+D GENES KO #

  KEGG Orthology (KO) - Lysobacter helvus

% ! A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:lhx00010] D LYSHEL_22820 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D LYSHEL_23910 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D LYSHEL_16910 pfkA; pyrophosphate--fructose 6-phosphate 1-phosphotransferase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D LYSHEL_12250 fbp; fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D LYSHEL_06120 putative fructose-bisphosphate aldolase class 1 K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D LYSHEL_25060 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D LYSHEL_17510 gapA; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D LYSHEL_06170 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D LYSHEL_14150 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D LYSHEL_03750 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D LYSHEL_06150 pykA; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D LYSHEL_28330 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D LYSHEL_14830 aceE; pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D LYSHEL_15790 phdB; acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D LYSHEL_30420 ldp; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D LYSHEL_15800 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D LYSHEL_14510 S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D LYSHEL_22400 zinc-binding dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D LYSHEL_11880 acsA; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D LYSHEL_16980 hypothetical protein K20866 yihX; glucose-1-phosphatase [EC:3.1.3.10] D LYSHEL_14020 hypothetical protein K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D LYSHEL_18060 pckG; phosphoenolpyruvate carboxykinase [GTP] K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] C 00020 Citrate cycle (TCA cycle) [PATH:lhx00020] D LYSHEL_17290 gltA; citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D LYSHEL_28700 rpfA; aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3] D LYSHEL_12620 icd_2; isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D LYSHEL_02780 icd_1; isocitrate dehydrogenase K00030 IDH3; isocitrate dehydrogenase (NAD+) [EC:1.1.1.41] D LYSHEL_30400 sucA; 2-oxoglutarate dehydrogenase subunit E1 K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D LYSHEL_30410 sucB; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D LYSHEL_30420 ldp; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D LYSHEL_15800 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D LYSHEL_07600 sucD; succinate--CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D LYSHEL_07610 sucC; succinate--CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D LYSHEL_24770 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D LYSHEL_24780 sdhB; succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D LYSHEL_24750 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D LYSHEL_24760 sdhD; succinate dehydrogenase membrane anchor subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit D LYSHEL_24550 fumB; fumarate hydratase class I K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D LYSHEL_30350 fumC; fumarate hydratase class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D LYSHEL_04660 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D LYSHEL_18060 pckG; phosphoenolpyruvate carboxykinase [GTP] K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] D LYSHEL_14830 aceE; pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D LYSHEL_15790 phdB; acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] C 00030 Pentose phosphate pathway [PATH:lhx00030] D LYSHEL_23910 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D LYSHEL_22790 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D LYSHEL_22800 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31] D LYSHEL_09140 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D LYSHEL_17440 tktA; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D LYSHEL_17070 rpiA; ribose-5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D LYSHEL_17830 rbsK; ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15] D LYSHEL_14020 hypothetical protein K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D LYSHEL_05210 prs; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D LYSHEL_22810 edd; phosphogluconate dehydratase K01690 edd; phosphogluconate dehydratase [EC:4.2.1.12] D LYSHEL_22830 ketohydroxyglutarate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D LYSHEL_06120 putative fructose-bisphosphate aldolase class 1 K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D LYSHEL_12250 fbp; fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D LYSHEL_16910 pfkA; pyrophosphate--fructose 6-phosphate 1-phosphotransferase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] C 00040 Pentose and glucuronate interconversions [PATH:lhx00040] D LYSHEL_30280 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D LYSHEL_28050 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D LYSHEL_09140 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] C 00051 Fructose and mannose metabolism [PATH:lhx00051] D LYSHEL_08670 xanB; xanthan biosynthesis protein XanB K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D LYSHEL_14020 hypothetical protein K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D LYSHEL_07680 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D LYSHEL_07690 wcaG; GDP-L-fucose synthase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D LYSHEL_16910 pfkA; pyrophosphate--fructose 6-phosphate 1-phosphotransferase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D LYSHEL_12250 fbp; fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D LYSHEL_06120 putative fructose-bisphosphate aldolase class 1 K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D LYSHEL_25060 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D LYSHEL_18520 hypothetical protein K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D LYSHEL_14970 2-deoxyglucose-6-phosphatase K24204 hxpB; mannitol-1-/sugar-/sorbitol-6-/2-deoxyglucose-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50 3.1.3.68] C 00052 Galactose metabolism [PATH:lhx00052] D LYSHEL_06580 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D LYSHEL_13750 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D LYSHEL_28050 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D LYSHEL_14020 hypothetical protein K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D LYSHEL_22820 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D LYSHEL_16910 pfkA; pyrophosphate--fructose 6-phosphate 1-phosphotransferase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D LYSHEL_21170 alpha-glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D LYSHEL_22900 aglA; alpha-glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20] C 00053 Ascorbate and aldarate metabolism [PATH:lhx00053] D LYSHEL_30280 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D LYSHEL_11830 wbnF; nucleotide sugar epimerase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] C 00500 Starch and sucrose metabolism [PATH:lhx00500] D LYSHEL_21170 alpha-glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D LYSHEL_22900 aglA; alpha-glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D LYSHEL_28050 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D LYSHEL_30590 beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] D LYSHEL_13580 ostA; alpha,alpha-trehalose-phosphate synthase (UDP-forming) K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347] D LYSHEL_13560 ostB; trehalose 6-phosphate phosphatase K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12] D LYSHEL_14020 hypothetical protein K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D LYSHEL_22820 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D LYSHEL_23910 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:lhx00520] D LYSHEL_02110 nagZ; beta-hexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D LYSHEL_15980 glmS; glutamine--fructose-6-phosphate aminotransferase [isomerizing] K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D LYSHEL_24260 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D LYSHEL_15910 glmU; bifunctional protein GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D LYSHEL_14080 anmK; anhydro-N-acetylmuramic acid kinase K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170] D LYSHEL_01370 gph; phosphoglycolate phosphatase K22292 mupP; N-acetyl-D-muramate 6-phosphate phosphatase [EC:3.1.3.105] D LYSHEL_18730 aminoglycoside phosphotransferase K07102 amgK; N-acetylmuramate 1-kinase [EC:2.7.1.221] D LYSHEL_18720 glgC; mannose-1-phosphate guanylyltransferase K00992 murU; N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase [EC:2.7.7.99] D LYSHEL_18640 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D LYSHEL_23750 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D LYSHEL_25730 wbpA; UDP-N-acetyl-d-glucosamine 6-dehydrogenase WbpA K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-] D LYSHEL_22820 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D LYSHEL_14020 hypothetical protein K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D LYSHEL_28050 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D LYSHEL_30280 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D LYSHEL_06580 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D LYSHEL_13750 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D LYSHEL_11830 wbnF; nucleotide sugar epimerase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] D LYSHEL_18520 hypothetical protein K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D LYSHEL_23910 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D LYSHEL_08670 xanB; xanthan biosynthesis protein XanB K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D LYSHEL_07680 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D LYSHEL_07690 wcaG; GDP-L-fucose synthase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] C 00620 Pyruvate metabolism [PATH:lhx00620] D LYSHEL_11880 acsA; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D LYSHEL_14830 aceE; pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D LYSHEL_15790 phdB; acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D LYSHEL_30420 ldp; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D LYSHEL_15800 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D LYSHEL_14510 S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D LYSHEL_22400 zinc-binding dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D LYSHEL_06150 pykA; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D LYSHEL_21160 accA; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D LYSHEL_16490 bccP; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D LYSHEL_16480 accC_2; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D LYSHEL_24250 accD_2; acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D LYSHEL_05310 hypothetical protein K01512 acyP; acylphosphatase [EC:3.6.1.7] D LYSHEL_16970 lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D LYSHEL_02620 gloB; hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D LYSHEL_14770 maeB; malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D LYSHEL_04660 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D LYSHEL_24550 fumB; fumarate hydratase class I K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D LYSHEL_30350 fumC; fumarate hydratase class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D LYSHEL_18060 pckG; phosphoenolpyruvate carboxykinase [GTP] K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] D LYSHEL_28330 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D LYSHEL_13790 mls; malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9] D LYSHEL_00790 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LYSHEL_13090 yfcY; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:lhx00630] D LYSHEL_13800 aceA; isocitrate lyase K01637 E4.1.3.1; isocitrate lyase [EC:4.1.3.1] D LYSHEL_11880 acsA; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D LYSHEL_13790 mls; malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9] D LYSHEL_04660 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D LYSHEL_17290 gltA; citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D LYSHEL_28700 rpfA; aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3] D LYSHEL_00790 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LYSHEL_13090 yfcY; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LYSHEL_01460 phbB; beta-ketoacyl-ACP reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36] D LYSHEL_01480 phbB-1; beta-ketoacyl-ACP reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36] D LYSHEL_13500 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D LYSHEL_08200 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D LYSHEL_19080 gcvP; glycine dehydrogenase (decarboxylating) K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D LYSHEL_17930 gcvT; aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D LYSHEL_30420 ldp; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D LYSHEL_15800 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D LYSHEL_17940 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D LYSHEL_22830 ketohydroxyglutarate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D LYSHEL_03810 hutG; N-formylglutamate deformylase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68] C 00640 Propanoate metabolism [PATH:lhx00640] D LYSHEL_11880 acsA; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D LYSHEL_09310 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D LYSHEL_09320 pdhB_1; 2-oxoisovalerate dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D LYSHEL_24720 MFS transporter K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4] D LYSHEL_09330 pdhB_2; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D LYSHEL_30420 ldp; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D LYSHEL_15800 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D LYSHEL_30450 quinone oxidoreductase K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-] D LYSHEL_02240 fadB_1; 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D LYSHEL_21160 accA; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D LYSHEL_16490 bccP; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D LYSHEL_16480 accC_2; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D LYSHEL_24250 accD_2; acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D LYSHEL_07610 sucC; succinate--CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D LYSHEL_07600 sucD; succinate--CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D LYSHEL_04630 prpC; citrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5] D LYSHEL_04570 prpD; 2-methylcitrate dehydratase K01720 prpD; 2-methylcitrate dehydratase [EC:4.2.1.79] D LYSHEL_04650 prpB; 2-methylisocitrate lyase K03417 prpB; methylisocitrate lyase [EC:4.1.3.30] C 00650 Butanoate metabolism [PATH:lhx00650] D LYSHEL_00790 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LYSHEL_13090 yfcY; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LYSHEL_28090 fadB_2; 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D LYSHEL_02240 fadB_1; 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D LYSHEL_23140 crt; enoyl-CoA hydratase K01715 crt; enoyl-CoA hydratase [EC:4.2.1.17] D LYSHEL_24990 phbC; poly-beta-hydroxybutyrate polymerase K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304] D LYSHEL_24980 phaE; class III poly(R)-hydroxyalkanoic acid synthase subunit PhaE K22881 phaE; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaE D LYSHEL_01460 phbB; beta-ketoacyl-ACP reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36] D LYSHEL_01480 phbB-1; beta-ketoacyl-ACP reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36] D LYSHEL_24770 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D LYSHEL_24780 sdhB; succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D LYSHEL_24750 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D LYSHEL_24760 sdhD; succinate dehydrogenase membrane anchor subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit D LYSHEL_21700 gabD; NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D LYSHEL_00900 mvaB; hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D LYSHEL_08660 lpsI; succinyl-CoA:3-ketoacid coenzyme A transferase subunit A K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] D LYSHEL_08650 lpsJ; succinyl-CoA:3-ketoacid coenzyme A transferase subunit B K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] D LYSHEL_24950 hbdH1; 3-hydroxybutyrate dehydrogenase K00019 BDH1; 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30] D LYSHEL_24960 D-(-)-3-hydroxybutyrate oligomer hydrolase K07518 E3.1.1.22; hydroxybutyrate-dimer hydrolase [EC:3.1.1.22] C 00660 C5-Branched dibasic acid metabolism D LYSHEL_07610 sucC; succinate--CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D LYSHEL_07600 sucD; succinate--CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] C 00562 Inositol phosphate metabolism [PATH:lhx00562] D LYSHEL_01190 hypothetical protein K01771 plc; 1-phosphatidylinositol phosphodiesterase [EC:4.6.1.13] D LYSHEL_20630 suhB; inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D LYSHEL_18220 phytase K01083 E3.1.3.8; 3-phytase [EC:3.1.3.8] D LYSHEL_25060 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:lhx00190] D LYSHEL_25080 nuoA; NADH-quinone oxidoreductase subunit A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2] D LYSHEL_25090 nuoB; NADH-quinone oxidoreductase subunit B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2] D LYSHEL_25100 nuoC; NADH-quinone oxidoreductase subunit C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2] D LYSHEL_25110 nuoD; NADH-quinone oxidoreductase subunit D K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2] D LYSHEL_25120 nuoE; NADH-quinone oxidoreductase subunit E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2] D LYSHEL_25130 nuoF; NADH-quinone oxidoreductase subunit F K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2] D LYSHEL_25140 nuoG; NADH-quinone oxidoreductase K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2] D LYSHEL_25150 nuoH; NADH-quinone oxidoreductase subunit H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2] D LYSHEL_25160 nuoI; NADH-quinone oxidoreductase subunit I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2] D LYSHEL_25170 nuoJ; NADH:ubiquinone oxidoreductase subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2] D LYSHEL_25180 nuoK; NADH-quinone oxidoreductase subunit K K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2] D LYSHEL_25190 nuoL; NADH-quinone oxidoreductase subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2] D LYSHEL_25200 nuoM; NADH-quinone oxidoreductase subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2] D LYSHEL_25210 nuoN; NADH-quinone oxidoreductase subunit N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2] D LYSHEL_10390 ndh; NADH dehydrogenase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D LYSHEL_24770 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D LYSHEL_24780 sdhB; succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D LYSHEL_24750 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D LYSHEL_24760 sdhD; succinate dehydrogenase membrane anchor subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit D LYSHEL_19870 petA; ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D LYSHEL_19880 petB; cytochrome b K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D LYSHEL_19890 petC; cytochrome c K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit D LYSHEL_14320 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D LYSHEL_14270 cox3; cytochrome c oxidase subunit III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9] D LYSHEL_14240 ctaD; cytochrome c oxidase subunit 1 K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9] D LYSHEL_14230 ctaC; cytochrome c oxidase subunit 2 K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9] D LYSHEL_14260 cox11; cytochrome c oxidase assembly protein K02258 COX11; cytochrome c oxidase assembly protein subunit 11 D LYSHEL_14310 cytochrome oxidase assembly protein K02259 COX15; heme a synthase [EC:1.17.99.9] D LYSHEL_27590 cytochrome c oxidase, cbb3-type subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9] D LYSHEL_27600 cytochrome-c oxidase, cbb3-type subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II D LYSHEL_27610 hypothetical protein K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV D LYSHEL_27620 ccoP1; Cbb3-type cytochrome c oxidase subunit K00406 ccoP; cytochrome c oxidase cbb3-type subunit III D LYSHEL_10690 cydA-2; cytochrome bd oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D LYSHEL_10700 cydB; cytochrome D ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D LYSHEL_15860 atpA; ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D LYSHEL_15880 atpD; ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D LYSHEL_15870 atpG; ATP synthase gamma chain K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D LYSHEL_15850 atpH; ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D LYSHEL_15890 atpC; ATP synthase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D LYSHEL_15820 atpB; ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a D LYSHEL_15840 atpF; ATP synthase subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b D LYSHEL_15830 atpE-1; ATP synthase subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c D LYSHEL_16840 ppa; inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1] D LYSHEL_02840 ppk; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D LYSHEL_29430 polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D LYSHEL_05300 transcriptional regulator K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation in photosynthetic organisms C 00720 Carbon fixation pathways in prokaryotes C 00680 Methane metabolism [PATH:lhx00680] D LYSHEL_14510 S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D LYSHEL_14520 S-formylglutathione hydrolase K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12] D LYSHEL_08200 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D LYSHEL_03750 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D LYSHEL_04660 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D LYSHEL_06120 putative fructose-bisphosphate aldolase class 1 K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D LYSHEL_12250 fbp; fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D LYSHEL_16910 pfkA; pyrophosphate--fructose 6-phosphate 1-phosphotransferase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D LYSHEL_11880 acsA; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D LYSHEL_28330 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D LYSHEL_14150 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D LYSHEL_04480 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D LYSHEL_27470 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00910 Nitrogen metabolism [PATH:lhx00910] D LYSHEL_07210 anaerobically induced outer membrane protein K00368 nirK; nitrite reductase (NO-forming) [EC:1.7.2.1] D LYSHEL_07270 nitric-oxide reductase large subunit K04561 norB; nitric oxide reductase subunit B [EC:1.7.2.5] D LYSHEL_29390 2-nitropropane dioxygenase K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16] D LYSHEL_30200 glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D LYSHEL_13500 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D LYSHEL_29990 yadF; carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] D LYSHEL_26340 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] D LYSHEL_22500 carbonic anhydrase K01674 cah; carbonic anhydrase [EC:4.2.1.1] C 00920 Sulfur metabolism [PATH:lhx00920] D LYSHEL_18760 nodQ; adenylyl-sulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D LYSHEL_18750 cysD; sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D LYSHEL_17570 cysQ; 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D LYSHEL_11020 formate dehydrogenase K21307 soeA; sulfite dehydrogenase (quinone) subunit SoeA [EC:1.8.5.6] D LYSHEL_11010 ferredoxin K21308 soeB; sulfite dehydrogenase (quinone) subunit SoeB D LYSHEL_10990 DMSO reductase K21309 soeC; sulfite dehydrogenase (quinone) subunit SoeC D LYSHEL_23190 sseA; thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D LYSHEL_06070 cysK; cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47] D LYSHEL_07240 cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47] D LYSHEL_11740 hypothetical protein K01738 cysK; cysteine synthase [EC:2.5.1.47] D LYSHEL_30860 metX; homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D LYSHEL_18230 metA; homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D LYSHEL_18240 metB_2; cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D LYSHEL_19270 acyl-CoA dehydrogenase K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:lhx00061] D LYSHEL_21160 accA; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D LYSHEL_16490 bccP; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D LYSHEL_16480 accC_2; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D LYSHEL_24250 accD_2; acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D LYSHEL_02320 acpP; acyl carrier protein K02078 acpP; acyl carrier protein D LYSHEL_11560 acpC; acyl carrier protein K02078 acpP; acyl carrier protein D LYSHEL_02340 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D LYSHEL_01910 fabH_1; protein GumO K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D LYSHEL_02350 fabH_2; 3-oxoacyl-[acyl-carrier-protein] synthase 3 K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D LYSHEL_11440 fabF_2; beta-ketoacyl-[acyl-carrier-protein] synthase II K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D LYSHEL_02310 fabF_1; 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D LYSHEL_29970 short-chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D LYSHEL_02330 fabG_1; beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D LYSHEL_11490 fabG_3; 3-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D LYSHEL_21250 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D LYSHEL_02640 enoyl-[acyl-carrier-protein] reductase [NADH] K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D LYSHEL_28720 rpfB; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:lhx00071] D LYSHEL_00790 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LYSHEL_13090 yfcY; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LYSHEL_28080 fadA; acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D LYSHEL_02240 fadB_1; 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D LYSHEL_28090 fadB_2; 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D LYSHEL_18040 fadE; acyl-CoA dehydrogenase K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-] D LYSHEL_24680 gcdH; glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D LYSHEL_28720 rpfB; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D LYSHEL_14510 S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:lhx00561] D LYSHEL_22400 zinc-binding dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D LYSHEL_11990 plsB; glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] D LYSHEL_07520 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D LYSHEL_05930 dgkA; diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D LYSHEL_29840 hypothetical protein K00635 tgs; diacylglycerol O-acyltransferase / wax synthase [EC:2.3.1.20 2.3.1.75] D LYSHEL_19670 hypothetical protein K01046 lip; triacylglycerol lipase [EC:3.1.1.3] D LYSHEL_06410 glycosyl transferase family 1 K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337] C 00564 Glycerophospholipid metabolism [PATH:lhx00564] D LYSHEL_11240 gpsA; glycerol-3-phosphate dehydrogenase [NAD(P)+] K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D LYSHEL_11990 plsB; glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] D LYSHEL_07520 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D LYSHEL_05930 dgkA; diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D LYSHEL_03040 SAM-dependent methyltransferase K00570 pmtA; phosphatidylethanolamine/phosphatidyl-N-methylethanolamine N-methyltransferase [EC:2.1.1.17 2.1.1.71] D LYSHEL_21300 cdsA; phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D LYSHEL_08570 pssA_1; CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D LYSHEL_24970 pssA_2; CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D LYSHEL_24140 psd; phosphatidylserine decarboxylase proenzyme K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65] D LYSHEL_25370 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D LYSHEL_09020 hypothetical protein K18697 pgpC; phosphatidylglycerophosphatase C [EC:3.1.3.27] D LYSHEL_31270 clsB; cardiolipin synthase B K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] D LYSHEL_12290 cls_1; cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] D LYSHEL_24580 cls_3; cardiolipin synthase B K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] D LYSHEL_30720 hypothetical protein K17830 GGR; digeranylgeranylglycerophospholipid reductase [EC:1.3.1.101 1.3.7.11] C 00565 Ether lipid metabolism C 00600 Sphingolipid metabolism C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism [PATH:lhx00592] D LYSHEL_28080 fadA; acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01040 Biosynthesis of unsaturated fatty acids [PATH:lhx01040] D LYSHEL_06450 desC; delta 9 acyl-lipid fatty acid desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1] D LYSHEL_11900 fatty acid desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1] D LYSHEL_03090 tesB; acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-] B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:lhx00230] D LYSHEL_05530 DNA mismatch repair protein MutT K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D LYSHEL_17560 nudE; ADP compounds hydrolase NudE K08312 nudE; ADP compounds hydrolase [EC:3.6.1.-] D LYSHEL_14020 hypothetical protein K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D LYSHEL_05210 prs; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D LYSHEL_04440 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D LYSHEL_16410 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D LYSHEL_18670 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D LYSHEL_03140 purT; phosphoribosylglycinamide formyltransferase 2 K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21] D LYSHEL_08370 purL; phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] D LYSHEL_18680 purM; phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D LYSHEL_19970 purK; N5-carboxyaminoimidazole ribonucleotide synthase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] D LYSHEL_19960 purE; N5-carboxyaminoimidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D LYSHEL_09160 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D LYSHEL_30360 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D LYSHEL_16420 purH; bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D LYSHEL_30170 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D LYSHEL_03690 surE; 5'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D LYSHEL_07550 laccase domain protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D LYSHEL_02100 hpt; hypoxanthine-guanine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] D LYSHEL_28260 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D LYSHEL_28110 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D LYSHEL_17190 non-canonical purine NTP pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D LYSHEL_12130 guaA_1; GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D LYSHEL_28270 guaA_2; GMP synthase [glutamine-hydrolyzing] K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D LYSHEL_17220 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D LYSHEL_09960 nrdJa; ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D LYSHEL_13860 ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D LYSHEL_13870 nrdB; ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D LYSHEL_17240 spoT; bifunctional GTP diphosphokinase/guanosine-3',5'-bis(diphosphate) 3'-diphosphatase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D LYSHEL_02850 ppx; exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D LYSHEL_06340 relA; ATP--GTP 3'-pyrophosphotransferase K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5] D LYSHEL_03610 hypothetical protein K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D LYSHEL_10950 hypothetical protein K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D LYSHEL_21110 hypothetical protein K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D LYSHEL_26060 hypothetical protein K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D LYSHEL_26510 hypothetical protein K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D LYSHEL_03500 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D LYSHEL_10320 sugar kinase K00856 ADK; adenosine kinase [EC:2.7.1.20] D LYSHEL_14630 AMP nucleosidase K01241 amn; AMP nucleosidase [EC:3.2.2.4] D LYSHEL_20030 LOG family protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-] D LYSHEL_16920 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D LYSHEL_17580 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D LYSHEL_05830 apaH; bis(5'-nucleosyl)-tetraphosphatase, symmetrical K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41] D LYSHEL_18760 nodQ; adenylyl-sulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D LYSHEL_18750 cysD; sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] C 00240 Pyrimidine metabolism [PATH:lhx00240] D LYSHEL_28850 carB; carbamoyl-phosphate synthase large chain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D LYSHEL_28880 carA; carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D LYSHEL_18460 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D LYSHEL_01330 pyrC; dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3] D LYSHEL_23760 pyrD; dihydroorotate dehydrogenase (quinone) K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2] D LYSHEL_14040 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D LYSHEL_08220 pyrF; orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D LYSHEL_21340 pyrH; uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D LYSHEL_28110 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D LYSHEL_17580 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D LYSHEL_21020 Maf-like protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D LYSHEL_26190 metal-dependent hydrolase K07043 upp; UTP pyrophosphatase [EC:3.6.1.-] D LYSHEL_03770 pyrG; CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D LYSHEL_27980 cmk; cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D LYSHEL_30170 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D LYSHEL_03690 surE; 5'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D LYSHEL_20030 LOG family protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-] D LYSHEL_24030 dcd; dCTP deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13] D LYSHEL_09960 nrdJa; ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D LYSHEL_13860 ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D LYSHEL_13870 nrdB; ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D LYSHEL_02270 tmk; thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D LYSHEL_14010 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D LYSHEL_11940 tdk; thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21] D LYSHEL_05870 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] D LYSHEL_25900 hypothetical protein K09023 rutD; aminoacrylate hydrolase [EC:3.5.1.-] D LYSHEL_16650 putative NADH dehydrogenase/NAD(P)H nitroreductase K09019 rutE; 3-hydroxypropanoate dehydrogenase [EC:1.1.1.-] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:lhx00250] D LYSHEL_04670 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D LYSHEL_05360 aspG; asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D LYSHEL_05950 ansA; isoaspartyl peptidase/L-asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D LYSHEL_23430 hypothetical protein K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D LYSHEL_23440 hypothetical protein K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D LYSHEL_30740 hydrolase K13566 NIT2; omega-amidase [EC:3.5.1.3] D LYSHEL_14730 aspC; aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D LYSHEL_28590 alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D LYSHEL_01250 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D LYSHEL_01200 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D LYSHEL_03500 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D LYSHEL_30360 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D LYSHEL_18460 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D LYSHEL_21700 gabD; NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D LYSHEL_30200 glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D LYSHEL_14210 putA; bifunctional protein PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D LYSHEL_13500 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D LYSHEL_28850 carB; carbamoyl-phosphate synthase large chain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D LYSHEL_28880 carA; carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D LYSHEL_15980 glmS; glutamine--fructose-6-phosphate aminotransferase [isomerizing] K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D LYSHEL_04440 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:lhx00260] D LYSHEL_19030 lysA; aspartate kinase K12526 lysAC; bifunctional diaminopimelate decarboxylase / aspartate kinase [EC:4.1.1.20 2.7.2.4] D LYSHEL_24180 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D LYSHEL_18250 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D LYSHEL_16800 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39] D LYSHEL_15310 hypothetical protein K01620 ltaE; threonine aldolase [EC:4.1.2.48] D LYSHEL_08200 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D LYSHEL_14150 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D LYSHEL_04480 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D LYSHEL_27470 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D LYSHEL_04530 kbl; 2-amino-3-ketobutyrate coenzyme A ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29] D LYSHEL_04520 tdh; L-threonine 3-dehydrogenase K00060 tdh; threonine 3-dehydrogenase [EC:1.1.1.103] D LYSHEL_19080 gcvP; glycine dehydrogenase (decarboxylating) K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D LYSHEL_17930 gcvT; aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D LYSHEL_30420 ldp; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D LYSHEL_15800 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D LYSHEL_17940 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D LYSHEL_08570 pssA_1; CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D LYSHEL_24970 pssA_2; CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D LYSHEL_08850 cysB; cystathionine beta-synthase K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22] D LYSHEL_08840 metB_1; cystathionine gamma-synthase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1] D LYSHEL_18270 sdaA; L-serine dehydratase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D LYSHEL_12220 ilvA; serine/threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D LYSHEL_24240 trpA; tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D LYSHEL_24220 trpB; tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] C 00270 Cysteine and methionine metabolism [PATH:lhx00270] D LYSHEL_06070 cysK; cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47] D LYSHEL_07240 cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47] D LYSHEL_11740 hypothetical protein K01738 cysK; cysteine synthase [EC:2.5.1.47] D LYSHEL_08840 metB_1; cystathionine gamma-synthase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1] D LYSHEL_08850 cysB; cystathionine beta-synthase K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22] D LYSHEL_30240 metH2; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D LYSHEL_30230 metH1; 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D LYSHEL_17800 metK; S-adenosylmethionine synthase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D LYSHEL_08990 speD; S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D LYSHEL_09840 speE1; polyamine aminopropyltransferase 1 K00797 speE; spermidine synthase [EC:2.5.1.16] D LYSHEL_13920 speE; polyamine aminopropyltransferase K00797 speE; spermidine synthase [EC:2.5.1.16] D LYSHEL_07550 laccase domain protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D LYSHEL_01390 N-ethylammeline chlorohydrolase K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28] D LYSHEL_02090 putative S-methyl-5'-thioinosine phosphorylase K19696 mtiP; 5'-methylthioinosine phosphorylase [EC:2.4.2.44] D LYSHEL_30520 mtnA; methylthioribose-1-phosphate isomerase K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23] D LYSHEL_00980 mtnB; methylthioribulose-1-phosphate dehydratase K08964 mtnB; methylthioribulose-1-phosphate dehydratase [EC:4.2.1.109] D LYSHEL_01000 mtnC; enolase-phosphatase E1 K09880 mtnC; enolase-phosphatase E1 [EC:3.1.3.77] D LYSHEL_00990 mtnD; acireductone dioxygenase K08967 mtnD; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [EC:1.13.11.53 1.13.11.54] D LYSHEL_16040 diguanylate cyclase K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14] D LYSHEL_17790 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D LYSHEL_19030 lysA; aspartate kinase K12526 lysAC; bifunctional diaminopimelate decarboxylase / aspartate kinase [EC:4.1.1.20 2.7.2.4] D LYSHEL_24180 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D LYSHEL_18250 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D LYSHEL_30860 metX; homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D LYSHEL_18230 metA; homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D LYSHEL_18240 metB_2; cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D LYSHEL_17750 ilvE; branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D LYSHEL_14490 gsh1; glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D LYSHEL_06250 gshB; glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3] D LYSHEL_04670 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D LYSHEL_23190 sseA; thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D LYSHEL_04660 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D LYSHEL_18270 sdaA; L-serine dehydratase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D LYSHEL_04480 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D LYSHEL_27470 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00280 Valine, leucine and isoleucine degradation [PATH:lhx00280] D LYSHEL_17750 ilvE; branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D LYSHEL_00770 leu; leucine dehydrogenase K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9] D LYSHEL_09310 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D LYSHEL_09320 pdhB_1; 2-oxoisovalerate dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D LYSHEL_24720 MFS transporter K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4] D LYSHEL_09330 pdhB_2; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D LYSHEL_30420 ldp; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D LYSHEL_15800 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D LYSHEL_00780 acdA_1; acyl-CoA dehydrogenase K00253 IVD; isovaleryl-CoA dehydrogenase [EC:1.3.8.4] D LYSHEL_02240 fadB_1; 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D LYSHEL_28080 fadA; acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D LYSHEL_00890 accC_1; 3-methylcrotonyl-CoA carboxylase subunit alpha K01968 MCCC1; 3-methylcrotonyl-CoA carboxylase alpha subunit [EC:6.4.1.4] D LYSHEL_00820 accD_1; methylcrotonoyl-CoA carboxylase K01969 MCCC2; 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4] D LYSHEL_00880 enoyl-CoA hydratase K13766 liuC; methylglutaconyl-CoA hydratase [EC:4.2.1.18] D LYSHEL_00900 mvaB; hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D LYSHEL_08660 lpsI; succinyl-CoA:3-ketoacid coenzyme A transferase subunit A K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] D LYSHEL_08650 lpsJ; succinyl-CoA:3-ketoacid coenzyme A transferase subunit B K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] D LYSHEL_00790 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LYSHEL_13090 yfcY; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:lhx00290] D LYSHEL_12220 ilvA; serine/threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D LYSHEL_17750 ilvE; branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D LYSHEL_00770 leu; leucine dehydrogenase K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9] D LYSHEL_14730 aspC; aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] C 00300 Lysine biosynthesis [PATH:lhx00300] D LYSHEL_18250 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D LYSHEL_19030 lysA; aspartate kinase K12526 lysAC; bifunctional diaminopimelate decarboxylase / aspartate kinase [EC:4.1.1.20 2.7.2.4] D LYSHEL_24180 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D LYSHEL_23830 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D LYSHEL_28890 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D LYSHEL_21420 hypothetical protein K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117] D LYSHEL_21440 dapE_2; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D LYSHEL_11090 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D LYSHEL_08000 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D LYSHEL_07990 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation [PATH:lhx00310] D LYSHEL_23770 aldehyde dehydrogenase K26061 amaB; L-aminoadipate-semialdehyde dehydrogenase D LYSHEL_30410 sucB; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D LYSHEL_30420 ldp; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D LYSHEL_15800 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D LYSHEL_24680 gcdH; glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D LYSHEL_02240 fadB_1; 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D LYSHEL_00790 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LYSHEL_13090 yfcY; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LYSHEL_21700 gabD; NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00220 Arginine biosynthesis [PATH:lhx00220] D LYSHEL_01260 argF'; N-acetylornithine carbamoyltransferase K09065 argF; N-acetylornithine carbamoyltransferase [EC:2.1.3.9] D LYSHEL_01250 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D LYSHEL_01200 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D LYSHEL_09400 argI; arginase K01476 rocF; arginase [EC:3.5.3.1] D LYSHEL_13500 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D LYSHEL_30200 glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D LYSHEL_04670 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D LYSHEL_14730 aspC; aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D LYSHEL_01230 argB; acetylglutamate kinase K22478 K22478; bifunctional N-acetylglutamate synthase/kinase [EC:2.3.1.1 2.7.2.8] D LYSHEL_01210 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] D LYSHEL_01240 argE; acetylornithine deacetylase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16] C 00330 Arginine and proline metabolism [PATH:lhx00330] D LYSHEL_29560 ldcC; arginine decarboxylase K01584 adiA; arginine decarboxylase [EC:4.1.1.19] D LYSHEL_29570 adi; arginine decarboxylase K01584 adiA; arginine decarboxylase [EC:4.1.1.19] D LYSHEL_13930 speA; biosynthetic arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19] D LYSHEL_27950 apolipoprotein acyltransferase K12251 aguB; N-carbamoylputrescine amidase [EC:3.5.1.53] D LYSHEL_29620 amino acid decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D LYSHEL_09840 speE1; polyamine aminopropyltransferase 1 K00797 speE; spermidine synthase [EC:2.5.1.16] D LYSHEL_13920 speE; polyamine aminopropyltransferase K00797 speE; spermidine synthase [EC:2.5.1.16] D LYSHEL_08990 speD; S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D LYSHEL_04740 gatAX; amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D LYSHEL_28070 FAD-binding oxidoreductase K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-] D LYSHEL_09400 argI; arginase K01476 rocF; arginase [EC:3.5.3.1] D LYSHEL_18400 proC; pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D LYSHEL_14210 putA; bifunctional protein PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D LYSHEL_05540 pip; proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D LYSHEL_09760 pepL; proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D LYSHEL_04670 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] C 00340 Histidine metabolism [PATH:lhx00340] D LYSHEL_01090 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17] D LYSHEL_01020 hisI; histidine biosynthesis bifunctional protein HisIE K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31] D LYSHEL_01040 hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] D LYSHEL_01050 hisH; imidazole glycerol phosphate synthase subunit HisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D LYSHEL_01030 hisF; imidazole glycerol phosphate synthase subunit HisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D LYSHEL_01060 hisB; histidine biosynthesis bifunctional protein HisB K01089 hisB; imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase [EC:4.2.1.19 3.1.3.15] D LYSHEL_01070 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D LYSHEL_27490 hisC2; histidinol-phosphate aminotransferase 2 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D LYSHEL_01080 hisD; histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] D LYSHEL_01110 hutH; histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D LYSHEL_04280 hutU; urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49] D LYSHEL_04360 hutI; imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7] D LYSHEL_04350 formimidoylglutamate deiminase K05603 hutF; formimidoylglutamate deiminase [EC:3.5.3.13] D LYSHEL_03810 hutG; N-formylglutamate deformylase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68] C 00350 Tyrosine metabolism [PATH:lhx00350] D LYSHEL_04670 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D LYSHEL_01070 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D LYSHEL_27490 hisC2; histidinol-phosphate aminotransferase 2 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D LYSHEL_09260 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D LYSHEL_09250 hmgA; homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5] D LYSHEL_08900 uptB; maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2] D LYSHEL_08910 uptA; fumarylacetoacetate hydrolase K16171 faaH; fumarylacetoacetate (FAA) hydrolase [EC:3.7.1.2] D LYSHEL_14510 S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D LYSHEL_21700 gabD; NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D LYSHEL_17630 fumarylacetoacetase K16165 nagK; fumarylpyruvate hydrolase [EC:3.7.1.20] C 00360 Phenylalanine metabolism [PATH:lhx00360] D LYSHEL_12800 phhA; phenylalanine 4-monooxygenase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] D LYSHEL_04670 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D LYSHEL_01070 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D LYSHEL_27490 hisC2; histidinol-phosphate aminotransferase 2 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D LYSHEL_09260 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D LYSHEL_03820 dadA; D-amino-acid dehydrogenase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D LYSHEL_04740 gatAX; amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D LYSHEL_18840 bedB; benzene 1,2-dioxygenase ferredoxin K05710 hcaC; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin component C 00380 Tryptophan metabolism [PATH:lhx00380] D LYSHEL_09290 kynA; tryptophan 2,3-dioxygenase K00453 TDO2; tryptophan 2,3-dioxygenase [EC:1.13.11.11] D LYSHEL_30100 kmo; kynurenine 3-monooxygenase K00486 KMO; kynurenine 3-monooxygenase [EC:1.14.13.9] D LYSHEL_30090 kynU; kynureninase K01556 KYNU; kynureninase [EC:3.7.1.3] D LYSHEL_30010 nbaC; 3-hydroxyanthranilate 3,4-dioxygenase K00452 HAAO; 3-hydroxyanthranilate 3,4-dioxygenase [EC:1.13.11.6] D LYSHEL_30080 amidohydrolase K03392 ACMSD; aminocarboxymuconate-semialdehyde decarboxylase [EC:4.1.1.45] D LYSHEL_29980 hpaE; 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase K10217 dmpC; aminomuconate-semialdehyde/2-hydroxymuconate-6-semialdehyde dehydrogenase [EC:1.2.1.32 1.2.1.85] D LYSHEL_30000 RutC family protein K15067 amnD; 2-aminomuconate deaminase [EC:3.5.99.5] D LYSHEL_30410 sucB; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D LYSHEL_30420 ldp; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D LYSHEL_15800 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D LYSHEL_24680 gcdH; glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D LYSHEL_02240 fadB_1; 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D LYSHEL_00790 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LYSHEL_13090 yfcY; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LYSHEL_04740 gatAX; amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:lhx00400] D LYSHEL_04760 dhs1; phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D LYSHEL_18350 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] D LYSHEL_16500 aroQ; 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10] D LYSHEL_11640 aroE; shikimate dehydrogenase (NADP(+)) K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D LYSHEL_18360 aroK; shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71] D LYSHEL_27500 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D LYSHEL_24170 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D LYSHEL_09130 trpE_2; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D LYSHEL_09060 trpG; glutamine amidotransferase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D LYSHEL_09050 trpD; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] D LYSHEL_24210 trpF; N-(5'-phosphoribosyl)anthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24] D LYSHEL_09030 trpC; indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48] D LYSHEL_24240 trpA; tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D LYSHEL_24220 trpB; tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D LYSHEL_27480 pheA; chorismate mutase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51] D LYSHEL_04670 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D LYSHEL_01070 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D LYSHEL_27490 hisC2; histidinol-phosphate aminotransferase 2 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D LYSHEL_12800 phhA; phenylalanine 4-monooxygenase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] D LYSHEL_11580 rapK; pteridine-dependent deoxygenase like protein K18240 xanB2; chorismate lyase / 3-hydroxybenzoate synthase [EC:4.1.3.40 4.1.3.45] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism [PATH:lhx00410] D LYSHEL_23900 panD; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] D LYSHEL_23890 panC; pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D LYSHEL_02240 fadB_1; 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] C 00430 Taurine and hypotaurine metabolism [PATH:lhx00430] D LYSHEL_20530 ggt; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D LYSHEL_28590 alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D LYSHEL_30200 glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] C 00440 Phosphonate and phosphinate metabolism C 00450 Selenocompound metabolism [PATH:lhx00450] D LYSHEL_18240 metB_2; cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D LYSHEL_30240 metH2; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D LYSHEL_30230 metH1; 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D LYSHEL_08840 metB_1; cystathionine gamma-synthase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1] D LYSHEL_18860 nifS; cysteine desulfurase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D LYSHEL_13000 pyridine nucleotide-disulfide oxidoreductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D LYSHEL_28600 trxB; thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D LYSHEL_18760 nodQ; adenylyl-sulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D LYSHEL_18750 cysD; sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D LYSHEL_24000 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:lhx00460] D LYSHEL_30590 beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] D LYSHEL_20530 ggt; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D LYSHEL_05360 aspG; asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D LYSHEL_05950 ansA; isoaspartyl peptidase/L-asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D LYSHEL_08200 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:lhx00470] D LYSHEL_29860 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D LYSHEL_07940 ddlB; D-alanine--D-alanine ligase B K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D LYSHEL_10880 hypothetical protein K26272 dgcN; D-glutamate N-acetyltransferase [EC:2.3.1.312] D LYSHEL_10850 dipeptide epimerase K19802 ycjG; L-Ala-D/L-Glu epimerase / N-acetyl-D-glutamate racemase [EC:5.1.1.20 5.1.1.25] D LYSHEL_22630 tcbD; dipeptide epimerase K19802 ycjG; L-Ala-D/L-Glu epimerase / N-acetyl-D-glutamate racemase [EC:5.1.1.20 5.1.1.25] D LYSHEL_11090 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D LYSHEL_19030 lysA; aspartate kinase K12526 lysAC; bifunctional diaminopimelate decarboxylase / aspartate kinase [EC:4.1.1.20 2.7.2.4] D LYSHEL_03820 dadA; D-amino-acid dehydrogenase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] C 00480 Glutathione metabolism [PATH:lhx00480] D LYSHEL_20530 ggt; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D LYSHEL_14490 gsh1; glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D LYSHEL_06250 gshB; glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3] D LYSHEL_08440 pepA; putative cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D LYSHEL_10030 cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D LYSHEL_31090 gst_4; glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D LYSHEL_04620 gst_1; glutathione S-transferase GST-4.5 K00799 GST; glutathione S-transferase [EC:2.5.1.18] D LYSHEL_05650 gst_2; glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D LYSHEL_06700 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D LYSHEL_24700 gst_3; glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D LYSHEL_26010 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D LYSHEL_12620 icd_2; isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D LYSHEL_22790 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D LYSHEL_24320 gpo; glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9] D LYSHEL_30480 peroxiredoxin K24138 prx3; glutaredoxin/glutathione-dependent peroxiredoxin [EC:1.11.1.25 1.11.1.27] D LYSHEL_29620 amino acid decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D LYSHEL_09840 speE1; polyamine aminopropyltransferase 1 K00797 speE; spermidine synthase [EC:2.5.1.16] D LYSHEL_13920 speE; polyamine aminopropyltransferase K00797 speE; spermidine synthase [EC:2.5.1.16] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation C 00540 Lipopolysaccharide biosynthesis [PATH:lhx00540] D LYSHEL_21240 lpxA; acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D LYSHEL_07900 lpxC; UDP-3-O-acyl-N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D LYSHEL_21260 lpxD; UDP-3-O-acylglucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D LYSHEL_04420 lpxH; UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D LYSHEL_21230 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D LYSHEL_25330 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D LYSHEL_18620 kpsF; arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D LYSHEL_03760 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D LYSHEL_18610 haloacid dehalogenase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D LYSHEL_25340 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D LYSHEL_16730 kdtA; 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D LYSHEL_10650 htrB_1; lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D LYSHEL_16720 htrB_2; lipid A biosynthesis lauroyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D LYSHEL_30890 eptA; phosphoethanolamine transferase EptA K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43] D LYSHEL_02540 kdkA; 3-deoxy-D-manno-octulosonic acid kinase K11211 kdkA; 3-deoxy-D-manno-octulosonic acid kinase [EC:2.7.1.166] D LYSHEL_08790 gmhA; phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D LYSHEL_08770 hypothetical protein K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D LYSHEL_08800 dehydrogenase K07031 hddA; D-glycero-alpha-D-manno-heptose-7-phosphate kinase [EC:2.7.1.168] D LYSHEL_08780 hddC; D-glycero-D-manno-heptose 1-phosphate guanosyltransferase K15669 hddC; D-glycero-alpha-D-manno-heptose 1-phosphate guanylyltransferase [EC:2.7.7.71] C 00542 O-Antigen repeat unit biosynthesis C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:lhx00541] D LYSHEL_28050 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D LYSHEL_06580 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D LYSHEL_13750 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D LYSHEL_30280 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D LYSHEL_11830 wbnF; nucleotide sugar epimerase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] D LYSHEL_19140 rmlA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D LYSHEL_19130 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D LYSHEL_19150 rmlC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D LYSHEL_19160 rmlD; NAD(P)-dependent oxidoreductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D LYSHEL_08670 xanB; xanthan biosynthesis protein XanB K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D LYSHEL_07680 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D LYSHEL_07690 wcaG; GDP-L-fucose synthase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D LYSHEL_15910 glmU; bifunctional protein GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D LYSHEL_25730 wbpA; UDP-N-acetyl-d-glucosamine 6-dehydrogenase WbpA K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-] C 00550 Peptidoglycan biosynthesis [PATH:lhx00550] D LYSHEL_18640 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D LYSHEL_23750 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D LYSHEL_07950 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D LYSHEL_19050 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K23169 murD2; UDP-N-acetylmuramoyl-L-alanine---L-glutamate ligase [EC:6.3.2.53] D LYSHEL_19040 hypothetical protein K23170 murL; UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L-glutamate epimerase [EC:5.1.1.23] D LYSHEL_08000 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D LYSHEL_07940 ddlB; D-alanine--D-alanine ligase B K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D LYSHEL_07990 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D LYSHEL_21310 uppS; ditrans,polycis-undecaprenyl-diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D LYSHEL_13470 uppP; undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D LYSHEL_02910 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D LYSHEL_07980 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D LYSHEL_07960 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D LYSHEL_18140 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D LYSHEL_17310 mrcA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D LYSHEL_06310 ponB; penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4] D LYSHEL_30490 pbpC; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D LYSHEL_10280 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D LYSHEL_08010 ftsI; penicillin-binding protein 3 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D LYSHEL_10240 dacC; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D LYSHEL_03200 peptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] C 00552 Teichoic acid biosynthesis [PATH:lhx00552] D LYSHEL_13470 uppP; undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D LYSHEL_02910 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D LYSHEL_06410 glycosyl transferase family 1 K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:lhx00730] D LYSHEL_16810 thiC; phosphomethylpyrimidine synthase K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17] D LYSHEL_23790 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] D LYSHEL_19240 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D LYSHEL_17680 thiG; thiazole synthase K03149 thiG; thiazole synthase [EC:2.8.1.10] D LYSHEL_17000 thiE; thiamine-phosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D LYSHEL_08100 thiL; thiamine-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16] D LYSHEL_14740 rsgA; putative ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D LYSHEL_03920 phoA; alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D LYSHEL_16920 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:lhx00740] D LYSHEL_08130 ribA; 3,4-dihydroxy-2-butanone-4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D LYSHEL_08160 ribD; riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D LYSHEL_10020 hydrolase K20862 yigB; FMN hydrolase / 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.102 3.1.3.104] D LYSHEL_08120 ribH; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D LYSHEL_08140 ribE; riboflavin synthase subunit alpha K00793 ribE; riboflavin synthase [EC:2.5.1.9] D LYSHEL_23290 ribF; riboflavin biosynthesis protein K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] D LYSHEL_06990 hypothetical protein K09474 phoN; acid phosphatase (class A) [EC:3.1.3.2] D LYSHEL_05530 DNA mismatch repair protein MutT K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] C 00750 Vitamin B6 metabolism [PATH:lhx00750] D LYSHEL_18370 pdxH; pyridoxine/pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5] D LYSHEL_27470 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D LYSHEL_05800 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262] D LYSHEL_12310 pdxJ; pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2] C 00760 Nicotinate and nicotinamide metabolism [PATH:lhx00760] D LYSHEL_19940 nadC; nicotinate-nucleotide diphosphorylase (carboxylating) K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] D LYSHEL_30170 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D LYSHEL_03690 surE; 5'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D LYSHEL_20960 hypothetical protein K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D LYSHEL_17580 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D LYSHEL_16330 nudC; NADH pyrophosphatase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22] D LYSHEL_07580 nadE; NAD+ synthase K01916 nadE; NAD+ synthase [EC:6.3.1.5] D LYSHEL_23680 competence damage-inducible protein A K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42] D LYSHEL_30180 nadK; NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] D LYSHEL_05440 NAD(P)(+) transhydrogenase K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1] D LYSHEL_05490 putative NAD(P) transhydrogenase, alpha1 subunit PntAA K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1] D LYSHEL_05430 NAD(P) transhydrogenase subunit beta K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1] D LYSHEL_21700 gabD; NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00770 Pantothenate and CoA biosynthesis [PATH:lhx00770] D LYSHEL_23880 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D LYSHEL_23890 panC; pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D LYSHEL_09430 coaX; type III pantothenate kinase K03525 coaX; type III pantothenate kinase [EC:2.7.1.33] D LYSHEL_14000 hypothetical protein K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D LYSHEL_17580 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D LYSHEL_20500 coaD; phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D LYSHEL_07850 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D LYSHEL_11790 hetI; 4'-phosphopantetheinyl transferase K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-] D LYSHEL_17750 ilvE; branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D LYSHEL_23900 panD; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] C 00780 Biotin metabolism [PATH:lhx00780] D LYSHEL_12760 bioC; malonyl-[acyl-carrier protein] O-methyltransferase K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197] D LYSHEL_11440 fabF_2; beta-ketoacyl-[acyl-carrier-protein] synthase II K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D LYSHEL_02310 fabF_1; 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D LYSHEL_29970 short-chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D LYSHEL_02330 fabG_1; beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D LYSHEL_11490 fabG_3; 3-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D LYSHEL_21250 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D LYSHEL_02640 enoyl-[acyl-carrier-protein] reductase [NADH] K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D LYSHEL_12750 bioH_1; pimeloyl-[acyl-carrier protein] methyl ester esterase K02170 bioH; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85] D LYSHEL_12730 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D LYSHEL_17550 bioA; adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D LYSHEL_16060 bioD; ATP-dependent dethiobiotin synthetase BioD K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3] D LYSHEL_12720 bioB; biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6] D LYSHEL_09440 birA; bifunctional ligase/repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism [PATH:lhx00785] D LYSHEL_10210 lipB; octanoyltransferase K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181] D LYSHEL_10200 lipA; lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8] D LYSHEL_30420 ldp; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D LYSHEL_15800 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D LYSHEL_14830 aceE; pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D LYSHEL_15790 phdB; acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D LYSHEL_30400 sucA; 2-oxoglutarate dehydrogenase subunit E1 K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D LYSHEL_30410 sucB; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D LYSHEL_09310 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D LYSHEL_09320 pdhB_1; 2-oxoisovalerate dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D LYSHEL_24720 MFS transporter K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4] D LYSHEL_09330 pdhB_2; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D LYSHEL_19080 gcvP; glycine dehydrogenase (decarboxylating) K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D LYSHEL_17930 gcvT; aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D LYSHEL_17940 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein C 00790 Folate biosynthesis [PATH:lhx00790] D LYSHEL_12990 folE; GTP cyclohydrolase 1 K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D LYSHEL_01350 folE2; GTP cyclohydrolase FolE2 K09007 folE2; GTP cyclohydrolase IB [EC:3.5.4.16] D LYSHEL_03920 phoA; alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D LYSHEL_26350 alkaline phosphatase K01113 phoD; alkaline phosphatase D [EC:3.1.3.1] D LYSHEL_14370 folB; 7,8-dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81] D LYSHEL_02760 hypothetical protein K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D LYSHEL_14380 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D LYSHEL_23870 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D LYSHEL_03590 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D LYSHEL_05840 folA; dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D LYSHEL_04460 folC; bifunctional folylpolyglutamate synthase/dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D LYSHEL_08130 ribA; 3,4-dihydroxy-2-butanone-4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D LYSHEL_02300 trpE_1; hypothetical protein K25578 pabB; 4-amino-4-deoxychorismate synthase (2-amino-4-deoxychorismate-forming) component I [EC:2.6.1.123] D LYSHEL_02290 pabC; aminodeoxychorismate lyase K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38] D LYSHEL_16220 ptps; 6-carboxy-5,6,7,8-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D LYSHEL_27840 phhB; putative pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D LYSHEL_12800 phhA; phenylalanine 4-monooxygenase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] D LYSHEL_14390 ptr1; pteridine reductase K03793 PTR1; pteridine reductase [EC:1.5.1.33] D LYSHEL_07320 queE; 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D LYSHEL_07310 queC; 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D LYSHEL_12650 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D LYSHEL_02520 moaA; GTP 3',8-cyclase K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D LYSHEL_02510 moaC; cyclic pyranopterin monophosphate synthase accessory protein K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D LYSHEL_02490 moaE; molybdopterin-converting factor chain 2 K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D LYSHEL_05280 moaB; molybdenum cofactor biosynthesis protein B K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75] D LYSHEL_28190 moeA; molybdopterin molybdenumtransferase MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D LYSHEL_28180 mobA; molybdenum cofactor guanylyltransferase K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77] C 00670 One carbon pool by folate [PATH:lhx00670] D LYSHEL_05840 folA; dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D LYSHEL_28250 folD; bifunctional protein FolD K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D LYSHEL_08200 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D LYSHEL_18670 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D LYSHEL_16420 purH; bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D LYSHEL_10580 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D LYSHEL_17930 gcvT; aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D LYSHEL_30240 metH2; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D LYSHEL_30230 metH1; 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D LYSHEL_05870 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] D LYSHEL_17780 metF; methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D LYSHEL_17090 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:lhx00860] D LYSHEL_04410 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D LYSHEL_05250 hemA; glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70] D LYSHEL_16990 hemL; glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D LYSHEL_11620 hemB; delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D LYSHEL_10980 hemC; porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D LYSHEL_11290 hemD; uroporphyrinogen III methyltransferase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75] D LYSHEL_18330 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37] D LYSHEL_11320 hemF; oxygen-dependent coproporphyrinogen-III oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3] D LYSHEL_07290 coproporphyrinogen-III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3] D LYSHEL_03940 membrane protein K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-] D LYSHEL_12070 hemH; ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9] D LYSHEL_11300 uroporphyrin-III C-methyltransferase K02496 hemX; uroporphyrin-III C-methyltransferase [EC:2.1.1.107] D LYSHEL_14320 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D LYSHEL_14310 cytochrome oxidase assembly protein K02259 COX15; heme a synthase [EC:1.17.99.9] D LYSHEL_05750 ATP--cobalamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D LYSHEL_16260 bfr; bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:lhx00130] D LYSHEL_11580 rapK; pteridine-dependent deoxygenase like protein K18240 xanB2; chorismate lyase / 3-hydroxybenzoate synthase [EC:4.1.3.40 4.1.3.45] D LYSHEL_12700 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D LYSHEL_01380 ubiG; ubiquinone biosynthesis O-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64] D LYSHEL_05730 ubiH; 2-octaprenyl-6-methoxyphenyl hydroxylase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-] D LYSHEL_11190 ubiE; ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201] D LYSHEL_05720 visC; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase K03184 ubiF; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60] D LYSHEL_08980 coq7; 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase K06134 COQ7; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60] D LYSHEL_13420 hypothetical protein K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28] D LYSHEL_05340 NAD(P)H dehydrogenase (quinone) K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D LYSHEL_09260 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:lhx00900] D LYSHEL_19240 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D LYSHEL_21290 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] D LYSHEL_03730 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60] D LYSHEL_05220 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D LYSHEL_03720 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12] D LYSHEL_01960 ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] D LYSHEL_23320 ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] D LYSHEL_00790 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LYSHEL_13090 yfcY; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LYSHEL_21120 ispA; farnesyl-diphosphate synthase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] D LYSHEL_19070 ispB; octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D LYSHEL_21310 uppS; ditrans,polycis-undecaprenyl-diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation C 00907 Pinene, camphor and geraniol degradation [PATH:lhx00907] D LYSHEL_02240 fadB_1; 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D LYSHEL_16960 short chain dehydrogenase K13775 atuG; citronellol/citronellal dehydrogenase D LYSHEL_00900 mvaB; hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D LYSHEL_28080 fadA; acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D LYSHEL_17440 tktA; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis [PATH:lhx00523] D LYSHEL_19140 rmlA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D LYSHEL_19130 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D LYSHEL_19150 rmlC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D LYSHEL_19160 rmlD; NAD(P)-dependent oxidoreductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides C 01055 Biosynthesis of vancomycin group antibiotics D LYSHEL_19130 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids [PATH:lhx00946] D LYSHEL_30590 beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis D LYSHEL_21450 acyII; penicillin acylase K01434 pac; penicillin G amidase [EC:3.5.1.11] C 00332 Carbapenem biosynthesis C 00261 Monobactam biosynthesis [PATH:lhx00261] D LYSHEL_18760 nodQ; adenylyl-sulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D LYSHEL_18750 cysD; sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D LYSHEL_19030 lysA; aspartate kinase K12526 lysAC; bifunctional diaminopimelate decarboxylase / aspartate kinase [EC:4.1.1.20 2.7.2.4] D LYSHEL_24180 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D LYSHEL_23830 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D LYSHEL_28890 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:lhx00521] D LYSHEL_22820 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D LYSHEL_14020 hypothetical protein K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D LYSHEL_20630 suhB; inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D LYSHEL_19140 rmlA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D LYSHEL_19130 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D LYSHEL_19150 rmlC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D LYSHEL_19160 rmlD; NAD(P)-dependent oxidoreductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 00524 Neomycin, kanamycin and gentamicin biosynthesis D LYSHEL_22820 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] C 00525 Acarbose and validamycin biosynthesis [PATH:lhx00525] D LYSHEL_19140 rmlA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D LYSHEL_19130 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00401 Novobiocin biosynthesis [PATH:lhx00401] D LYSHEL_04670 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D LYSHEL_01070 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D LYSHEL_27490 hisC2; histidinol-phosphate aminotransferase 2 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis D LYSHEL_09130 trpE_2; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D LYSHEL_09060 trpG; glutamine amidotransferase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] C 00333 Prodigiosin biosynthesis D LYSHEL_02340 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D LYSHEL_29970 short-chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D LYSHEL_02330 fabG_1; beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D LYSHEL_11490 fabG_3; 3-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D LYSHEL_02640 enoyl-[acyl-carrier-protein] reductase [NADH] K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D LYSHEL_02320 acpP; acyl carrier protein K02078 acpP; acyl carrier protein D LYSHEL_11560 acpC; acyl carrier protein K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites [PATH:lhx00999] D LYSHEL_17800 metK; S-adenosylmethionine synthase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D LYSHEL_11640 aroE; shikimate dehydrogenase (NADP(+)) K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D LYSHEL_30590 beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] C 00997 Biosynthesis of various other secondary metabolites B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation [PATH:lhx00362] D LYSHEL_28080 fadA; acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D LYSHEL_29980 hpaE; 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase K10217 dmpC; aminomuconate-semialdehyde/2-hydroxymuconate-6-semialdehyde dehydrogenase [EC:1.2.1.32 1.2.1.85] D LYSHEL_04330 pcaH; protocatechuate 3,4-dioxygenase subunit beta K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3] D LYSHEL_02240 fadB_1; 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D LYSHEL_28090 fadB_2; 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D LYSHEL_24680 gcdH; glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D LYSHEL_00790 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LYSHEL_13090 yfcY; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00627 Aminobenzoate degradation [PATH:lhx00627] D LYSHEL_04740 gatAX; amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D LYSHEL_05310 hypothetical protein K01512 acyP; acylphosphatase [EC:3.6.1.7] C 00364 Fluorobenzoate degradation [PATH:lhx00364] D LYSHEL_24060 carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00625 Chloroalkane and chloroalkene degradation [PATH:lhx00625] D LYSHEL_14510 S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:lhx00361] D LYSHEL_24060 carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00623 Toluene degradation [PATH:lhx00623] D LYSHEL_24060 carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00622 Xylene degradation D LYSHEL_29980 hpaE; 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase K10217 dmpC; aminomuconate-semialdehyde/2-hydroxymuconate-6-semialdehyde dehydrogenase [EC:1.2.1.32 1.2.1.85] C 00633 Nitrotoluene degradation C 00642 Ethylbenzene degradation D LYSHEL_28080 fadA; acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 00643 Styrene degradation [PATH:lhx00643] D LYSHEL_09250 hmgA; homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5] D LYSHEL_08900 uptB; maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2] D LYSHEL_08910 uptA; fumarylacetoacetate hydrolase K16171 faaH; fumarylacetoacetate (FAA) hydrolase [EC:3.7.1.2] D LYSHEL_04740 gatAX; amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] C 00791 Atrazine degradation C 00930 Caprolactam degradation [PATH:lhx00930] D LYSHEL_02240 fadB_1; 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] C 00363 Bisphenol degradation D LYSHEL_29750 2,4'-dihydroxyacetophenone dioxygenase K05913 dad; 2,4'-dihydroxyacetophenone dioxygenase [EC:1.13.11.41] D LYSHEL_00700 hypothetical protein K05913 dad; 2,4'-dihydroxyacetophenone dioxygenase [EC:1.13.11.41] C 00621 Dioxin degradation C 00626 Naphthalene degradation [PATH:lhx00626] D LYSHEL_14510 S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] C 00624 Polycyclic aromatic hydrocarbon degradation D LYSHEL_04330 pcaH; protocatechuate 3,4-dioxygenase subunit beta K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3] C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:lhx03020] D LYSHEL_05100 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D LYSHEL_05090 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D LYSHEL_04790 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D LYSHEL_17230 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] C 03022 Basal transcription factors C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:lhx03010] D LYSHEL_27990 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D LYSHEL_21390 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D LYSHEL_04970 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D LYSHEL_04800 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D LYSHEL_04860 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D LYSHEL_29910 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D LYSHEL_05070 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D LYSHEL_04890 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D LYSHEL_08920 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D LYSHEL_05040 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D LYSHEL_04810 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D LYSHEL_05080 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D LYSHEL_04820 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D LYSHEL_04900 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D LYSHEL_24860 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D LYSHEL_23610 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D LYSHEL_04940 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D LYSHEL_29900 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D LYSHEL_04990 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D LYSHEL_23270 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D LYSHEL_14350 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D LYSHEL_05130 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D LYSHEL_05000 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D LYSHEL_05030 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D LYSHEL_05020 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D LYSHEL_04910 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D LYSHEL_04880 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D LYSHEL_05110 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D LYSHEL_29890 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D LYSHEL_05120 hypothetical protein K02864 RP-L10; large subunit ribosomal protein L10 D LYSHEL_05140 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D LYSHEL_08930 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D LYSHEL_04930 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D LYSHEL_04840 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D LYSHEL_04960 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D LYSHEL_04780 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D LYSHEL_04870 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D LYSHEL_23640 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D LYSHEL_20150 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D LYSHEL_23240 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D LYSHEL_04980 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D LYSHEL_05010 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D LYSHEL_04920 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D LYSHEL_05200 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25 D LYSHEL_23250 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D LYSHEL_11860 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D LYSHEL_04950 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D LYSHEL_04850 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D LYSHEL_17280 rpmE2; 50S ribosomal protein L31 type B K02909 RP-L31; large subunit ribosomal protein L31 D LYSHEL_02360 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D LYSHEL_11870 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D LYSHEL_12420 hypothetical protein K02914 RP-L34; large subunit ribosomal protein L34 D LYSHEL_20140 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D LYSHEL_r00010 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D LYSHEL_r00040 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D LYSHEL_r00020 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D LYSHEL_r00050 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D LYSHEL_r00030 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D LYSHEL_r00060 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:lhx00970] D LYSHEL_t00250 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D LYSHEL_t00280 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D LYSHEL_t00520 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D LYSHEL_t00020 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D LYSHEL_t00400 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D LYSHEL_t00230 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D LYSHEL_t00100 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D LYSHEL_t00410 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D LYSHEL_t00320 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D LYSHEL_t00050 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D LYSHEL_t00470 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D LYSHEL_t00190 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D LYSHEL_t00170 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D LYSHEL_t00510 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D LYSHEL_t00420 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D LYSHEL_t00460 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D LYSHEL_t00300 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D LYSHEL_t00150 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D LYSHEL_t00090 tRNA-His K14226 tRNA-His; tRNA His D LYSHEL_t00260 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D LYSHEL_t00290 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D LYSHEL_t00360 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D LYSHEL_t00440 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D LYSHEL_t00480 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D LYSHEL_t00070 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D LYSHEL_t00540 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D LYSHEL_t00180 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D LYSHEL_t00080 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D LYSHEL_t00270 tRNA-Met K14230 tRNA-Met; tRNA Met D LYSHEL_t00450 tRNA-Met K14230 tRNA-Met; tRNA Met D LYSHEL_t00210 tRNA-Met K14230 tRNA-Met; tRNA Met D LYSHEL_t00350 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D LYSHEL_t00010 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D LYSHEL_t00110 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D LYSHEL_t00340 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D LYSHEL_t00040 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D LYSHEL_t00390 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D LYSHEL_t00030 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D LYSHEL_t00500 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D LYSHEL_t00140 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D LYSHEL_t00200 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D LYSHEL_t00380 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D LYSHEL_t00130 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D LYSHEL_t00160 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D LYSHEL_t00060 tRNA-Val K14237 tRNA-Val; tRNA Val D LYSHEL_t00490 tRNA-Val K14237 tRNA-Val; tRNA Val D LYSHEL_t00330 tRNA-Val K14237 tRNA-Val; tRNA Val D LYSHEL_04410 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D LYSHEL_05670 glnS; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D LYSHEL_23720 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D LYSHEL_07470 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D LYSHEL_29930 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D LYSHEL_12140 glyQ; glycine--tRNA ligase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D LYSHEL_12150 glyS; glycine--tRNA ligase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D LYSHEL_20120 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D LYSHEL_27520 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D LYSHEL_01280 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D LYSHEL_24000 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D LYSHEL_10580 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D LYSHEL_08460 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D LYSHEL_20930 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D LYSHEL_23300 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D LYSHEL_28770 lysS_1; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D LYSHEL_13970 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D LYSHEL_08540 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D LYSHEL_01120 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D LYSHEL_20160 pheS; phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D LYSHEL_20170 pheT; phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D LYSHEL_14100 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D LYSHEL_09370 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:lhx03060] D LYSHEL_04830 secY; protein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D LYSHEL_05160 hypothetical protein K03073 secE; preprotein translocase subunit SecE D LYSHEL_25070 hypothetical protein K03075 secG; preprotein translocase subunit SecG D LYSHEL_20610 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D LYSHEL_20620 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D LYSHEL_20600 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D LYSHEL_12440 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D LYSHEL_07870 secA; protein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D LYSHEL_11250 secB; protein-export protein SecB K03071 secB; preprotein translocase subunit SecB D LYSHEL_23600 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D LYSHEL_20480 hypothetical protein K03110 ftsY; fused signal recognition particle receptor D LYSHEL_12090 hypothetical protein K03116 tatA; sec-independent protein translocase protein TatA D LYSHEL_12100 hypothetical protein K03117 tatB; sec-independent protein translocase protein TatB D LYSHEL_12110 tatC; sec-independent protein translocase protein TatC K03118 tatC; sec-independent protein translocase protein TatC D LYSHEL_02190 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D LYSHEL_23310 lspA; lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:lhx04122] D LYSHEL_23190 sseA; thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D LYSHEL_28680 mnmA; tRNA-specific 2-thiouridylase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D LYSHEL_02490 moaE; molybdopterin-converting factor chain 2 K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D LYSHEL_02520 moaA; GTP 3',8-cyclase K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D LYSHEL_02500 moaD; molybdopterin synthase sulfur carrier subunit K03636 moaD; sulfur-carrier protein D LYSHEL_02510 moaC; cyclic pyranopterin monophosphate synthase accessory protein K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D LYSHEL_05280 moaB; molybdenum cofactor biosynthesis protein B K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75] D LYSHEL_17690 sulfur carrier protein ThiS K03154 thiS; sulfur carrier protein C 03050 Proteasome C 03018 RNA degradation [PATH:lhx03018] D LYSHEL_16240 rppH; RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D LYSHEL_27820 hypothetical protein K08300 rne; ribonuclease E [EC:3.1.26.12] D LYSHEL_13210 rhlB; ATP-dependent RNA helicase RhlB K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7] D LYSHEL_03750 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D LYSHEL_24870 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D LYSHEL_31520 rhlE; RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D LYSHEL_22960 vacB; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D LYSHEL_04180 deaD; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D LYSHEL_06370 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D LYSHEL_13230 hypothetical protein K03628 rho; transcription termination factor Rho D LYSHEL_28930 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D LYSHEL_16560 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D LYSHEL_03540 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein D LYSHEL_02840 ppk; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D LYSHEL_29430 polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D LYSHEL_05300 transcriptional regulator K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D LYSHEL_23860 pcnB; poly(A) polymerase I K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] B B 09124 Replication and repair C 03030 DNA replication [PATH:lhx03030] D LYSHEL_02590 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D LYSHEL_21190 dnaE1; DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D LYSHEL_02480 hypothetical protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D LYSHEL_02260 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D LYSHEL_20950 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D LYSHEL_08450 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D LYSHEL_12400 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D LYSHEL_29880 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D LYSHEL_21540 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D LYSHEL_14330 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D LYSHEL_19120 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D LYSHEL_02600 rnhA; ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D LYSHEL_21220 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D LYSHEL_11340 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D LYSHEL_30550 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:lhx03410] D LYSHEL_23120 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D LYSHEL_13170 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D LYSHEL_20460 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D LYSHEL_15330 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] D LYSHEL_11910 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D LYSHEL_15740 endonuclease K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] D LYSHEL_03230 DNA-3-methyladenine glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D LYSHEL_20270 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D LYSHEL_31550 hypothetical protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D LYSHEL_11750 xthA1; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D LYSHEL_14050 exoA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D LYSHEL_11340 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D LYSHEL_28820 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D LYSHEL_30550 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:lhx03420] D LYSHEL_02980 mfd; transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D LYSHEL_03480 uvrA2; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D LYSHEL_23230 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A D LYSHEL_20100 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B D LYSHEL_25360 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C D LYSHEL_11370 uvrD; DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D LYSHEL_11340 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D LYSHEL_30550 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03430 Mismatch repair [PATH:lhx03430] D LYSHEL_23660 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D LYSHEL_23960 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D LYSHEL_11370 uvrD; DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D LYSHEL_30110 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] D LYSHEL_01970 xseA; exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D LYSHEL_21130 xseB; exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D LYSHEL_28820 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D LYSHEL_19120 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D LYSHEL_21190 dnaE1; DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D LYSHEL_12400 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D LYSHEL_02480 hypothetical protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D LYSHEL_20950 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D LYSHEL_02260 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D LYSHEL_02590 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D LYSHEL_08450 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D LYSHEL_30550 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03440 Homologous recombination [PATH:lhx03440] D LYSHEL_28820 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D LYSHEL_19120 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D LYSHEL_12390 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF D LYSHEL_02150 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D LYSHEL_02460 recR; recombination protein RecR K06187 recR; recombination protein RecR D LYSHEL_23700 recA; protein RecA K03553 recA; recombination protein RecA D LYSHEL_11340 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D LYSHEL_07420 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D LYSHEL_07400 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D LYSHEL_07430 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D LYSHEL_17260 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D LYSHEL_12950 recB; RecBCD enzyme subunit RecB K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] D LYSHEL_12940 recC; RecBCD enzyme subunit RecC K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] D LYSHEL_12960 recD; RecBCD enzyme subunit RecD K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D LYSHEL_21190 dnaE1; DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D LYSHEL_12400 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D LYSHEL_02480 hypothetical protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D LYSHEL_20950 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D LYSHEL_02260 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D LYSHEL_02590 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D LYSHEL_08450 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D LYSHEL_10400 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] C 03450 Non-homologous end-joining [PATH:lhx03450] D LYSHEL_16100 ku; non-homologous end joining protein Ku K10979 ku; DNA end-binding protein Ku D LYSHEL_25690 lig3; ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus and Lyssavirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:lhx02010] D LYSHEL_17470 modA; molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein D LYSHEL_17460 modB; molybdate ABC transporter permease K02018 modB; molybdate transport system permease protein D LYSHEL_17450 modC; molybdate-transporting ATPase K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D LYSHEL_30580 ugpC; sugar ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D LYSHEL_12900 yrbC; organic solvent ABC transporter K07323 mlaC; phospholipid transport system substrate-binding protein D LYSHEL_08490 ABC transporter substrate-binding protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D LYSHEL_12910 yrbD; outer membrane lipid asymmetry maintenance protein MlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D LYSHEL_08510 yrbE_1; ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D LYSHEL_12920 yrbE_2; ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D LYSHEL_12890 hypothetical protein K07122 mlaB; phospholipid transport system transporter-binding protein D LYSHEL_08500 yrbF_1; ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D LYSHEL_12930 yrbF_2; ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D LYSHEL_23100 phoX; phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein D LYSHEL_23090 pstC; phosphate transport system permease protein K02037 pstC; phosphate transport system permease protein D LYSHEL_23080 pstA; phosphate transport system permease protein PstA K02038 pstA; phosphate transport system permease protein D LYSHEL_23070 pstB; phosphate import ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D LYSHEL_08830 transport permease protein K09690 wzm; homopolymeric O-antigen transport system permease protein D LYSHEL_08820 wzt; ABC transporter ATP-binding protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14] D LYSHEL_12470 natB; sodium ABC transporter permease K09696 natB; sodium transport system permease protein D LYSHEL_12480 natA; sodium ABC transporter ATP-binding protein K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4] D LYSHEL_20910 hypothetical protein K20461 nukG; lantibiotic transport system permease protein D LYSHEL_20920 ABC transporter ATP-binding protein K20459 nukF; lantibiotic transport system ATP-binding protein D LYSHEL_25270 lolC; cell division protein FtsX K09808 lolC_E; lipoprotein-releasing system permease protein D LYSHEL_25280 lolD; lipoprotein-releasing system ATP-binding protein LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D LYSHEL_30800 hypothetical protein K02196 ccmD; heme exporter protein D D LYSHEL_30790 cycZ; heme ABC transporter permease K02195 ccmC; heme exporter protein C D LYSHEL_30780 cycW; heme exporter protein B K02194 ccmB; heme exporter protein B D LYSHEL_30770 ccmA; cytochrome c biogenesis ATP-binding export protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D LYSHEL_08430 LPS export ABC transporter permease LptF K07091 lptF; lipopolysaccharide export system permease protein D LYSHEL_08420 LPS export ABC transporter permease LptG K11720 lptG; lipopolysaccharide export system permease protein D LYSHEL_18580 yhbG; ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D LYSHEL_13190 ftsX; cell division protein FtsX K09811 ftsX; cell division transport system permease protein D LYSHEL_13200 ftsE; ABC transporter ATP-binding protein K09812 ftsE; cell division transport system ATP-binding protein D LYSHEL_25320 msbA_2; lipid A export ATP-binding/permease protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D LYSHEL_15610 metal ABC transporter permease K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter C 02060 Phosphotransferase system (PTS) [PATH:lhx02060] D LYSHEL_18500 ptsI; phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D LYSHEL_18510 ptsH; phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr D LYSHEL_18520 hypothetical protein K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D LYSHEL_18550 ptsN; PTS fructose transporter subunit IIA K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] C 03070 Bacterial secretion system [PATH:lhx03070] D LYSHEL_16740 tolC; membrane protein K12340 tolC; outer membrane protein D LYSHEL_08250 xpsD; type II secretion system protein D K02453 gspD; general secretion pathway protein D D LYSHEL_08340 xpsF; type II secretion system protein F K02455 gspF; general secretion pathway protein F D LYSHEL_00240 hypothetical protein K02456 gspG; general secretion pathway protein G D LYSHEL_08330 xpsG; type II secretion system protein G K02456 gspG; general secretion pathway protein G D LYSHEL_08320 xpsH; type II secretion system protein H K02457 gspH; general secretion pathway protein H D LYSHEL_08310 hypothetical protein K02458 gspI; general secretion pathway protein I D LYSHEL_08300 xpsJ; type II secretion system protein J K02459 gspJ; general secretion pathway protein J D LYSHEL_08290 pefK; type II secretion system protein K K02460 gspK; general secretion pathway protein K D LYSHEL_08280 pefL; type II secretion system protein L K02461 gspL; general secretion pathway protein L D LYSHEL_08270 xpsM; protein XpsM K02462 gspM; general secretion pathway protein M D LYSHEL_08350 xpsE; type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D LYSHEL_20610 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D LYSHEL_20620 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D LYSHEL_05160 hypothetical protein K03073 secE; preprotein translocase subunit SecE D LYSHEL_25070 hypothetical protein K03075 secG; preprotein translocase subunit SecG D LYSHEL_04830 secY; protein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D LYSHEL_20600 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D LYSHEL_12440 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D LYSHEL_07870 secA; protein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D LYSHEL_20480 hypothetical protein K03110 ftsY; fused signal recognition particle receptor D LYSHEL_11250 secB; protein-export protein SecB K03071 secB; preprotein translocase subunit SecB D LYSHEL_23600 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D LYSHEL_12090 hypothetical protein K03116 tatA; sec-independent protein translocase protein TatA D LYSHEL_12100 hypothetical protein K03117 tatB; sec-independent protein translocase protein TatB D LYSHEL_12110 tatC; sec-independent protein translocase protein TatC K03118 tatC; sec-independent protein translocase protein TatC D LYSHEL_20850 hypothetical protein K11912 ppkA; serine/threonine-protein kinase PpkA [EC:2.7.11.1] B B 09132 Signal transduction C 02020 Two-component system [PATH:lhx02020] D LYSHEL_02830 phoR; phosphate regulon sensor histidine kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D LYSHEL_02820 phoB; DNA-binding response regulator K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D LYSHEL_03920 phoA; alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D LYSHEL_26350 alkaline phosphatase K01113 phoD; alkaline phosphatase D [EC:3.1.3.1] D LYSHEL_23100 phoX; phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein D LYSHEL_08740 hypothetical protein K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D LYSHEL_09470 phoQ; two-component sensor histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D LYSHEL_09480 phoP; DNA-binding response regulator K07660 phoP; two-component system, OmpR family, response regulator PhoP D LYSHEL_06990 hypothetical protein K09474 phoN; acid phosphatase (class A) [EC:3.1.3.2] D LYSHEL_02210 mucD; peptidase S1 K04771 degP; serine protease Do [EC:3.4.21.107] D LYSHEL_09970 htrA; heat-shock protein K04771 degP; serine protease Do [EC:3.4.21.107] D LYSHEL_02930 creC; two-component sensor histidine kinase K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3] D LYSHEL_02940 creB; DNA-binding response regulator K07663 creB; two-component system, OmpR family, catabolic regulation response regulator CreB D LYSHEL_29060 copper-binding protein K07810 cusF; Cu(I)/Ag(I) efflux system periplasmic protein CusF D LYSHEL_29080 hypothetical protein K07798 cusB; membrane fusion protein, copper/silver efflux system D LYSHEL_29070 cation transporter K07787 cusA; copper/silver efflux system protein D LYSHEL_15080 hypothetical protein K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D LYSHEL_15090 kdpE_1; DNA-binding response regulator K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D LYSHEL_22690 kdpE_2; DNA-binding response regulator K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D LYSHEL_14310 cytochrome oxidase assembly protein K02259 COX15; heme a synthase [EC:1.17.99.9] D LYSHEL_12410 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D LYSHEL_01550 ddpX; D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D LYSHEL_03200 peptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D LYSHEL_10970 algZ; histidine kinase K08082 algZ; two-component system, LytTR family, sensor histidine kinase AlgZ [EC:2.7.13.3] D LYSHEL_12480 natA; sodium ABC transporter ATP-binding protein K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4] D LYSHEL_12470 natB; sodium ABC transporter permease K09696 natB; sodium transport system permease protein D LYSHEL_01530 hypothetical protein K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3] D LYSHEL_01520 DNA-binding response regulator K20264 fusR; two-component system, NarL family, response regulator FusR D LYSHEL_27810 gacA; DNA-binding response regulator K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY D LYSHEL_23730 csrA; carbon storage regulator K03563 csrA; carbon storage regulator D LYSHEL_19100 DNA-binding response regulator K07690 evgA; two-component system, NarL family, response regulator EvgA D LYSHEL_17960 bla; serine hydrolase K01467 ampC; beta-lactamase class C [EC:3.5.2.6] D LYSHEL_10050 two-component sensor histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3] D LYSHEL_10040 DNA-binding response regulator K07693 desR; two-component system, NarL family, response regulator DesR D LYSHEL_25640 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D LYSHEL_25670 pru; protein U K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D LYSHEL_25630 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D LYSHEL_25660 hypothetical protein K07346 fimC; fimbrial chaperone protein D LYSHEL_20870 outer membrane usher protein K07347 fimD; outer membrane usher protein D LYSHEL_25650 hypothetical protein K07347 fimD; outer membrane usher protein D LYSHEL_21410 glnD; bifunctional uridylyltransferase/uridylyl-removing enzyme K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59] D LYSHEL_13910 glnB; nitrogen regulatory protein P-II 1 K04751 glnB; nitrogen regulatory protein P-II 1 D LYSHEL_29300 hypothetical protein K04751 glnB; nitrogen regulatory protein P-II 1 D LYSHEL_13140 ntrB; two-component system sensor protein K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D LYSHEL_13130 ntrC_1; nitrogen regulation protein NR(I) K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG D LYSHEL_13500 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D LYSHEL_00790 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LYSHEL_13090 yfcY; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LYSHEL_07620 pilS; two-component sensor histidine kinase K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3] D LYSHEL_07630 pilR; sigma-54-dependent Fis family transcriptional regulator K02667 pilR; two-component system, NtrC family, response regulator PilR D LYSHEL_18570 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D LYSHEL_07640 pilE_1; pilin K02650 pilA; type IV pilus assembly protein PilA D LYSHEL_07650 pilE_2; pilin K02650 pilA; type IV pilus assembly protein PilA D LYSHEL_22200 pilE_3; pilin K02650 pilA; type IV pilus assembly protein PilA D LYSHEL_06210 pilJ; pilus biogenesis protein K02660 pilJ; twitching motility protein PilJ D LYSHEL_06220 pilI; pilus biogenesis protein K02659 pilI; twitching motility protein PilI D LYSHEL_06200 hypothetical protein K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator) D LYSHEL_06240 pilG; response regulator K02657 pilG; twitching motility two-component system response regulator PilG D LYSHEL_30460 pilH_3; response regulator K02658 pilH; twitching motility two-component system response regulator PilH D LYSHEL_01940 pilH_1; response regulator K02658 pilH; twitching motility two-component system response regulator PilH D LYSHEL_06230 pilH_2; response regulator K02658 pilH; twitching motility two-component system response regulator PilH D LYSHEL_06190 hypothetical protein K06597 chpB; chemosensory pili system protein ChpB (putative protein-glutamate methylesterase) D LYSHEL_06180 chemotaxis protein CheW K06598 chpC; chemosensory pili system protein ChpC D LYSHEL_28740 rpfC; sensory/regulatory protein RpfC K10715 rpfC; two-component system, sensor histidine kinase RpfC [EC:2.7.13.3] D LYSHEL_28750 rpfG; two-component system response regulator K13815 rpfG; two-component system, response regulator RpfG D LYSHEL_09000 clp; CRP-like protein Clp K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D LYSHEL_28730 rpfF; enoyl-CoA hydratase K13816 rpfF; DSF synthase D LYSHEL_19870 petA; ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D LYSHEL_19880 petB; cytochrome b K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D LYSHEL_19890 petC; cytochrome c K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit D LYSHEL_27590 cytochrome c oxidase, cbb3-type subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9] D LYSHEL_27600 cytochrome-c oxidase, cbb3-type subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II D LYSHEL_27610 hypothetical protein K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV D LYSHEL_27620 ccoP1; Cbb3-type cytochrome c oxidase subunit K00406 ccoP; cytochrome c oxidase cbb3-type subunit III D LYSHEL_10690 cydA-2; cytochrome bd oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D LYSHEL_10700 cydB; cytochrome D ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D LYSHEL_16740 tolC; membrane protein K12340 tolC; outer membrane protein D LYSHEL_23510 capsular polysaccharide biosynthesis protein K01991 wza; polysaccharide biosynthesis/export protein D LYSHEL_23400 protein-tyrosine-phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48] D LYSHEL_23420 tyrosine protein kinase K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3] C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis [PATH:lhx04148] D LYSHEL_09400 argI; arginase K01476 rocF; arginase [EC:3.5.3.1] D LYSHEL_29620 amino acid decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D LYSHEL_19870 petA; ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:lhx02024] D LYSHEL_03540 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein D LYSHEL_09130 trpE_2; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D LYSHEL_09060 trpG; glutamine amidotransferase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D LYSHEL_04760 dhs1; phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D LYSHEL_15090 kdpE_1; DNA-binding response regulator K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D LYSHEL_22690 kdpE_2; DNA-binding response regulator K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D LYSHEL_01520 DNA-binding response regulator K20264 fusR; two-component system, NarL family, response regulator FusR D LYSHEL_28730 rpfF; enoyl-CoA hydratase K13816 rpfF; DSF synthase D LYSHEL_03830 peptidase M4 K20273 zmpA; zinc metalloprotease ZmpA D LYSHEL_28720 rpfB; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D LYSHEL_28740 rpfC; sensory/regulatory protein RpfC K10715 rpfC; two-component system, sensor histidine kinase RpfC [EC:2.7.13.3] D LYSHEL_28750 rpfG; two-component system response regulator K13815 rpfG; two-component system, response regulator RpfG D LYSHEL_09000 clp; CRP-like protein Clp K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D LYSHEL_04400 Fur family transcriptional regulator K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D LYSHEL_08160 ribD; riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D LYSHEL_22490 RND transporter K18139 oprM; outer membrane protein, multidrug efflux system D LYSHEL_12440 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D LYSHEL_19700 extracellular protease K14645 K14645; serine protease [EC:3.4.21.-] D LYSHEL_05160 hypothetical protein K03073 secE; preprotein translocase subunit SecE D LYSHEL_25070 hypothetical protein K03075 secG; preprotein translocase subunit SecG D LYSHEL_04830 secY; protein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D LYSHEL_20600 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D LYSHEL_07870 secA; protein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D LYSHEL_20480 hypothetical protein K03110 ftsY; fused signal recognition particle receptor D LYSHEL_11250 secB; protein-export protein SecB K03071 secB; preprotein translocase subunit SecB D LYSHEL_23600 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis C 02040 Flagellar assembly [PATH:lhx02040] D LYSHEL_10670 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D LYSHEL_18570 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D LYSHEL_03750 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism [PATH:lhx04980] D LYSHEL_05750 ATP--cobalamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D LYSHEL_30240 metH2; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D LYSHEL_30230 metH1; 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:lhx01501] D LYSHEL_14060 ampG; MFS transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D LYSHEL_02110 nagZ; beta-hexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D LYSHEL_17960 bla; serine hydrolase K01467 ampC; beta-lactamase class C [EC:3.5.2.6] D LYSHEL_21990 hypothetical protein K02172 blaR1; bla regulator protein blaR1 D LYSHEL_31510 hypothetical protein K02172 blaR1; bla regulator protein blaR1 D LYSHEL_22000 BlaI family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D LYSHEL_31500 hypothetical protein K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D LYSHEL_06060 MexH family multidrug efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D LYSHEL_16070 acrA; multidrug resistance protein K03585 acrA; membrane fusion protein, multidrug efflux system D LYSHEL_06050 acrF; multidrug transporter K18138 acrB; multidrug efflux pump D LYSHEL_16080 acrB; multidrug efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump D LYSHEL_22490 RND transporter K18139 oprM; outer membrane protein, multidrug efflux system D LYSHEL_16740 tolC; membrane protein K12340 tolC; outer membrane protein D LYSHEL_17310 mrcA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D LYSHEL_10280 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D LYSHEL_08010 ftsI; penicillin-binding protein 3 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D LYSHEL_03880 HARLDQ motif MBL-fold protein K17837 bla2; metallo-beta-lactamase class B [EC:3.5.2.6] C 01502 Vancomycin resistance [PATH:lhx01502] D LYSHEL_01550 ddpX; D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D LYSHEL_07940 ddlB; D-alanine--D-alanine ligase B K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D LYSHEL_29860 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D LYSHEL_07990 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D LYSHEL_07980 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D LYSHEL_07960 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D LYSHEL_03200 peptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:lhx01503] D LYSHEL_08740 hypothetical protein K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D LYSHEL_09470 phoQ; two-component sensor histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D LYSHEL_09480 phoP; DNA-binding response regulator K07660 phoP; two-component system, OmpR family, response regulator PhoP D LYSHEL_30890 eptA; phosphoethanolamine transferase EptA K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43] D LYSHEL_09570 hypothetical protein K06079 cutF; copper homeostasis protein (lipoprotein) D LYSHEL_23950 amiC; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D LYSHEL_02210 mucD; peptidase S1 K04771 degP; serine protease Do [EC:3.4.21.107] D LYSHEL_09970 htrA; heat-shock protein K04771 degP; serine protease Do [EC:3.4.21.107] D LYSHEL_14450 hypothetical protein K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D LYSHEL_14460 dsbA; thiol:disulfide interchange protein K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D LYSHEL_06060 MexH family multidrug efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D LYSHEL_16070 acrA; multidrug resistance protein K03585 acrA; membrane fusion protein, multidrug efflux system D LYSHEL_06050 acrF; multidrug transporter K18138 acrB; multidrug efflux pump D LYSHEL_16080 acrB; multidrug efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump D LYSHEL_16740 tolC; membrane protein K12340 tolC; outer membrane protein D LYSHEL_21240 lpxA; acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:lhx01000] C 01001 Protein kinases [BR:lhx01001] D LYSHEL_04310 serine protein kinase RIO K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D LYSHEL_20850 hypothetical protein K11912 ppkA; serine/threonine-protein kinase PpkA [EC:2.7.11.1] D LYSHEL_11930 hypothetical protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D LYSHEL_15990 hypothetical protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D LYSHEL_06550 rsbT; anti-sigma regulatory factor K17752 rsbT; serine/threonine-protein kinase RsbT [EC:2.7.11.1] D LYSHEL_23420 tyrosine protein kinase K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3] D LYSHEL_02830 phoR; phosphate regulon sensor histidine kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D LYSHEL_08740 hypothetical protein K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D LYSHEL_09470 phoQ; two-component sensor histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D LYSHEL_02930 creC; two-component sensor histidine kinase K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3] D LYSHEL_15080 hypothetical protein K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D LYSHEL_01530 hypothetical protein K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3] D LYSHEL_10050 two-component sensor histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3] D LYSHEL_22290 hypothetical protein K02480 K02480; two-component system, NarL family, sensor kinase [EC:2.7.13.3] D LYSHEL_10970 algZ; histidine kinase K08082 algZ; two-component system, LytTR family, sensor histidine kinase AlgZ [EC:2.7.13.3] D LYSHEL_13140 ntrB; two-component system sensor protein K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D LYSHEL_07620 pilS; two-component sensor histidine kinase K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3] D LYSHEL_06200 hypothetical protein K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator) D LYSHEL_28740 rpfC; sensory/regulatory protein RpfC K10715 rpfC; two-component system, sensor histidine kinase RpfC [EC:2.7.13.3] D LYSHEL_19210 hypothetical protein K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:lhx01009] D LYSHEL_17790 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D LYSHEL_02580 protein phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16] C 01002 Peptidases and inhibitors [BR:lhx01002] D LYSHEL_23310 lspA; lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36] D LYSHEL_07840 xpsO; type 4 prepilin-like proteins leader peptide-processing enzyme K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D LYSHEL_12130 guaA_1; GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D LYSHEL_28270 guaA_2; GMP synthase [glutamine-hydrolyzing] K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D LYSHEL_04440 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D LYSHEL_15980 glmS; glutamine--fructose-6-phosphate aminotransferase [isomerizing] K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D LYSHEL_23430 hypothetical protein K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D LYSHEL_23440 hypothetical protein K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D LYSHEL_03330 peptidase M20 K01283 ACE; peptidyl-dipeptidase A [EC:3.4.15.1] D LYSHEL_24300 dcp; dipeptidyl carboxypeptidase II K01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5] D LYSHEL_12180 peptidase K08604 hap; vibriolysin [EC:3.4.24.25] D LYSHEL_03830 peptidase M4 K20273 zmpA; zinc metalloprotease ZmpA D LYSHEL_29790 peptidase M13 K07386 pepO; putative endopeptidase [EC:3.4.24.-] D LYSHEL_20760 peptidase M13 K07386 pepO; putative endopeptidase [EC:3.4.24.-] D LYSHEL_20770 peptidase K07386 pepO; putative endopeptidase [EC:3.4.24.-] D LYSHEL_03200 peptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D LYSHEL_01550 ddpX; D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D LYSHEL_13620 zinc protease K07263 pqqL; zinc protease [EC:3.4.24.-] D LYSHEL_08440 pepA; putative cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D LYSHEL_10030 cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D LYSHEL_04370 dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D LYSHEL_21440 dapE_2; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D LYSHEL_21400 map; methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D LYSHEL_17150 pepQ; Xaa-Pro dipeptidase K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9] D LYSHEL_17140 pepP; Xaa-Pro aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D LYSHEL_24610 peptidase M35 K08646 MEP; peptidyl-Lys metalloendopeptidase [EC:3.4.24.20] D LYSHEL_03620 hflB; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D LYSHEL_01440 htpX; protease HtpX K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D LYSHEL_02810 putative beta-barrel assembly-enhancing protease K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-] D LYSHEL_21280 zinc metalloprotease K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D LYSHEL_21990 hypothetical protein K02172 blaR1; bla regulator protein blaR1 D LYSHEL_31510 hypothetical protein K02172 blaR1; bla regulator protein blaR1 D LYSHEL_09460 hypothetical protein K09933 mtfA; MtfA peptidase D LYSHEL_02210 mucD; peptidase S1 K04771 degP; serine protease Do [EC:3.4.21.107] D LYSHEL_09970 htrA; heat-shock protein K04771 degP; serine protease Do [EC:3.4.21.107] D LYSHEL_19700 extracellular protease K14645 K14645; serine protease [EC:3.4.21.-] D LYSHEL_11060 prolyl oligopeptidase K01322 PREP; prolyl oligopeptidase [EC:3.4.21.26] D LYSHEL_11070 ptrB; oligopeptidase B K01354 ptrB; oligopeptidase B [EC:3.4.21.83] D LYSHEL_10240 dacC; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D LYSHEL_02690 clpP; ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D LYSHEL_02670 lon; Lon protease K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D LYSHEL_23690 lexA2; LexA repressor 2 K01356 lexA; repressor LexA [EC:3.4.21.88] D LYSHEL_02190 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D LYSHEL_05540 pip; proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D LYSHEL_09760 pepL; proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D LYSHEL_10190 prc; tail-specific protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D LYSHEL_14170 ctp; peptidase S41 K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D LYSHEL_21450 acyII; penicillin acylase K01434 pac; penicillin G amidase [EC:3.5.1.11] D LYSHEL_10450 sppA; protease K04773 sppA; protease IV [EC:3.4.21.-] D LYSHEL_11140 hslV; ATP-dependent protease subunit HslV K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] D LYSHEL_05950 ansA; isoaspartyl peptidase/L-asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D LYSHEL_20530 ggt; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D LYSHEL_21070 pmbA; PmbA protein K03592 pmbA; PmbA protein D LYSHEL_21050 tldD; TldD protein K03568 tldD; TldD protein D LYSHEL_30500 hypothetical protein K06894 yfhM; alpha-2-macroglobulin D LYSHEL_11420 hypothetical protein K06894 yfhM; alpha-2-macroglobulin D LYSHEL_03510 hflC; protein HflC K04087 hflC; modulator of FtsH protease HflC D LYSHEL_03520 hflK; HflK protein K04088 hflK; modulator of FtsH protease HflK C 01003 Glycosyltransferases [BR:lhx01003] D LYSHEL_06410 glycosyl transferase family 1 K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337] D LYSHEL_18140 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D LYSHEL_30490 pbpC; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D LYSHEL_06310 ponB; penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4] D LYSHEL_17310 mrcA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D LYSHEL_13580 ostA; alpha,alpha-trehalose-phosphate synthase (UDP-forming) K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347] C 01005 Lipopolysaccharide biosynthesis proteins [BR:lhx01005] D LYSHEL_21240 lpxA; acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D LYSHEL_21230 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D LYSHEL_07900 lpxC; UDP-3-O-acyl-N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D LYSHEL_21260 lpxD; UDP-3-O-acylglucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D LYSHEL_04420 lpxH; UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D LYSHEL_25330 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D LYSHEL_10650 htrB_1; lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D LYSHEL_16720 htrB_2; lipid A biosynthesis lauroyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D LYSHEL_16730 kdtA; 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D LYSHEL_30890 eptA; phosphoethanolamine transferase EptA K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43] D LYSHEL_02540 kdkA; 3-deoxy-D-manno-octulosonic acid kinase K11211 kdkA; 3-deoxy-D-manno-octulosonic acid kinase [EC:2.7.1.166] D LYSHEL_03760 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D LYSHEL_25340 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D LYSHEL_18610 haloacid dehalogenase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D LYSHEL_18620 kpsF; arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D LYSHEL_02550 opsX; ADP-heptose--LPS heptosyltransferase K12982 opsX; heptosyltransferase I [EC:2.4.-.-] D LYSHEL_08790 gmhA; phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D LYSHEL_08770 hypothetical protein K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D LYSHEL_08730 ykcC; putative glycosyltransferase YkcC K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-] D LYSHEL_18150 gtrB_3; glycosyl transferase family 2 K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:lhx01011] D LYSHEL_18640 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D LYSHEL_23750 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D LYSHEL_07950 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D LYSHEL_08000 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D LYSHEL_07940 ddlB; D-alanine--D-alanine ligase B K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D LYSHEL_29860 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D LYSHEL_07980 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D LYSHEL_07960 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D LYSHEL_13470 uppP; undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D LYSHEL_02910 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D LYSHEL_23280 mviN; putative lipid II flippase MurJ K03980 murJ; putative peptidoglycan lipid II flippase D LYSHEL_17310 mrcA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D LYSHEL_06310 ponB; penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4] D LYSHEL_30490 pbpC; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D LYSHEL_10280 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D LYSHEL_08010 ftsI; penicillin-binding protein 3 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D LYSHEL_10240 dacC; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D LYSHEL_18140 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D LYSHEL_01550 ddpX; D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D LYSHEL_03200 peptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D LYSHEL_14430 slt; murein transglycosylase K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D LYSHEL_10260 mltB; lytic murein transglycosylase B K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29] D LYSHEL_02630 dniR_1; lytic transglycosylase K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29] D LYSHEL_24130 dniR_2; lytic transglycosylase K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29] D LYSHEL_02280 aminodeoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] D LYSHEL_10250 rlpA; hypothetical protein K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D LYSHEL_23950 amiC; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D LYSHEL_07180 hypothetical protein K06078 lpp; murein lipoprotein C 01004 Lipid biosynthesis proteins [BR:lhx01004] D LYSHEL_02340 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D LYSHEL_01910 fabH_1; protein GumO K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D LYSHEL_02350 fabH_2; 3-oxoacyl-[acyl-carrier-protein] synthase 3 K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D LYSHEL_11440 fabF_2; beta-ketoacyl-[acyl-carrier-protein] synthase II K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D LYSHEL_02310 fabF_1; 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D LYSHEL_29970 short-chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D LYSHEL_02330 fabG_1; beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D LYSHEL_11490 fabG_3; 3-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D LYSHEL_21250 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D LYSHEL_02640 enoyl-[acyl-carrier-protein] reductase [NADH] K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D LYSHEL_03090 tesB; acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-] D LYSHEL_06450 desC; delta 9 acyl-lipid fatty acid desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1] D LYSHEL_11900 fatty acid desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1] D LYSHEL_11880 acsA; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D LYSHEL_28720 rpfB; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D LYSHEL_11990 plsB; glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] D LYSHEL_07520 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins C 01006 Prenyltransferases [BR:lhx01006] D LYSHEL_21120 ispA; farnesyl-diphosphate synthase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] D LYSHEL_19070 ispB; octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D LYSHEL_21310 uppS; ditrans,polycis-undecaprenyl-diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D LYSHEL_03550 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D LYSHEL_12700 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D LYSHEL_14320 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] C 01007 Amino acid related enzymes [BR:lhx01007] D LYSHEL_04410 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D LYSHEL_05670 glnS; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D LYSHEL_01450 gluQ; glutamyl-Q tRNA(Asp) synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D LYSHEL_14100 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D LYSHEL_09370 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D LYSHEL_01280 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D LYSHEL_13970 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D LYSHEL_24000 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D LYSHEL_23300 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D LYSHEL_08460 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D LYSHEL_20930 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D LYSHEL_28770 lysS_1; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D LYSHEL_07470 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D LYSHEL_29930 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D LYSHEL_01120 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D LYSHEL_12140 glyQ; glycine--tRNA ligase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D LYSHEL_12150 glyS; glycine--tRNA ligase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D LYSHEL_27520 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D LYSHEL_08540 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D LYSHEL_20120 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D LYSHEL_23720 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D LYSHEL_20160 pheS; phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D LYSHEL_20170 pheT; phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D LYSHEL_04670 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D LYSHEL_14730 aspC; aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D LYSHEL_30750 ybdL; aminotransferase K14287 ybdL; methionine transaminase [EC:2.6.1.88] D LYSHEL_01070 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D LYSHEL_27490 hisC2; histidinol-phosphate aminotransferase 2 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D LYSHEL_04530 kbl; 2-amino-3-ketobutyrate coenzyme A ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29] D LYSHEL_12730 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D LYSHEL_17550 bioA; adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D LYSHEL_16990 hemL; glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D LYSHEL_17750 ilvE; branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D LYSHEL_27470 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins [BR:lhx00194] D LYSHEL_15890 atpC; ATP synthase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D LYSHEL_15880 atpD; ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D LYSHEL_15870 atpG; ATP synthase gamma chain K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D LYSHEL_15860 atpA; ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D LYSHEL_15850 atpH; ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D LYSHEL_15840 atpF; ATP synthase subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b D LYSHEL_15830 atpE-1; ATP synthase subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c D LYSHEL_15820 atpB; ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:lhx03000] D LYSHEL_10180 hypothetical protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D LYSHEL_05620 oxyR; LysR family transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D LYSHEL_30660 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D LYSHEL_00730 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D LYSHEL_05390 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D LYSHEL_22030 transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D LYSHEL_22100 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D LYSHEL_16760 transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor D LYSHEL_10170 hypothetical protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D LYSHEL_29220 putative HTH-type transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D LYSHEL_28970 fur; transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D LYSHEL_04400 Fur family transcriptional regulator K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D LYSHEL_09000 clp; CRP-like protein Clp K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D LYSHEL_07280 transcriptional regulator FNR K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D LYSHEL_21970 hypothetical protein K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D LYSHEL_22580 transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D LYSHEL_03960 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator D LYSHEL_22000 BlaI family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D LYSHEL_31500 hypothetical protein K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D LYSHEL_09440 birA; bifunctional ligase/repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D LYSHEL_16430 putative Fis-like DNA-binding protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D LYSHEL_14210 putA; bifunctional protein PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D LYSHEL_30670 cell division protein BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D LYSHEL_11820 parB; chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D LYSHEL_28950 hrcA; heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D LYSHEL_23820 gcvR; glycine cleavage system transcriptional regulator K03567 gcvR; glycine cleavage system transcriptional repressor D LYSHEL_21520 hypothetical protein K07733 alpA; prophage regulatory protein D LYSHEL_29960 paiB; hypothetical protein K07734 paiB; transcriptional regulator D LYSHEL_18440 UPF0301 protein K07735 algH; putative transcriptional regulator D LYSHEL_08180 nrdR; transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR D LYSHEL_08040 mraZ; transcriptional regulator MraZ K03925 mraZ; transcriptional regulator MraZ C 03021 Transcription machinery [BR:lhx03021] D LYSHEL_04790 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D LYSHEL_05100 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D LYSHEL_05090 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D LYSHEL_17230 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D LYSHEL_10670 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D LYSHEL_02230 algU_1; RNA polymerase sigma factor RpoE K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D LYSHEL_06430 rpoE_1; RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D LYSHEL_16850 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D LYSHEL_19390 rfaY_2; DNA-directed RNA polymerase sigma-70 factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D LYSHEL_24540 algU_2; RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D LYSHEL_02020 Ecf-type RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D LYSHEL_15690 RNA polymerase subunit sigma-24 K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D LYSHEL_10380 rpoH; RNA polymerase sigma factor RpoH K03089 rpoH; RNA polymerase sigma-32 factor D LYSHEL_18570 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D LYSHEL_24820 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA D LYSHEL_08110 nusB; N utilization substance protein B K03625 nusB; transcription antitermination protein NusB D LYSHEL_05150 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG D LYSHEL_19900 sspA; stringent starvation protein A K03599 sspA; stringent starvation protein A D LYSHEL_19910 sspB; stringent starvation protein B K03600 sspB; stringent starvation protein B D LYSHEL_06550 rsbT; anti-sigma regulatory factor K17752 rsbT; serine/threonine-protein kinase RsbT [EC:2.7.11.1] D LYSHEL_06560 rsbS; anti-sigma factor antagonist K17762 rsbS; rsbT antagonist protein RsbS D LYSHEL_06570 rsbR; polyvinyl alcohol dehydrogenase K17763 rsbR; rsbT co-antagonist protein RsbR D LYSHEL_28840 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA D LYSHEL_24080 greB; transcription elongation factor GreB K04760 greB; transcription elongation factor GreB D LYSHEL_13230 hypothetical protein K03628 rho; transcription termination factor Rho C 03019 Messenger RNA biogenesis [BR:lhx03019] D LYSHEL_27820 hypothetical protein K08300 rne; ribonuclease E [EC:3.1.26.12] D LYSHEL_21030 rng; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-] D LYSHEL_02170 rnc; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3] D LYSHEL_22960 vacB; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D LYSHEL_31150 ribonuclease K01167 rnaSA; ribonuclease T1 [EC:4.6.1.24] D LYSHEL_28310 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D LYSHEL_13210 rhlB; ATP-dependent RNA helicase RhlB K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7] D LYSHEL_31520 rhlE; RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D LYSHEL_04180 deaD; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D LYSHEL_06370 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D LYSHEL_03750 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D LYSHEL_24870 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D LYSHEL_13230 hypothetical protein K03628 rho; transcription termination factor Rho D LYSHEL_28930 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D LYSHEL_16560 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D LYSHEL_03540 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein D LYSHEL_02840 ppk; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D LYSHEL_29430 polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D LYSHEL_05300 transcriptional regulator K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D LYSHEL_23860 pcnB; poly(A) polymerase I K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] D LYSHEL_16240 rppH; RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D LYSHEL_23730 csrA; carbon storage regulator K03563 csrA; carbon storage regulator D LYSHEL_18530 nucleotide-binding protein K06958 rapZ; RNase adapter protein RapZ D LYSHEL_06350 ATP-dependent helicase K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6] D LYSHEL_12540 hrpB; ATP-dependent helicase HrpB K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6] C 03041 Spliceosome C 03011 Ribosome [BR:lhx03011] D LYSHEL_27990 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D LYSHEL_21390 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D LYSHEL_04970 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D LYSHEL_04800 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D LYSHEL_04860 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D LYSHEL_29910 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D LYSHEL_05070 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D LYSHEL_04890 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D LYSHEL_08920 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D LYSHEL_05040 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D LYSHEL_04810 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D LYSHEL_05080 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D LYSHEL_04820 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D LYSHEL_04900 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D LYSHEL_24860 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D LYSHEL_23610 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D LYSHEL_04940 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D LYSHEL_29900 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D LYSHEL_04990 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D LYSHEL_23270 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D LYSHEL_14350 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D LYSHEL_04380 hypothetical protein K19033 PSRP4; 30S ribosomal protein S31 D LYSHEL_05130 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D LYSHEL_05000 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D LYSHEL_05030 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D LYSHEL_05020 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D LYSHEL_04910 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D LYSHEL_04880 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D LYSHEL_29890 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D LYSHEL_05120 hypothetical protein K02864 RP-L10; large subunit ribosomal protein L10 D LYSHEL_05140 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D LYSHEL_05110 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D LYSHEL_08930 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D LYSHEL_04930 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D LYSHEL_04840 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D LYSHEL_04960 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D LYSHEL_04780 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D LYSHEL_04870 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D LYSHEL_23640 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D LYSHEL_20150 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D LYSHEL_23240 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D LYSHEL_04980 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D LYSHEL_05010 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D LYSHEL_04920 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D LYSHEL_23250 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D LYSHEL_11860 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D LYSHEL_04950 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D LYSHEL_04850 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D LYSHEL_17280 rpmE2; 50S ribosomal protein L31 type B K02909 RP-L31; large subunit ribosomal protein L31 D LYSHEL_02360 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D LYSHEL_11870 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D LYSHEL_12420 hypothetical protein K02914 RP-L34; large subunit ribosomal protein L34 D LYSHEL_20140 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D LYSHEL_05200 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25 D LYSHEL_r00030 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D LYSHEL_r00060 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D LYSHEL_r00010 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D LYSHEL_r00040 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D LYSHEL_r00020 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D LYSHEL_r00050 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:lhx03009] D LYSHEL_02170 rnc; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3] D LYSHEL_04310 serine protein kinase RIO K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D LYSHEL_28310 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D LYSHEL_02160 era; GTPase Era K03595 era; GTPase D LYSHEL_23260 obg; GTPase Obg K03979 obgE; GTPase [EC:3.6.5.-] D LYSHEL_24820 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA D LYSHEL_08110 nusB; N utilization substance protein B K03625 nusB; transcription antitermination protein NusB D LYSHEL_05150 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG D LYSHEL_15720 rsuA; pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D LYSHEL_05810 rsmA; ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D LYSHEL_10590 rsmB; ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D LYSHEL_15710 rsmC; 16S rRNA methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D LYSHEL_20490 ribosomal RNA small subunit methyltransferase D K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D LYSHEL_17540 ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D LYSHEL_11800 rsmG; ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D LYSHEL_08030 rsmH; ribosomal RNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D LYSHEL_08060 rsmI; ribosomal RNA small subunit methyltransferase I K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D LYSHEL_23000 rlmB; 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D LYSHEL_03630 rlmE; ribosomal RNA large subunit methyltransferase E K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D LYSHEL_20980 rlmH; ribosomal RNA large subunit methyltransferase H K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D LYSHEL_12860 oxidoreductase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D LYSHEL_02950 rlmJ; ribosomal RNA large subunit methyltransferase J K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D LYSHEL_03050 rlmL; ribosomal RNA large subunit methyltransferase K/L K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173] D LYSHEL_05700 rlmM; ribosomal RNA large subunit methyltransferase M K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186] D LYSHEL_28120 rlmN; dual-specificity RNA methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D LYSHEL_02120 rlmD; 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D LYSHEL_26100 hypothetical protein K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D LYSHEL_30710 rluB; ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D LYSHEL_04540 pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D LYSHEL_27830 rluC; pseudouridine synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D LYSHEL_07560 rluD; ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D LYSHEL_12570 rluE; ribosomal large subunit pseudouridine synthase E K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] D LYSHEL_31050 pseudouridine synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] D LYSHEL_10810 hypothetical protein K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] D LYSHEL_06040 tRNA/rRNA methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-] D LYSHEL_08590 rimI; ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D LYSHEL_17720 rimK; putative alpha-L-glutamate ligase K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-] D LYSHEL_23620 rimM; ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM D LYSHEL_24070 rimO; ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] D LYSHEL_16450 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] D LYSHEL_24160 prmB; 50S ribosomal protein L3 glutamine methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298] D LYSHEL_30380 transcriptional regulator K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] D LYSHEL_27820 hypothetical protein K08300 rne; ribonuclease E [EC:3.1.26.12] D LYSHEL_21030 rng; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-] D LYSHEL_18450 putative pre-16S rRNA nuclease K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D LYSHEL_06780 dbpA; ATP-dependent RNA helicase K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6] D LYSHEL_04180 deaD; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D LYSHEL_14740 rsgA; putative ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D LYSHEL_28170 der; GTPase Der K03977 engA; GTPase D LYSHEL_03530 hflX; GTPase HflX K03665 hflX; GTPase D LYSHEL_10520 tsaC; threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D LYSHEL_17240 spoT; bifunctional GTP diphosphokinase/guanosine-3',5'-bis(diphosphate) 3'-diphosphatase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D LYSHEL_24840 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A D LYSHEL_24810 rimP; ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP D LYSHEL_04190 hypothetical protein K14761 rlbA; ribosome-associated protein D LYSHEL_20970 rsfS; ribosomal silencing factor RsfS K09710 ybeB; ribosome-associated protein D LYSHEL_19790 ybeY; endoribonuclease YbeY K07042 ybeY; probable rRNA maturation factor D LYSHEL_03640 RNA-binding protein K07574 yhbY; RNA-binding protein D LYSHEL_21060 UPF0307 protein K09889 yjgA; ribosome-associated protein D LYSHEL_18560 ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor D LYSHEL_05180 ychF; ribosome-binding ATPase YchF K06942 ychF; ribosome-binding ATPase D LYSHEL_02370 hypothetical protein K07040 yceD; DUF177 domain-containing protein C 03016 Transfer RNA biogenesis [BR:lhx03016] D LYSHEL_31150 ribonuclease K01167 rnaSA; ribonuclease T1 [EC:4.6.1.24] D LYSHEL_14420 cca; multifunctional CCA protein K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] D LYSHEL_04410 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D LYSHEL_08540 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D LYSHEL_23300 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D LYSHEL_20930 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D LYSHEL_24000 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D LYSHEL_05670 glnS; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D LYSHEL_13970 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D LYSHEL_28770 lysS_1; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D LYSHEL_07470 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D LYSHEL_23720 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D LYSHEL_29930 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D LYSHEL_20120 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D LYSHEL_27520 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D LYSHEL_01280 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D LYSHEL_08460 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D LYSHEL_01120 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D LYSHEL_20160 pheS; phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D LYSHEL_20170 pheT; phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D LYSHEL_14100 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D LYSHEL_09370 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D LYSHEL_10660 dtd; D-aminoacyl-tRNA deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D LYSHEL_26360 hypothetical protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D LYSHEL_02450 histidine triad nucleotide-binding protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D LYSHEL_17670 trmB; tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D LYSHEL_24200 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D LYSHEL_24850 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D LYSHEL_03710 truD; tRNA pseudouridine synthase D K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27] D LYSHEL_10520 tsaC; threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D LYSHEL_03550 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D LYSHEL_12450 mnmE; tRNA modification GTPase MnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D LYSHEL_12200 mnmG; tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D LYSHEL_17570 cysQ; 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D LYSHEL_12430 hypothetical protein K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D LYSHEL_23050 rnt; ribonuclease T K03683 rnt; ribonuclease T [EC:3.1.13.-] D LYSHEL_17200 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56] D LYSHEL_01510 rnD; ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5] D LYSHEL_31140 RNA 2',3'-cyclic phosphodiesterase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58] D LYSHEL_08210 yjjK; energy-dependent translational throttle protein EttA K06020 ettA; energy-dependent translational throttle protein EttA D LYSHEL_12140 glyQ; glycine--tRNA ligase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D LYSHEL_12150 glyS; glycine--tRNA ligase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D LYSHEL_01450 gluQ; glutamyl-Q tRNA(Asp) synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D LYSHEL_10340 deacylase K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-] D LYSHEL_28290 tadA; tRNA-specific adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D LYSHEL_09510 dusA; tRNA-dihydrouridine(20/20a) synthase K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-] D LYSHEL_17820 dusB; tRNA-dihydrouridine synthase B K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D LYSHEL_19850 miaB; tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D LYSHEL_23630 trmD; tRNA (guanine-N(1)-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D LYSHEL_06040 tRNA/rRNA methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-] D LYSHEL_20640 trmJ; tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200] D LYSHEL_13590 trmL; tRNA (cytidine(34)-2'-O)-methyltransferase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] D LYSHEL_13710 pseudouridylate synthase K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26] D LYSHEL_26100 hypothetical protein K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D LYSHEL_28680 mnmA; tRNA-specific 2-thiouridylase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D LYSHEL_12020 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA D LYSHEL_29920 hypothetical protein K13628 iscA; iron-sulfur cluster assembly protein D LYSHEL_24730 folate-binding protein YgfZ K06980 ygfZ; tRNA-modifying protein YgfZ D LYSHEL_20580 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D LYSHEL_07310 queC; 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D LYSHEL_16220 ptps; 6-carboxy-5,6,7,8-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D LYSHEL_07320 queE; 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D LYSHEL_12650 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D LYSHEL_23920 queG; epoxyqueuosine reductase K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6] D LYSHEL_20590 tgt; queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D LYSHEL_21140 tilS; tRNA(Ile)-lysidine synthase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D LYSHEL_06270 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D LYSHEL_14360 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D LYSHEL_23940 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D LYSHEL_24640 moeB_1; tRNA threonylcarbamoyladenosine dehydratase K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase D LYSHEL_22960 vacB; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D LYSHEL_24870 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:lhx03012] D LYSHEL_24830 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D LYSHEL_20130 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D LYSHEL_07500 yheS; ABC transporter ATP-binding protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 D LYSHEL_21380 tsf; elongation factor Ts K02357 tsf; elongation factor Ts D LYSHEL_05050 tufA_1; elongation factor Tu-A K02358 tuf; elongation factor Tu D LYSHEL_05170 tufA_2; elongation factor Tu-A K02358 tuf; elongation factor Tu D LYSHEL_05060 fusA; elongation factor G K02355 fusA; elongation factor G D LYSHEL_18990 elongation factor G K02355 fusA; elongation factor G D LYSHEL_05260 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1 D LYSHEL_21320 frr; ribosome-recycling factor K02838 frr; ribosome recycling factor D LYSHEL_05550 prmC; release factor glutamine methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D LYSHEL_05190 pth; peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D LYSHEL_28630 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D LYSHEL_00950 elongation factor P-like protein K02356 efp; elongation factor P D LYSHEL_01410 efp; elongation factor P K02356 efp; elongation factor P D LYSHEL_30540 lysS_2; elongation factor P--(R)-beta-lysine ligase K04568 epmA; elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-] D LYSHEL_01420 EF-P beta-lysylation protein EpmB K19810 epmB; L-lysine 2,3-aminomutase [EC:5.4.3.-] D LYSHEL_28780 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2 D LYSHEL_18200 prfC; peptide chain release factor 3 K02837 prfC; peptide chain release factor 3 D LYSHEL_13720 aminoacyl-tRNA hydrolase K15034 yaeJ; ribosome-associated protein C 03110 Chaperones and folding catalysts [BR:lhx03110] D LYSHEL_28640 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA D LYSHEL_07510 clpB; chaperone protein ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB D LYSHEL_02680 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D LYSHEL_11150 hslU; ATP-dependent protease ATPase subunit HslU K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU D LYSHEL_28930 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D LYSHEL_13050 hscC; molecular chaperone HscC K04045 hscC; molecular chaperone HscC D LYSHEL_16560 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D LYSHEL_28920 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D LYSHEL_30470 cbpA; cytochrome c biogenesis protein K05516 cbpA; curved DNA-binding protein D LYSHEL_18130 33 kDa chaperonin K04083 hslO; molecular chaperone Hsp33 D LYSHEL_28940 grpE; protein GrpE K03687 GRPE; molecular chaperone GrpE D LYSHEL_23650 hslR; heat shock protein 15 K04762 hslR; ribosome-associated heat shock protein Hsp15 D LYSHEL_16550 groS; 10 kDa chaperonin K04078 groES; chaperonin GroES D LYSHEL_02210 mucD; peptidase S1 K04771 degP; serine protease Do [EC:3.4.21.107] D LYSHEL_09970 htrA; heat-shock protein K04771 degP; serine protease Do [EC:3.4.21.107] D LYSHEL_03620 hflB; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D LYSHEL_15820 atpB; ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a D LYSHEL_25660 hypothetical protein K07346 fimC; fimbrial chaperone protein D LYSHEL_11250 secB; protein-export protein SecB K03071 secB; preprotein translocase subunit SecB D LYSHEL_23210 hypothetical protein K09796 pccA; periplasmic copper chaperone A D LYSHEL_19700 extracellular protease K14645 K14645; serine protease [EC:3.4.21.-] D LYSHEL_04710 ppiB; peptidyl-prolyl cis-trans isomerase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] D LYSHEL_02650 ppiD; peptidylprolyl isomerase K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8] D LYSHEL_30290 fkpA_1; putative FKBP-type peptidyl-prolyl cis-trans isomerase FkpA K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8] D LYSHEL_30300 fkpA_2; peptidyl-prolyl cis-trans isomerase K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8] D LYSHEL_03850 slyD; peptidyl-prolyl cis-trans isomerase K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] D LYSHEL_05790 surA; chaperone SurA K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8] D LYSHEL_09720 thiol reductase thioredoxin K03671 TXN; thioredoxin D LYSHEL_13220 trxA; thioredoxin K03671 TXN; thioredoxin D LYSHEL_20860 trx; co-chaperone YbbN K05838 ybbN; putative thioredoxin D LYSHEL_02800 hypothetical protein K03676 grxC; glutaredoxin 3 D LYSHEL_14690 glutaredoxin-like protein K07390 grxD; monothiol glutaredoxin D LYSHEL_19990 glutaredoxin K07390 grxD; monothiol glutaredoxin D LYSHEL_14450 hypothetical protein K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D LYSHEL_14460 dsbA; thiol:disulfide interchange protein K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D LYSHEL_04770 dsbB; disulfide bond formation protein B K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9] D LYSHEL_08380 dsbC; hypothetical protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1] D LYSHEL_16520 dsbD2; thiol:disulfide interchange protein DsbD 2 K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16] D LYSHEL_30830 dsbE; thiol:disulfide interchange protein K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE C 04131 Membrane trafficking [BR:lhx04131] D LYSHEL_28110 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D LYSHEL_17860 UPF0016 family membrane protein K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family D LYSHEL_06120 putative fructose-bisphosphate aldolase class 1 K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D LYSHEL_17510 gapA; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D LYSHEL_06150 pykA; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] C 04121 Ubiquitin system C 03051 Proteasome C 03032 DNA replication proteins [BR:lhx03032] D LYSHEL_02600 rnhA; ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D LYSHEL_02660 hupB; transcriptional regulator K03530 hupB; DNA-binding protein HU-beta D LYSHEL_20180 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha D LYSHEL_28000 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta D LYSHEL_12410 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D LYSHEL_29880 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D LYSHEL_21540 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D LYSHEL_14330 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D LYSHEL_19120 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D LYSHEL_21190 dnaE1; DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D LYSHEL_12400 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D LYSHEL_08450 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D LYSHEL_20950 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D LYSHEL_02260 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D LYSHEL_02590 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D LYSHEL_02480 hypothetical protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D LYSHEL_21220 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D LYSHEL_11340 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D LYSHEL_30550 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D LYSHEL_18710 DnaA regulatory inactivator Hda K10763 hda; DnaA-homolog protein D LYSHEL_30510 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D LYSHEL_12380 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D LYSHEL_21470 parC; DNA topoisomerase 4 subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D LYSHEL_03790 parE; DNA topoisomerase 4 subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D LYSHEL_07590 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D LYSHEL_10530 topA; DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:lhx03036] D LYSHEL_02170 rnc; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3] D LYSHEL_06120 putative fructose-bisphosphate aldolase class 1 K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D LYSHEL_08530 DNA-binding protein K03746 hns; DNA-binding protein H-NS D LYSHEL_02660 hupB; transcriptional regulator K03530 hupB; DNA-binding protein HU-beta D LYSHEL_20180 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha D LYSHEL_28000 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta D LYSHEL_30470 cbpA; cytochrome c biogenesis protein K05516 cbpA; curved DNA-binding protein D LYSHEL_12410 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D LYSHEL_06360 DNA starvation/stationary phase protection protein K04047 dps; starvation-inducible DNA-binding protein D LYSHEL_16430 putative Fis-like DNA-binding protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D LYSHEL_03540 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein D LYSHEL_10170 hypothetical protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D LYSHEL_30570 smc; chromosome partition protein Smc K03529 smc; chromosome segregation protein D LYSHEL_30690 segregation and condensation protein A K05896 scpA; segregation and condensation protein A D LYSHEL_30700 hypothetical protein K06024 scpB; segregation and condensation protein B D LYSHEL_07920 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA D LYSHEL_03740 ftsB; cell division protein FtsB K05589 ftsB; cell division protein FtsB D LYSHEL_13200 ftsE; ABC transporter ATP-binding protein K09812 ftsE; cell division transport system ATP-binding protein D LYSHEL_08010 ftsI; penicillin-binding protein 3 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D LYSHEL_28580 ftsK; DNA translocase FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D LYSHEL_08020 ftsL; cell division protein FtsL K03586 ftsL; cell division protein FtsL D LYSHEL_07930 ftsQ; cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ D LYSHEL_07970 ftsW; putative lipid II flippase FtsW K03588 ftsW; cell division protein FtsW D LYSHEL_13190 ftsX; cell division protein FtsX K09811 ftsX; cell division transport system permease protein D LYSHEL_07910 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D LYSHEL_30560 zipA; cell division protein ZipA K03528 zipA; cell division protein ZipA D LYSHEL_17100 cell division protein ZapA K09888 zapA; cell division protein ZapA D LYSHEL_17110 TIGR02449 family protein K09892 zapB; cell division protein ZapB D LYSHEL_12670 zapE; cell division protein ZapE K06916 zapE; cell division protein ZapE D LYSHEL_23950 amiC; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D LYSHEL_06060 MexH family multidrug efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D LYSHEL_16070 acrA; multidrug resistance protein K03585 acrA; membrane fusion protein, multidrug efflux system D LYSHEL_03290 minC; putative septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D LYSHEL_03300 minD; site-determining protein K03609 minD; septum site-determining protein MinD D LYSHEL_03310 minE; cell division topological specificity factor K03608 minE; cell division topological specificity factor D LYSHEL_10310 mreB; rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D LYSHEL_10300 mreC; cell shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC D LYSHEL_10290 mreD; rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD D LYSHEL_10270 mrdB; rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA D LYSHEL_11810 parA_1; chromosome partitioning protein ParA K03496 parA; chromosome partitioning protein D LYSHEL_13370 parA_2; hypothetical protein K03496 parA; chromosome partitioning protein D LYSHEL_11820 parB; chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D LYSHEL_21470 parC; DNA topoisomerase 4 subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D LYSHEL_03790 parE; DNA topoisomerase 4 subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D LYSHEL_12200 mnmG; tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D LYSHEL_11800 rsmG; ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D LYSHEL_11110 xerC; tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC D LYSHEL_08390 xerD; tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD D LYSHEL_24020 iron-sulfur cluster carrier protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D LYSHEL_14480 engB; putative GTP-binding protein EngB K03978 engB; GTP-binding protein C 03400 DNA repair and recombination proteins [BR:lhx03400] D LYSHEL_01950 phr; deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D LYSHEL_13170 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D LYSHEL_15330 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] D LYSHEL_20460 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D LYSHEL_23120 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D LYSHEL_17500 endonuclease K05986 NUCS; nuclease S1 [EC:3.1.30.1] D LYSHEL_07860 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LYSHEL_14010 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D LYSHEL_10180 hypothetical protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D LYSHEL_20270 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D LYSHEL_03230 DNA-3-methyladenine glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D LYSHEL_11910 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D LYSHEL_15740 endonuclease K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] D LYSHEL_31550 hypothetical protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D LYSHEL_11750 xthA1; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D LYSHEL_14050 exoA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D LYSHEL_03000 nfi; endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D LYSHEL_28820 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D LYSHEL_30550 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D LYSHEL_11340 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D LYSHEL_03480 uvrA2; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D LYSHEL_23230 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A D LYSHEL_20100 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B D LYSHEL_25360 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C D LYSHEL_11370 uvrD; DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D LYSHEL_05100 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D LYSHEL_05090 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D LYSHEL_04790 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D LYSHEL_17230 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D LYSHEL_02980 mfd; transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D LYSHEL_23660 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D LYSHEL_23960 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D LYSHEL_30110 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] D LYSHEL_01970 xseA; exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D LYSHEL_21130 xseB; exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D LYSHEL_21190 dnaE1; DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D LYSHEL_12400 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D LYSHEL_08450 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D LYSHEL_20950 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D LYSHEL_02260 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D LYSHEL_02590 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D LYSHEL_02480 hypothetical protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D LYSHEL_19120 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D LYSHEL_12950 recB; RecBCD enzyme subunit RecB K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] D LYSHEL_12940 recC; RecBCD enzyme subunit RecC K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] D LYSHEL_12960 recD; RecBCD enzyme subunit RecD K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D LYSHEL_23700 recA; protein RecA K03553 recA; recombination protein RecA D LYSHEL_07420 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D LYSHEL_07400 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D LYSHEL_07430 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D LYSHEL_10400 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D LYSHEL_23520 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms D LYSHEL_12390 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF D LYSHEL_17260 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D LYSHEL_02150 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D LYSHEL_02460 recR; recombination protein RecR K06187 recR; recombination protein RecR D LYSHEL_28960 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D LYSHEL_12030 rdgC; recombination-associated protein RdgC K03554 rdgC; recombination associated protein RdgC D LYSHEL_24120 hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase D LYSHEL_16100 ku; non-homologous end joining protein Ku K10979 ku; DNA end-binding protein Ku D LYSHEL_25690 lig3; ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D LYSHEL_30510 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D LYSHEL_12380 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D LYSHEL_07590 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D LYSHEL_10530 topA; DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D LYSHEL_02660 hupB; transcriptional regulator K03530 hupB; DNA-binding protein HU-beta D LYSHEL_16430 putative Fis-like DNA-binding protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D LYSHEL_20180 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha D LYSHEL_28000 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta D LYSHEL_06370 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D LYSHEL_08530 DNA-binding protein K03746 hns; DNA-binding protein H-NS D LYSHEL_31250 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D LYSHEL_23690 lexA2; LexA repressor 2 K01356 lexA; repressor LexA [EC:3.4.21.88] D LYSHEL_17060 CDP-6-deoxy-delta-3,4-glucoseen reductase K14160 imuA; protein ImuA D LYSHEL_17050 hypothetical protein K14161 imuB; protein ImuB D LYSHEL_17040 dnaE2; error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D LYSHEL_23710 recX; regulatory protein RecX K03565 recX; regulatory protein D LYSHEL_11950 rep; ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D LYSHEL_06290 yoaA; helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D LYSHEL_15390 lhr2; DNA ligase-associated DEXH box helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D LYSHEL_24880 ATP-dependent DNA helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D LYSHEL_09960 nrdJa; ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D LYSHEL_13860 ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D LYSHEL_13870 nrdB; ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C 03029 Mitochondrial biogenesis [BR:lhx03029] D LYSHEL_19880 petB; cytochrome b K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D LYSHEL_24830 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D LYSHEL_20130 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D LYSHEL_21380 tsf; elongation factor Ts K02357 tsf; elongation factor Ts D LYSHEL_05050 tufA_1; elongation factor Tu-A K02358 tuf; elongation factor Tu D LYSHEL_05170 tufA_2; elongation factor Tu-A K02358 tuf; elongation factor Tu D LYSHEL_05060 fusA; elongation factor G K02355 fusA; elongation factor G D LYSHEL_18990 elongation factor G K02355 fusA; elongation factor G D LYSHEL_02160 era; GTPase Era K03595 era; GTPase D LYSHEL_14100 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D LYSHEL_20930 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D LYSHEL_07470 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D LYSHEL_13970 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D LYSHEL_19120 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D LYSHEL_21270 oma; outer membrane protein assembly factor BamA K07277 SAM50; outer membrane protein insertion porin family D LYSHEL_28930 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D LYSHEL_28940 grpE; protein GrpE K03687 GRPE; molecular chaperone GrpE D LYSHEL_16560 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D LYSHEL_16550 groS; 10 kDa chaperonin K04078 groES; chaperonin GroES D LYSHEL_28920 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D LYSHEL_14690 glutaredoxin-like protein K07390 grxD; monothiol glutaredoxin D LYSHEL_19990 glutaredoxin K07390 grxD; monothiol glutaredoxin D LYSHEL_24020 iron-sulfur cluster carrier protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D LYSHEL_14320 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D LYSHEL_14260 cox11; cytochrome c oxidase assembly protein K02258 COX11; cytochrome c oxidase assembly protein subunit 11 D LYSHEL_14310 cytochrome oxidase assembly protein K02259 COX15; heme a synthase [EC:1.17.99.9] D LYSHEL_12440 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D LYSHEL_14290 SURF1-like protein K14998 SURF1; surfeit locus 1 family protein D LYSHEL_07190 SCO family protein K07152 SCO1; protein SCO1 D LYSHEL_24150 SCO family protein K07152 SCO1; protein SCO1 B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:lhx02000] D LYSHEL_25320 msbA_2; lipid A export ATP-binding/permease protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D LYSHEL_15610 metal ABC transporter permease K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter D LYSHEL_02050 draA; ABC transporter ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D LYSHEL_24510 msbA_1; ABC transporter ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D LYSHEL_31170 uup; ABC transporter ATP-binding protein K15738 uup; ABC transport system ATP-binding/permease protein D LYSHEL_17470 modA; molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein D LYSHEL_17460 modB; molybdate ABC transporter permease K02018 modB; molybdate transport system permease protein D LYSHEL_17450 modC; molybdate-transporting ATPase K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D LYSHEL_30580 ugpC; sugar ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D LYSHEL_08490 ABC transporter substrate-binding protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D LYSHEL_12910 yrbD; outer membrane lipid asymmetry maintenance protein MlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D LYSHEL_08510 yrbE_1; ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D LYSHEL_12920 yrbE_2; ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D LYSHEL_08500 yrbF_1; ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D LYSHEL_12930 yrbF_2; ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D LYSHEL_08480 ABC transporter K18480 linN; cholesterol transport system auxiliary component D LYSHEL_12900 yrbC; organic solvent ABC transporter K07323 mlaC; phospholipid transport system substrate-binding protein D LYSHEL_12890 hypothetical protein K07122 mlaB; phospholipid transport system transporter-binding protein D LYSHEL_30630 malE; sugar ABC transporter substrate-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D LYSHEL_30620 lacF; sugar ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein D LYSHEL_30610 lacG; sugar ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein D LYSHEL_23100 phoX; phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein D LYSHEL_23090 pstC; phosphate transport system permease protein K02037 pstC; phosphate transport system permease protein D LYSHEL_23080 pstA; phosphate transport system permease protein PstA K02038 pstA; phosphate transport system permease protein D LYSHEL_23070 pstB; phosphate import ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D LYSHEL_29590 amino acid ABC transporter substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D LYSHEL_18380 cobalamin-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D LYSHEL_06960 znuA; zinc ABC transporter substrate-binding protein K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein D LYSHEL_06950 znuB; ABC transporter K02075 ABC.ZM.P; zinc/manganese transport system permease protein D LYSHEL_08830 transport permease protein K09690 wzm; homopolymeric O-antigen transport system permease protein D LYSHEL_08820 wzt; ABC transporter ATP-binding protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14] D LYSHEL_08430 LPS export ABC transporter permease LptF K07091 lptF; lipopolysaccharide export system permease protein D LYSHEL_08420 LPS export ABC transporter permease LptG K11720 lptG; lipopolysaccharide export system permease protein D LYSHEL_18580 yhbG; ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D LYSHEL_12470 natB; sodium ABC transporter permease K09696 natB; sodium transport system permease protein D LYSHEL_12480 natA; sodium ABC transporter ATP-binding protein K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4] D LYSHEL_20920 ABC transporter ATP-binding protein K20459 nukF; lantibiotic transport system ATP-binding protein D LYSHEL_20910 hypothetical protein K20461 nukG; lantibiotic transport system permease protein D LYSHEL_25270 lolC; cell division protein FtsX K09808 lolC_E; lipoprotein-releasing system permease protein D LYSHEL_25280 lolD; lipoprotein-releasing system ATP-binding protein LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D LYSHEL_30800 hypothetical protein K02196 ccmD; heme exporter protein D D LYSHEL_30790 cycZ; heme ABC transporter permease K02195 ccmC; heme exporter protein C D LYSHEL_30780 cycW; heme exporter protein B K02194 ccmB; heme exporter protein B D LYSHEL_30770 ccmA; cytochrome c biogenesis ATP-binding export protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D LYSHEL_13190 ftsX; cell division protein FtsX K09811 ftsX; cell division transport system permease protein D LYSHEL_13200 ftsE; ABC transporter ATP-binding protein K09812 ftsE; cell division transport system ATP-binding protein D LYSHEL_30340 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D LYSHEL_10060 multidrug ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D LYSHEL_12520 transport permease protein K01992 ABC-2.P; ABC-2 type transport system permease protein D LYSHEL_15530 transport permease protein K01992 ABC-2.P; ABC-2 type transport system permease protein D LYSHEL_19840 transport permease protein K01992 ABC-2.P; ABC-2 type transport system permease protein D LYSHEL_30330 nodI; ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D LYSHEL_02880 hypothetical protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D LYSHEL_10070 multidrug ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D LYSHEL_12510 yadG_1; ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D LYSHEL_15520 yadG_2; ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D LYSHEL_19830 ABC drugE1 family efflux system ATPase K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D LYSHEL_05960 multidrug ABC transporter substrate-binding protein K02004 ABC.CD.P; putative ABC transport system permease protein D LYSHEL_10100 membrane protein K02004 ABC.CD.P; putative ABC transport system permease protein D LYSHEL_10110 membrane protein K02004 ABC.CD.P; putative ABC transport system permease protein D LYSHEL_15940 ybjZ_1; ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein D LYSHEL_15950 ybjZ_2; ABC transporter ATP-binding protein K02004 ABC.CD.P; putative ABC transport system permease protein D LYSHEL_10090 tptC; ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D LYSHEL_15960 ycfV; ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D LYSHEL_05970 macrolide ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D LYSHEL_18880 ynhD; ABC transporter ATP-binding protein K09013 sufC; Fe-S cluster assembly ATP-binding protein D LYSHEL_10440 norM; putative multidrug resistance protein NorM K26939 norM; MATE family, multidrug efflux pump D LYSHEL_22870 MFS transporter K08139 HXT; MFS transporter, SP family, sugar:H+ symporter D LYSHEL_14060 ampG; MFS transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D LYSHEL_13080 tetA; tetracycline resistance MFS efflux pump K08151 tetA; MFS transporter, DHA1 family, tetracycline resistance protein D LYSHEL_03380 bcr; Bcr/CflA family drug resistance efflux transporter K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D LYSHEL_23550 pmrB; MFS transporter K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein D LYSHEL_18500 ptsI; phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D LYSHEL_18510 ptsH; phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr D LYSHEL_18520 hypothetical protein K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D LYSHEL_18550 ptsN; PTS fructose transporter subunit IIA K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] D LYSHEL_00160 aqpZ; aquaporin Z K06188 aqpZ; aquaporin Z D LYSHEL_13510 amtB; ammonium transporter K03320 amt; ammonium transporter, Amt family D LYSHEL_31090 gst_4; glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D LYSHEL_04620 gst_1; glutathione S-transferase GST-4.5 K00799 GST; glutathione S-transferase [EC:2.5.1.18] D LYSHEL_05650 gst_2; glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D LYSHEL_06700 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D LYSHEL_24700 gst_3; glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D LYSHEL_26010 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D LYSHEL_19900 sspA; stringent starvation protein A K03599 sspA; stringent starvation protein A D LYSHEL_17400 hypothetical protein K07114 yfbK; Ca-activated chloride channel homolog D LYSHEL_17410 membrane protein K07114 yfbK; Ca-activated chloride channel homolog D LYSHEL_17620 mscL; large-conductance mechanosensitive channel K03282 mscL; large conductance mechanosensitive channel D LYSHEL_03440 hypothetical protein K05802 mscK; potassium-dependent mechanosensitive channel D LYSHEL_18470 mgtE; magnesium transporter MgtE K06213 mgtE; magnesium transporter D LYSHEL_12340 exbB_1; biopolymer transport protein ExbB K03561 exbB; biopolymer transport protein ExbB D LYSHEL_25300 exbB_2; biopolymer transporter ExbB K03561 exbB; biopolymer transport protein ExbB D LYSHEL_12320 exbD2_1; biopolymer transport protein exbD2 K03559 exbD; biopolymer transport protein ExbD D LYSHEL_12330 exbD1; biopolymer transport protein exbD1 K03559 exbD; biopolymer transport protein ExbD D LYSHEL_22750 exbD2_2; biopolymer transport protein exbD2 K03559 exbD; biopolymer transport protein ExbD D LYSHEL_25310 exbD; biopolymer transporter ExbD K03559 exbD; biopolymer transport protein ExbD D LYSHEL_07380 tolQ; protein TolQ K03562 tolQ; biopolymer transport protein TolQ D LYSHEL_07370 tolR; protein TolR K03560 tolR; biopolymer transport protein TolR D LYSHEL_16200 hypothetical protein K03284 corA; magnesium transporter D LYSHEL_19760 corA; magnesium transporter CorA K03284 corA; magnesium transporter D LYSHEL_28540 crcB; putative fluoride ion transporter CrcB K06199 crcB; fluoride exporter D LYSHEL_19560 DUF1211 domain-containing membrane protein K24915 TMEM175; TMEM175 potassium channel family protein D LYSHEL_20680 tlyC; hemolysin K03699 tlyC; magnesium and cobalt exporter, CNNM family D LYSHEL_23110 oprO; porin K07221 oprO_P; phosphate-selective porin OprO and OprP D LYSHEL_04560 mopB; membrane protein K03286 TC.OOP; OmpA-OmpF porin, OOP family D LYSHEL_14200 ompP1; membrane protein K06076 fadL; long-chain fatty acid transport protein D LYSHEL_20870 outer membrane usher protein K07347 fimD; outer membrane usher protein D LYSHEL_25650 hypothetical protein K07347 fimD; outer membrane usher protein D LYSHEL_17700 estA; lipase/esterase K12686 apeE; outer membrane lipase/esterase D LYSHEL_19170 hypothetical protein K19231 bmaC; fibronectin-binding autotransporter adhesin D LYSHEL_18830 bfrE; TonB-dependent receptor K16090 fiu; catecholate siderophore receptor D LYSHEL_16020 btuB_2; TonB-dependent vitamin B12 receptor K16092 btuB; vitamin B12 transporter D LYSHEL_29760 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D LYSHEL_05590 btuB_1; TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D LYSHEL_10800 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D LYSHEL_10870 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D LYSHEL_19330 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D LYSHEL_24910 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D LYSHEL_16740 tolC; membrane protein K12340 tolC; outer membrane protein D LYSHEL_24420 oprN; RND transporter K18300 oprN; outer membrane protein, multidrug efflux system D LYSHEL_22490 RND transporter K18139 oprM; outer membrane protein, multidrug efflux system D LYSHEL_23510 capsular polysaccharide biosynthesis protein K01991 wza; polysaccharide biosynthesis/export protein D LYSHEL_21270 oma; outer membrane protein assembly factor BamA K07277 SAM50; outer membrane protein insertion porin family D LYSHEL_28160 bamB; outer membrane protein assembly factor BamB K17713 bamB; outer membrane protein assembly factor BamB D LYSHEL_07570 comL; outer membrane protein assembly factor BamD K05807 bamD; outer membrane protein assembly factor BamD D LYSHEL_28980 bamE; outer membrane protein assembly factor BamE K06186 bamE; outer membrane protein assembly factor BamE D LYSHEL_12160 outer membrane protein assembly factor K07278 tamA; translocation and assembly module TamA D LYSHEL_12170 hypothetical protein K09800 tamB; translocation and assembly module TamB D LYSHEL_19710 hypothetical protein K21449 ata; trimeric autotransporter adhesin D LYSHEL_18590 lptA; lipopolysaccharide export system protein LptA K09774 lptA; lipopolysaccharide export system protein LptA D LYSHEL_18600 hypothetical protein K11719 lptC; lipopolysaccharide export system protein LptC D LYSHEL_05780 lptD; LPS-assembly protein LptD K04744 lptD; LPS-assembly protein D LYSHEL_20940 rlpB; LPS-assembly lipoprotein LptE K03643 lptE; LPS-assembly lipoprotein D LYSHEL_19780 ybeX; magnesium transporter K06189 corC; hemolysin (HlyC) family protein D LYSHEL_22920 suc1; MFS transporter K16211 malY; maltose/moltooligosaccharide transporter D LYSHEL_29600 potE; putrescine-ornithine antiporter K03756 potE; putrescine:ornithine antiporter D LYSHEL_29580 histidine-histamine antiporter K03759 adiC; arginine:agmatine antiporter D LYSHEL_21330 czcD_1; cobalt transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein D LYSHEL_29290 czcD_2; cation diffusion facilitator transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein D LYSHEL_29310 cytochrome-c peroxidase K15726 czcA; heavy metal efflux system protein D LYSHEL_29070 cation transporter K07787 cusA; copper/silver efflux system protein D LYSHEL_03390 resistance-nodulation-cell division efflux transporter K18303 mexK; multidrug efflux pump D LYSHEL_16780 resistance-nodulation-cell division efflux transporter K18303 mexK; multidrug efflux pump D LYSHEL_06050 acrF; multidrug transporter K18138 acrB; multidrug efflux pump D LYSHEL_16080 acrB; multidrug efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump D LYSHEL_24440 mexF; multidrug efflux RND transporter permease subunit K19585 oqxB; multidrug efflux pump D LYSHEL_27720 hypothetical protein K08978 TC.BAT1; bacterial/archaeal transporter family protein D LYSHEL_30190 membrane protein K15268 eamA; O-acetylserine/cysteine efflux transporter D LYSHEL_10140 membrane protein K05786 rarD; chloramphenicol-sensitive protein RarD D LYSHEL_22130 membrane protein K05786 rarD; chloramphenicol-sensitive protein RarD D LYSHEL_09220 yrbG; sodium:calcium antiporter K07301 yrbG; cation:H+ antiporter D LYSHEL_03560 putP; sodium:proline symporter K11928 putP; sodium/proline symporter D LYSHEL_22410 gltS; sodium/glutamate symporter K03312 gltS; glutamate:Na+ symporter, ESS family D LYSHEL_09210 nhaA; Na(+)/H(+) antiporter NhaA K03313 nhaA; Na+:H+ antiporter, NhaA family D LYSHEL_13850 K+/H+ antiporter K11105 cvrA; potassium/hydrogen antiporter D LYSHEL_13250 kefC; potassium transporter K11747 kefB; glutathione-regulated potassium-efflux system protein KefB D LYSHEL_23670 efflux pump/antiporter K26735 KEA4_5_6; K+:H+ antiporter D LYSHEL_11480 hypothetical protein K26731 CHX; K+:H+ antiporter D LYSHEL_23280 mviN; putative lipid II flippase MurJ K03980 murJ; putative peptidoglycan lipid II flippase D LYSHEL_07410 kup_1; putative potassium transport system protein kup K03549 kup; KUP system potassium uptake protein D LYSHEL_15060 kup_2; putative potassium transport system protein kup K03549 kup; KUP system potassium uptake protein D LYSHEL_20830 membrane protein K09125 yhhQ; queuosine precursor transporter D LYSHEL_22260 hypothetical protein K05595 marC; multiple antibiotic resistance protein D LYSHEL_07970 ftsW; putative lipid II flippase FtsW K03588 ftsW; cell division protein FtsW D LYSHEL_17860 UPF0016 family membrane protein K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family D LYSHEL_20900 membrane protein K15383 K15383; MtN3 and saliva related transmembrane protein D LYSHEL_06260 tonB; cell envelope biogenesis protein TonB K03832 tonB; periplasmic protein TonB D LYSHEL_12350 hypothetical protein K03832 tonB; periplasmic protein TonB D LYSHEL_12460 cell envelope biogenesis protein TonB K03832 tonB; periplasmic protein TonB D LYSHEL_20990 hypothetical protein K03832 tonB; periplasmic protein TonB D LYSHEL_07340 ompP6; peptidoglycan-associated lipoprotein K03640 pal; peptidoglycan-associated lipoprotein D LYSHEL_07360 tolA; protein TolA K03646 tolA; colicin import membrane protein D LYSHEL_07350 tolB; protein TolB K03641 tolB; TolB protein D LYSHEL_25620 hypothetical protein K03641 tolB; TolB protein D LYSHEL_16880 hppA; K(+)-insensitive pyrophosphate-energized proton pump K15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1] D LYSHEL_23560 multidrug resistance protein K03543 emrA; membrane fusion protein, multidrug efflux system D LYSHEL_29320 hypothetical protein K15727 czcB; membrane fusion protein, heavy metal efflux system D LYSHEL_29080 hypothetical protein K07798 cusB; membrane fusion protein, copper/silver efflux system D LYSHEL_03400 multidrug transporter K18302 mexJ; membrane fusion protein, multidrug efflux system D LYSHEL_16770 resistance-nodulation-cell division efflux membrane fusion protein K18302 mexJ; membrane fusion protein, multidrug efflux system D LYSHEL_06060 MexH family multidrug efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D LYSHEL_16070 acrA; multidrug resistance protein K03585 acrA; membrane fusion protein, multidrug efflux system D LYSHEL_24450 mexE; MexE family multidrug efflux RND transporter periplasmic adaptor subunit K19586 oqxA; membrane fusion protein, multidrug efflux system D LYSHEL_23420 tyrosine protein kinase K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3] D LYSHEL_00870 feoA; iron transporter K04758 feoA; ferrous iron transport protein A D LYSHEL_00860 feoB; ferrous iron transporter B K04759 feoB; ferrous iron transport protein B D LYSHEL_30820 cycK; c-type cytochrome biogenesis protein CcmF K02198 ccmF; cytochrome c-type biogenesis protein CcmF C 02044 Secretion system [BR:lhx02044] D LYSHEL_16740 tolC; membrane protein K12340 tolC; outer membrane protein D LYSHEL_04090 gspA; ATPase AAA K02450 gspA; general secretion pathway protein A D LYSHEL_08250 xpsD; type II secretion system protein D K02453 gspD; general secretion pathway protein D D LYSHEL_08350 xpsE; type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D LYSHEL_08340 xpsF; type II secretion system protein F K02455 gspF; general secretion pathway protein F D LYSHEL_00240 hypothetical protein K02456 gspG; general secretion pathway protein G D LYSHEL_08330 xpsG; type II secretion system protein G K02456 gspG; general secretion pathway protein G D LYSHEL_08320 xpsH; type II secretion system protein H K02457 gspH; general secretion pathway protein H D LYSHEL_08310 hypothetical protein K02458 gspI; general secretion pathway protein I D LYSHEL_08300 xpsJ; type II secretion system protein J K02459 gspJ; general secretion pathway protein J D LYSHEL_08290 pefK; type II secretion system protein K K02460 gspK; general secretion pathway protein K D LYSHEL_08280 pefL; type II secretion system protein L K02461 gspL; general secretion pathway protein L D LYSHEL_08270 xpsM; protein XpsM K02462 gspM; general secretion pathway protein M D LYSHEL_08260 xpsN; general secretion pathway protein N K02463 gspN; general secretion pathway protein N D LYSHEL_07840 xpsO; type 4 prepilin-like proteins leader peptide-processing enzyme K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D LYSHEL_07640 pilE_1; pilin K02650 pilA; type IV pilus assembly protein PilA D LYSHEL_07650 pilE_2; pilin K02650 pilA; type IV pilus assembly protein PilA D LYSHEL_22200 pilE_3; pilin K02650 pilA; type IV pilus assembly protein PilA D LYSHEL_07820 pilB; type IV-A pilus assembly ATPase PilB K02652 pilB; type IV pilus assembly protein PilB D LYSHEL_07830 pilC; type II secretion system protein F K02653 pilC; type IV pilus assembly protein PilC D LYSHEL_31360 hypothetical protein K02655 pilE; type IV pilus assembly protein PilE D LYSHEL_20040 hypothetical protein K02655 pilE; type IV pilus assembly protein PilE D LYSHEL_28130 pilF; type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF D LYSHEL_06240 pilG; response regulator K02657 pilG; twitching motility two-component system response regulator PilG D LYSHEL_30460 pilH_3; response regulator K02658 pilH; twitching motility two-component system response regulator PilH D LYSHEL_01940 pilH_1; response regulator K02658 pilH; twitching motility two-component system response regulator PilH D LYSHEL_06230 pilH_2; response regulator K02658 pilH; twitching motility two-component system response regulator PilH D LYSHEL_06220 pilI; pilus biogenesis protein K02659 pilI; twitching motility protein PilI D LYSHEL_06210 pilJ; pilus biogenesis protein K02660 pilJ; twitching motility protein PilJ D LYSHEL_17320 pilM; fimbrial assembly protein K02662 pilM; type IV pilus assembly protein PilM D LYSHEL_17330 pilN; fimbrial protein K02663 pilN; type IV pilus assembly protein PilN D LYSHEL_17340 pilO; fimbrial protein K02664 pilO; type IV pilus assembly protein PilO D LYSHEL_17350 pilP; fimbrial protein K02665 pilP; type IV pilus assembly protein PilP D LYSHEL_17360 pilQ; fimbrial protein K02666 pilQ; type IV pilus assembly protein PilQ D LYSHEL_18420 pilT; twitching motility protein PilT K02669 pilT; twitching motility protein PilT D LYSHEL_08890 uptC; twitching motility protein PilT K02670 pilU; twitching motility protein PilU D LYSHEL_15580 pilT-2; twitching motility protein PilT K02670 pilU; twitching motility protein PilU D LYSHEL_18430 pilU; twitching motility protein PilT K02670 pilU; twitching motility protein PilU D LYSHEL_31400 type IV pilus modification protein PilV K02671 pilV; type IV pilus assembly protein PilV D LYSHEL_31390 pilus assembly protein PilW K02672 pilW; type IV pilus assembly protein PilW D LYSHEL_31380 pilus assembly protein PilX K02673 pilX; type IV pilus assembly protein PilX D LYSHEL_31370 hypothetical protein K02674 pilY1; type IV pilus assembly protein PilY1 D LYSHEL_02250 pilZ; type IV fimbriae assembly protein K02676 pilZ; type IV pilus assembly protein PilZ D LYSHEL_31410 hypothetical protein K08084 fimT; type IV fimbrial biogenesis protein FimT D LYSHEL_20090 hypothetical protein K08084 fimT; type IV fimbrial biogenesis protein FimT D LYSHEL_06630 hypothetical protein K08085 fimU; type IV fimbrial biogenesis protein FimU D LYSHEL_20050 hypothetical protein K08085 fimU; type IV fimbrial biogenesis protein FimU D LYSHEL_24190 hypothetical protein K08086 fimV; pilus assembly protein FimV D LYSHEL_18800 hypothetical protein K02237 comEA; competence protein ComEA D LYSHEL_25290 comA; DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC D LYSHEL_08380 dsbC; hypothetical protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1] D LYSHEL_17700 estA; lipase/esterase K12686 apeE; outer membrane lipase/esterase D LYSHEL_20850 hypothetical protein K11912 ppkA; serine/threonine-protein kinase PpkA [EC:2.7.11.1] D LYSHEL_20890 hypothetical protein K07345 fimA; major type 1 subunit fimbrin (pilin) D LYSHEL_25660 hypothetical protein K07346 fimC; fimbrial chaperone protein D LYSHEL_20870 outer membrane usher protein K07347 fimD; outer membrane usher protein D LYSHEL_25650 hypothetical protein K07347 fimD; outer membrane usher protein D LYSHEL_25640 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D LYSHEL_25670 pru; protein U K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D LYSHEL_25630 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D LYSHEL_07870 secA; protein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D LYSHEL_11250 secB; protein-export protein SecB K03071 secB; preprotein translocase subunit SecB D LYSHEL_20610 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D LYSHEL_05160 hypothetical protein K03073 secE; preprotein translocase subunit SecE D LYSHEL_20620 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D LYSHEL_25070 hypothetical protein K03075 secG; preprotein translocase subunit SecG D LYSHEL_04830 secY; protein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D LYSHEL_23600 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D LYSHEL_20480 hypothetical protein K03110 ftsY; fused signal recognition particle receptor D LYSHEL_20600 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D LYSHEL_12440 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D LYSHEL_12090 hypothetical protein K03116 tatA; sec-independent protein translocase protein TatA D LYSHEL_12100 hypothetical protein K03117 tatB; sec-independent protein translocase protein TatB D LYSHEL_12110 tatC; sec-independent protein translocase protein TatC K03118 tatC; sec-independent protein translocase protein TatC C 02042 Bacterial toxins [BR:lhx02042] D LYSHEL_20680 tlyC; hemolysin K03699 tlyC; magnesium and cobalt exporter, CNNM family C 02022 Two-component system [BR:lhx02022] D LYSHEL_02830 phoR; phosphate regulon sensor histidine kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D LYSHEL_02820 phoB; DNA-binding response regulator K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D LYSHEL_08740 hypothetical protein K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D LYSHEL_09470 phoQ; two-component sensor histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D LYSHEL_09480 phoP; DNA-binding response regulator K07660 phoP; two-component system, OmpR family, response regulator PhoP D LYSHEL_02930 creC; two-component sensor histidine kinase K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3] D LYSHEL_02940 creB; DNA-binding response regulator K07663 creB; two-component system, OmpR family, catabolic regulation response regulator CreB D LYSHEL_15080 hypothetical protein K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D LYSHEL_15090 kdpE_1; DNA-binding response regulator K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D LYSHEL_22690 kdpE_2; DNA-binding response regulator K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D LYSHEL_21490 DNA-binding response regulator K02483 K02483; two-component system, OmpR family, response regulator D LYSHEL_01530 hypothetical protein K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3] D LYSHEL_01520 DNA-binding response regulator K20264 fusR; two-component system, NarL family, response regulator FusR D LYSHEL_27810 gacA; DNA-binding response regulator K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY D LYSHEL_19100 DNA-binding response regulator K07690 evgA; two-component system, NarL family, response regulator EvgA D LYSHEL_10050 two-component sensor histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3] D LYSHEL_10040 DNA-binding response regulator K07693 desR; two-component system, NarL family, response regulator DesR D LYSHEL_22290 hypothetical protein K02480 K02480; two-component system, NarL family, sensor kinase [EC:2.7.13.3] D LYSHEL_10970 algZ; histidine kinase K08082 algZ; two-component system, LytTR family, sensor histidine kinase AlgZ [EC:2.7.13.3] D LYSHEL_13140 ntrB; two-component system sensor protein K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D LYSHEL_13130 ntrC_1; nitrogen regulation protein NR(I) K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG D LYSHEL_07620 pilS; two-component sensor histidine kinase K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3] D LYSHEL_07630 pilR; sigma-54-dependent Fis family transcriptional regulator K02667 pilR; two-component system, NtrC family, response regulator PilR D LYSHEL_06200 hypothetical protein K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator) D LYSHEL_06240 pilG; response regulator K02657 pilG; twitching motility two-component system response regulator PilG D LYSHEL_30460 pilH_3; response regulator K02658 pilH; twitching motility two-component system response regulator PilH D LYSHEL_01940 pilH_1; response regulator K02658 pilH; twitching motility two-component system response regulator PilH D LYSHEL_06230 pilH_2; response regulator K02658 pilH; twitching motility two-component system response regulator PilH D LYSHEL_06190 hypothetical protein K06597 chpB; chemosensory pili system protein ChpB (putative protein-glutamate methylesterase) D LYSHEL_28740 rpfC; sensory/regulatory protein RpfC K10715 rpfC; two-component system, sensor histidine kinase RpfC [EC:2.7.13.3] D LYSHEL_28750 rpfG; two-component system response regulator K13815 rpfG; two-component system, response regulator RpfG D LYSHEL_19210 hypothetical protein K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3] C 02035 Bacterial motility proteins [BR:lhx02035] D LYSHEL_06240 pilG; response regulator K02657 pilG; twitching motility two-component system response regulator PilG D LYSHEL_30460 pilH_3; response regulator K02658 pilH; twitching motility two-component system response regulator PilH D LYSHEL_01940 pilH_1; response regulator K02658 pilH; twitching motility two-component system response regulator PilH D LYSHEL_06230 pilH_2; response regulator K02658 pilH; twitching motility two-component system response regulator PilH D LYSHEL_06220 pilI; pilus biogenesis protein K02659 pilI; twitching motility protein PilI D LYSHEL_06210 pilJ; pilus biogenesis protein K02660 pilJ; twitching motility protein PilJ D LYSHEL_06200 hypothetical protein K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator) D LYSHEL_07630 pilR; sigma-54-dependent Fis family transcriptional regulator K02667 pilR; two-component system, NtrC family, response regulator PilR D LYSHEL_07620 pilS; two-component sensor histidine kinase K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3] D LYSHEL_18420 pilT; twitching motility protein PilT K02669 pilT; twitching motility protein PilT D LYSHEL_08890 uptC; twitching motility protein PilT K02670 pilU; twitching motility protein PilU D LYSHEL_15580 pilT-2; twitching motility protein PilT K02670 pilU; twitching motility protein PilU D LYSHEL_18430 pilU; twitching motility protein PilT K02670 pilU; twitching motility protein PilU D LYSHEL_06190 hypothetical protein K06597 chpB; chemosensory pili system protein ChpB (putative protein-glutamate methylesterase) D LYSHEL_06180 chemotaxis protein CheW K06598 chpC; chemosensory pili system protein ChpC D LYSHEL_07640 pilE_1; pilin K02650 pilA; type IV pilus assembly protein PilA D LYSHEL_07650 pilE_2; pilin K02650 pilA; type IV pilus assembly protein PilA D LYSHEL_22200 pilE_3; pilin K02650 pilA; type IV pilus assembly protein PilA D LYSHEL_07820 pilB; type IV-A pilus assembly ATPase PilB K02652 pilB; type IV pilus assembly protein PilB D LYSHEL_07830 pilC; type II secretion system protein F K02653 pilC; type IV pilus assembly protein PilC D LYSHEL_07840 xpsO; type 4 prepilin-like proteins leader peptide-processing enzyme K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D LYSHEL_28130 pilF; type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF D LYSHEL_17360 pilQ; fimbrial protein K02666 pilQ; type IV pilus assembly protein PilQ D LYSHEL_17350 pilP; fimbrial protein K02665 pilP; type IV pilus assembly protein PilP D LYSHEL_17340 pilO; fimbrial protein K02664 pilO; type IV pilus assembly protein PilO D LYSHEL_17330 pilN; fimbrial protein K02663 pilN; type IV pilus assembly protein PilN D LYSHEL_17320 pilM; fimbrial assembly protein K02662 pilM; type IV pilus assembly protein PilM D LYSHEL_02250 pilZ; type IV fimbriae assembly protein K02676 pilZ; type IV pilus assembly protein PilZ D LYSHEL_31400 type IV pilus modification protein PilV K02671 pilV; type IV pilus assembly protein PilV D LYSHEL_31390 pilus assembly protein PilW K02672 pilW; type IV pilus assembly protein PilW D LYSHEL_31380 pilus assembly protein PilX K02673 pilX; type IV pilus assembly protein PilX D LYSHEL_31370 hypothetical protein K02674 pilY1; type IV pilus assembly protein PilY1 D LYSHEL_31360 hypothetical protein K02655 pilE; type IV pilus assembly protein PilE D LYSHEL_20040 hypothetical protein K02655 pilE; type IV pilus assembly protein PilE D LYSHEL_20890 hypothetical protein K07345 fimA; major type 1 subunit fimbrin (pilin) D LYSHEL_25660 hypothetical protein K07346 fimC; fimbrial chaperone protein D LYSHEL_20870 outer membrane usher protein K07347 fimD; outer membrane usher protein D LYSHEL_25650 hypothetical protein K07347 fimD; outer membrane usher protein D LYSHEL_25640 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D LYSHEL_25670 pru; protein U K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D LYSHEL_25630 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:lhx04812] D LYSHEL_10310 mreB; rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D LYSHEL_07910 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D LYSHEL_07920 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA D LYSHEL_03290 minC; putative septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D LYSHEL_03300 minD; site-determining protein K03609 minD; septum site-determining protein MinD D LYSHEL_03310 minE; cell division topological specificity factor K03608 minE; cell division topological specificity factor D LYSHEL_11810 parA_1; chromosome partitioning protein ParA K03496 parA; chromosome partitioning protein D LYSHEL_13370 parA_2; hypothetical protein K03496 parA; chromosome partitioning protein D LYSHEL_11820 parB; chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:lhx04147] D LYSHEL_06120 putative fructose-bisphosphate aldolase class 1 K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D LYSHEL_03750 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D LYSHEL_17510 gapA; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D LYSHEL_06170 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D LYSHEL_06150 pykA; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D LYSHEL_04370 dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D LYSHEL_16560 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D LYSHEL_28930 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D LYSHEL_23910 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D LYSHEL_28260 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D LYSHEL_05050 tufA_1; elongation factor Tu-A K02358 tuf; elongation factor Tu D LYSHEL_05170 tufA_2; elongation factor Tu-A K02358 tuf; elongation factor Tu D LYSHEL_26360 hypothetical protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D LYSHEL_02450 histidine triad nucleotide-binding protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D LYSHEL_28720 rpfB; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D LYSHEL_00790 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LYSHEL_13090 yfcY; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LYSHEL_03330 peptidase M20 K01283 ACE; peptidyl-dipeptidase A [EC:3.4.15.1] D LYSHEL_17790 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D LYSHEL_16920 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D LYSHEL_01200 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D LYSHEL_01250 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D LYSHEL_08840 metB_1; cystathionine gamma-synthase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1] D LYSHEL_12250 fbp; fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D LYSHEL_13500 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D LYSHEL_11620 hemB; delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D LYSHEL_09260 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D LYSHEL_27840 phhB; putative pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D LYSHEL_03920 phoA; alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D LYSHEL_04480 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D LYSHEL_16420 purH; bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D LYSHEL_30420 ldp; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D LYSHEL_15800 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D LYSHEL_08690 etfA; electron transfer flavoprotein subunit beta K03522 fixB; electron transfer flavoprotein alpha subunit D LYSHEL_22790 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D LYSHEL_25060 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D LYSHEL_06510 blc; outer membrane lipoprotein K03098 APOD; apolipoprotein D and lipocalin family protein C 02048 Prokaryotic defense system [BR:lhx02048] D LYSHEL_10730 DEAD/DEAH box helicase K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] D LYSHEL_10740 restriction endonuclease subunit S K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] D LYSHEL_10750 hsdM; type I restriction-modification system subunit M K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] D LYSHEL_00570 membrane protein K07448 mrr; restriction system protein D LYSHEL_23540 yncN; mRNA interferase K07339 hicA; mRNA interferase HicA [EC:3.1.-.-] D LYSHEL_23530 ydcQ; antitoxin K18843 hicB; antitoxin HicB D LYSHEL_02000 CopG family transcriptional regulator K07746 parD1_3_4; antitoxin ParD1/3/4 D LYSHEL_06020 death-on-curing protein K07341 doc; death on curing protein D LYSHEL_30060 vapC; ribonuclease VapC K07062 fitB; toxin FitB [EC:3.1.-.-] D LYSHEL_30070 hypothetical protein K21495 fitA; antitoxin FitA D LYSHEL_07910 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D LYSHEL_10310 mreB; rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D LYSHEL_21470 parC; DNA topoisomerase 4 subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D LYSHEL_03790 parE; DNA topoisomerase 4 subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D LYSHEL_04410 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D LYSHEL_25260 hypothetical protein K19168 cptA; toxin CptA D LYSHEL_24790 hypothetical protein K09159 cptB; antitoxin CptB C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules [BR:lhx04090] D LYSHEL_03330 peptidase M20 K01283 ACE; peptidyl-dipeptidase A [EC:3.4.15.1] C 01504 Antimicrobial resistance genes [BR:lhx01504] D LYSHEL_13080 tetA; tetracycline resistance MFS efflux pump K08151 tetA; MFS transporter, DHA1 family, tetracycline resistance protein D LYSHEL_21990 hypothetical protein K02172 blaR1; bla regulator protein blaR1 D LYSHEL_31510 hypothetical protein K02172 blaR1; bla regulator protein blaR1 D LYSHEL_22000 BlaI family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D LYSHEL_31500 hypothetical protein K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D LYSHEL_03200 peptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D LYSHEL_01550 ddpX; D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D LYSHEL_08740 hypothetical protein K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D LYSHEL_09470 phoQ; two-component sensor histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D LYSHEL_09480 phoP; DNA-binding response regulator K07660 phoP; two-component system, OmpR family, response regulator PhoP D LYSHEL_06060 MexH family multidrug efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D LYSHEL_16070 acrA; multidrug resistance protein K03585 acrA; membrane fusion protein, multidrug efflux system D LYSHEL_06050 acrF; multidrug transporter K18138 acrB; multidrug efflux pump D LYSHEL_16080 acrB; multidrug efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump D LYSHEL_22490 RND transporter K18139 oprM; outer membrane protein, multidrug efflux system D LYSHEL_24420 oprN; RND transporter K18300 oprN; outer membrane protein, multidrug efflux system D LYSHEL_16760 transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor D LYSHEL_03400 multidrug transporter K18302 mexJ; membrane fusion protein, multidrug efflux system D LYSHEL_16770 resistance-nodulation-cell division efflux membrane fusion protein K18302 mexJ; membrane fusion protein, multidrug efflux system D LYSHEL_03390 resistance-nodulation-cell division efflux transporter K18303 mexK; multidrug efflux pump D LYSHEL_16780 resistance-nodulation-cell division efflux transporter K18303 mexK; multidrug efflux pump D LYSHEL_29220 putative HTH-type transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D LYSHEL_16740 tolC; membrane protein K12340 tolC; outer membrane protein D LYSHEL_19100 DNA-binding response regulator K07690 evgA; two-component system, NarL family, response regulator EvgA C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:lhx00537] D LYSHEL_03920 phoA; alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D LYSHEL_04370 dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:lhx03100] D LYSHEL_t00250 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D LYSHEL_t00280 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D LYSHEL_t00520 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D LYSHEL_t00020 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D LYSHEL_t00400 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D LYSHEL_t00230 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D LYSHEL_t00100 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D LYSHEL_t00410 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D LYSHEL_t00320 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D LYSHEL_t00050 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D LYSHEL_t00470 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D LYSHEL_t00190 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D LYSHEL_t00170 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D LYSHEL_t00510 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D LYSHEL_t00420 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D LYSHEL_t00460 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D LYSHEL_t00300 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D LYSHEL_t00150 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D LYSHEL_t00090 tRNA-His K14226 tRNA-His; tRNA His D LYSHEL_t00260 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D LYSHEL_t00290 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D LYSHEL_t00360 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D LYSHEL_t00440 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D LYSHEL_t00480 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D LYSHEL_t00070 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D LYSHEL_t00540 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D LYSHEL_t00180 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D LYSHEL_t00080 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D LYSHEL_t00270 tRNA-Met K14230 tRNA-Met; tRNA Met D LYSHEL_t00450 tRNA-Met K14230 tRNA-Met; tRNA Met D LYSHEL_t00210 tRNA-Met K14230 tRNA-Met; tRNA Met D LYSHEL_t00350 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D LYSHEL_t00010 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D LYSHEL_t00110 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D LYSHEL_t00340 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D LYSHEL_t00040 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D LYSHEL_t00390 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D LYSHEL_t00030 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D LYSHEL_t00500 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D LYSHEL_t00140 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D LYSHEL_t00200 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D LYSHEL_t00380 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D LYSHEL_t00130 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D LYSHEL_t00160 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D LYSHEL_t00060 tRNA-Val K14237 tRNA-Val; tRNA Val D LYSHEL_t00490 tRNA-Val K14237 tRNA-Val; tRNA Val D LYSHEL_t00330 tRNA-Val K14237 tRNA-Val; tRNA Val D LYSHEL_r00010 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D LYSHEL_r00040 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D LYSHEL_r00020 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D LYSHEL_r00050 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D LYSHEL_r00030 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D LYSHEL_r00060 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D LYSHEL_tm00010 transfer-messenger RNA K15035 ssrA; transfer-messenger RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D LYSHEL_13940 NADP-dependent 3-hydroxy acid dehydrogenase K05886 sdh; serine 3-dehydrogenase (NADP+) [EC:1.1.1.276] D LYSHEL_13670 cdh; 3-beta hydroxysteroid dehydrogenase K22320 oleD; 2-alkyl-3-oxoalkanoate reductase [EC:1.1.1.412] D LYSHEL_24500 hypothetical protein K21430 yliI; aldose sugar dehydrogenase [EC:1.1.5.-] D LYSHEL_13350 iorA; indolepyruvate ferredoxin oxidoreductase K04090 E1.2.7.8; indolepyruvate ferredoxin oxidoreductase [EC:1.2.7.8] D LYSHEL_04590 fadH; NADPH-dependent 2,4-dienoyl-CoA reductase K00219 fadH; 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34] D LYSHEL_08610 etf-QO; electron transfer flavoprotein K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1] D LYSHEL_26040 qor; alcohol dehydrogenase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D LYSHEL_27530 azoR2; FMN-dependent NADH-azoreductase 2 K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17] D LYSHEL_19570 msrA; peptide methionine sulfoxide reductase MsrA K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D LYSHEL_05770 msrB; peptide methionine sulfoxide reductase MsrB K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] D LYSHEL_00720 thiol:disulfide oxidoreductase K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-] D LYSHEL_27460 msrP; protein-methionine-sulfoxide reductase catalytic subunit MsrP K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-] D LYSHEL_01820 cpo; non-heme chloroperoxidase K00433 cpo; non-heme chloroperoxidase [EC:1.11.1.10] D LYSHEL_23810 peroxiredoxin K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D LYSHEL_06850 peroxiredoxin K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28] D LYSHEL_19000 osmC; peroxiredoxin K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28] D LYSHEL_05600 ahpD; alkyl hydroperoxide reductase AhpD K04756 ahpD; lipoyl-dependent peroxiredoxin subunit D [EC:1.11.1.28] D LYSHEL_05610 alkyl hydroperoxide reductase K24126 ahpC; lipoyl-dependent peroxiredoxin subunit C [EC:1.11.1.28] D LYSHEL_03030 hypothetical protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D LYSHEL_16670 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D LYSHEL_30870 cysteine dioxygenase K24700 mdo; 3-mercaptopropionate dioxygenase [EC:1.13.11.91] D LYSHEL_24370 fpr; ferredoxin--NADP(+) reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D LYSHEL_25850 arsenate reductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1] D LYSHEL_22600 arsC; low molecular weight phosphatase family protein K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4] D LYSHEL_29260 arsenate reductase K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4] D LYSHEL_29270 low molecular weight phosphotyrosine protein phosphatase K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4] D LYSHEL_03340 hypothetical protein K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D LYSHEL_03680 pcm_1; protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D LYSHEL_16750 pcm_2; protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D LYSHEL_31020 cfa; cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] D LYSHEL_06480 cfaA; cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] D LYSHEL_06500 cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] D LYSHEL_06790 N-acetyltransferase K22441 paiA; diamine N-acetyltransferase [EC:2.3.1.57] D LYSHEL_00920 N-acetyltransferase K03828 yjgM; putative acetyltransferase [EC:2.3.1.-] D LYSHEL_28620 aat; leucyl/phenylalanyl-tRNA--protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6] D LYSHEL_02430 membrane protein K22452 tgpA; protein-glutamine gamma-glutamyltransferase [EC:2.3.2.13] D LYSHEL_03120 ate; putative arginyl-tRNA--protein transferase K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29] D LYSHEL_13640 fabH_3; 3-oxoacyl-ACP synthase III K22317 oleA; acyl-CoA:acyl-CoA alkyltransferase [EC:2.3.3.20] D LYSHEL_05880 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D LYSHEL_28340 putative phosphoenolpyruvate synthase regulatory protein K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33] D LYSHEL_16630 glnE; glutamate-ammonia-ligase adenylyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89] D LYSHEL_31180 UPF0061 protein K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108] D LYSHEL_18540 hprK; HPr kinase/phosphorylase K06023 hprK; HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-] D LYSHEL_06090 ymdB; RNase III inhibitor K23518 MACROD; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106] D LYSHEL_07390 tol-pal system-associated acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D LYSHEL_23220 thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D LYSHEL_27680 hypothetical protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D LYSHEL_13380 phosphoglycerate mutase K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-] D LYSHEL_12530 mttC; preprotein translocase subunit TatD K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D LYSHEL_24650 hypothetical protein K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D LYSHEL_03080 N-acetylmuramoyl-L-alanine amidase K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D LYSHEL_10570 def2; peptide deformylase 2 K01462 PDF; peptide deformylase [EC:3.5.1.88] D LYSHEL_02390 Maf-like protein K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-] D LYSHEL_02410 moxR_1; ATPase AAA K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D LYSHEL_11660 ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D LYSHEL_17370 moxR_2; ATPase AAA K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D LYSHEL_13650 dhaA; haloalkane dehalogenase K22318 oleB; cis-3-alkyl-4-acyloxetan-2-one decarboxylase [EC:4.1.1.114] D LYSHEL_23930 bifunctional NAD(P)H-hydrate repair enzyme K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6] D LYSHEL_03970 peptidyl-prolyl cis-trans isomerase K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8] D LYSHEL_23160 peptidyl-prolyl cis-trans isomerase K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8] D LYSHEL_00670 icmF; Fused isobutyryl-CoA mutase K11942 icmF; isobutyryl-CoA mutase [EC:5.4.99.13] D LYSHEL_13660 peptide synthase K22319 oleC; olefin beta-lactone synthetase [EC:6.1.3.1] D LYSHEL_16930 mpl; UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45] D LYSHEL_23990 ydgM; ferredoxin K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2] D LYSHEL_27640 cation-transporting P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9] C 99981 Carbohydrate metabolism C 99982 Energy metabolism D LYSHEL_23850 ferredoxin K05524 fdxA; ferredoxin D LYSHEL_08680 etfB; electron transfer flavoprotein subunit beta K03521 fixA; electron transfer flavoprotein beta subunit D LYSHEL_22530 hypothetical protein K09165 K09165; dodecin C 99983 Lipid metabolism D LYSHEL_02070 acyl-CoA dehydrogenase K09456 aidB; putative acyl-CoA dehydrogenase C 99984 Nucleotide metabolism C 99985 Amino acid metabolism D LYSHEL_18410 YggS family pyridoxal phosphate enzyme K06997 yggS; PLP dependent protein D LYSHEL_01220 argA; N-acetyltransferase K22479 argA; N-acetyltransferase C 99986 Glycan metabolism D LYSHEL_28010 hypothetical protein K08992 lapA; lipopolysaccharide assembly protein A D LYSHEL_28020 lapB; lipopolysaccharide assembly protein B K19804 lapB; lipopolysaccharide assembly protein B D LYSHEL_31280 membrane protein K07027 K07027; glycosyltransferase 2 family protein C 99987 Cofactor metabolism D LYSHEL_11310 hemY; porphyrin biosynthesis protein K02498 hemY; HemY protein D LYSHEL_13690 ubiB; putative protein kinase UbiB K03688 ubiB; ubiquinone biosynthesis protein D LYSHEL_13680 sterol-binding protein K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ D LYSHEL_13900 hypothetical protein K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK D LYSHEL_21180 aminobenzoyl-glutamate transporter K12942 abgT; aminobenzoyl-glutamate transport protein C 99988 Secondary metabolism D LYSHEL_31470 oxidoreductase K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone) D LYSHEL_07030 FMN reductase K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone) C 99999 Others D LYSHEL_04150 GntR family transcriptional regulator K15977 K15977; putative oxidoreductase D LYSHEL_21350 quinol oxidase K15977 K15977; putative oxidoreductase D LYSHEL_26330 LysR family transcriptional regulator K15977 K15977; putative oxidoreductase D LYSHEL_28380 hypothetical protein K15977 K15977; putative oxidoreductase D LYSHEL_10960 carboxylesterase K06999 K06999; phospholipase/carboxylesterase B B 09192 Unclassified: genetic information processing C 99973 Transcription D LYSHEL_31040 cspA_2; cold-shock protein K03704 cspA; cold shock protein D LYSHEL_02080 scoF; cold-shock protein K03704 cspA; cold shock protein D LYSHEL_24600 cspA_1; cold-shock protein K03704 cspA; cold shock protein C 99974 Translation D LYSHEL_20780 MBL fold metallo-hydrolase K07576 K07576; metallo-beta-lactamase family protein D LYSHEL_15410 DNA ligase-associated DEXH box helicase K07577 K07577; putative mRNA 3-end processing factor C 99975 Protein processing D LYSHEL_28650 clpS; ATP-dependent Clp protease adapter protein ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS D LYSHEL_02700 tig; trigger factor K03545 tig; trigger factor D LYSHEL_27450 msrQ; protein-methionine-sulfoxide reductase heme-binding subunit MsrQ K17247 msrQ; methionine sulfoxide reductase heme-binding subunit D LYSHEL_29010 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein D LYSHEL_13890 comM; ATP-dependent protease K07391 comM; magnesium chelatase family protein D LYSHEL_20730 hypothetical protein K07394 K07394; SM-20-related protein D LYSHEL_27850 nfuA; Fe/S biogenesis protein NfuA K07400 nfuA; Fe/S biogenesis protein NfuA C 99976 Replication and repair D LYSHEL_20720 methylated-DNA--protein-cysteine methyltransferase K07443 ybaZ; methylated-DNA-protein-cysteine methyltransferase related protein D LYSHEL_13980 UPF0758 protein K03630 radC; DNA repair protein RadC D LYSHEL_12870 hypothetical protein K09760 rmuC; DNA recombination protein RmuC D LYSHEL_08080 UPF0102 protein K07460 yraN; putative endonuclease D LYSHEL_10550 smf; DNA processing protein DprA K04096 smf; DNA processing protein D LYSHEL_28560 recombination factor protein RarA K07478 ycaJ; putative ATPase C 99979 Viral proteins C 99998 Others D LYSHEL_02470 nucleoid-associated protein K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D LYSHEL_00970 yhdG_1; amino acid transporter K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D LYSHEL_03360 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D LYSHEL_25250 yhdG_2; amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D LYSHEL_27900 acrD_1; transporter K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family D LYSHEL_27910 acrD_2; transporter K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family D LYSHEL_18000 MFS transporter K03301 TC.AAA; ATP:ADP antiporter, AAA family D LYSHEL_09280 yhiP; dihydroorotate dehydrogenase K03305 TC.POT; proton-dependent oligopeptide transporter, POT family D LYSHEL_10860 MFS transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family D LYSHEL_19190 ygdR; oligopeptide transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family D LYSHEL_19630 MFS transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family D LYSHEL_20700 pitA; phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family D LYSHEL_17430 gltP; proton glutamate symport protein K03309 TC.DAACS; dicarboxylate/amino acid:cation (Na+ or H+) symporter, DAACS family D LYSHEL_17840 yeiM; nucleoside transporter K03317 TC.CNT; concentrative nucleoside transporter, CNT family C 99978 Cell growth D LYSHEL_14160 peptidase M23 K22719 envC; murein hydrolase activator C 99993 Cell motility D LYSHEL_04070 competence protein TfoX K07343 tfoX; DNA transformation protein and related proteins D LYSHEL_20880 yadV; putative fimbrial chaperone YadV K15540 ecpD; chaperone protein EcpD C 99995 Signaling proteins D LYSHEL_16340 membrane protein K03807 ampE; AmpE protein D LYSHEL_19750 cstA; carbon starvation protein A K06200 cstA; carbon starvation protein D LYSHEL_04720 typA; GTP-binding elongation factor protein K06207 typA; GTP-binding protein D LYSHEL_19800 ATP-binding protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins D LYSHEL_23800 hypothetical protein K07175 phoH2; PhoH-like ATPase D LYSHEL_03460 circadian clock protein KaiC K08482 kaiC; circadian clock protein KaiC D LYSHEL_22710 circadian clock protein KaiC K08482 kaiC; circadian clock protein KaiC C 99992 Structural proteins D LYSHEL_28570 lolA; outer-membrane lipoprotein carrier protein K03634 lolA; outer membrane lipoprotein carrier protein D LYSHEL_05230 lolB; outer-membrane lipoprotein LolB K02494 lolB; outer membrane lipoprotein LolB D LYSHEL_12880 hypothetical protein K04754 mlaA; phospholipid-binding lipoprotein MlaA D LYSHEL_24620 pcp; hypothetical protein K06077 slyB; outer membrane lipoprotein SlyB D LYSHEL_03660 nlpD; lipoprotein K06194 nlpD; lipoprotein NlpD D LYSHEL_15760 ompW; membrane protein K07275 ompW; outer membrane protein D LYSHEL_02440 slp; membrane protein K07285 slp; outer membrane lipoprotein D LYSHEL_18170 membrane protein K07290 yhjG; AsmA family protein D LYSHEL_17920 membrane protein K07340 ybbJ; inner membrane protein D LYSHEL_19820 membrane protein K01993 ABC-2.TX; HlyD family secretion protein D LYSHEL_05980 hypothetical protein K02005 ABC.CD.TX; HlyD family secretion protein D LYSHEL_15970 ybjY; ABC transporter permease K02005 ABC.CD.TX; HlyD family secretion protein D LYSHEL_02920 creD; cell envelope integrity protein CreD K06143 creD; inner membrane protein D LYSHEL_30810 ccmE2; cytochrome c-type biogenesis protein CcmE 2 K02197 ccmE; cytochrome c-type biogenesis protein CcmE D LYSHEL_30840 cycL; cytochrome c biogenesis protein K02200 ccmH; cytochrome c-type biogenesis protein CcmH D LYSHEL_30850 cycH; cytochrome c biogenesis protein K02200 ccmH; cytochrome c-type biogenesis protein CcmH D LYSHEL_28140 membrane protein K15539 rodZ; cytoskeleton protein RodZ C 99994 Others D LYSHEL_23060 phoU; phosphate transport system regulatory protein PhoU K02039 phoU; phosphate transport system protein D LYSHEL_16250 bacterioferritin-associated ferredoxin K02192 bfd; bacterioferritin-associated ferredoxin D LYSHEL_25410 ygjT; membrane protein K05794 terC; tellurite resistance protein TerC D LYSHEL_16530 cutA; divalent cation tolerance protein K03926 cutA; periplasmic divalent cation tolerance protein D LYSHEL_05820 apaG; protein ApaG K06195 apaG; ApaG protein D LYSHEL_15030 pcoB; copper resistance protein B K07233 pcoB; copper resistance protein B D LYSHEL_29150 copper resistance protein B K07233 pcoB; copper resistance protein B D LYSHEL_07260 hypothetical protein K07234 K07234; uncharacterized protein involved in response to NO B B 09194 Poorly characterized C 99996 General function prediction only D LYSHEL_31200 helicase K06877 K06877; DEAD/DEAH box helicase domain-containing protein D LYSHEL_05850 plpD; patatin K07001 K07001; NTE family protein D LYSHEL_11040 hypothetical protein K07001 K07001; NTE family protein D LYSHEL_09610 haloacid dehalogenase K07025 K07025; putative hydrolase of the HAD superfamily D LYSHEL_16320 erpA; iron-sulfur cluster insertion protein ErpA K15724 erpA; iron-sulfur cluster insertion protein D LYSHEL_18890 ynhE; Fe-S cluster assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB D LYSHEL_18870 ynhC; Fe-S cluster assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD D LYSHEL_17810 membrane protein K07038 K07038; inner membrane protein D LYSHEL_05330 UPF0761 membrane protein K07058 K07058; membrane protein D LYSHEL_25750 rbn; hypothetical protein K07058 K07058; membrane protein D LYSHEL_01290 hypothetical protein K02426 sufE; cysteine desulfuration protein SufE D LYSHEL_28690 hflD; high frequency lysogenization protein HflD K07153 hflD; high frequency lysogenization protein D LYSHEL_00080 glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein K04750 phnB; PhnB protein D LYSHEL_05940 glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein K04750 phnB; PhnB protein D LYSHEL_26440 putative glyoxalase/bleomycin resistance protein K04750 phnB; PhnB protein D LYSHEL_05910 hypothetical protein K03744 lemA; LemA protein D LYSHEL_17970 hypothetical protein K03744 lemA; LemA protein D LYSHEL_30270 slyX; protein SlyX K03745 slyX; SlyX protein D LYSHEL_10540 smg; protein Smg K03747 smg; Smg protein D LYSHEL_22330 hypothetical protein K00389 yidH; putative membrane protein D LYSHEL_10630 membrane protein K08981 K08981; putative membrane protein D LYSHEL_30880 hypothetical protein K08983 K08983; putative membrane protein D LYSHEL_12810 membrane protein K08984 yjdF; putative membrane protein D LYSHEL_18020 membrane protein K08987 K08987; putative membrane protein D LYSHEL_09830 DUF350 domain-containing protein K08989 K08989; putative membrane protein D LYSHEL_16180 hypothetical protein K08995 K08995; putative membrane protein D LYSHEL_31120 hypothetical protein K09914 K09914; putative lipoprotein D LYSHEL_25870 phosphonoacetate hydrolase K06193 phnA; protein PhnA C 99997 Function unknown D LYSHEL_13260 ank2; hypothetical protein K06867 K06867; uncharacterized protein D LYSHEL_05900 hypothetical protein K06872 K06872; uncharacterized protein D LYSHEL_10490 hypothetical protein K06884 K06884; uncharacterized protein D LYSHEL_16190 hypothetical protein K06884 K06884; uncharacterized protein D LYSHEL_28230 hypothetical protein K06889 K06889; uncharacterized protein D LYSHEL_00390 baseplate protein K06903 W; Bacteriophage baseplate protein W D LYSHEL_00420 hypothetical protein K06905 D; Bacteriophage probable baseplate hub protein D LYSHEL_00490 tail protein K06907 FI; Bacteriophage tail sheath protein D LYSHEL_23170 hypothetical protein K06938 K06938; uncharacterized protein D LYSHEL_15380 phosphoesterase K06953 K06953; uncharacterized protein D LYSHEL_06460 dehydrogenase K06954 K06954; uncharacterized protein D LYSHEL_31060 N-acetyltransferase K06975 K06975; uncharacterized protein D LYSHEL_03280 hypothetical protein K06977 K06977; uncharacterized protein D LYSHEL_11960 GNAT family acetyltransferase K06977 K06977; uncharacterized protein D LYSHEL_19440 glyoxalase K06996 K06996; uncharacterized protein D LYSHEL_09300 nuclease K07004 K07004; uncharacterized protein D LYSHEL_12680 alpha/beta hydrolase K07018 K07018; uncharacterized protein D LYSHEL_13440 alpha/beta hydrolase K07019 K07019; uncharacterized protein D LYSHEL_18740 UPF0721 transmembrane protein K07090 K07090; uncharacterized protein D LYSHEL_19360 hypothetical protein K07112 K07112; uncharacterized protein D LYSHEL_19370 hypothetical protein K07112 K07112; uncharacterized protein D LYSHEL_18920 SET domain-containing protein-lysine N-methyltransferase K07117 K07117; uncharacterized protein D LYSHEL_08070 hypothetical protein K07121 K07121; uncharacterized protein D LYSHEL_26030 hypothetical protein K07137 K07137; uncharacterized protein D LYSHEL_03840 yxaH; transporter K07148 K07148; uncharacterized protein D LYSHEL_16940 ATP-dependent protease K07157 K07157; uncharacterized protein D LYSHEL_01320 putative membrane protein insertion efficiency factor K08998 K08998; uncharacterized protein D LYSHEL_17030 hypothetical protein K09005 K09005; uncharacterized protein D LYSHEL_14340 hypothetical protein K09117 K09117; uncharacterized protein D LYSHEL_10220 UPF0250 protein K09158 K09158; uncharacterized protein D LYSHEL_23970 hypothetical protein K09164 K09164; uncharacterized protein D LYSHEL_10640 membrane protein K09167 K09167; uncharacterized protein D LYSHEL_06470 DUF1365 domain-containing protein K09701 K09701; uncharacterized protein D LYSHEL_30680 hypothetical protein K09780 K09780; uncharacterized protein D LYSHEL_27660 hypothetical protein K09792 K09792; uncharacterized protein D LYSHEL_24590 membrane protein K09793 K09793; uncharacterized protein D LYSHEL_28990 UPF0125 protein K09801 K09801; uncharacterized protein D LYSHEL_21010 bp26; SIMPL domain-containing protein K09807 K09807; uncharacterized protein D LYSHEL_17130 UPF0149 protein K09895 K09895; uncharacterized protein D LYSHEL_13270 YcgL domain-containing protein K09902 K09902; uncharacterized protein D LYSHEL_26200 hypothetical protein K09912 K09912; uncharacterized protein D LYSHEL_28610 hypothetical protein K09919 K09919; uncharacterized protein D LYSHEL_28350 hypothetical protein K09920 K09920; uncharacterized protein D LYSHEL_11100 hypothetical protein K09921 K09921; uncharacterized protein D LYSHEL_06010 hypothetical protein K09922 K09922; uncharacterized protein D LYSHEL_28400 UPF0276 protein K09930 K09930; uncharacterized protein D LYSHEL_18690 hypothetical protein K09938 K09938; uncharacterized protein D LYSHEL_21090 hypothetical protein K09940 K09940; uncharacterized protein D LYSHEL_15730 hypothetical protein K09941 K09941; uncharacterized protein D LYSHEL_28240 cell division protein DedD K09948 K09948; uncharacterized protein D LYSHEL_23980 TraB/GumN family protein K09973 K09973; uncharacterized protein D LYSHEL_18810 hypothetical protein K09975 K09975; uncharacterized protein D LYSHEL_00110 hypothetical protein K09981 K09981; uncharacterized protein D LYSHEL_09670 hypothetical protein K09983 K09983; uncharacterized protein D LYSHEL_10130 hypothetical protein K09984 K09984; uncharacterized protein D LYSHEL_31210 hypothetical protein K07502 yprB; uncharacterized protein D LYSHEL_20690 hypothetical protein K07220 K07220; uncharacterized protein D LYSHEL_16640 nucleoside-diphosphate sugar epimerase K07276 K07276; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 25, 2024