+F Repair protein KO #

  DNA Repair and Recombination Proteins - Lactococcus lactis subsp. lactis KF147

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D LLKF_0509 ogt; O6-methylguanine-DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E LLKF_0228 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E LLKF_0854 mutY; A/G-specific adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E LLKF_1099 nth; Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D LLKF_2499 yxbC; Hydrolase, MutT/nudix family K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LLKF_1147 mutX; Phosphohydrolase, MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LLKF_0171 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D LLKF_1513 pp247; Phage protein, dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D LLKF_0509 ogt; O6-methylguanine-DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D LLKF_0510 adaA; Methylphosphotriester-DNA alkyltransferase K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-] C BER (base exicision repair) D DNA glycosylases E LLKF_0228 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E LLKF_0854 mutY; A/G-specific adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E LLKF_1148 tag; DNA-3-methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E LLKF_0408 mutM; Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E LLKF_1099 nth; Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E LLKF_0811 exoA; Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E LLKF_0626 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E LLKF_0471 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E LLKF_2390 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E LLKF_2011 uvrA; Excinuclease ABC, subunit A K03701 uvrA; excinuclease ABC subunit A E LLKF_0540 uvrB; Excinuclease ABC, subunit B K03702 uvrB; excinuclease ABC subunit B E LLKF_0853 uvrC; Excinuclease ABC, subunit C K03703 uvrC; excinuclease ABC subunit C E LLKF_1146 pcrA; ATP-dependent DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LLKF_2390 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E LLKF_0471 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F LLKF_1973 rpoB; DNA-directed RNA polymerase, beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F LLKF_1972 rpoC; DNA-directed RNA polymerase, beta prime chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F LLKF_2321 rpoA; DNA-directed RNA polymerase, alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F LLKF_0628 rpoE; DNA-directed RNA polymerase, delta chain K03048 rpoE; DNA-directed RNA polymerase subunit delta F LLKF_2091 rpoZ; DNA-directed RNA polymerase, omega chain K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F LLKF_0014 mfd; Transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E LLKF_2482 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E LLKF_1802 mutS; DNA mismatch repair protein MutS K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E LLKF_2480 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E LLKF_0873 xseA; Exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E LLKF_0874 xseB; Exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E LLKF_0500 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E LLKF_2374 polC; DNA polymerase III, alpha subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E LLKF_0002 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E LLKF_1811 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E LLKF_0451 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E LLKF_1011 dnaQ; DNA polymerase III, epsilon chain K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E LLKF_2439 dnaH; DNA polymerase III subunit, gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E LLKF_0471 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E LLKF_1146 pcrA; ATP-dependent DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LLKF_0444 ssbA; Single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein E LLKF_2435 ssbB; Single strand binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E LLKF_1911 recD; Exodeoxyribonuclease V, alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E LLKF_0409 recA; DNA-dependent recombination protein RecA, ATPase, AAA family K03553 recA; recombination protein RecA E LLKF_1284 recA; Recombinase RecA, C-terminal fragement K03553 recA; recombination protein RecA E LLKF_2479 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E LLKF_2478 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E LLKF_2090 priA; Primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E LLKF_1410 sbcC; Exonuclease, subunit C K03546 sbcC; DNA repair protein SbcC/Rad50 E LLKF_1411 sbcD; Exonuclease, subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E LLKF_0409 recA; DNA-dependent recombination protein RecA, ATPase, AAA family K03553 recA; recombination protein RecA E LLKF_1284 recA; Recombinase RecA, C-terminal fragement K03553 recA; recombination protein RecA E LLKF_2309 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E LLKF_2159 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E LLKF_2512 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E LLKF_0626 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E LLKF_0033 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E LLKF_0395 recR; Recombination protein recR K06187 recR; recombination protein RecR E LLKF_0880 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E LLKF_0522 recU; Recombination protein RecU K03700 recU; recombination protein U E LLKF_2479 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E LLKF_2478 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E LLKF_0004 rexA; ATP-dependent nuclease, subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E LLKF_0003 rexB; ATP-dependent nuclease, subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E LLKF_1410 sbcC; Exonuclease, subunit C K03546 sbcC; DNA repair protein SbcC/Rad50 E LLKF_1411 sbcD; Exonuclease, subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F LLKF_1138 gyrA; DNA gyrase, subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F LLKF_0933 gyrB; DNA gyrase, subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F LLKF_1274 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F LLKF_0506 hslA; DNA-binding protein HU, histone-like protein K03530 hupB; DNA-binding protein HU-beta F LLKF_0901 hslB; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F LLKF_1526 pp260; Phage protein K07455 recT; recombination protein RecT F LLKF_0626 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F LLKF_0033 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F LLKF_0395 recR; Recombination protein recR K06187 recR; recombination protein RecR F LLKF_0471 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F LLKF_1982 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F LLKF_2011 uvrA; Excinuclease ABC, subunit A K03701 uvrA; excinuclease ABC subunit A F LLKF_0540 uvrB; Excinuclease ABC, subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D LLKF_2215 dinP; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D LLKF_0567 umuC; ImpB/MucB/SamB family protein K03502 umuC; DNA polymerase V D LLKF_p0005 hypothetical protein K03502 umuC; DNA polymerase V C Other SOS response factors D LLKF_0409 recA; DNA-dependent recombination protein RecA, ATPase, AAA family K03553 recA; recombination protein RecA D LLKF_1284 recA; Recombinase RecA, C-terminal fragement K03553 recA; recombination protein RecA D LLKF_0880 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D LLKF_0444 ssbA; Single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein D LLKF_2435 ssbB; Single strand binding protein K03111 ssb; single-strand DNA-binding protein D LLKF_2427 recX; Regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D LLKF_2024 dinG; ATP-dependent DNA helicase/DNA polymerase III, epsilon subunit K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D LLKF_2499 yxbC; Hydrolase, MutT/nudix family K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LLKF_1147 mutX; Phosphohydrolase, MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LLKF_0171 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D LLKF_1513 pp247; Phage protein, dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D LLKF_1004 nrdE; Ribonucleoside-diphosphate reductase, alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D LLKF_1003 nrdF; Ribonucleoside-diphosphate reductase, beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D LLKF_0755 yheB; Phosphoesterase, DHH family K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024