+F Repair protein KO
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DNA Repair and Recombination Proteins - Lactuca sativa (garden lettuce)
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D 111915311 DNA oxidative demethylase ALKBH2 K10859 ALKBH2; DNA oxidative demethylase [EC:1.14.11.33]
D 111908264 DExH-box ATP-dependent RNA helicase DExH14 K18663 ASCC3; activating signal cointegrator complex subunit 3 [EC:5.6.2.4]
D 111918760 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E 111906635 uracil-DNA glycosylase, mitochondrial K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E 111920997 LOW QUALITY PROTEIN: DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E 111886675 adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E 111877396 uncharacterized protein LOC111877396 isoform X1 K10801 MBD4; methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
E 111895683 N-glycosylase/DNA lyase OGG1 K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
E 111915003 endonuclease III homolog 1, chloroplastic isoform X1 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 111877946 putative DNA glycosylase At3g47830 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E 111881139 DNA-(apurinic or apyrimidinic site) endonuclease 2 isoform X1 K10772 APEX2; AP endonuclease 2 [EC:3.1.11.2]
D Long Patch-BER factors
E DNA polymerase delta complex
F 111897619 DNA polymerase delta catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F 111908879 DNA polymerase delta small subunit K02328 POLD2; DNA polymerase delta subunit 2
F 111913871 uncharacterized protein LOC111913871 K03504 POLD3; DNA polymerase delta subunit 3
F 111921207 uncharacterized protein LOC111921207 K03505 POLD4; DNA polymerase delta subunit 4
E DNA polymerase epsilon complex
F 111905407 DNA polymerase epsilon catalytic subunit A K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
F 111896626 DNA polymerase epsilon catalytic subunit A K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
F 111893810 DNA polymerase epsilon subunit B K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
F 111917504 DNA polymerase II subunit B4 K02326 POLE3; DNA polymerase epsilon subunit 3 [EC:2.7.7.7]
F 111881072 DNA polymerase II subunit B3-1 K03506 POLE4; DNA polymerase epsilon subunit 4 [EC:2.7.7.7]
E 111919730 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 111916510 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 111880340 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 111892034 flap endonuclease 1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E 111886023 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Short Patch-BER factors
E 111918950 DNA-repair protein XRCC1 K10803 XRCC1; DNA-repair protein XRCC1
D Other BER factors
E 111891697 tyrosyl-DNA phosphodiesterase 1 K10862 TDP1; tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
E 111908638 transcription factor bHLH140 K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E 111893408 polynucleotide 3'-phosphatase ZDP K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78]
E 111886150 DNA polymerase lambda K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
E 111881230 poly [ADP-ribose] polymerase 1 K24070 PARP1; poly [ADP-ribose] polymerase 1 [EC:2.4.2.30]
E 111892784 poly [ADP-ribose] polymerase 2 K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
E 111905390 protein ADP-ribosyltransferase PARP3 K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
F 111883388 DNA repair protein RAD4 K10838 XPC; xeroderma pigmentosum group C-complementing protein
F 111892307 ubiquitin receptor RAD23b K10839 RAD23; UV excision repair protein RAD23
F 111904551 ubiquitin receptor RAD23d K10839 RAD23; UV excision repair protein RAD23
F 111916844 ubiquitin receptor RAD23d K10839 RAD23; UV excision repair protein RAD23
E Cul4-DDB2 complex
F 111892622 RING-box protein 1a K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 111902717 RING-box protein 1a K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 111882147 RING-box protein 1a K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 111880852 cullin-4 K10609 CUL4; cullin 4
F 111880704 DNA damage-binding protein 1 K10610 DDB1; DNA damage-binding protein 1
F 111912535 protein DAMAGED DNA-BINDING 2 K10140 DDB2; DNA damage-binding protein 2
E NER4 complex
F 111905282 uncharacterized protein LOC111905282 K15082 RAD7; DNA repair protein RAD7
F 111905656 DNA repair protein RAD16 K15083 RAD16; DNA repair protein RAD16
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
F 111916783 DNA-directed RNA polymerase II subunit RPB1 K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F 111892690 DNA-directed RNA polymerase II subunit RPB2 K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F 111892691 DNA-directed RNA polymerase II subunit RPB2 K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F 111903175 DNA-directed RNA polymerases II, IV and V subunit 3 K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
F 111895435 DNA-directed RNA polymerases IV and V subunit 4 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 111918901 DNA-directed RNA polymerase II subunit 4 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 111914768 DNA-directed RNA polymerase V subunit 5C K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 111910305 DNA-directed RNA polymerases II and IV subunit 5A K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 111907076 DNA-directed RNA polymerases II and IV subunit 5A K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 111904100 DNA-directed RNA polymerase V subunit 5A K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 111887390 DNA-directed RNA polymerases II and IV subunit 5A K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 111918586 DNA-directed RNA polymerases II, IV and V subunit 6A K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F 111904147 DNA-directed RNA polymerases II and V subunit 6B K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F 111887592 DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F 111898203 DNA-directed RNA polymerases II and V subunit 8A K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F 111903462 DNA-directed RNA polymerases II, IV and V subunit 8B isoform X1 K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F 111914160 DNA-directed RNA polymerases II, IV and V subunit 9A K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F 111907648 DNA-directed RNA polymerases I, II, and III subunit RPABC5 K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F 111885589 DNA-directed RNA polymerases I, II, and III subunit RPABC5 K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F 111908305 DNA-directed RNA polymerases II, IV and V subunit 11 K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
F 122194389 DNA-directed RNA polymerases II, IV and V subunit 12 K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
F 111917443 DNA-directed RNA polymerases II, IV and V subunit 12-like K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E Cul4-CSA complex
F 111892622 RING-box protein 1a K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 111902717 RING-box protein 1a K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 111882147 RING-box protein 1a K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 111880852 cullin-4 K10609 CUL4; cullin 4
F 111880704 DNA damage-binding protein 1 K10610 DDB1; DNA damage-binding protein 1
F 111893136 WD repeat-containing protein ATCSA-1 K10570 ERCC8; DNA excision repair protein ERCC-8
E Other TCR factor
F 111881308 protein CHROMATIN REMODELING 8 K10841 ERCC6; DNA excision repair protein ERCC-6
F 111894635 UV-stimulated scaffold protein A homolog K23720 UVSSA; UV-stimulated scaffold protein A
D TFIIH complex
E 111886486 general transcription and DNA repair factor IIH helicase subunit XPB1 K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E 111886381 general transcription and DNA repair factor IIH helicase subunit XPD K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E 111881087 general transcription and DNA repair factor IIH subunit TFB1-3 K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E 111882703 general transcription and DNA repair factor IIH subunit TFB1-3 isoform X1 K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E 111877504 general transcription factor IIH subunit 2 K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E 111895843 general transcription and DNA repair factor IIH subunit TFB4 K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E 111917253 general transcription and DNA repair factor IIH subunit TFB2 K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E 111918753 general transcription and DNA repair factor IIH subunit TFB5 K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E 111884845 cyclin-dependent kinase D-3 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 111909597 cyclin-H1-1 K06634 CCNH; cyclin H
E 111911876 uncharacterized protein LOC111911876 K10842 MNAT1; CDK-activating kinase assembly factor MAT1
D RPA (replication factor A)
E 111892538 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 111905201 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 111910499 replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 111892174 replication protein A 32 kDa subunit A K10739 RFA2; replication factor A2
E 111909598 replication protein A 32 kDa subunit B K10739 RFA2; replication factor A2
E 111920046 replication protein A 32 kDa subunit B K10739 RFA2; replication factor A2
E 111897084 replication protein A 14 kDa subunit B K10740 RPA3; replication factor A3
D Other NER factors
E 111918914 DNA excision repair protein ERCC-1 K10849 ERCC1; DNA excision repair protein ERCC-1
E 111907385 DNA repair endonuclease UVH1 isoform X1 K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E 111876446 DNA repair protein UVH3 K10846 ERCC5; DNA excision repair protein ERCC-5
E 111886023 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E 111877073 MMS19 nucleotide excision repair protein homolog isoform X1 K15075 MET18; DNA repair/transcription protein MET18/MMS19
E 111921600 cullin-3A K03869 CUL3; cullin 3
E 111879062 cullin-3A K03869 CUL3; cullin 3
E 111907254 uncharacterized protein LOC111907254 K03872 ELOC; elongin-C
E 111904126 polyubiquitin 9 K03873 ELOB; elongin-B
E 111902470 uncharacterized protein LOC111902470 K15077 ELA1; elongin-A
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E 111915654 DNA mismatch repair protein MSH2 K08735 MSH2; DNA mismatch repair protein MSH2
E 111887335 DNA mismatch repair protein MSH3 K08736 MSH3; DNA mismatch repair protein MSH3
E 111882195 DNA mismatch repair protein MSH6 isoform X1 K08737 MSH6; DNA mismatch repair protein MSH6
E 111883911 DNA mismatch repair protein MSH7 K08737 MSH6; DNA mismatch repair protein MSH6
D MutL homologs
E 111910012 DNA mismatch repair protein MLH1 K08734 MLH1; DNA mismatch repair protein MLH1
E 111917942 DNA mismatch repair protein PMS1 isoform X1 K10858 PMS2; DNA mismatch repair protein PMS2
E 111915984 DNA mismatch repair protein MLH3 K08739 MLH3; DNA mismatch repair protein MLH3
D DNA polymerase delta complex
E 111897619 DNA polymerase delta catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E 111908879 DNA polymerase delta small subunit K02328 POLD2; DNA polymerase delta subunit 2
E 111913871 uncharacterized protein LOC111913871 K03504 POLD3; DNA polymerase delta subunit 3
E 111921207 uncharacterized protein LOC111921207 K03505 POLD4; DNA polymerase delta subunit 4
D RPA (replication factor A)
E 111892538 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 111905201 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 111910499 replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 111892174 replication protein A 32 kDa subunit A K10739 RFA2; replication factor A2
E 111909598 replication protein A 32 kDa subunit B K10739 RFA2; replication factor A2
E 111920046 replication protein A 32 kDa subunit B K10739 RFA2; replication factor A2
E 111897084 replication protein A 14 kDa subunit B K10740 RPA3; replication factor A3
D RFC (replication factor C)
E 111914702 replication factor C subunit 1 isoform X1 K10754 RFC1; replication factor C subunit 1
E 111920799 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
E 111905574 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
E 111899774 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
E 111899159 uncharacterized protein LOC111899159 K10756 RFC3_5; replication factor C subunit 3/5
E 111906008 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
E 111884448 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
D Other MMR factors
E 111919730 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 111916510 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 111880340 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 111915137 exonuclease 1 K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E 111880618 exonuclease 1 isoform X1 K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E 111886023 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E 111908346 uncharacterized protein LOC111908346 isoform X1 K24755 WDR76; WD repeat-containing protein 76
E 111909455 uncharacterized protein LOC111909455 K24755 WDR76; WD repeat-containing protein 76
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
E 111895473 double-strand break repair protein MRE11 isoform X2 K10865 MRE11; double-strand break repair protein MRE11
E 111895839 nibrin homolog K10867 NBN; nibrin
D BRCA1-core complex
E 111891930 BRCA1-associated RING domain protein 1 isoform X1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 111891932 BRCA1-associated RING domain protein 1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 111880851 protein BREAST CANCER SUSCEPTIBILITY 1 homolog K10683 BARD1; BRCA1-associated RING domain protein 1
D BRCA1-A complex
E 111906078 uncharacterized protein LOC111906078 K20776 BABAM; BRISC and BRCA1-A complex member 1
E 111914274 uncharacterized protein LOC111914274 K12173 BRE; BRCA1-A complex subunit BRE
E 111910221 26S proteasome regulatory subunit rpn11 K11864 BRCC3; BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
D BRCA1-B complex
E 111917407 uncharacterized protein LOC111917407 K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
E 111892018 BRCT domain-containing protein At4g02110 K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
E 111911871 uncharacterized protein LOC111911871 K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
D BRCA1-C complex
E 111895473 double-strand break repair protein MRE11 isoform X2 K10865 MRE11; double-strand break repair protein MRE11
E 111895839 nibrin homolog K10867 NBN; nibrin
D BRCA complex
E 111890809 protein BREAST CANCER SUSCEPTIBILITY 2 homolog B isoform X2 K08775 BRCA2; breast cancer 2 susceptibility protein
E 111917094 DNA repair protein RAD51 homolog K04482 RAD51; DNA repair protein RAD51
D RecA family proteins
E 111917094 DNA repair protein RAD51 homolog K04482 RAD51; DNA repair protein RAD51
E 111921032 DNA repair protein RAD51 homolog 2 K10869 RAD51L1; RAD51-like protein 1
E 111876926 DNA repair protein RAD51 homolog 3 isoform X2 K10870 RAD51L2; RAD51-like protein 2
E 111921053 DNA repair protein RAD51 homolog 4 isoform X1 K10871 RAD51L3; RAD51-like protein 3
E 111881397 DNA repair protein XRCC2 homolog K10879 XRCC2; DNA-repair protein XRCC2
E 111909607 DNA repair protein XRCC3 homolog K10880 XRCC3; DNA-repair protein XRCC3
D Rad52 family proteins
E 111911686 DNA repair RAD52-like protein 1, mitochondrial K26556 RAD52-1; DNA repair RAD52-like protein 1, mitochondrial
E 111912366 DNA repair RAD52-like protein 2, chloroplastic K26558 RAD52-2; DNA repair RAD52-like protein 2, chloroplastic
D Rad54 family proteins
E 111919667 SNF2 domain-containing protein CLASSY 1 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 111919682 SNF2 domain-containing protein CLASSY 1 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 111912444 protein CHROMATIN REMODELING 35 isoform X2 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 111907374 SNF2 domain-containing protein CLASSY 4 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 111877712 protein CHROMATIN REMODELING 25 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 111918195 protein CHROMATIN REMODELING 35 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
D RecQ family DNA helicases
E 111921264 ATP-dependent DNA helicase Q-like 1 isoform X1 K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
E 111903465 ATP-dependent DNA helicase Q-like 2 K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
E 111880001 ATP-dependent DNA helicase Q-like SIM K10900 WRN; werner syndrome ATP-dependent helicase [EC:5.6.2.4]
E 111888247 ATP-dependent DNA helicase Q-like 4A isoform X1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 111877989 ATP-dependent DNA helicase Q-like 4A K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 111894227 ATP-dependent DNA helicase Q-like 3 isoform X2 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 111906266 ATP-dependent DNA helicase Q-like 5 K10730 RECQL4; ATP-dependent DNA helicase Q4 [EC:5.6.2.4]
D Bloom's syndrome complex (BTR)
E 111888247 ATP-dependent DNA helicase Q-like 4A isoform X1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 111877989 ATP-dependent DNA helicase Q-like 4A K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 111894227 ATP-dependent DNA helicase Q-like 3 isoform X2 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 111888272 DNA topoisomerase 3-beta isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 111909794 DNA topoisomerase 3-alpha K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 111895391 recQ-mediated genome instability protein 1 isoform X1 K10990 RMI1; RecQ-mediated genome instability protein 1
E 111886114 uncharacterized protein LOC111886114 K15365 RMI2; RecQ-mediated genome instability protein 2
D RPA (replication factor A)
E 111892538 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 111905201 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 111910499 replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 111892174 replication protein A 32 kDa subunit A K10739 RFA2; replication factor A2
E 111909598 replication protein A 32 kDa subunit B K10739 RFA2; replication factor A2
E 111920046 replication protein A 32 kDa subunit B K10739 RFA2; replication factor A2
E 111897084 replication protein A 14 kDa subunit B K10740 RPA3; replication factor A3
D Protein phosphatase 4
E 111889636 serine/threonine-protein phosphatase PP-X isozyme 2 K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16]
E 111891842 uncharacterized protein LOC111891842 K15425 PPP4R2; serine/threonine-protein phosphatase 4 regulatory subunit 2
E 111914152 uncharacterized protein LOC111914152 isoform X1 K17491 SMEK; protein phosphatase 4 regulatory subunit 3
E 111880122 uncharacterized protein LOC111880122 isoform X1 K17491 SMEK; protein phosphatase 4 regulatory subunit 3
D AP-5 complex
E 111909093 uncharacterized protein LOC111909093 K19022 AP5B1; AP-5 complex subunit beta-1
E 111885091 AP-5 complex subunit mu K19023 AP5M1; AP-5 complex subunit mu-1
E 111912744 uncharacterized protein LOC111912744 K19025 AP5Z1; AP-5 complex subunit zeta-1
D SMC5-SMC6 complex
E 111885265 structural maintenance of chromosomes protein 5 K22803 SMC5; structural maintenance of chromosomes protein 5
E 111901616 structural maintenance of chromosomes protein 6B K22804 SMC6; structural maintenance of chromosomes protein 6
E 111887886 uncharacterized protein LOC111887886 K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27]
E 111919971 E3 SUMO-protein ligase MMS21 K22756 NSMCE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-]
E 111899917 non-structural maintenance of chromosomes element 4 homolog A K22825 NSMCE4; non-structural maintenance of chromosomes element 4
E 111899918 non-structural maintenance of chromosomes element 4 homolog B-like K22825 NSMCE4; non-structural maintenance of chromosomes element 4
E 111908959 non-structural maintenance of chromosomes element 4 homolog A K22825 NSMCE4; non-structural maintenance of chromosomes element 4
D Other HR factors
E 111882480 crossover junction endonuclease EME1B isoform X1 K10882 EME1; crossover junction endonuclease EME1 [EC:3.1.22.-]
E 111911139 crossover junction endonuclease MUS81 isoform X1 K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-]
E 111891683 protein DSS1 HOMOLOG ON CHROMOSOME V K10881 SHFM1; 26 proteasome complex subunit DSS1
E 111913533 protein DSS1 HOMOLOG ON CHROMOSOME V K10881 SHFM1; 26 proteasome complex subunit DSS1
E 111908063 structure-specific endonuclease subunit slx1 K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E 111878750 structure-specific endonuclease subunit SLX1 K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E 111918587 single-strand DNA endonuclease 1 K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E 111880807 flap endonuclease GEN-like 1 isoform X1 K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E 111918021 uncharacterized protein LOC111918021 K19026 SPG11; spatacsin
E 111896742 uncharacterized protein LOC111896742 isoform X1 K19027 ZFYVE26; zinc finger FYVE domain-containing protein 26
E 111896356 protein MRG1 K11339 MORF4L1; mortality factor 4-like protein 1
E 111902747 protein MRG1 isoform X1 K11339 MORF4L1; mortality factor 4-like protein 1
E 111905903 uncharacterized protein LOC111905903 K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
E 111889045 ATPase family AAA domain-containing protein FIGL1 K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-]
E 111889458 ATPase family AAA domain-containing protein FIGL1 K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-]
E 111889468 ATPase family AAA domain-containing protein FIGL1 K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-]
E 111904249 uncharacterized protein LOC111904249 K25770 ZSWIM7; zinc finger SWIM domain-containing protein 7
E 111897002 3'-5' exonuclease isoform X1 K22807 WRNexo; werner syndrome-like exonuclease [EC:3.1.11.-]
E 111915309 DNA-dependent metalloprotease WSS1 K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E 111913524 DNA-dependent metalloprotease WSS1 K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E 111891132 single-stranded DNA-binding protein WHY1, chloroplastic K26559 WHY1; single-stranded DNA-binding protein WHY1
E 111903030 single-stranded DNA-binding protein WHY2, mitochondrial K26561 WHY2; single-stranded DNA-binding protein WHY2
C NHEJ (non-homologous end-joining)
D DNA-PK complex
E 111917223 ATP-dependent DNA helicase 2 subunit KU70 K10884 XRCC6; ATP-dependent DNA helicase 2 subunit 1
E 111916115 ATP-dependent DNA helicase 2 subunit KU80 K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2
D MRX complex
E 111895473 double-strand break repair protein MRE11 isoform X2 K10865 MRE11; double-strand break repair protein MRE11
D DNA Ligase 4 complex
E 111896824 DNA ligase 4 K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
E 111897345 DNA repair protein XRCC4 K10886 XRCC4; DNA-repair protein XRCC4
D X-family DNA polymerases
E 111886150 DNA polymerase lambda K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
D Other NHEJ factors
E 111908638 transcription factor bHLH140 K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E 111891005 uncharacterized protein LOC111891005 K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
E 111876764 structural maintenance of chromosomes flexible hinge domain-containing protein GMI1 K23113 SMCHD1; structural maintenance of chromosomes flexible hinge domain-containing protein 1
C FA (Fanconi anemia) pathway
D FA core complex
E 111900309 uncharacterized protein LOC111900309 K10606 FANCL; E3 ubiquitin-protein ligase FANCL [EC:2.3.2.27]
E 111900933 DEAD-box ATP-dependent RNA helicase FANCM K10896 FANCM; fanconi anemia group M protein
D FA core complex binding factors
E 111906609 protein MHF1 homolog isoform X2 K11511 APITD1; centromere protein S
E 111889970 protein MHF2 homolog K15360 STRA13; centromere protein X
E 111881379 protein MHF2 homolog isoform X1 K15360 STRA13; centromere protein X
E 111918604 probable ubiquitin-conjugating enzyme E2 37 K13960 UBE2T; ubiquitin-conjugating enzyme E2 T [EC:2.3.2.23]
D Bloom's syndrome complex (BTR)
E 111888247 ATP-dependent DNA helicase Q-like 4A isoform X1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 111877989 ATP-dependent DNA helicase Q-like 4A K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 111894227 ATP-dependent DNA helicase Q-like 3 isoform X2 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 111888272 DNA topoisomerase 3-beta isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 111909794 DNA topoisomerase 3-alpha K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 111895391 recQ-mediated genome instability protein 1 isoform X1 K10990 RMI1; RecQ-mediated genome instability protein 1
E 111886114 uncharacterized protein LOC111886114 K15365 RMI2; RecQ-mediated genome instability protein 2
D FANCD2-I complex
E 111883471 uncharacterized protein LOC111883471 K10891 FANCD2; fanconi anemia group D2 protein
E 111895446 uncharacterized protein LOC111895446 isoform X1 K10895 FANCI; fanconi anemia group I protein
D Downstream FA components
E 111890809 protein BREAST CANCER SUSCEPTIBILITY 2 homolog B isoform X2 K08775 BRCA2; breast cancer 2 susceptibility protein
E 111917407 uncharacterized protein LOC111917407 K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
D Other FA pathway factors
E 111896950 fanconi-associated nuclease 1 homolog isoform X1 K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E 111917094 DNA repair protein RAD51 homolog K04482 RAD51; DNA repair protein RAD51
E 111876926 DNA repair protein RAD51 homolog 3 isoform X2 K10870 RAD51L2; RAD51-like protein 2
E 111880521 uncharacterized protein LOC111880521 K11137 TELO2; telomere length regulation protein
E 111914297 uncharacterized protein LOC111914297 K15361 WDR48; WD repeat-containing protein 48
E 111903867 uncharacterized protein LOC111903867 K15361 WDR48; WD repeat-containing protein 48
E 111880890 uncharacterized protein LOC111880890 K15361 WDR48; WD repeat-containing protein 48
C Other DSBR factors
D Protein phosphatase 6
E 111903028 phytochrome-associated serine/threonine-protein phosphatase K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit [EC:3.1.3.16]
E 111906614 uncharacterized protein LOC111906614 K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
D Ubiquitin ligases
D Others
E 111906778 uncharacterized protein LOC111906778 K23314 WRAP53; telomerase Cajal body protein 1
E 111912553 uncharacterized protein LOC111912553 K24752 WDR70; WD repeat-containing protein 70
E 111908346 uncharacterized protein LOC111908346 isoform X1 K24755 WDR76; WD repeat-containing protein 76
E 111909455 uncharacterized protein LOC111909455 K24755 WDR76; WD repeat-containing protein 76
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D 111887832 DNA polymerase eta K03509 POLH; DNA polymerase eta [EC:2.7.7.7]
D 111904227 DNA polymerase kappa isoform X1 K03511 POLK; DNA polymerase kappa [EC:2.7.7.7]
D 111904206 DNA repair protein REV1 isoform X1 K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-]
C B-family DNA polymerases
D 111884533 DNA polymerase zeta catalytic subunit K02350 REV3L; DNA polymerase zeta [EC:2.7.7.7]
C A-family DNA polymerase
C Rad6 epistasis group
D 111892153 ubiquitin-conjugating enzyme E2 2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 111896131 ubiquitin-conjugating enzyme E2 2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 111906795 ubiquitin-conjugating enzyme E2 2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 111921592 ubiquitin-conjugating enzyme E2 2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 111917338 DNA repair protein RAD5A K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D 111919142 DNA repair protein RAD5B isoform X1 K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D 111889407 putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 K15711 SMARCA3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
D 111916647 ubiquitin-conjugating enzyme E2 variant 1D K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 111879114 ubiquitin-conjugating enzyme E2 variant 1B K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 111883249 ubiquitin-conjugating enzyme E2 variant 1D K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 111898002 ubiquitin-conjugating enzyme E2 36 K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
D 111920001 ubiquitin-conjugating enzyme E2 35 K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
D 111913718 ubiquitin-conjugating enzyme E2 35 K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
C Other TLS factors
D 111919730 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
D 111916510 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
D 111880340 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
B Check point factors
C Rad9-Hus1-Rad1 complex
D 111895310 uncharacterized protein LOC111895310 isoform X1 K10994 RAD9A; cell cycle checkpoint control protein RAD9A [EC:3.1.11.2]
D 111898900 checkpoint protein hus1 K10903 HUS1; HUS1 checkpoint protein
D 111884123 uncharacterized protein LOC111884123 K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C HRAD17(Rad24)-RFC complex
D 111915450 cell cycle checkpoint protein RAD17 K06662 HRAD17; cell cycle checkpoint protein
D 111920799 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
D 111905574 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
D 111899774 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
D 111899159 uncharacterized protein LOC111899159 K10756 RFC3_5; replication factor C subunit 3/5
D 111906008 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
D 111884448 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
C Rad17-Mec3-Ddc1 complex
D 111884123 uncharacterized protein LOC111884123 K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C FPC (fork protection complex)
D 111917539 uncharacterized protein LOC111917539 K10997 TIMELESS; replication fork protection complex subunit TIMELESS/Tof1/Swi1
D 111912372 uncharacterized protein LOC111912372 K10998 TIPIN; replication fork protection complex subunit TIPIN/Csm3/Swi3
C Triple T complex
D 111880521 uncharacterized protein LOC111880521 K11137 TELO2; telomere length regulation protein
D 111919279 uncharacterized protein LOC111919279 K20403 TTI1; TELO2-interacting protein 1
D 111882009 uncharacterized protein At2g39910 isoform X1 K23115 TTI2; TELO2-interacting protein 2
C BAG6-UBL4A-GET4 complex
D 111916427 protein GET4 K23387 GET4; golgi to ER traffic protein 4
C Other check point factors
D 111920839 serine/threonine-protein kinase ATR isoform X1 K06640 ATR; serine/threonine-protein kinase ATR [EC:2.7.11.1]
D 111913545 serine/threonine-protein kinase ATM isoform X1 K04728 ATM; serine-protein kinase ATM [EC:2.7.11.1]
D 111894696 14-3-3-like protein GF14 lambda K06630 YWHAE; 14-3-3 protein epsilon
D 111893404 14-3-3 protein 9 K06630 YWHAE; 14-3-3 protein epsilon
D 111917681 14-3-3 protein 2 K06630 YWHAE; 14-3-3 protein epsilon
D 111910737 14-3-3-like protein K06630 YWHAE; 14-3-3 protein epsilon
D 111912735 uncharacterized protein LOC111912735 isoform X1 K06630 YWHAE; 14-3-3 protein epsilon
D 111915855 14-3-3-like protein GF14 iota isoform X1 K06630 YWHAE; 14-3-3 protein epsilon
D 111910757 14-3-3-like protein K06630 YWHAE; 14-3-3 protein epsilon
D 111913414 14-3-3-like protein GF14 kappa K06630 YWHAE; 14-3-3 protein epsilon
D 111908937 14-3-3 protein 2 K06630 YWHAE; 14-3-3 protein epsilon
D 111901836 14-3-3-like protein K06630 YWHAE; 14-3-3 protein epsilon
D 111913724 14-3-3 protein 9 K06630 YWHAE; 14-3-3 protein epsilon
D 111878279 14-3-3 protein 7 K06630 YWHAE; 14-3-3 protein epsilon
D 111879121 14-3-3-like protein GF14 iota K06630 YWHAE; 14-3-3 protein epsilon
D 111883381 14-3-3-like protein K06630 YWHAE; 14-3-3 protein epsilon
D 111884387 14-3-3 protein 9 isoform X1 K06630 YWHAE; 14-3-3 protein epsilon
D 111902653 14-3-3-like protein GF14 iota K06630 YWHAE; 14-3-3 protein epsilon
D 111896156 wee1-like protein kinase K06632 WEE1; wee1-like protein kinase [EC:2.7.11.1]
D 111897552 uncharacterized protein LOC111897552 K20780 MDC1; mediator of DNA damage checkpoint protein 1
D 111897875 serine/threonine-protein kinase Nek6 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 111899070 serine/threonine-protein kinase Nek4 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 111918890 serine/threonine-protein kinase Nek2 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 111921888 serine/threonine-protein kinase Nek2 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 111877012 serine/threonine-protein kinase Nek5 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 111909354 uncharacterized protein LOC111909354 K22422 DONSON; protein downstream neighbor of Son
D 111901316 uncharacterized protein LOC111901316 isoform X1 K22422 DONSON; protein downstream neighbor of Son
D 111913674 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 111886017 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 111894558 uncharacterized protein LOC111894558 K25059 SDE2; replication stress response regulator SDE2
D 111915739 protein DECREASED SIZE EXCLUSION LIMIT 1 K24770 DSE1; protein decreased size exclusion limit 1
B Other factors with a suspected DNA repair function
C DNA polymerases
D 111913054 helicase and polymerase-containing protein TEBICHI K02349 POLQ; DNA polymerase theta [EC:2.7.7.7]
D 111892992 uncharacterized protein LOC111892992 K02331 POL5; DNA polymerase phi [EC:2.7.7.7]
D 111892994 uncharacterized protein LOC111892994 K02331 POL5; DNA polymerase phi [EC:2.7.7.7]
D 111917997 uncharacterized protein LOC111917997 K22761 PRIMPOL; DNA-directed primase/polymerase protein [EC:2.7.7.102 2.7.7.7]
C Nucleases
D 111894212 uncharacterized protein LOC111894212 K15340 DCLRE1A; DNA cross-link repair 1A protein
D 111880584 DNA cross-link repair protein SNM1 K15340 DCLRE1A; DNA cross-link repair 1A protein
D 111890096 uncharacterized protein LOC111890096 isoform X1 K15341 DCLRE1B; DNA cross-link repair 1B protein [EC:3.1.-.-]
D 111898620 exonuclease V, chloroplastic K17815 EXO5; exonuclease V [EC:3.1.-.-]
D 111893929 uncharacterized protein LOC111893929 isoform X1 K21813 ENDOV; endonuclease V [EC:3.1.26.-]
D 111883288 uncharacterized protein LOC111883288 K25861 ZRANB3; DNA annealing helicase and endonuclease ZRANB3 [EC:5.6.2.- 3.1.-.-]
D 111894484 endonuclease 2 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D 111879181 endonuclease 4 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D 111887369 endonuclease 1 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
C Helicases
D 111899970 switch 2 K20098 ERCC6L2; DNA excision repair protein ERCC-6-like 2 [EC:5.6.2.-]
C PSO4 complex
D 111885924 pre-mRNA-processing factor 19 K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D 111910985 cell division cycle 5-like protein K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D 111918459 pre-mRNA-splicing factor SPF27 homolog K12861 BCAS2; pre-mRNA-splicing factor SPF27
D 111878538 protein pleiotropic regulatory locus 1 isoform X1 K12862 PLRG1; pleiotropic regulator 1
C Modulation of nucleotide pools
D 111896512 nudix hydrolase 1 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 111910463 nudix hydrolase 1 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 111894849 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 111909470 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 111881355 uncharacterized protein LOC111881355 K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 111918906 ribonucleoside-diphosphate reductase large subunit K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D 111882479 ribonucleoside-diphosphate reductase large subunit K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D 111888996 ribonucleoside-diphosphate reductase small chain K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
D 111896236 uncharacterized protein LOC111896236 K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
D 111876578 ribonucleoside-diphosphate reductase small chain A K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
D 111877717 ribonucleoside-diphosphate reductase small chain K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D 111918760 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E 111906635 uracil-DNA glycosylase, mitochondrial K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E 111909166 DNA-3-methyladenine glycosylase 1 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E 111885821 uncharacterized protein LOC111885821 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E 111920997 LOW QUALITY PROTEIN: DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E 111886675 adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E 111896510 uncharacterized protein LOC111896510 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 111917499 uncharacterized protein LOC111917499 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 111914864 uncharacterized protein LOC111914864 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 111918964 uncharacterized protein LOC111918964 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 111913811 uncharacterized protein LOC111913811 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 111881647 uncharacterized protein LOC111881647 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 111909793 formamidopyrimidine-DNA glycosylase isoform X1 K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E 111915003 endonuclease III homolog 1, chloroplastic isoform X1 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 111877946 putative DNA glycosylase At3g47830 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E 111879430 DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic isoform X2 K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
D DNA ligase
D DNA polymerase I
E 111920154 DNA polymerase I A, chloroplastic/mitochondrial K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E 111920154 DNA polymerase I A, chloroplastic/mitochondrial K02335 polA; DNA polymerase I [EC:2.7.7.7]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F 122195286 LOW QUALITY PROTEIN: DNA-directed RNA polymerase subunit beta-like K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F 3772845 rpoB; RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F 128126414 DNA-directed RNA polymerase subunit beta-like K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F 128133466 DNA-directed RNA polymerase subunit beta-like K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F 122197871 DNA-directed RNA polymerase subunit beta'' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F 122194862 DNA-directed RNA polymerase subunit beta'-like K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F 122195388 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F 40498763 RNAP; RNA polymerase K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F 3772823 rpoC1; RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F 3772824 rpoC2; RNA polymerase beta'' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F 122195841 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F 128126415 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F 122194844 LOW QUALITY PROTEIN: DNA-directed RNA polymerase subunit alpha-like K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F 122194916 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F 122198258 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F 3772822 rpoA; RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F 128126404 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F 128132171 DNA-directed RNA polymerase subunit alpha-like K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F 122196513 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E 111917271 uncharacterized protein LOC111917271 K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
D Other MMR factors
E 111895877 single-stranded DNA-binding protein, mitochondrial K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E 111919923 DNA repair protein recA homolog 3, mitochondrial isoform X1 K03553 recA; recombination protein RecA
E 111884742 DNA repair protein recA homolog 1, chloroplastic K03553 recA; recombination protein RecA
D RecFOR pathway proteins
E 111919923 DNA repair protein recA homolog 3, mitochondrial isoform X1 K03553 recA; recombination protein RecA
E 111884742 DNA repair protein recA homolog 1, chloroplastic K03553 recA; recombination protein RecA
E 111904667 uncharacterized protein LOC111904667 K04485 radA; DNA repair protein RadA/Sms
E 111912575 ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X1 K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F 111909688 DNA gyrase subunit A, chloroplastic/mitochondrial K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F 111889396 DNA gyrase subunit B, chloroplastic/mitochondrial K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
E Facilitator
E Supressor
F 111878768 uncharacterized protein LOC111878768 K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
D 111919923 DNA repair protein recA homolog 3, mitochondrial isoform X1 K03553 recA; recombination protein RecA
D 111884742 DNA repair protein recA homolog 1, chloroplastic K03553 recA; recombination protein RecA
D 111895877 single-stranded DNA-binding protein, mitochondrial K03111 ssb; single-strand DNA-binding protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D 111896512 nudix hydrolase 1 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 111910463 nudix hydrolase 1 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 111894849 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 111909470 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 111881355 uncharacterized protein LOC111881355 K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
C Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024