+E Transcription factors KO
#
Transcription Factors - Leclercia sp. LSNIH3
%
!
AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D C3F35_26010 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D C3F35_20165 DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D C3F35_23575 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
#
AProkaryotic type
B Helix-turn-helix
C AraC family
D C3F35_08165 arabinose operon transcriptional regulator AraC K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D C3F35_08715 hpaA; 4-hydroxyphenylacetate catabolism regulatory protein HpaA K02508 hpaA; AraC family transcriptional regulator, 4-hydroxyphenylacetate 3-monooxygenase operon regulatory protein
D C3F35_12220 HTH-type transcriptional activator RhaR K02854 rhaR; AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR
D C3F35_12215 HTH-type transcriptional activator RhaS K02855 rhaS; AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS
D C3F35_02145 transcriptional regulator ChbR K03490 chbR; AraC family transcriptional regulator, dual regulator of chb operon
D C3F35_10275 DNA-binding transcriptional regulator SoxS K13631 soxS; AraC family transcriptional regulator, mar-sox-rob regulon activator
D C3F35_00730 MDR efflux pump AcrAB transcriptional activator MarA K13632 marA; AraC family transcriptional regulator, mar-sox-rob regulon activator
D C3F35_08445 MDR efflux pump AcrAB transcriptional activator RobA K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D C3F35_06075 ramA; RamA family antibiotic efflux transcriptional regulator K18325 ramA; AraC family of transcriptional regulator, multidrug resistance transcriptional activator
D C3F35_03245 DNA-binding transcriptional regulator RamA K18325 ramA; AraC family of transcriptional regulator, multidrug resistance transcriptional activator
D C3F35_22280 transcriptional regulator FeaR K14063 feaR; AraC family transcriptional regulator, positive regulator of tynA and feaB
D C3F35_02360 AraC family transcriptional regulator K25495 nimR; AraC family transcriptional regulator, regulator of nimT
D C3F35_24015 AraC family transcriptional regulator K25495 nimR; AraC family transcriptional regulator, regulator of nimT
D C3F35_22895 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D C3F35_19170 bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D C3F35_21355 transcriptional regulator FtrA K13633 ftrA; AraC family transcriptional regulator, transcriptional activator FtrA
C LysR family
D C3F35_22645 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D C3F35_22800 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D C3F35_16325 transcriptional regulator GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D C3F35_00220 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D C3F35_17010 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D C3F35_12585 HTH-type transcriptional activator IlvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D C3F35_12830 HTH-type transcriptional regulator MetR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D C3F35_08335 transcriptional activator NhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D C3F35_12465 DNA-binding transcriptional regulator OxyR K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D C3F35_15855 transcriptional regulator ArgP K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D C3F35_08095 transcriptional regulator LeuO K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon
D C3F35_14880 transcriptional regulator TdcA K07592 tdcA; LysR family transcriptional regulator, tdc operon transcriptional activator
D C3F35_21810 HTH-type transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D C3F35_20115 cbl; transcriptional regulator Cbl K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator
D C3F35_13790 LysR family transcriptional regulator K13928 mdcR; LysR family transcriptional regulator, malonate utilization transcriptional regulator
D C3F35_01325 LysR family transcriptional regulator K14057 abgR; LysR family transcriptional regulator, regulator of abg operon
D C3F35_00090 LysR family transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D C3F35_20110 nitrogen assimilation transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D C3F35_14310 transcriptional regulator K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon
D C3F35_12540 HTH-type transcriptional regulator HdfR K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
C DeoR family
D C3F35_04420 DNA-binding transcriptional repressor DeoR K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor
D C3F35_11430 DeoR family transcriptional regulator K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor
D C3F35_13475 DeoR/GlpR family transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D C3F35_14815 DeoR/GlpR transcriptional regulator K02436 gatR; DeoR family transcriptional regulator, galactitol utilization operon repressor
D C3F35_15540 transcriptional regulator K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator
D C3F35_09670 HTH-type transcriptional regulator UlaR K03477 ulaR; DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor
D C3F35_12020 DeoR/GlpR transcriptional regulator K27243 csqR; DeoR family transcriptional regulator, sulfoquinovose operon repressor
C LacI family
D C3F35_24555 lacI; LacI family DNA-binding transcriptional regulator K27069 lacI; LacI family transcriptional regulator, lactose operon repressor
D C3F35_06445 lacI; lac repressor K27069 lacI; LacI family transcriptional regulator, lactose operon repressor
D C3F35_11855 transcriptional regulator RbsR K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D C3F35_12150 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D C3F35_03240 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D C3F35_03625 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D C3F35_19400 HTH-type transcriptional regulator GalS K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D C3F35_16165 HTH-type transcriptional regulator GalR K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D C3F35_10810 LacI family DNA-binding transcriptional regulator K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor
D C3F35_12350 DNA-binding transcriptional regulator CytR K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D C3F35_19635 LacI family DNA-binding transcriptional regulator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D C3F35_08080 catabolite repressor/activator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D C3F35_24040 transcriptional regulator K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D C3F35_24430 transcriptional regulator K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D C3F35_09300 treR; trehalose operon repressor K03485 treR; LacI family transcriptional regulator, trehalose operon repressor
D C3F35_16635 LacI family DNA-binding transcriptional regulator K03487 ascG; LacI family transcriptional regulator, asc operon repressor
D C3F35_01655 HTH-type transcriptional repressor PurR K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D C3F35_13410 LacI family DNA-binding transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D C3F35_01445 Mal regulon transcriptional regulator MalI K16136 malI; LacI family transcriptional regulator, maltose regulon regulatory protein
D C3F35_06195 Mal regulon transcriptional regulator MalI K16136 malI; LacI family transcriptional regulator, maltose regulon regulatory protein
C GntR family
D C3F35_10085 phosphonate metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D C3F35_04865 histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D C3F35_05075 UTRA domain-containing protein K11922 mngR; GntR family transcriptional regulator, mannosyl-D-glycerate transport/metabolism system repressor
D C3F35_21140 fatty acid metabolism transcriptional regulator FadR K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D C3F35_07915 pyruvate dehydrogenase complex transcriptional repressor PdhR K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D C3F35_16155 FCD domain-containing protein K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor
D C3F35_11595 FadR family transcriptional regulator K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor
D C3F35_14975 transcriptional regulator ExuR K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor
D C3F35_11030 transcriptional regulator LldR K14348 lldR; GntR family transcriptional regulator, L-lactate dehydrogenase operon regulator
D C3F35_11560 FadR family transcriptional regulator K19776 dgoR; GntR family transcriptional regulator, galactonate operon transcriptional repressor
D C3F35_17310 nanR; transcriptional regulator NanR K22104 nanR; GntR family transcriptional regulator, sialic acid-inducible nan operon repressor
D C3F35_00520 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D C3F35_08970 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D C3F35_23045 FCD domain-containing protein K13654 mcbR; GntR family transcriptional regulator, colanic acid and biofilm gene transcriptional regulator
D C3F35_09155 transcriptional regulator K15735 csiR; GntR family transcriptional regulator, carbon starvation induced regulator
D C3F35_00845 GntR family transcriptional regulator K22293 rspR; GntR family transcriptional regulator, rspAB operon transcriptional repressor
C TetR/AcrR family
D C3F35_06395 DNA-binding transcriptional repressor AcrR K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D C3F35_11195 nucleoid occlusion factor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator
D C3F35_03155 pyrimidine utilization regulatory protein R K09017 rutR; TetR/AcrR family transcriptional regulator
D C3F35_11350 TetR/AcrR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator
D C3F35_01605 TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D C3F35_25420 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D C3F35_01085 TetR family transcriptional regulator K16138 uidR; TetR/AcrR family transcriptional regulator, repressor for uid operon
D C3F35_14180 acrEF/envCD operon transcriptional regulator K18140 envR; TetR/AcrR family transcriptional regulator, acrEF/envCD operon repressor
D C3F35_02650 TetR family transcriptional regulator K22041 comR; TetR/AcrR family transcriptional regulator, copper-responsive repressor
D C3F35_12475 HTH-type transcriptional repressor FabR K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D C3F35_04735 transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
D C3F35_04390 DNA-binding transcriptional regulator K23778 rcdA; TetR/AcrR family transcriptional regulator, regulator of biofilm formation and stress response
C Lrp/AsnC family
D C3F35_11805 transcriptional regulator AsnC K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D C3F35_04005 leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D C3F35_21560 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D C3F35_22705 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D C3F35_06510 Lrp/AsnC family transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
D C3F35_20210 transcriptional regulator RcsA K07781 rcsA; LuxR family transcriptional regulator, capsular biosynthesis positive transcription factor
D C3F35_03010 transcriptional regulator CsgD K04333 csgD; LuxR family transcriptional regulator, csgAB operon transcriptional regulatory protein
D C3F35_08615 helix-turn-helix transcriptional regulator K22650 bglJ; LuxR family transcriptional regulator, regulator of transport and utilization of aryl beta-glucosides
D C3F35_13480 HTH-type transcriptional regulator MalT K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
C MarR family
D C3F35_00725 multiple antibiotic resistance transcriptional regulator MarR K03712 marR; MarR family transcriptional regulator, multiple antibiotic resistance protein MarR
D C3F35_01565 transcriptional regulator SlyA K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D C3F35_08920 MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D C3F35_16765 transcriptional repressor MprA K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB
D C3F35_07055 MarR family transcriptional regulator K22296 nicR; MarR family transcriptional regulator, lower aerobic nicotinate degradation pathway regulator
D C3F35_21220 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D C3F35_26055 merR; Hg(II)-responsive transcriptional regulator K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein
D C3F35_24640 merR; Hg(II)-responsive transcriptional regulator K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein
D C3F35_26080 merD; transcriptional regulator K19057 merD; MerR family transcriptional regulator, mercuric resistance operon regulatory protein
D C3F35_24615 merD; transcriptional regulator K19057 merD; MerR family transcriptional regulator, mercuric resistance operon regulatory protein
D C3F35_06300 HTH-type transcriptional regulator CueR K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D C3F35_14030 Zn(2+)-responsive transcriptional regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
D C3F35_10270 redox-sensitive transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
D C3F35_19540 HTH-type transcriptional regulator MlrA K21089 mlrA; MerR family transcriptional regulator, activator of the csg genes
D C3F35_19730 helix-turn-helix-type transcriptional regulator K21972 bluR; MerR family transcriptional regulator, repressor of blue light- and temperature-responsive genes
C Fur family
D C3F35_05240 ferric iron uptake transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D C3F35_10365 transcriptional regulator Zur K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
D C3F35_10505 acetate operon transcriptional repressor IclR K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D C3F35_20955 DNA-binding transcriptional regulator KdgR K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D C3F35_09230 IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
C CRP/FNR family
D C3F35_13725 cAMP-activated global transcriptional regulator CRP K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D C3F35_01350 transcriptional regulator FNR K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
D C3F35_17790 Fe-S cluster assembly transcriptional regulator IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D C3F35_09715 HTH-type transcriptional repressor NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
D C3F35_23835 transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D C3F35_09525 transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D C3F35_24370 transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D C3F35_07235 transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
C XRE family
D C3F35_22905 XRE family transcriptional regulator K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
C PadR family
D C3F35_24360 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
C Other families
D C3F35_04610 transcriptional regulator MntR K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D C3F35_20820 MurR/RpiR family transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D C3F35_12970 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D C3F35_14195 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D C3F35_08460 trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D C3F35_14600 transcriptional regulator K07724 ner; Ner family transcriptional regulator
D C3F35_08140 transcriptional regulator SgrR K11925 sgrR; SgrR family transcriptional regulator
D C3F35_08480 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D C3F35_00465 transcriptional regulator K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D C3F35_25425 XRE family transcriptional regulator K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D C3F35_23920 transcriptional regulator K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D C3F35_04480 Fis family transcriptional regulator K19505 gfrR; sigma-54 dependent transcriptional regulator, gfr operon transcriptional activator
D C3F35_16660 nitric oxide reductase transcriptional regulator NorR K12266 norR; anaerobic nitric oxide reductase transcription regulator
D C3F35_16790 formate hydrogenlyase transcriptional activator FlhA K15836 fhlA; formate hydrogenlyase transcriptional activator
D C3F35_07700 CdaR family transcriptional regulator K02647 cdaR; carbohydrate diacid regulator
D C3F35_04915 molybdenum-dependent transcriptional regulator K02019 modE; molybdate transport system regulatory protein
D C3F35_10850 transcriptional regulator K07726 K07726; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
D C3F35_12370 met regulon transcriptional regulator MetJ K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D C3F35_03145 putA; bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D C3F35_25585 antitoxin RelB K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
B Other transcription factors
C BglG family
D C3F35_19455 PRD domain-containing protein K03488 licT; beta-glucoside operon transcriptional antiterminator
C Others
D C3F35_26335 hypothetical protein K23239 frmR; FrmR/RcnR family transcriptional regulator, repressor of frmRAB operon
D C3F35_25400 regulator protein FrmR K23239 frmR; FrmR/RcnR family transcriptional regulator, repressor of frmRAB operon
D C3F35_22760 metal/formaldehyde-sensitive transcriptional repressor K23239 frmR; FrmR/RcnR family transcriptional regulator, repressor of frmRAB operon
D C3F35_06580 BolA family transcriptional regulator K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D C3F35_05955 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D C3F35_25080 peptide transporter K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D C3F35_23985 plasmid-partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D C3F35_24885 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D C3F35_12890 transcription/translation regulatory transformer protein RfaH K05785 rfaH; transcriptional antiterminator RfaH
D C3F35_23205 transcriptional antiterminator NusG K05785 rfaH; transcriptional antiterminator RfaH
D C3F35_14350 transcriptional regulator ArgR K03402 argR; transcriptional regulator of arginine metabolism
D C3F35_05275 ROK family transcriptional regulator K02565 nagC; N-acetylglucosamine repressor
D C3F35_01265 transcriptional regulator K15545 mlc; transcriptional regulator of PTS gene
D C3F35_11015 MltR family transcriptional regulator K02562 mtlR; mannitol operon repressor
D C3F35_22015 transcriptional regulator TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D C3F35_18160 glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor
D C3F35_22360 paaX; phenylacetic acid degradation operon negative regulatory protein PaaX K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D C3F35_21920 phage shock protein operon transcriptional activator K03974 pspF; psp operon transcriptional activator
D C3F35_21935 envelope stress response membrane protein PspC K03973 pspC; phage shock protein C
D C3F35_15040 transcriptional regulator LsrR K11531 lsrR; lsr operon transcriptional repressor
D C3F35_05505 nucleoside diphosphate kinase regulator K06140 rnk; regulator of nucleoside diphosphate kinase
D C3F35_17925 hypothetical protein K07733 alpA; prophage regulatory protein
D C3F35_07175 AlpA family phage regulatory protein K07733 alpA; prophage regulatory protein
D C3F35_15755 YqgE/AlgH family protein K07735 algH; putative transcriptional regulator
D C3F35_07785 dksA; RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor
D C3F35_06685 transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D C3F35_07340 Crl family RNA polymerase assembly factor K11926 crl; sigma factor-binding protein Crl
D C3F35_10470 transcriptional regulator K14414 rtcR; transcriptional regulatory protein RtcR
D C3F35_08075 transcriptional regulator MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0