+E Ribosome biogenesis KO
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Ribosome Biogenesis - Methanobacterium formicicum DSM1535
%
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
D DSM1535_0985 Pre-mRNA processing ribonucleoprotein, binding domain-containing protein K14564 NOP56; nucleolar protein 56
C Box H/ACA snoRNPs
D DSM1535_1192 hypothetical protein K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3
B 90S particles
C U3 small nucleolar RNA-associated proteins
D DSM1535_2372 hypothetical protein K14561 IMP4; U3 small nucleolar ribonucleoprotein protein IMP4
C Helicases
C GTPase
C RNase
D DSM1535_1884 ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
D DSM1535_0127 KH domain-containing protein K06961 KRR1; ribosomal RNA assembly protein
B Pre-40S particles
C Kinases
D DSM1535_0126 Non-specific serine/threonine protein kinase K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
C Export and cytoplasmic maturation factors
D DSM1535_0664 adenylate kinase K18532 AK6; adenylate kinase [EC:2.7.4.3]
D DSM1535_0018 putative ribosome biogenesis protein MTH_554 K09140 TSR3; rRNA small subunit aminocarboxypropyltransferase [EC:2.5.1.157]
C Other pre-40S particles
D DSM1535_0602 putative ABC transporter ATP-binding protein MJ0719 K06174 ABCE1; ATP-binding cassette, sub-family E, member 1
B Pre-60S particles
C Helicases
C GTPases
D DSM1535_2221 small GTP-binding protein K06943 NOG1; nucleolar GTP-binding protein
C RNases
D RNase MRP
E DSM1535_0325 hypothetical protein K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5]
E DSM1535_2379 hypothetical protein K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5]
E DSM1535_2380 ribonuclease P protein component 3 K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]
C Kinases
C Export and cytoplasmic maturation factors
D DSM1535_0657 eif6; Translation initiation factor 6 K03264 EIF6; translation initiation factor 6
D DSM1535_0676 NMD3 family protein K07562 NMD3; 60S ribosomal export protein NMD3
D DSM1535_2377 Ribosome maturation protein SDO1 homolog K14574 SDO1; ribosome maturation protein SDO1
C 5-FMC complex
C Ribosome quality control proteins
D DSM1535_0184 Cell division cycle protein 48 homolog MJ1156 K13525 VCP; transitional endoplasmic reticulum ATPase
D DSM1535_0643 Cell division cycle protein 48 homolog MJ1156 K13525 VCP; transitional endoplasmic reticulum ATPase
C Other pre-60S particles
B Other ribosome biogenesis factors
C DSM1535_0375 GTP-binding protein HSR1-like protein K03595 era; GTPase
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
D DSM1535_0985 Pre-mRNA processing ribonucleoprotein, binding domain-containing protein K14564 NOP56; nucleolar protein 56
D DSM1535_0987 flpA; Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase K04795 flpA; fibrillarin-like pre-rRNA processing protein
D DSM1535_0581 50S ribosomal protein L7 K02936 RP-L7Ae; large subunit ribosomal protein L7Ae
C Box H/ACA snoRNPs
D DSM1535_0059 hypothetical protein K07569 gar1; RNA-binding protein
D DSM1535_1192 hypothetical protein K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3
B rRNA transcription factors
C DSM1535_1618 NusA family KH domain-containing protein K02600 nusA; transcription termination/antitermination protein NusA
B rRNA modification factors
C 16S rRNA modification factors
D DSM1535_1211 rsmA; putative ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
C 23S rRNA modification factors
D DSM1535_0672 rlmE; Ribosomal RNA large subunit methyltransferase E K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
B ribosomal protein modification factors
C DSM1535_2435 ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
B rRNA processing factors
C DSM1535_1884 ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
B rRNA helicases
C DSM1535_2410 cshA; DEAD-box ATP-dependent RNA helicase CshA K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C DSM1535_0375 GTP-binding protein HSR1-like protein K03595 era; GTPase
B Other maturation factors
C DSM1535_0606 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C DSM1535_0662 hypothetical protein K07574 yhbY; RNA-binding protein
C DSM1535_1431 putative GTP-binding protein MJ1332 K06942 ychF; ribosome-binding ATPase
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024