+F Repair protein KO #

  DNA Repair and Recombination Proteins - Nitrosomonas europaea

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D NE0885 ogt; Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E NE0056 mutY; HhH-GPD K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E NE2223 nth; HhH-GPD:Iron-sulfur cluster loop (FCL) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D NE2215 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D NE1462 dut; dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D NE0885 ogt; Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E NE1560 conserved hypothetical protein K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E NE0931 conserved hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E NE1398 putative DNA polymerase-related protein, bacteriophage-type K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E NE0981 HhH-GPD K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E NE0056 mutY; HhH-GPD K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E NE2552 mutM; Formamidopyrimidine-DNA glycolase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E NE2223 nth; HhH-GPD:Iron-sulfur cluster loop (FCL) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E NE2192 xthA2; Exodeoxyribonuclease III:Exodeoxyribonuclease III xth K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E NE0023 xthA1; Exodeoxyribonuclease III:Exodeoxyribonuclease III xth K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E NE0010 recJ; recJ: single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E NE1753 lig; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E NE1468 polA; polA; DNA polymerase I protein K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E NE2455 uvrA1; ABC transporter:Excinuclease ABC A subunit K03701 uvrA; excinuclease ABC subunit A E NE0785 uvrB; Helicase subunit of the DNA excision repair complex K03702 uvrB; excinuclease ABC subunit B E NE0933 uvrC; uvrC Nuclease subunit of the excinuclease complex K03703 uvrC; excinuclease ABC subunit C E NE1473 uvrD; UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E NE1468 polA; polA; DNA polymerase I protein K02335 polA; DNA polymerase I [EC:2.7.7.7] E NE1753 lig; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F NE2046 rpoB; RNA polymerases beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F NE2045 rpoC; RNA polymerase, alpha subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F NE0426 rpoA; Bacterial RNA polymerase, alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F NE2255 rpoZ; RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F NE0008 mfd; mfd: transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E NE1705 mutS; mutS; DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS E NE0830 DNA mismatch repair protein MutS family, C-terminal domain K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E NE1742 mutL; mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E NE0671 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E NE1172 xseA; xseA; exodeoxyribonuclease vII large subunit protein K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E NE1159 xseB; Exonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E NE1978 dnaE1; dnaE1; DNA polymerase III (alpha chain) protein K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E NE0002 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E NE0442 holC; putative DNA polymerase III (chi subunit) protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E NE1137 holA; putative DNA polymerase III (delta subunit) protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E NE2180 holB; putative DNA polymerase III (delta' subunit) protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E NE0141 dnaQ; probable DNA polymerase III (epsilon chain) protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E NE0433 dnaX; dnaX; DNA polymerase III (subunits tau and gamma) protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E NE1753 lig; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E NE1473 uvrD; UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E NE2453 ssb; Single-strand binding protein family K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E NE1932 recA; RecA bacterial DNA recombination protein:AAA ATPase superfamily K03553 recA; recombination protein RecA E NE0212 ruvA; probable Holliday junction DNA helicase subunit K03550 ruvA; holliday junction DNA helicase RuvA E NE0213 ruvB; ruvB; holliday junction DNA helicase protein K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E NE0211 ruvC; Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E NE1505 priA; probable priA; primosomal protein N' (replication factor Y) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E NE0197 conserved hypothetical protein K02686 priB; primosomal replication protein N E NE0671 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E NE1392 sbcC; ATP/GTP-binding site motif A (P-loop):ABC transporter K03546 sbcC; DNA repair protein SbcC/Rad50 E NE1390 sbcD; Serine/threonine specific protein phosphatase:Exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E NE1932 recA; RecA bacterial DNA recombination protein:AAA ATPase superfamily K03553 recA; recombination protein RecA E NE1808 radA; sms: DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E NE1850 recG; RecG-like helicases K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E NE2525 possible ATP-dependent DNA helicase RecG-related protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E NE0383 conserved hypothetical protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E NE0010 recJ; recJ: single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E NE1479 recN; ABC transporter:DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E NE0507 rdgC; putative recombination associated protein rdgC K03554 rdgC; recombination associated protein RdgC E NE0212 ruvA; probable Holliday junction DNA helicase subunit K03550 ruvA; holliday junction DNA helicase RuvA E NE0213 ruvB; ruvB; holliday junction DNA helicase protein K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E NE0211 ruvC; Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E NE0111 Protein of unknown function DUF48 K15342 cas1; CRISP-associated protein Cas1 E NE0844 Protein of unknown function DUF48 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E NE1392 sbcC; ATP/GTP-binding site motif A (P-loop):ABC transporter K03546 sbcC; DNA repair protein SbcC/Rad50 E NE1390 sbcD; Serine/threonine specific protein phosphatase:Exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 E NE1263 conserved hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F NE0332 gyrA; DNA gyrase/topoisomerase IV, subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F NE0003 gyrB; DNA gyrase, subunit B:DNA topoisomerase II gyrB K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] E Supressor F NE2207 hupB; Bacterial histone-like DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F NE0010 recJ; recJ: single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F NE1753 lig; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F NE0875 fis; probable factor-for-inversion-stimulation transcription regulator protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F NE0952 ihfA; Bacterial histone-like DNA-binding protein K04764 ihfA; integration host factor subunit alpha F NE1961 ihfB; Bacterial histone-like DNA-binding protein K05788 ihfB; integration host factor subunit beta E Supressor F NE0671 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F NE2564 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F NE0093 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F NE2520 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F NE2455 uvrA1; ABC transporter:Excinuclease ABC A subunit K03701 uvrA; excinuclease ABC subunit A F NE0785 uvrB; Helicase subunit of the DNA excision repair complex K03702 uvrB; excinuclease ABC subunit B F NE1339 H-NS histone family K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D NE1219 UMUC family (DNA-repair) K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D NE1932 recA; RecA bacterial DNA recombination protein:AAA ATPase superfamily K03553 recA; recombination protein RecA D NE1479 recN; ABC transporter:DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D NE2453 ssb; Single-strand binding protein family K03111 ssb; single-strand DNA-binding protein D NE1931 recX; RecX regulatory protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D NE0880 probable ATP-dependent DNA helicase-related protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D NE2215 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D NE1462 dut; dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D NE2423 nrdA; Ribonucleotide reductase large subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D NE2422 nrdB; Ribonucleotide reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024