS; solute:Na+ symporter, SSS family C 99978 Cell growth D D3Y59_12815 T9SS C-terminal target domain-containing protein K06330 cotH; spore coat protein H D D3Y59_02380 biotin-dependent carboxyltransferase family protein K06350 kipA; antagonist of KipI D D3Y59_02375 pxpB; 5-oxoprolinase subunit PxpB K06351 kipI; inhibitor of KinA D D3Y59_06220 hypothetical protein K07257 spsF; spore coat polysaccharide biosynthesis protein SpsF D D3Y59_10775 peptidase M23 K22719 envC; murein hydrolase activator C 99993 Cell motility C 99995 Signaling proteins D D3Y59_09470 typA; translational GTPase TypA K06207 typA; GTP-binding protein D D3Y59_07920 phoH; phosphate starvation-inducible protein PhoH K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins D D3Y59_10935 YajQ family cyclic di-GMP-binding protein K09767 yajQ; cyclic-di-GMP-binding protein C 99992 Structural proteins D D3Y59_05475 outer membrane lipoprotein carrier protein LolA K03634 lolA; outer membrane lipoprotein carrier protein D D3Y59_15215 OmpH family outer membrane protein K06142 hlpA; outer membrane protein D D3Y59_15220 OmpH family outer membrane protein K06142 hlpA; outer membrane protein D D3Y59_09655 OmpH family outer membrane protein K06142 hlpA; outer membrane protein D D3Y59_13030 glycoside hydrolase family 25 protein K07273 acm; lysozyme D D3Y59_02235 efflux RND transporter periplasmic adaptor subunit K02005 ABC.CD.TX; HlyD family secretion protein D D3Y59_04220 efflux RND transporter periplasmic adaptor subunit K02005 ABC.CD.TX; HlyD family secretion protein D D3Y59_11375 efflux RND transporter periplasmic adaptor subunit K02005 ABC.CD.TX; HlyD family secretion protein D D3Y59_11505 efflux RND transporter periplasmic adaptor subunit K02005 ABC.CD.TX; HlyD family secretion protein D D3Y59_10445 cytochrome c maturation protein CcmE K02197 ccmE; cytochrome c-type biogenesis protein CcmE D D3Y59_06675 SusF/SusE family outer membrane protein K21571 susE_F; starch-binding outer membrane protein SusE/F C 99994 Others D D3Y59_01205 TerC family protein K05794 terC; tellurite resistance protein TerC D D3Y59_00610 apaG; Co2+/Mg2+ efflux protein ApaG K06195 apaG; ApaG protein D D3Y59_11570 FAD-dependent oxidoreductase K07222 K07222; putative flavoprotein involved in K+ transport B B 09194 Poorly characterized C 99996 General function prediction only D D3Y59_15165 CvpA family protein K03558 cvpA; membrane protein required for colicin V production D D3Y59_02295 GNAT family N-acetyltransferase K02348 elaA; ElaA protein D D3Y59_01860 tRNA-binding protein K06878 K06878; tRNA-binding protein D D3Y59_02475 hypothetical protein K06886 glbN; hemoglobin D D3Y59_13120 group 1 truncated hemoglobin K06886 glbN; hemoglobin D D3Y59_11770 group III truncated hemoglobin K06886 glbN; hemoglobin D D3Y59_11775 group III truncated hemoglobin K06886 glbN; hemoglobin D D3Y59_03735 hypothetical protein K07001 K07001; NTE family protein D D3Y59_12390 patatin K07001 K07001; NTE family protein D D3Y59_10160 noncanonical pyrimidine nucleotidase, YjjG family K07025 K07025; putative hydrolase of the HAD superfamily D D3Y59_01515 HAD family hydrolase K07025 K07025; putative hydrolase of the HAD superfamily D D3Y59_10960 metal-dependent hydrolase K07038 K07038; inner membrane protein D D3Y59_08650 YihY/virulence factor BrkB family protein K07058 K07058; membrane protein D D3Y59_03390 hypothetical protein K07058 K07058; membrane protein D D3Y59_12130 YihY/virulence factor BrkB family protein K07058 K07058; membrane protein D D3Y59_05455 rhodanese-related sulfurtransferase K07146 K07146; UPF0176 protein D D3Y59_14665 LemA family protein K03744 lemA; LemA protein D D3Y59_15845 DedA family protein K03975 dedA; membrane-associated protein D D3Y59_18035 DUF202 domain-containing protein K00389 yidH; putative membrane protein D D3Y59_05925 phage holin family protein K08972 K08972; putative membrane protein D D3Y59_00410 DUF420 domain-containing protein K08976 K08976; putative membrane protein D D3Y59_16905 DUF2238 domain-containing protein K08984 yjdF; putative membrane protein D D3Y59_14355 DUF4142 domain-containing protein K08995 K08995; putative membrane protein D D3Y59_14365 DUF4142 domain-containing protein K08995 K08995; putative membrane protein D D3Y59_09355 DUF4142 domain-containing protein K08995 K08995; putative membrane protein D D3Y59_01235 lipo-like protein K09914 K09914; putative lipoprotein D D3Y59_11630 alkylphosphonate utilization protein K06193 phnA; protein PhnA C 99997 Function unknown D D3Y59_03170 ankyrin repeat domain-containing protein K06867 K06867; uncharacterized protein D D3Y59_17585 ankyrin repeat domain-containing protein K06867 K06867; uncharacterized protein D D3Y59_08820 ankyrin repeat domain-containing protein K06867 K06867; uncharacterized protein D D3Y59_14655 TPM domain-containing protein K06872 K06872; uncharacterized protein D D3Y59_12860 TPM domain-containing protein K06872 K06872; uncharacterized protein D D3Y59_16485 hypothetical protein K06884 K06884; uncharacterized protein D D3Y59_05365 HD domain-containing protein K06885 K06885; uncharacterized protein D D3Y59_00315 thioredoxin domain-containing protein K06888 K06888; uncharacterized protein D D3Y59_05820 alpha/beta fold hydrolase K06889 K06889; uncharacterized protein D D3Y59_15545 alpha/beta hydrolase K06889 K06889; uncharacterized protein D D3Y59_15930 hypothetical protein K06889 K06889; uncharacterized protein D D3Y59_03105 alpha/beta fold hydrolase K06889 K06889; uncharacterized protein D D3Y59_08175 alpha/beta hydrolase K06889 K06889; uncharacterized protein D D3Y59_03375 alpha/beta hydrolase K06889 K06889; uncharacterized protein D D3Y59_07715 alpha/beta fold hydrolase K06889 K06889; uncharacterized protein D D3Y59_08350 hypothetical protein K06890 K06890; uncharacterized protein D D3Y59_04180 CoA-binding protein K06929 K06929; uncharacterized protein D D3Y59_16450 DNA-binding protein K06934 K06934; uncharacterized protein D D3Y59_04345 HD domain-containing protein K06950 K06950; uncharacterized protein D D3Y59_13820 zinc metallopeptidase K06973 K06973; uncharacterized protein D D3Y59_07510 N-acetyltransferase K06975 K06975; uncharacterized protein D D3Y59_09660 succinylglutamate desuccinylase K06987 K06987; uncharacterized protein D D3Y59_01380 hypothetical protein K07003 K07003; uncharacterized protein D D3Y59_04010 hypothetical protein K07003 K07003; uncharacterized protein D D3Y59_13595 hypothetical protein K07003 K07003; uncharacterized protein D D3Y59_09360 alpha/beta fold hydrolase K07019 K07019; uncharacterized protein D D3Y59_11655 glyoxalase/bleomycin resistance/extradiol dioxygenase family protein K07032 K07032; uncharacterized protein D D3Y59_11670 glyoxalase/bleomycin resistance/extradiol dioxygenase family protein K07032 K07032; uncharacterized protein D D3Y59_17400 TIGR01777 family protein K07071 K07071; uncharacterized protein D D3Y59_01565 sodium-dependent bicarbonate transport family permease K07086 K07086; uncharacterized protein D D3Y59_15300 ABC transporter permease K07090 K07090; uncharacterized protein D D3Y59_03195 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein D D3Y59_17700 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein D D3Y59_01770 metallophosphoesterase K07095 K07095; uncharacterized protein D D3Y59_09795 metallophosphoesterase K07098 K07098; uncharacterized protein D D3Y59_17685 YeeE/YedE family protein K07112 K07112; uncharacterized protein D D3Y59_02850 SDR family oxidoreductase K07124 K07124; uncharacterized protein D D3Y59_06060 toxin-antitoxin system YwqK family antitoxin K07126 K07126; uncharacterized protein D D3Y59_04185 FAD-binding protein K07137 K07137; uncharacterized protein D D3Y59_08415 MOSC domain-containing protein K07140 K07140; MOSC domain-containing protein D D3Y59_03835 hypothetical protein K07164 K07164; uncharacterized protein D D3Y59_09295 yidD; membrane protein insertion efficiency factor YidD K08998 K08998; uncharacterized protein D D3Y59_06505 hypothetical protein K08999 K08999; uncharacterized protein D D3Y59_15160 GatB/YqeY domain-containing protein K09117 K09117; uncharacterized protein D D3Y59_09525 DUF167 domain-containing protein K09131 K09131; uncharacterized protein D D3Y59_14650 DUF1684 domain-containing protein K09164 K09164; uncharacterized protein D D3Y59_09785 DUF1684 domain-containing protein K09164 K09164; uncharacterized protein D D3Y59_00675 YqcI/YcgG family protein K09190 K09190; uncharacterized protein D D3Y59_11705 sulfite exporter TauE/SafE family protein K09792 K09792; uncharacterized protein D D3Y59_09635 GntR family transcriptional regulator K00243 K00243; uncharacterized protein D D3Y59_09605 DUF416 family protein K09891 K09891; uncharacterized protein D D3Y59_12380 hypothetical protein K09922 K09922; uncharacterized protein D D3Y59_00935 DUF2059 domain-containing protein K09924 K09924; uncharacterized protein D D3Y59_11665 DUF692 family protein K09930 K09930; uncharacterized protein D D3Y59_05750 glycosyltransferase K09931 K09931; uncharacterized protein D D3Y59_08865 ACT domain-containing protein K09964 K09964; uncharacterized protein D D3Y59_00680 urea carboxylase-associated family protein K09967 K09967; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 28, 2024