+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Levilactobacillus zymae

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AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D LZ3411_1392 Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C LZ3411_1132 GTP-binding protein Era K03595 era; GTPase C LZ3411_1037 GTP-binding protein Obg K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C LZ3411_1084 Transcription termination protein NusA K02600 nusA; transcription termination/antitermination protein NusA C LZ3411_1419 Transcription termination protein NusB K03625 nusB; transcription antitermination protein NusB C LZ3411_0611 Transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D LZ3411_1489 Ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D LZ3411_0482 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D LZ3411_1404 Ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D LZ3411_0626 Ribosomal RNA small subunit methyltransferase C K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D LZ3411_1016 Ribosomal RNA small subunit methyltransferase D K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D LZ3411_1108 Ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D LZ3411_2078 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D LZ3411_0958 rRNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D LZ3411_0649 rRNA small subunit methyltransferase I K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D LZ3411_1414 RNA binding methyltransferase FtsJ like K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] C 23S rRNA modification factors D LZ3411_0949 Ribosomal RNA large subunit methyltransferase A K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187] D LZ3411_0607 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D LZ3411_0041 LSU m3Psi1915 methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D LZ3411_0776 LSU m5C1962 methyltransferase RlmI K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D LZ3411_1414 RNA binding methyltransferase FtsJ like K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D LZ3411_0798 RNA methyltransferase, TrmA family K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D LZ3411_1162 Ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D LZ3411_1301 Ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D LZ3411_2232 Similar to ribosomal large subunit pseudouridine synthase D, Bacillus subtilis YhcT type K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D LZ3411_0936 Similar to ribosomal large subunit pseudouridine synthase D, Bacillus subtilis YjbO type K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D LZ3411_1727 Similar to ribosomal large subunit pseudouridine synthase D, Bacillus subtilis YjbO type K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] B ribosomal protein modification factors C LZ3411_0652 Ribosomal-protein-S18p-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C LZ3411_1054 Ribosomal-protein-L7p-serine acetyltransferase K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-] C LZ3411_1377 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM C LZ3411_1107 Ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] B rRNA processing factors C LZ3411_1392 Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C LZ3411_1571 Putative Holliday junction resolvase YqgF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] C LZ3411_0606 COG1939: Ribonuclease III family protein K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-] B rRNA helicases C LZ3411_0534 DEAD-box ATP-dependent RNA helicase CshA K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] C LZ3411_1573 DEAD-box ATP-dependent RNA helicase CshB K18692 cshB; ATP-dependent RNA helicase CshB [EC:5.6.2.7] B GTPases C LZ3411_1132 GTP-binding protein Era K03595 era; GTPase C LZ3411_1401 Ribosome small subunit-stimulated GTPase EngC K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] C LZ3411_1170 GTP-binding protein EngA K03977 engA; GTPase C LZ3411_1037 GTP-binding protein Obg K03979 obgE; GTPase [EC:3.6.5.-] C LZ3411_1191 50S ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF) K14540 rbgA; ribosome biogenesis GTPase A C LZ3411_1782 GTP-binding protein HflX K03665 hflX; GTPase C LZ3411_1468 GTP-binding protein YqeH, required for biogenesis of 30S ribosome subunit K06948 yqeH; 30S ribosome assembly GTPase B Other maturation factors C LZ3411_1639 TsaC protein (YrdC-Sua5 domains) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C LZ3411_1110 GTP pyrophosphokinase, (p)ppGpp synthetase I K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C LZ3411_1088 Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A C LZ3411_1083 FIG000325: clustered with transcription termination protein NusA K09748 rimP; ribosome maturation factor RimP C LZ3411_0003 FIG002958: hypothetical protein K14761 rlbA; ribosome-associated protein C LZ3411_1464 Ribosomal silencing factor RsfA (former Iojap) K09710 ybeB; ribosome-associated protein C LZ3411_1130 Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly K07042 ybeY; probable rRNA maturation factor C LZ3411_1467 FIG004454: RNA binding protein K07574 yhbY; RNA-binding protein C LZ3411_0675 Ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor C LZ3411_2073 GTP-binding and nucleic acid-binding protein YchF K06942 ychF; ribosome-binding ATPase C LZ3411_1461 COG1399 protein in cluster with ribosomal protein L32p, Firmicutes subfamily K07040 yceD; DUF177 domain-containing protein # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024