+D GENES KO #

  KEGG Orthology (KO) - Pseudomonas aeruginosa M18

% ! A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:paf00010] D PAM18_1779 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D PAM18_4840 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D PAM18_5224 fbp; fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D PAM18_0556 fda; fructose-1,6-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D PAM18_4856 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D PAM18_1959 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D PAM18_1777 gapA; glyceraldehyde 3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D PAM18_0553 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D PAM18_5245 pgm; phosphoglyceromutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D PAM18_1311 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D PAM18_3633 pykF; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D PAM18_4419 pykA; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D PAM18_3276 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D PAM18_5129 aceE; pyruvate dehydrogenase subunit E1 K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D PAM18_0785 branched-chain alpha-keto acid dehydrogenase subunit E2 K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D PAM18_5130 aceF; dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D PAM18_3460 lpdG; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PAM18_2790 lpdV; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PAM18_4940 lpd3; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PAM18_1317 adhC; alcohol dehydrogenase class III K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D PAM18_5547 adhA; alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D PAM18_2765 putative alcohol dehydrogenase (Zn-dependent) K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D PAM18_3063 exaA; quinoprotein alcohol dehydrogenase K00114 exaA; alcohol dehydrogenase (cytochrome c) [EC:1.1.2.8] D PAM18_2774 putative cytochrome c precursor K22474 adhB; alcohol dehydrogenase (quinone), cytochrome c subunit [EC:1.1.5.5] D PAM18_5010 putative aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PAM18_3061 putative aldehyde dehydrogenase K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-] D PAM18_0918 putative aldehyde dehydrogenase K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-] D PAM18_4841 acsB; acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PAM18_4152 acsA; acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PAM18_2483 putative AMP-binding enzyme K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PAM18_4030 pauA; pimeloyl-CoA synthetase K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13] D PAM18_5090 putative acyl-CoA synthetase K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13] D PAM18_5442 algC; phosphomannomutase AlgC K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D PAM18_5542 putative aldose 1-epimerase K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15] D PAM18_2718 putative glyceraldehyde-3-phosphate dehydrogenase K00131 gapN; glyceraldehyde-3-phosphate dehydrogenase (NADP+) [EC:1.2.1.9] D PAM18_5311 pckA; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] C 00020 Citrate cycle (TCA cycle) [PATH:paf00020] D PAM18_3467 gltA; type II citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D PAM18_3486 acnA; aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3] D PAM18_3259 acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D PAM18_2351 idh; isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D PAM18_2352 icd; isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D PAM18_3462 sucA; 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D PAM18_3461 sucB; dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D PAM18_3460 lpdG; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PAM18_2790 lpdV; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PAM18_4940 lpd3; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PAM18_3458 sucD; succinyl-CoA synthetase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D PAM18_3459 sucC; succinyl-CoA synthetase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D PAM18_5567 putative coenzyme A transferase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18] D PAM18_3464 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D PAM18_3463 sdhB; succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D PAM18_3466 sdhC; succinate dehydrogenase (C subunit) K00241 sdhC; succinate dehydrogenase cytochrome b subunit D PAM18_3465 sdhD; succinate dehydrogenase (D subunit) K00242 sdhD; succinate dehydrogenase membrane anchor subunit D PAM18_4423 putative fumarase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D PAM18_4186 fumC2; fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D PAM18_4561 fumC; fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D PAM18_1513 mqoA; malate:quinone oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4] D PAM18_4737 mqoB; malate:quinone oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4] D PAM18_5556 acetyl-CoA carboxylase subunit A K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1] D PAM18_5555 pyruvate carboxylase subunit B K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1] D PAM18_5311 pckA; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D PAM18_5129 aceE; pyruvate dehydrogenase subunit E1 K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D PAM18_0785 branched-chain alpha-keto acid dehydrogenase subunit E2 K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D PAM18_5130 aceF; dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] C 00030 Pentose phosphate pathway [PATH:paf00030] D PAM18_4840 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D PAM18_1789 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D PAM18_5560 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D PAM18_1790 pgl; 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31] D PAM18_0733 putative 3-carboxymuconate cyclase K07404 pgl; 6-phosphogluconolactonase [EC:3.1.1.31] D PAM18_0608 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D PAM18_0549 tktA; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D PAM18_2167 tal; transaldolase B K00616 TALDO1; transaldolase [EC:2.2.1.2] D PAM18_0327 rpiA; ribose-5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D PAM18_3095 rbsK; ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15] D PAM18_5442 algC; phosphomannomutase AlgC K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D PAM18_1594 phnN; ATP-binding component of phosphonate transport K05774 phnN; ribose 1,5-bisphosphokinase [EC:2.7.4.23] D PAM18_4767 prs; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D PAM18_1778 edd; phosphogluconate dehydratase K01690 edd; phosphogluconate dehydratase [EC:4.2.1.12] D PAM18_1791 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D PAM18_1832 putative aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D PAM18_2718 putative glyceraldehyde-3-phosphate dehydrogenase K00131 gapN; glyceraldehyde-3-phosphate dehydrogenase (NADP+) [EC:1.2.1.9] D PAM18_2750 gcd; glucose dehydrogenase K00117 gcd; quinoprotein glucose dehydrogenase [EC:1.1.5.2] D PAM18_2775 gluconate dehydrogenase K06151 E1.1.99.3A; gluconate 2-dehydrogenase alpha chain [EC:1.1.99.3] D PAM18_2776 hypothetical protein K06152 E1.1.99.3G; gluconate 2-dehydrogenase gamma chain [EC:1.1.99.3] D PAM18_1044 putative 2-hydroxyacid dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215] D PAM18_2779 putative 2-ketogluconate kinase K11441 kguK; dehydrogluconokinase [EC:2.7.1.13] D PAM18_2777 putative 2-hydroxyacid dehydrogenase K00032 E1.1.1.43; phosphogluconate 2-dehydrogenase [EC:1.1.1.43] D PAM18_2720 gluconokinase K00851 idnK; gluconokinase [EC:2.7.1.12] D PAM18_3632 putative hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D PAM18_4191 trxB2; thioredoxin reductase 2 K22345 E4.3.1.9; glucosaminate ammonia-lyase [EC:4.3.1.9] D PAM18_0556 fda; fructose-1,6-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D PAM18_5224 fbp; fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] C 00040 Pentose and glucuronate interconversions [PATH:paf00040] D PAM18_2812 hypothetical protein K00065 kduD; 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase [EC:1.1.1.127] D PAM18_3022 putative nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D PAM18_1427 putative nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D PAM18_3021 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D PAM18_0608 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D PAM18_2698 mtlY; xylulose kinase K00854 xylB; xylulokinase [EC:2.7.1.17] D PAM18_2818 putative aldehyde dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26] D PAM18_3778 putative semialdehyde dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26] D PAM18_0220 class II aldolase/adducin domain protein K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] C 00051 Fructose and mannose metabolism [PATH:paf00051] D PAM18_2697 mtlZ; fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D PAM18_1435 algA; phosphomannose isomerase/guanosine 5'-diphospho-D-mannose pyrophosphorylase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D PAM18_2808 pslB; putative phosphomannose isomerase/GDP-mannose pyrophosphorylase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D PAM18_5574 wbpW; phosphomannose isomerase/GDP-mannose WbpW K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D PAM18_5442 algC; phosphomannomutase AlgC K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D PAM18_5575 gmd; GDP-mannose 4,7-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D PAM18_0220 class II aldolase/adducin domain protein K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] D PAM18_5224 fbp; fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D PAM18_1425 fruK; 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] D PAM18_2699 mtlD; mannitol dehydrogenase K00045 E1.1.1.67; mannitol 2-dehydrogenase [EC:1.1.1.67] D PAM18_1446 algD; GDP-mannose 6-dehydrogenase AlgD K00066 algD; GDP-mannose 6-dehydrogenase [EC:1.1.1.132] D PAM18_1445 alg8; alginate biosynthesis protein Alg8 K19290 alg8; mannuronan synthase [EC:2.4.1.33] D PAM18_1444 alg44; alginate biosynthesis protein Alg44 K19291 alg44; mannuronan synthase [EC:2.4.1.33] D PAM18_1441 algG; alginate-c5-mannuronan-epimerase AlgG K01795 algG; mannuronan 5-epimerase [EC:5.1.3.37] D PAM18_1439 algL; poly(beta-D-mannuronate) lyase K01729 algL; poly(beta-D-mannuronate) lyase [EC:4.2.2.3] D PAM18_0556 fda; fructose-1,6-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D PAM18_4856 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D PAM18_5576 rmd; oxidoreductase Rmd K15856 rmd; GDP-4-dehydro-6-deoxy-D-mannose reductase [EC:1.1.1.281] D PAM18_1426 fruA; phosphotransferase system, fructose-specific IIBC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] C 00052 Galactose metabolism [PATH:paf00052] D PAM18_0872 putative epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D PAM18_3021 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D PAM18_5442 algC; phosphomannomutase AlgC K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D PAM18_1779 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] C 00053 Ascorbate and aldarate metabolism [PATH:paf00053] D PAM18_3022 putative nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D PAM18_1427 putative nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D PAM18_5010 putative aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PAM18_2820 putative enzyme K25260 lxyD; L-lyxonate dehydratase [EC:4.2.1.176] D PAM18_2818 putative aldehyde dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26] D PAM18_3778 putative semialdehyde dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26] C 00500 Starch and sucrose metabolism [PATH:paf00500] D PAM18_3021 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D PAM18_3320 bglX; periplasmic beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21] D PAM18_2873 glgA; glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21] D PAM18_2885 glgB; glycogen branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D PAM18_2895 glgP; glycogen phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1] D PAM18_2886 putative trehalose synthase K05343 treS; maltose alpha-D-glucosyltransferase / alpha-amylase [EC:5.4.99.16 3.2.1.1] D PAM18_2875 putative 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25] D PAM18_2887 putative alpha-amylase family protein K16147 glgE; starch synthase (maltosyl-transferring) [EC:2.4.99.16] D PAM18_2878 putative glycosyl hydrolase K01214 ISA; isoamylase [EC:3.2.1.68] D PAM18_2876 putative glycosyl hydrolase K06044 treY; (1->4)-alpha-D-glucan 1-alpha-D-glucosylmutase [EC:5.4.99.15] D PAM18_2874 putative glycosyl hydrolase K01236 treZ; maltooligosyltrehalose trehalohydrolase [EC:3.2.1.141] D PAM18_2626 treA; trehalase K01194 TREH; alpha,alpha-trehalase [EC:3.2.1.28] D PAM18_5442 algC; phosphomannomutase AlgC K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D PAM18_1779 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D PAM18_4840 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D PAM18_2697 mtlZ; fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:paf00520] D PAM18_2740 chiC; chitinase K01183 E3.2.1.14; chitinase [EC:3.2.1.14] D PAM18_1955 nagZ; beta-hexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D PAM18_1184 putative phosphotransferase system protein K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D PAM18_1187 putative N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] D PAM18_2697 mtlZ; fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D PAM18_1186 putative aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D PAM18_5677 glmS; glucosamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D PAM18_4857 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D PAM18_5680 glmU; glucosamine-1-phosphate acetyltransferase/N-acetylglucosamine-1-phosphate uridyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D PAM18_0647 anmK; anhydro-N-acetylmuramic acid kinase K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170] D PAM18_1800 phosphoglycolate phosphatase K22292 mupP; N-acetyl-D-muramate 6-phosphate phosphatase [EC:3.1.3.105] D PAM18_0597 putative phosphotransferase K07102 amgK; N-acetylmuramate 1-kinase [EC:2.7.1.221] D PAM18_0598 putative nucleotidyl transferase K00992 murU; N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase [EC:2.7.7.99] D PAM18_4541 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D PAM18_1984 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D PAM18_1814 wbpP K02473 wbpP; UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine 4-epimerase [EC:5.1.3.7 5.1.3.-] D PAM18_1813 UDP-glucose/GDP-mannose dehydrogenase-like protein K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-] D PAM18_1432 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase K10011 arnA; UDP-4-amino-4-deoxy-L-arabinose formyltransferase / UDP-glucuronic acid dehydrogenase (UDP-4-keto-hexauronic acid decarboxylating) [EC:2.1.2.13 1.1.1.305] D PAM18_1434 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87] D PAM18_1433 putative glycosyl transferase K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53] D PAM18_1431 putative polysaccharide deacetylase K13014 arnD; undecaprenyl phosphate-alpha-L-ara4FN deformylase [EC:3.5.1.-] D PAM18_1779 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D PAM18_5442 algC; phosphomannomutase AlgC K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D PAM18_3021 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D PAM18_3022 putative nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D PAM18_1427 putative nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D PAM18_0872 putative epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D PAM18_4840 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D PAM18_1435 algA; phosphomannose isomerase/guanosine 5'-diphospho-D-mannose pyrophosphorylase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D PAM18_2808 pslB; putative phosphomannose isomerase/GDP-mannose pyrophosphorylase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D PAM18_5574 wbpW; phosphomannose isomerase/GDP-mannose WbpW K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D PAM18_5575 gmd; GDP-mannose 4,7-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D PAM18_5576 rmd; oxidoreductase Rmd K15856 rmd; GDP-4-dehydro-6-deoxy-D-mannose reductase [EC:1.1.1.281] D PAM18_1446 algD; GDP-mannose 6-dehydrogenase AlgD K00066 algD; GDP-mannose 6-dehydrogenase [EC:1.1.1.132] D PAM18_5355 CDP-6-deoxy-delta-3,4-glucoseen reductase K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1] C 00620 Pyruvate metabolism [PATH:paf00620] D PAM18_4841 acsB; acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PAM18_4152 acsA; acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PAM18_2483 putative AMP-binding enzyme K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PAM18_5129 aceE; pyruvate dehydrogenase subunit E1 K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D PAM18_0785 branched-chain alpha-keto acid dehydrogenase subunit E2 K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D PAM18_5130 aceF; dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D PAM18_3460 lpdG; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PAM18_2790 lpdV; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PAM18_4940 lpd3; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PAM18_5547 adhA; alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D PAM18_1317 adhC; alcohol dehydrogenase class III K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D PAM18_2765 putative alcohol dehydrogenase (Zn-dependent) K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D PAM18_3063 exaA; quinoprotein alcohol dehydrogenase K00114 exaA; alcohol dehydrogenase (cytochrome c) [EC:1.1.2.8] D PAM18_2774 putative cytochrome c precursor K22474 adhB; alcohol dehydrogenase (quinone), cytochrome c subunit [EC:1.1.5.5] D PAM18_4205 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D PAM18_4206 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D PAM18_3633 pykF; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D PAM18_4419 pykA; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D PAM18_1307 accA; acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D PAM18_4958 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D PAM18_0492 hypothetical protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D PAM18_0493 acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D PAM18_4959 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D PAM18_1851 accD; acetyl-CoA carboxylase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D PAM18_4083 putative acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D PAM18_5010 putative aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PAM18_3061 putative aldehyde dehydrogenase K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-] D PAM18_0918 putative aldehyde dehydrogenase K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-] D PAM18_5567 putative coenzyme A transferase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18] D PAM18_4030 pauA; pimeloyl-CoA synthetase K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13] D PAM18_5090 putative acyl-CoA synthetase K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13] D PAM18_2659 lldA; L-lactate dehydrogenase K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3] D PAM18_4879 lldD; L-lactate dehydrogenase K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3] D PAM18_2935 thiamine pyrophosphate protein K00156 poxB; pyruvate dehydrogenase (quinone) [EC:1.2.5.1] D PAM18_5417 poxB; pyruvate dehydrogenase (cytochrome) K00156 poxB; pyruvate dehydrogenase (quinone) [EC:1.2.5.1] D PAM18_4112 ldhA; D-lactate dehydrogenase (fermentative) K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28] D PAM18_4880 putative ferredoxin K18930 dld; D-lactate dehydrogenase D PAM18_4326 gloA2; lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D PAM18_1462 gloA1; lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D PAM18_5225 gloA3; lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D PAM18_3231 putative hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D PAM18_4209 hypothetical protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D PAM18_3897 chaperone protein HchA K05523 hchA; D-lactate dehydratase / protein deglycase [EC:4.2.1.130 3.5.1.124] D PAM18_1044 putative 2-hydroxyacid dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215] D PAM18_1494 malate dehydrogenase K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D PAM18_5161 malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D PAM18_4984 carboxyphosphonoenolpyruvate phosphonomutase K01003 bcpA; oxaloacetate decarboxylase [EC:4.1.1.112] D PAM18_5556 acetyl-CoA carboxylase subunit A K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1] D PAM18_5555 pyruvate carboxylase subunit B K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1] D PAM18_1513 mqoA; malate:quinone oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4] D PAM18_4737 mqoB; malate:quinone oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4] D PAM18_4423 putative fumarase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D PAM18_4186 fumC2; fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D PAM18_4561 fumC; fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D PAM18_1259 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D PAM18_5311 pckA; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D PAM18_3276 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D PAM18_0481 glcB; malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9] D PAM18_3044 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_3310 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_1015 putative acyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_2485 putative acyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_4894 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_1146 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D PAM18_3816 putative 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:paf00630] D PAM18_2341 aceA; isocitrate lyase K01637 E4.1.3.1; isocitrate lyase [EC:4.1.3.1] D PAM18_4841 acsB; acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PAM18_4152 acsA; acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PAM18_2483 putative AMP-binding enzyme K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PAM18_0481 glcB; malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9] D PAM18_3467 gltA; type II citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D PAM18_3486 acnA; aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3] D PAM18_3259 acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D PAM18_3044 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_3310 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_1015 putative acyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_2485 putative acyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_4894 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_1666 phaJ1; (R)-specific enoyl-CoA hydratase K17865 croR; 3-hydroxybutyryl-CoA dehydratase [EC:4.2.1.55] D PAM18_5475 glcD; glycolate oxidase subunit GlcD K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14] D PAM18_5474 glcE; glycolate oxidase FAD binding subunit K11472 glcE; glycolate dehydrogenase FAD-binding subunit [EC:1.1.99.14] D PAM18_5473 glcF; glycolate oxidase iron-sulfur subunit K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14] D PAM18_4707 katB; catalase K03781 katE; catalase [EC:1.11.1.6] D PAM18_2892 katE; hydroperoxidase II K03781 katE; catalase [EC:1.11.1.6] D PAM18_0694 katA; catalase K03781 katE; catalase [EC:1.11.1.6] D PAM18_1044 putative 2-hydroxyacid dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215] D PAM18_4721 hprA; glycerate dehydrogenase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29] D PAM18_1987 putative hydrolase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D PAM18_0609 phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D PAM18_0066 putative phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D PAM18_0291 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAM18_0293 spuB; putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAM18_1609 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAM18_3004 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAM18_3482 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAM18_5233 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAM18_5629 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAM18_5644 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAM18_4696 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D PAM18_2589 glyA2; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D PAM18_5535 glyA1; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D PAM18_2588 gcvP2; glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D PAM18_5331 gcvP1; glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D PAM18_2591 gcvT2; glycine cleavage system protein T2 K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D PAM18_5333 gcvT; glycine cleavage system aminomethyltransferase T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D PAM18_3460 lpdG; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PAM18_2790 lpdV; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PAM18_4940 lpd3; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PAM18_2587 gcvH2; glycine cleavage system protein H K02437 gcvH; glycine cleavage system H protein D PAM18_5332 gcvH1; glycine cleavage system protein H K02437 gcvH; glycine cleavage system H protein D PAM18_4905 putative glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D PAM18_3629 gcl; glyoxylate carboligase K01608 gcl; tartronate-semialdehyde synthase [EC:4.1.1.47] D PAM18_3630 putative hydroxypyruvate isomerase K01816 hyi; hydroxypyruvate isomerase [EC:5.3.1.22] D PAM18_3631 putative oxidoreductase K00042 garR; 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60] D PAM18_3993 Putative glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D PAM18_3632 putative hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D PAM18_1791 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D PAM18_1832 putative aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D PAM18_4921 fdnG; formate dehydrogenase-O, major subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D PAM18_4922 Twin-arginine translocation pathway signal K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D PAM18_4920 fdnH; nitrate-inducible formate dehydrogenase, beta subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit D PAM18_4919 fdnI; nitrate-inducible formate dehydrogenase, gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma D PAM18_2962 kynB; kynurenine formamidase, KynB K07130 kynB; arylformamidase [EC:3.5.1.9] D PAM18_4404 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D PAM18_5540 purU2; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D PAM18_5205 hutG; N-formylglutamate amidohydrolase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68] C 00640 Propanoate metabolism [PATH:paf00640] D PAM18_4841 acsB; acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PAM18_4152 acsA; acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PAM18_2483 putative AMP-binding enzyme K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PAM18_1417 putative acetyl-coa synthetase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17] D PAM18_4030 pauA; pimeloyl-CoA synthetase K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13] D PAM18_5090 putative acyl-CoA synthetase K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13] D PAM18_4205 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D PAM18_4206 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D PAM18_2793 bkdA1; 2-oxoisovalerate dehydrogenase (alpha subunit) K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D PAM18_1548 putative pyruvate dehydrogenase E1 component, alpha subunit K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D PAM18_2792 bkdA2; 2-oxoisovalerate dehydrogenase (beta subunit) K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D PAM18_1549 putative pyruvate dehydrogenase E1 component, beta chain K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D PAM18_2791 bkdB; branched-chain alpha-keto acid dehydrogenase subunit E2 K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D PAM18_1550 branched-chain alpha-keto acid dehydrogenase subunit E2 K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D PAM18_3460 lpdG; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PAM18_2790 lpdV; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PAM18_4940 lpd3; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PAM18_2486 putative acyl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D PAM18_3211 putative oxidoreductase K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-] D PAM18_3418 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D PAM18_1394 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D PAM18_1946 fadB; multifunctional fatty acid oxidation complex subunit alpha K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D PAM18_3309 putative 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D PAM18_1307 accA; acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D PAM18_4958 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D PAM18_0492 hypothetical protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D PAM18_0493 acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D PAM18_4959 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D PAM18_1851 accD; acetyl-CoA carboxylase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D PAM18_0134 beta alanine--pyruvate transaminase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D PAM18_5433 omega amino acid--pyruvate transaminase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D PAM18_3459 sucC; succinyl-CoA synthetase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D PAM18_3458 sucD; succinyl-CoA synthetase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D PAM18_4292 putative aldehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D PAM18_0132 putative aldehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D PAM18_1415 mmsA; methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D PAM18_4242 prpC; methylcitrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5] D PAM18_4245 prpD; 2-methylcitrate dehydratase K01720 prpD; 2-methylcitrate dehydratase [EC:4.2.1.79] D PAM18_4243 aconitate hydratase K20455 acnD; 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) [EC:4.2.1.117] D PAM18_4244 hypothetical protein K09788 prpF; 2-methylaconitate isomerase [EC:5.3.3.-] D PAM18_3259 acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D PAM18_4241 prpB; 2-methylisocitrate lyase K03417 prpB; methylisocitrate lyase [EC:4.1.3.30] C 00650 Butanoate metabolism [PATH:paf00650] D PAM18_3044 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_3310 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_1015 putative acyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_2485 putative acyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_4894 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_1395 3-hydroxy-acyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D PAM18_3419 3-hydroxy-acyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D PAM18_1946 fadB; multifunctional fatty acid oxidation complex subunit alpha K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D PAM18_3309 putative 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D PAM18_3418 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D PAM18_1394 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D PAM18_2486 putative acyl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D PAM18_2011 trans-2-enoyl-CoA reductase K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44] D PAM18_1666 phaJ1; (R)-specific enoyl-CoA hydratase K17865 croR; 3-hydroxybutyryl-CoA dehydratase [EC:4.2.1.55] D PAM18_5171 phaC1; poly(3-hydroxyalkanoic acid) synthase 1 K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304] D PAM18_5173 phaC2; poly(3-hydroxyalkanoic acid) synthase 2 K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304] D PAM18_0222 putative CoA transferase, subunit A K01039 gctA; glutaconate CoA-transferase, subunit A [EC:2.8.3.12] D PAM18_0223 putative CoA transferase, subunit B K01040 gctB; glutaconate CoA-transferase, subunit B [EC:2.8.3.12] D PAM18_3464 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D PAM18_3463 sdhB; succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D PAM18_3466 sdhC; succinate dehydrogenase (C subunit) K00241 sdhC; succinate dehydrogenase cytochrome b subunit D PAM18_3465 sdhD; succinate dehydrogenase (D subunit) K00242 sdhD; succinate dehydrogenase membrane anchor subunit D PAM18_0261 gabT; 4-aminobutyrate aminotransferase K14268 davT; 5-aminovalerate/4-aminobutyrate aminotransferase [EC:2.6.1.48 2.6.1.19] D PAM18_0260 gabD; succinate-semialdehyde dehydrogenase I K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D PAM18_5567 putative coenzyme A transferase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18] D PAM18_3034 liuE; hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D PAM18_3046 putative CoA transferase, subunit A K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] D PAM18_3045 putative CoA transferase, subunit B K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] D PAM18_3048 acetoacetyl-CoA synthetase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16] D PAM18_3042 bdhA; 3-hydroxybutyrate dehydrogenase K00019 BDH1; 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30] D PAM18_3009 thiamine pyrophosphate protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D PAM18_0757 acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D PAM18_3714 hypothetical protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D PAM18_4803 ilvI; acetolactate synthase 3 catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D PAM18_4802 ilvH; acetolactate synthase 3 regulatory subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D PAM18_0843 putative alcohol dehydrogenase (Zn-dependent) K00004 BDH; (R,R)-butanediol dehydrogenase / meso-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.4 1.1.1.- 1.1.1.303] D PAM18_0784 2,3-butanediol dehydrogenase K00004 BDH; (R,R)-butanediol dehydrogenase / meso-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.4 1.1.1.- 1.1.1.303] D PAM18_0789 putative short-chain dehydrogenase K03366 butA; meso-butanediol dehydrogenase / (S,S)-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.- 1.1.1.76 1.1.1.304] C 00660 C5-Branched dibasic acid metabolism [PATH:paf00660] D PAM18_3009 thiamine pyrophosphate protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D PAM18_0757 acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D PAM18_3714 hypothetical protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D PAM18_4803 ilvI; acetolactate synthase 3 catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D PAM18_4802 ilvH; acetolactate synthase 3 regulatory subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D PAM18_4157 putative acyl-CoA transferases/carnitine dehydratase K18289 ict-P; itaconate CoA-transferase [EC:2.8.3.- 2.8.3.22] D PAM18_3459 sucC; succinyl-CoA synthetase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D PAM18_3458 sucD; succinyl-CoA synthetase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D PAM18_4161 hypothetical protein K18291 ich-P; itaconyl-CoA hydratase / mesaconyl-C4 CoA hydratase [EC:4.2.1.56 4.2.1.-] D PAM18_4156 putative acyl-CoA lyase beta chain K18292 E4.1.3.25; (S)-citramalyl-CoA lyase [EC:4.1.3.25] D PAM18_1842 leuC; isopropylmalate isomerase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D PAM18_1843 leuD; isopropylmalate isomerase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D PAM18_1845 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] C 00562 Inositol phosphate metabolism [PATH:paf00562] D PAM18_4196 plcH; hemolytic phospholipase C precursor K01114 plc; phospholipase C [EC:3.1.4.3] D PAM18_1646 plcN; non-hemolytic phospholipase C precursor K01114 plc; phospholipase C [EC:3.1.4.3] D PAM18_1120 extragenic suppressor protein SuhB K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D PAM18_4292 putative aldehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D PAM18_0132 putative aldehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D PAM18_1415 mmsA; methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D PAM18_4856 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:paf00190] D PAM18_2338 nuoA; NADH dehydrogenase subunit A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2] D PAM18_3158 putative NADH-ubiquinone/plastoquinone oxidoreductase K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2] D PAM18_2337 nuoB; NADH dehydrogenase subunit B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2] D PAM18_2336 nuoD; bifunctional NADH:ubiquinone oxidoreductase subunit C/D K13378 nuoCD; NADH-quinone oxidoreductase subunit C/D [EC:7.1.1.2] D PAM18_2335 nuoE; NADH dehydrogenase subunit E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2] D PAM18_2334 nuoF; NADH dehydrogenase I subunit F K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2] D PAM18_2333 nuoG; NADH dehydrogenase subunit G K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2] D PAM18_2332 nuoH; NADH dehydrogenase subunit H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2] D PAM18_2331 nuoI; NADH dehydrogenase subunit I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2] D PAM18_2330 nuoJ; NADH dehydrogenase subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2] D PAM18_2329 nuoK; NADH dehydrogenase subunit K K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2] D PAM18_2328 nuoL; NADH dehydrogenase subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2] D PAM18_2327 nuoM; NADH dehydrogenase subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2] D PAM18_2326 nuoN; NADH dehydrogenase subunit N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2] D PAM18_4630 ndh; NADH dehydrogenase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D PAM18_2281 putative NADH dehydrogenase, FAD-containing subunit K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D PAM18_3464 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D PAM18_3463 sdhB; succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D PAM18_3466 sdhC; succinate dehydrogenase (C subunit) K00241 sdhC; succinate dehydrogenase cytochrome b subunit D PAM18_3465 sdhD; succinate dehydrogenase (D subunit) K00242 sdhD; succinate dehydrogenase membrane anchor subunit D PAM18_4522 putative iron-sulfur protein K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D PAM18_4521 putative cytochrome b K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D PAM18_4520 putative cytochrome c1 precursor K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit D PAM18_0115 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D PAM18_3581 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D PAM18_3582 cyoD; cytochrome o ubiquinol oxidase subunit IV K02300 cyoD; cytochrome o ubiquinol oxidase subunit IV D PAM18_0110 coIII; cytochrome c oxidase, subunit III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9] D PAM18_0108 coxA; cytochrome c oxidase, subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9] D PAM18_0107 coxB; cytochrome c oxidase, subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9] D PAM18_0109 cytochrome c oxidase assembly protein K02258 COX11; cytochrome c oxidase assembly protein subunit 11 D PAM18_0114 putative cytochrome oxidase assembly protein K02259 COX15; heme a synthase [EC:1.17.99.9] D PAM18_3186 putative cytochrome oxidase subunit K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9] D PAM18_3490 putative cytochrome oxidase subunit (cbb3-type) K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9] D PAM18_3494 putative cytochrome oxidase subunit (cbb3-type) K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9] D PAM18_0806 cytochrome c oxidase subunit (cbb3-type) K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9] D PAM18_3491 putative cytochrome c oxidase subunit K00405 ccoO; cytochrome c oxidase cbb3-type subunit II D PAM18_3495 putative cytochrome c oxidase subunit K00405 ccoO; cytochrome c oxidase cbb3-type subunit II D PAM18_3492 putative cytochrome c oxidase subunit K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV D PAM18_3496 putative cytochrome c oxidase subunit K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV D PAM18_3493 putative cytochrome c K00406 ccoP; cytochrome c oxidase cbb3-type subunit III D PAM18_3497 putative cytochrome c K00406 ccoP; cytochrome c oxidase cbb3-type subunit III D PAM18_3583 cyoC; cytochrome o ubiquinol oxidase subunit III K02299 cyoC; cytochrome o ubiquinol oxidase subunit III D PAM18_3584 cyoB; cytochrome o ubiquinol oxidase subunit I K02298 cyoB; cytochrome o ubiquinol oxidase subunit I [EC:7.1.1.3] D PAM18_3585 cyoA; cytochrome o ubiquinol oxidase subunit II K02297 cyoA; cytochrome o ubiquinol oxidase subunit II [EC:7.1.1.3] D PAM18_1010 cioA; cyanide insensitive terminal oxidase K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D PAM18_1011 cioB; cyanide insensitive terminal oxidase K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D PAM18_0517 nirM; cytochrome c-551 precursor K08738 CYC; cytochrome c D PAM18_5684 atpA; F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D PAM18_5682 atpD; F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D PAM18_5683 atpG; F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D PAM18_5685 atpH; F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D PAM18_5681 atpC; F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D PAM18_5688 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a D PAM18_5686 atpF; F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b D PAM18_5687 atpE; F0F1 ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c D PAM18_0909 ppa; inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1] D PAM18_5361 ppk; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D PAM18_2606 hypothetical protein K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D PAM18_0142 hypothetical protein K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation in photosynthetic organisms C 00720 Carbon fixation pathways in prokaryotes C 00680 Methane metabolism [PATH:paf00680] D PAM18_5541 fdhA; glutathione-independent formaldehyde dehydrogenase K00148 fdhA; glutathione-independent formaldehyde dehydrogenase [EC:1.2.1.46] D PAM18_1317 adhC; alcohol dehydrogenase class III K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D PAM18_1318 putative esterase K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12] D PAM18_4921 fdnG; formate dehydrogenase-O, major subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D PAM18_4922 Twin-arginine translocation pathway signal K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D PAM18_4920 fdnH; nitrate-inducible formate dehydrogenase, beta subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit D PAM18_4919 fdnI; nitrate-inducible formate dehydrogenase, gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma D PAM18_4696 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D PAM18_2589 glyA2; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D PAM18_5535 glyA1; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D PAM18_4721 hprA; glycerate dehydrogenase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29] D PAM18_3632 putative hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D PAM18_1311 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D PAM18_1259 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D PAM18_0556 fda; fructose-1,6-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D PAM18_5224 fbp; fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D PAM18_4205 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D PAM18_4206 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D PAM18_4841 acsB; acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PAM18_4152 acsA; acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PAM18_2483 putative AMP-binding enzyme K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PAM18_3276 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D PAM18_5245 pgm; phosphoglyceromutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D PAM18_0312 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D PAM18_1805 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D PAM18_5071 putative phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D PAM18_3289 thrH; phosphoserine phosphatase K02203 thrH; phosphoserine / homoserine phosphotransferase [EC:3.1.3.3 2.7.1.39] C 00910 Nitrogen metabolism [PATH:paf00910] D PAM18_3263 nasA; nitrate transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D PAM18_1065 narK1; nitrite extrusion protein 1 K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D PAM18_1066 narK2; nitrite extrusion protein 2 K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D PAM18_1067 narG; respiratory nitrate reductase alpha chain K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-] D PAM18_1068 narH; respiratory nitrate reductase beta chain K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-] D PAM18_1070 narI; respiratory nitrate reductase gamma chain K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-] D PAM18_3859 napA; nitrate reductase catalytic subunit K02567 napA; nitrate reductase (cytochrome) [EC:1.9.6.1] D PAM18_3860 napB; cytochrome c-type protein NapB precursor K02568 napB; nitrate reductase (cytochrome), electron transfer subunit D PAM18_3267 assimilatory nitrate reductase K00372 nasC; assimilatory nitrate reductase catalytic subunit [EC:1.7.99.-] D PAM18_3265 nirB; assimilatory nitrite reductase large subunit K26139 nasD; nitrite reductase [NAD(P)H] large subunit [EC:1.7.1.4] D PAM18_3266 nirD; assimilatory nitrite reductase small subunit K26138 nasE; nitrite reductase [NAD(P)H] small subunit [EC:1.7.1.4] D PAM18_0518 nirS; nitrite reductase precursor K15864 nirS; nitrite reductase (NO-forming) / hydroxylamine reductase [EC:1.7.2.1 1.7.99.1] D PAM18_0523 norB; nitric-oxide reductase subunit B K04561 norB; nitric oxide reductase subunit B [EC:1.7.2.5] D PAM18_0522 norC; nitric-oxide reductase subunit C K02305 norC; nitric oxide reductase subunit C D PAM18_1575 nosZ; nitrous-oxide reductase K00376 nosZ; nitrous-oxide reductase [EC:1.7.2.4] D PAM18_0641 putative 2-nitropropane dioxygenase K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16] D PAM18_0735 hypothetical protein K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16] D PAM18_1895 gdhB; NAD-dependent glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D PAM18_4681 gdhA; glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D PAM18_0291 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAM18_0293 spuB; putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAM18_1609 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAM18_3004 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAM18_3482 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAM18_5233 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAM18_5629 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAM18_5644 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAM18_5151 gltB; glutamate synthase subunit alpha K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D PAM18_5150 gltD; glutamate synthase subunit beta K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D PAM18_2992 cynS; cyanate hydratase K01725 cynS; cyanate lyase [EC:4.2.1.104] D PAM18_5290 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] D PAM18_4782 putative carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] D PAM18_0104 putative carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] D PAM18_2991 cynT; carbonate dehydratase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] C 00920 Sulfur metabolism [PATH:paf00920] D PAM18_3638 cysP; sulfate-binding protein of ABC transporter K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein D PAM18_0278 sbp; sulfate-binding protein precursor K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D PAM18_0277 cysT; sulfate transport protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D PAM18_0276 cysW; sulfate transport protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D PAM18_0275 cysA; sulfate transport protein CysA K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D PAM18_1002 putative periplasmic taurine-binding protein precursor K15551 tauA; taurine transport system substrate-binding protein D PAM18_1004 putative permease of ABC taurine transporter K15552 tauC; taurine transport system permease protein D PAM18_1003 putative ATP-binding component of ABC taurine transporter K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7] D PAM18_1005 tauD; taurine dioxygenase K03119 tauD; taurine dioxygenase [EC:1.14.11.17] D PAM18_2379 putative periplasmic aliphatic sulfonate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D PAM18_2380 putative periplasmic aliphatic sulfonate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D PAM18_2381 putative periplasmic aliphatic sulfonate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D PAM18_1516 putative sulfonate binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D PAM18_1520 putative ABC-type transporter periplasmic sulfonate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D PAM18_0186 putative binding protein component of ABC transporter K15553 ssuA; sulfonate transport system substrate-binding protein D PAM18_2376 putative periplasmic aliphatic sulfonate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D PAM18_2731 putative ABC transporter, periplasmic binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D PAM18_2744 hypothetical protein K15553 ssuA; sulfonate transport system substrate-binding protein D PAM18_1517 putative permease of ABC transporter K15554 ssuC; sulfonate transport system permease protein D PAM18_1522 putative permease of ABC transporter K15554 ssuC; sulfonate transport system permease protein D PAM18_0185 putative permease of ABC transporter K15554 ssuC; sulfonate transport system permease protein D PAM18_2733 putative permease of ABC transporter K15554 ssuC; sulfonate transport system permease protein D PAM18_2745 putative permease of ABC transporter K15554 ssuC; sulfonate transport system permease protein D PAM18_0184 putative ATP-binding component of ABC transporter K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D PAM18_1518 putative ATP-binding component of ABC transporter K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D PAM18_1523 ssuB; aliphatic sulfonates transport ATP-binding subunit K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D PAM18_2732 putative ATP-binding component of ABC transporter K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D PAM18_2746 putative ATP-binding component of ABC transporter K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D PAM18_2375 putative flavin-dependent oxidoreductase K04091 ssuD; alkanesulfonate monooxygenase [EC:1.14.14.5 1.14.14.34] D PAM18_2377 putative lavin-dependent oxidoreductase K04091 ssuD; alkanesulfonate monooxygenase [EC:1.14.14.5 1.14.14.34] D PAM18_1521 ssuD; alkanesulfonate monooxygenase K04091 ssuD; alkanesulfonate monooxygenase [EC:1.14.14.5 1.14.14.34] D PAM18_2685 msuD; methanesulfonate sulfonatase MsuD K04091 ssuD; alkanesulfonate monooxygenase [EC:1.14.14.5 1.14.14.34] D PAM18_2684 msuE; NADH-dependent FMN reductase MsuE K00299 ssuE; FMN reductase [EC:1.5.1.38] D PAM18_1519 NAD(P)H-dependent FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38] D PAM18_4533 cysN; bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D PAM18_4534 cysD; sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D PAM18_5293 cysQ; CysQ protein K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D PAM18_3290 cysH; phosphoadenosine phosphosulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10] D PAM18_4604 putative oxidoreductase K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2] D PAM18_3206 cysI; sulfite reductase K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2] D PAM18_0809 putative sulfite or nitrite reductase K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2] D PAM18_2696 putative transmembrane protein K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4] D PAM18_2471 hypothetical protein K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4] D PAM18_3737 putative 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D PAM18_5067 rhdA; thiosulfate:cyanide sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D PAM18_0590 glpE; thiosulfate sulfurtransferase K02439 glpE; thiosulfate sulfurtransferase [EC:2.8.1.1] D PAM18_2938 acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D PAM18_1122 cysE; O-acetylserine synthase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D PAM18_2939 cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47] D PAM18_3983 putative cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47] D PAM18_2263 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D PAM18_0389 metX; homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D PAM18_1856 metZ; O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-] D PAM18_0986 putative Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase K17228 sfnG; dimethylsulfone monooxygenase [EC:1.14.14.35] D PAM18_0739 acyl-CoA synthetase K20034 dmdB; 3-(methylthio)propionyl---CoA ligase [EC:6.2.1.44] D PAM18_3745 putative acyl-CoA dehydrogenase K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41] D PAM18_0506 putative acyl-CoA dehydrogenase K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41] D PAM18_5306 putative acyl-CoA dehydrogenase K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41] D PAM18_0738 putative acyl-CoA dehydrogenase K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41] D PAM18_0507 putative acyl-CoA dehydrogenase K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41] D PAM18_0505 putative acyl-CoA dehydrogenase K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:paf00061] D PAM18_1307 accA; acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D PAM18_4958 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D PAM18_0492 hypothetical protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D PAM18_0493 acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D PAM18_4959 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D PAM18_1851 accD; acetyl-CoA carboxylase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D PAM18_1995 acpP; acyl carrier protein K02078 acpP; acyl carrier protein D PAM18_1631 putative acyl carrier protein K02078 acpP; acyl carrier protein D PAM18_3172 putative acyl carrier protein K02078 acpP; acyl carrier protein D PAM18_1993 fabD; malonyl-CoA-[acyl-carrier-protein] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D PAM18_3954 putative 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D PAM18_1632 fabH2; 3-oxoacyl-(acyl carrier protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D PAM18_5291 putative beta-ketoacyl synthase K18473 fabY; acetoacetyl-[acyl-carrier protein] synthase [EC:2.3.1.180] D PAM18_3438 fabB; 3-oxoacyl-(acyl carrier protein) synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D PAM18_0100 3-oxoacyl-(acyl carrier protein) synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D PAM18_3535 fabF2; 3-oxoacyl-(acyl carrier protein) synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D PAM18_1996 fabF1; 3-oxoacyl-(acyl carrier protein) synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D PAM18_4480 fabG; 3-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PAM18_3661 short chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PAM18_0182 fabG; 3-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PAM18_1994 fabG; 3-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PAM18_0851 3-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PAM18_4895 fabG; 3-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PAM18_5646 putative short-chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PAM18_3437 fabA; 3-hydroxydecanoyl-(acyl carrier protein) dehydratase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14] D PAM18_1301 fabZ; (3R)-hydroxymyristoyl-ACP dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D PAM18_3238 fabI; NADH-dependent enoyl-ACP reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D PAM18_2011 trans-2-enoyl-CoA reductase K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44] D PAM18_1668 fadD2; acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D PAM18_1669 fadD1; acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D PAM18_3430 putative AMP-binding enzyme K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:paf00071] D PAM18_3044 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_3310 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_1015 putative acyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_2485 putative acyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_4894 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_1947 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D PAM18_1511 putative acyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D PAM18_2022 putative acyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D PAM18_1946 fadB; multifunctional fatty acid oxidation complex subunit alpha K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D PAM18_3309 putative 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D PAM18_3418 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D PAM18_1394 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D PAM18_2486 putative acyl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D PAM18_2488 putative acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D PAM18_4160 putative acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D PAM18_3513 putative acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D PAM18_5107 putative acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D PAM18_5091 putative acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D PAM18_3846 putative acyl-CoA dehydrogenase K00255 ACADL; long-chain-acyl-CoA dehydrogenase [EC:1.3.8.8] D PAM18_4526 putative acyl-CoA dehydrogenase K00255 ACADL; long-chain-acyl-CoA dehydrogenase [EC:1.3.8.8] D PAM18_2148 fadE; acyl-CoA dehydrogenase K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-] D PAM18_0445 gcdH; glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D PAM18_1668 fadD2; acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D PAM18_1669 fadD1; acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D PAM18_3430 putative AMP-binding enzyme K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D PAM18_2419 alkB1; alkane-1-monooxygenase K00496 alkB1_2; alkane 1-monooxygenase [EC:1.14.15.3] D PAM18_3523 alkB2; alkane-1-monooxygenase 2 K00496 alkB1_2; alkane 1-monooxygenase [EC:1.14.15.3] D PAM18_5469 putative rubredoxin reductase K05297 rubB; rubredoxin---NAD+ reductase [EC:1.18.1.1] D PAM18_1317 adhC; alcohol dehydrogenase class III K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D PAM18_5547 adhA; alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D PAM18_5010 putative aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:paf00561] D PAM18_3993 Putative glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D PAM18_3632 putative hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D PAM18_5010 putative aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PAM18_2765 putative alcohol dehydrogenase (Zn-dependent) K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D PAM18_3644 putative carbohydrate kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D PAM18_1403 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D PAM18_1406 putative carbohydrate kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D PAM18_1273 plsB; glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] D PAM18_1992 plsX; putative glycerol-3-phosphate acyltransferase PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D PAM18_0582 putative glycerol-3-phosphate acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D PAM18_0005 lptA; lysophosphatidic acid acyltransferase, LptA K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D PAM18_1382 dgkA; diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D PAM18_2101 lipA; lactonizing lipase precursor K01046 lip; triacylglycerol lipase [EC:3.1.1.3] D PAM18_4923 lipC; lipase LipC K01046 lip; triacylglycerol lipase [EC:3.1.1.3] D PAM18_1753 putative glycosyl transferase K27597 K27597; 1,2-diacylglycerol 3-alpha-glucosyltransferase/glucuronosyltransferase [EC:2.4.1.337 2.4.1.-] C 00564 Glycerophospholipid metabolism [PATH:paf00564] D PAM18_3433 gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D PAM18_3642 putative oxidoreductase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D PAM18_1935 putative FAD-dependent glycerol-3-phosphate dehydrogenase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D PAM18_1401 glpD; glycerol-3-phosphate dehydrogenase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D PAM18_1273 plsB; glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] D PAM18_0582 putative glycerol-3-phosphate acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D PAM18_0005 lptA; lysophosphatidic acid acyltransferase, LptA K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D PAM18_1382 dgkA; diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D PAM18_4196 plcH; hemolytic phospholipase C precursor K01114 plc; phospholipase C [EC:3.1.4.3] D PAM18_1646 plcN; non-hemolytic phospholipase C precursor K01114 plc; phospholipase C [EC:3.1.4.3] D PAM18_2689 putative glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D PAM18_1970 putative phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D PAM18_0345 glpQ; glycerophosphoryl diester phosphodiesterase, periplasmic K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D PAM18_4901 putative glycerolphosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D PAM18_0916 eutB; ethanolamine ammonia-lyase large subunit K03735 eutB; ethanolamine ammonia-lyase large subunit [EC:4.3.1.7] D PAM18_0915 ethanolamine ammonia-lyase small subunit K03736 eutC; ethanolamine ammonia-lyase small subunit [EC:4.3.1.7] D PAM18_2502 putative phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D PAM18_1295 cdsA; phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D PAM18_1081 pcs; phosphatidylcholine synthase K01004 pcs; phosphatidylcholine synthase [EC:2.7.8.24] D PAM18_4800 pssA; phosphatidylserine synthase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D PAM18_5068 psd; phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65] D PAM18_2409 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D PAM18_2497 putative CDP-alcohol phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D PAM18_0890 pgpA; phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27] D PAM18_5669 putative phosphatase K18697 pgpC; phosphatidylglycerophosphatase C [EC:3.1.3.27] D PAM18_5513 cls; cardiolipin synthetase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] D PAM18_2883 cardiolipin synthase 2 K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] D PAM18_4429 putative phospholipase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] D PAM18_5430 putative cardiolipin synthase K06132 clsC; cardiolipin synthase C [EC:2.7.8.-] C 00565 Ether lipid metabolism [PATH:paf00565] D PAM18_1934 putative oxidase K00803 AGPS; alkyldihydroxyacetonephosphate synthase [EC:2.5.1.26] D PAM18_4196 plcH; hemolytic phospholipase C precursor K01114 plc; phospholipase C [EC:3.1.4.3] D PAM18_1646 plcN; non-hemolytic phospholipase C precursor K01114 plc; phospholipase C [EC:3.1.4.3] C 00600 Sphingolipid metabolism [PATH:paf00600] D PAM18_4195 alkaline ceramidase K12349 ASAH2; neutral ceramidase [EC:3.5.1.23] C 00590 Arachidonic acid metabolism D PAM18_3864 putative lipoxygenase K19246 loxA; arachidonate 15-lipoxygenase [EC:1.13.11.33] C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism [PATH:paf00592] D PAM18_1947 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D PAM18_1511 putative acyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D PAM18_2022 putative acyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01040 Biosynthesis of unsaturated fatty acids [PATH:paf01040] D PAM18_0281 desA; delta-9 fatty acid desaturase, DesA K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1] D PAM18_5000 desB; acyl-CoA delta-9-desaturase, DesB K22769 desA3; NADPH-dependent stearoyl-CoA 9-desaturase [EC:1.14.19.-] D PAM18_5001 putative oxidoreductase K22770 K22770; stearoyl-CoA 9-desaturase NADPH oxidoreductase D PAM18_2107 tesA; acyl-CoA thioesterase I precursor K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D PAM18_0998 tesB; acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-] D PAM18_5491 putative long-chain acyl-CoA thioester hydrolase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-] B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:paf00230] D PAM18_5082 aspP; adenosine diphosphate sugar pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D PAM18_5294 nudE; ADP-ribose diphosphatase NudE K08312 nudE; ADP compounds hydrolase [EC:3.6.1.-] D PAM18_5442 algC; phosphomannomutase AlgC K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D PAM18_4767 prs; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D PAM18_1855 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D PAM18_4966 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D PAM18_4094 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D PAM18_1194 purT; phosphoribosylglycinamide formyltransferase 2 K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21] D PAM18_1181 purL; phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] D PAM18_4093 purM; phosphoribosylaminoimidazole synthetase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D PAM18_5545 purK; phosphoribosylaminoimidazole carboxylase ATPase subunit K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] D PAM18_5546 purE; phosphoribosylaminoimidazole carboxylase, catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D PAM18_4035 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D PAM18_2346 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D PAM18_1469 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D PAM18_1470 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D PAM18_4965 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D PAM18_3506 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D PAM18_1321 surE; stationary phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D PAM18_5295 putative hydrolase K20881 yrfG; GMP/IMP 5'-nucleotidase [EC:3.1.3.-] D PAM18_3474 hypothetical protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2] D PAM18_3662 hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D PAM18_4635 hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D PAM18_4742 hypoxanthine-guanine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] D PAM18_1169 guaB; inosine 5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D PAM18_1131 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D PAM18_0386 putative deoxyribonucleotide triphosphate pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D PAM18_5418 xanthine phosphoribosyltransferase K03816 xpt; xanthine phosphoribosyltransferase [EC:2.4.2.22] D PAM18_3524 xdhA; xanthine dehydrogenase K13481 xdhA; xanthine dehydrogenase small subunit [EC:1.17.1.4] D PAM18_3525 xdhB; xanthine dehydrogenase K13482 xdhB; xanthine dehydrogenase large subunit [EC:1.17.1.4] D PAM18_3106 putative hydroxylase large subunit K11177 yagR; xanthine dehydrogenase YagR molybdenum-binding subunit [EC:1.17.1.4] D PAM18_3107 putative hydroxylase molybdopterin-containing subunit K11178 yagS; xanthine dehydrogenase YagS FAD-binding subunit [EC:1.17.1.4] D PAM18_3108 putative ferredoxin K13483 yagT; xanthine dehydrogenase YagT iron-sulfur-binding subunit D PAM18_1170 guaA; GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D PAM18_3527 guanine deaminase K01487 guaD; guanine deaminase [EC:3.5.4.3] D PAM18_0136 guanine deaminase K01487 guaD; guanine deaminase [EC:3.5.4.3] D PAM18_2540 putative deaminase K01487 guaD; guanine deaminase [EC:3.5.4.3] D PAM18_5456 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D PAM18_3877 nrdA; ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D PAM18_5618 nrdJa; NrdJa K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D PAM18_3878 nrdB; ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D PAM18_3120 anaerobic ribonucleoside triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D PAM18_1917 deoxyguanosinetriphosphate triphosphohydrolase-like protein K01129 dgt; dGTPase [EC:3.1.5.1] D PAM18_3908 dgt; deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1] D PAM18_5458 spoT; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D PAM18_5360 ppx; exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D PAM18_4105 relA; GTP pyrophosphokinase K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5] D PAM18_1754 cyaB; CyaB K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D PAM18_5392 cyaA; adenylate cyclase K05851 cyaA; adenylate cyclase, class 1 [EC:4.6.1.1] D PAM18_5049 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D PAM18_0969 amn; AMP nucleosidase K01241 amn; AMP nucleosidase [EC:3.2.2.4] D PAM18_0824 putative decarboxylase family protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-] D PAM18_0149 adenosine deaminase K21053 ade; adenine deaminase [EC:3.5.4.2] D PAM18_1260 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D PAM18_4104 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D PAM18_5080 putative phosphohydrolase K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53] D PAM18_0591 apaH; diadenosine tetraphosphatase K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41] D PAM18_4533 cysN; bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D PAM18_4534 cysD; sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D PAM18_3613 putative transthyretin family protein K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17] D PAM18_3615 hypothetical protein K13485 PRHOXNB; 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase [EC:4.1.1.97] D PAM18_3614 putative polysaccharide deacetylase K16842 hpxB; allantoinase [EC:3.5.2.5] D PAM18_3616 alc; allantoicase K01477 alc; allantoicase [EC:3.5.3.4] D PAM18_3892 hypothetical protein K14977 ylbA; (S)-ureidoglycine aminohydrolase [EC:3.5.3.26] D PAM18_3617 ureidoglycolate hydrolase K01483 allA; ureidoglycolate lyase [EC:4.3.2.3] D PAM18_4980 ureC; urease subunit alpha K01428 ureC; urease subunit alpha [EC:3.5.1.5] D PAM18_4979 ureB; urease subunit beta K01429 ureB; urease subunit beta [EC:3.5.1.5] D PAM18_4977 ureA; urease subunit gamma K01430 ureA; urease subunit gamma [EC:3.5.1.5] D PAM18_5290 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] C 00240 Pyrimidine metabolism [PATH:paf00240] D PAM18_4864 carB; carbamoyl phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D PAM18_4866 carA; carbamoyl phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D PAM18_0402 pyrB; aspartate carbamoyltransferase catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D PAM18_0401 pyrC; dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3] D PAM18_1459 pyrC; dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3] D PAM18_5663 pyrQ; dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3] D PAM18_1910 pyrD; dihydroorotate dehydrogenase 2 K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2] D PAM18_5451 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D PAM18_2087 pyrF; orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D PAM18_1292 pyrH; uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D PAM18_1131 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D PAM18_4104 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D PAM18_4569 Maf-like protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D PAM18_0561 putative metal-dependent hydrolase K07043 upp; UTP pyrophosphatase [EC:3.6.1.-] D PAM18_1309 pyrG; CTP synthetase K01937 pyrG; CTP synthase [EC:6.3.4.2] D PAM18_1809 cmk; cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D PAM18_1321 surE; stationary phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D PAM18_3474 hypothetical protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2] D PAM18_4743 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D PAM18_0403 pyrR; bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D PAM18_0824 putative decarboxylase family protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-] D PAM18_0437 codA; cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D PAM18_3120 anaerobic ribonucleoside triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D PAM18_1485 dcd; deoxycytidine triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13] D PAM18_3877 nrdA; ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D PAM18_5618 nrdJa; NrdJa K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D PAM18_3878 nrdB; ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D PAM18_1999 tmk; thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D PAM18_5441 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D PAM18_0340 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] D PAM18_0440 putative oxidoreductase K17722 preT; dihydropyrimidine dehydrogenase (NAD+) subunit PreT [EC:1.3.1.1] D PAM18_0439 dihydropyrimidine dehydrogenase K17723 preA; dihydropyrimidine dehydrogenase (NAD+) subunit PreA [EC:1.3.1.1] D PAM18_0441 dht; phenylhydantoinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D PAM18_0443 allantoate amidohydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:paf00250] D PAM18_4169 phhC; aromatic amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D PAM18_4277 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D PAM18_2787 ansA; L-asparaginase I K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D PAM18_3565 ansB; glutaminase-asparaginase K05597 aspQ; glutamin-(asparagin-)ase [EC:3.5.1.38] D PAM18_1506 putative glutamine amidotransferase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D PAM18_0053 phzH; putative phenazine-modifying enzyme K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D PAM18_2959 putative asparagine synthetase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D PAM18_5109 asparagine synthetase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D PAM18_1141 putative amidohydrolase K13566 NIT2; omega-amidase [EC:3.5.1.3] D PAM18_2135 aminotransferase AlaT K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D PAM18_5549 aspA; aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1] D PAM18_1461 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D PAM18_5383 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D PAM18_5049 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D PAM18_2346 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D PAM18_1469 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D PAM18_1470 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D PAM18_0402 pyrB; aspartate carbamoyltransferase catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D PAM18_0261 gabT; 4-aminobutyrate aminotransferase K14268 davT; 5-aminovalerate/4-aminobutyrate aminotransferase [EC:2.6.1.48 2.6.1.19] D PAM18_0260 gabD; succinate-semialdehyde dehydrogenase I K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D PAM18_5151 gltB; glutamate synthase subunit alpha K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D PAM18_5150 gltD; glutamate synthase subunit beta K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D PAM18_1895 gdhB; NAD-dependent glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D PAM18_4681 gdhA; glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D PAM18_4256 putA; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D PAM18_0291 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAM18_0293 spuB; putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAM18_1609 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAM18_3004 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAM18_3482 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAM18_5233 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAM18_5629 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAM18_5644 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAM18_4864 carB; carbamoyl phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D PAM18_4866 carA; carbamoyl phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D PAM18_3409 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D PAM18_1186 putative aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D PAM18_5677 glmS; glucosamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D PAM18_1855 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:paf00260] D PAM18_4135 lysC; aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D PAM18_1846 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D PAM18_1209 hom; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D PAM18_5616 thrB; homoserine kinase K02204 thrB2; homoserine kinase type II [EC:2.7.1.39] D PAM18_3289 thrH; phosphoserine phosphatase K02203 thrH; phosphoserine / homoserine phosphotransferase [EC:3.1.3.3 2.7.1.39] D PAM18_1210 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D PAM18_4137 putative threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48] D PAM18_5533 ltaA; low specificity l-threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48] D PAM18_4696 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D PAM18_2589 glyA2; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D PAM18_5535 glyA1; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D PAM18_4721 hprA; glycerate dehydrogenase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29] D PAM18_1044 putative 2-hydroxyacid dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215] D PAM18_3993 Putative glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D PAM18_3632 putative hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D PAM18_5245 pgm; phosphoglyceromutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D PAM18_0312 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D PAM18_1805 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D PAM18_5071 putative phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D PAM18_0421 putative monoamine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4] D PAM18_2588 gcvP2; glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D PAM18_5331 gcvP1; glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D PAM18_2591 gcvT2; glycine cleavage system protein T2 K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D PAM18_5333 gcvT; glycine cleavage system aminomethyltransferase T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D PAM18_3460 lpdG; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PAM18_2790 lpdV; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PAM18_4940 lpd3; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PAM18_2587 gcvH2; glycine cleavage system protein H K02437 gcvH; glycine cleavage system H protein D PAM18_5332 gcvH1; glycine cleavage system protein H K02437 gcvH; glycine cleavage system H protein D PAM18_4905 putative glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D PAM18_4800 pssA; phosphatidylserine synthase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D PAM18_5492 betA; choline dehydrogenase K00108 betA; choline dehydrogenase [EC:1.1.99.1] D PAM18_5493 betB; betaine aldehyde dehydrogenase K00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8] D PAM18_5530 putative ring hydroxylating dioxygenase, alpha-subunit K00479 gbcA; glycine betaine monooxygenase A [EC:1.14.13.251] D PAM18_5531 putative ferredoxin K21832 gbcB; glycine betaine monooxygenase B [EC:1.14.13.251] D PAM18_5518 putative FMN oxidoreductase K21833 dgcA; N,N-dimethylglycine/sarcosine dehydrogenase [EC:1.5.7.3] D PAM18_5519 putative ferredoxin K21834 dgcB; N,N-dimethylglycine/sarcosine dehydrogenase ferredoxin subunit D PAM18_5520 putative electron transfer flavoprotein alpha subunit K25960 etfA; N,N-dimethylglycine/sarcosine catabolism electron transfer flavoprotein subunit alpha D PAM18_5521 putative electron transfer flavoprotein, beta subunit K25961 etfB; N,N-dimethylglycine/sarcosine catabolism electron transfer flavoprotein subunit beta D PAM18_5538 soxA; sarcosine oxidase alpha subunit K00302 soxA; sarcosine oxidase, subunit alpha [EC:1.5.3.24 1.5.3.1] D PAM18_5536 soxB; sarcosine oxidase beta subunit K00303 soxB; sarcosine oxidase, subunit beta [EC:1.5.3.24 1.5.3.1] D PAM18_5539 soxG; sarcosine oxidase gamma subunit K00305 soxG; sarcosine oxidase, subunit gamma [EC:1.5.3.24 1.5.3.1] D PAM18_5537 soxD; sarcosine oxidase delta subunit K00304 soxD; sarcosine oxidase, subunit delta [EC:1.5.3.24 1.5.3.1] D PAM18_0399 cystathionine beta-synthase K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22] D PAM18_0400 putative cystathionine gamma-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1] D PAM18_2590 sdaA; L-serine dehydratase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D PAM18_5499 sdaB; L-serine dehydratase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D PAM18_4189 hypothetical protein K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D PAM18_3576 ilvA2; threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D PAM18_0328 ilvA1; threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D PAM18_1608 dsdA; D-serine dehydratase K01753 dsdA; D-serine dehydratase [EC:4.3.1.18] D PAM18_0036 trpA; tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D PAM18_0037 trpB; tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D PAM18_2629 pvdH; diaminobutyrate--2-oxoglutarate aminotransferase K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76] C 00270 Cysteine and methionine metabolism [PATH:paf00270] D PAM18_2938 acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D PAM18_1122 cysE; O-acetylserine synthase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D PAM18_2939 cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47] D PAM18_3983 putative cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47] D PAM18_2263 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D PAM18_0400 putative cystathionine gamma-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1] D PAM18_0399 cystathionine beta-synthase K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22] D PAM18_3199 metH; B12-dependent methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D PAM18_3112 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D PAM18_0547 metK; S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D PAM18_0635 speD; S-adenosylmethionine decarboxylase K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D PAM18_4881 putative S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D PAM18_3359 speE; spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D PAM18_4882 putative spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D PAM18_3699 lasI; autoinducer synthesis protein LasI K13060 lasI; acyl homoserine lactone synthase [EC:2.3.1.184] D PAM18_1489 rhlI; autoinducer synthesis protein RhlI K13061 rhlI; acyl homoserine lactone synthase [EC:2.3.1.184] D PAM18_3662 hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D PAM18_4635 hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D PAM18_1802 N-ethylammeline chlorohydrolase K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28] D PAM18_1956 5'-methylthioadenosine phosphorylase K19696 mtiP; 5'-methylthioinosine phosphorylase [EC:2.4.2.44] D PAM18_1803 mtnA; methylthioribose-1-phosphate isomerase K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23] D PAM18_3364 methylthioribulose-1-phosphate dehydratase K08964 mtnB; methylthioribulose-1-phosphate dehydratase [EC:4.2.1.109] D PAM18_3362 masA; enolase-phosphatase E-1 K09880 mtnC; enolase-phosphatase E1 [EC:3.1.3.77] D PAM18_3363 putative oxidase K08967 mtnD; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [EC:1.13.11.53 1.13.11.54] D PAM18_1824 aromatic amino acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D PAM18_2141 putative GAF domain-containing protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14] D PAM18_0432 sahH; S-adenosyl-L-homocysteine hydrolase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D PAM18_1873 putative 1-aminocyclopropane-1-carboxylate deaminase K01505 E3.5.99.7; 1-aminocyclopropane-1-carboxylate deaminase [EC:3.5.99.7] D PAM18_4135 lysC; aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D PAM18_1846 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D PAM18_1209 hom; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D PAM18_0389 metX; homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D PAM18_5140 metY; O-acetylhomoserine aminocarboxypropyltransferase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49] D PAM18_1856 metZ; O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-] D PAM18_5127 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D PAM18_5321 gshA; glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D PAM18_0407 gshB; glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3] D PAM18_4169 phhC; aromatic amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D PAM18_3737 putative 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D PAM18_5067 rhdA; thiosulfate:cyanide sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D PAM18_2590 sdaA; L-serine dehydratase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D PAM18_5499 sdaB; L-serine dehydratase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D PAM18_4107 cysM; cysteine synthase B K12339 cysM; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144] D PAM18_0312 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D PAM18_1805 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00280 Valine, leucine and isoleucine degradation [PATH:paf00280] D PAM18_5127 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D PAM18_1547 ldh; leucine dehydrogenase K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9] D PAM18_2793 bkdA1; 2-oxoisovalerate dehydrogenase (alpha subunit) K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D PAM18_1548 putative pyruvate dehydrogenase E1 component, alpha subunit K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D PAM18_2792 bkdA2; 2-oxoisovalerate dehydrogenase (beta subunit) K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D PAM18_1549 putative pyruvate dehydrogenase E1 component, beta chain K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D PAM18_2791 bkdB; branched-chain alpha-keto acid dehydrogenase subunit E2 K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D PAM18_1550 branched-chain alpha-keto acid dehydrogenase subunit E2 K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D PAM18_3460 lpdG; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PAM18_2790 lpdV; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PAM18_4940 lpd3; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PAM18_2486 putative acyl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D PAM18_2488 putative acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D PAM18_4160 putative acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D PAM18_3513 putative acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D PAM18_5107 putative acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D PAM18_5091 putative acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D PAM18_3030 liuA; putative isovaleryl-CoA dehydrogenase K00253 IVD; isovaleryl-CoA dehydrogenase [EC:1.3.8.4] D PAM18_3418 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D PAM18_1394 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D PAM18_1946 fadB; multifunctional fatty acid oxidation complex subunit alpha K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D PAM18_3309 putative 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D PAM18_1947 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D PAM18_1511 putative acyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D PAM18_2022 putative acyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D PAM18_1416 mmsB; 3-hydroxyisobutyrate dehydrogenase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] D PAM18_4292 putative aldehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D PAM18_0132 putative aldehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D PAM18_1415 mmsA; methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D PAM18_5010 putative aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PAM18_0134 beta alanine--pyruvate transaminase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D PAM18_5433 omega amino acid--pyruvate transaminase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D PAM18_3033 liuD; methylcrotonyl-CoA carboxylase, alpha-subunit (biotin-containing) K01968 MCCC1; 3-methylcrotonyl-CoA carboxylase alpha subunit [EC:6.4.1.4] D PAM18_3031 liuB; methylcrotonyl-CoA carboxylase, beta-subunit K01969 MCCC2; 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4] D PAM18_3032 liuC; gamma-carboxygeranoyl-CoA hydratase K13766 liuC; methylglutaconyl-CoA hydratase [EC:4.2.1.18] D PAM18_3034 liuE; hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D PAM18_3046 putative CoA transferase, subunit A K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] D PAM18_3045 putative CoA transferase, subunit B K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] D PAM18_3048 acetoacetyl-CoA synthetase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16] D PAM18_3044 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_3310 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_1015 putative acyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_2485 putative acyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_4894 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:paf00290] D PAM18_4189 hypothetical protein K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D PAM18_3576 ilvA2; threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D PAM18_0328 ilvA1; threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D PAM18_1842 leuC; isopropylmalate isomerase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D PAM18_1843 leuD; isopropylmalate isomerase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D PAM18_1845 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D PAM18_3009 thiamine pyrophosphate protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D PAM18_0757 acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D PAM18_3714 hypothetical protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D PAM18_4803 ilvI; acetolactate synthase 3 catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D PAM18_4802 ilvH; acetolactate synthase 3 regulatory subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D PAM18_4801 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D PAM18_0351 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D PAM18_5127 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D PAM18_1547 ldh; leucine dehydrogenase K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9] D PAM18_2135 aminotransferase AlaT K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D PAM18_1146 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D PAM18_3816 putative 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00300 Lysine biosynthesis [PATH:paf00300] D PAM18_1209 hom; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D PAM18_4135 lysC; aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D PAM18_1846 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D PAM18_3154 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D PAM18_4038 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D PAM18_0749 putative dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D PAM18_0219 putative dihydrodipicolinate synthetase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D PAM18_4867 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D PAM18_1280 dapD; tetrahydrodipicolinate succinylase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117] D PAM18_0530 putative class III pyridoxal phosphate-dependent aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D PAM18_1287 succinyldiaminopimelate transaminase K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17] D PAM18_3871 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D PAM18_5399 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D PAM18_5398 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D PAM18_3392 putative aminotransferase K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-] D PAM18_4508 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D PAM18_4507 murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation [PATH:paf00310] D PAM18_4018 putative aldehyde dehydrogenase K26061 amaB; L-aminoadipate-semialdehyde dehydrogenase D PAM18_3461 sucB; dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D PAM18_3460 lpdG; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PAM18_2790 lpdV; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PAM18_4940 lpd3; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PAM18_0445 gcdH; glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D PAM18_3418 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D PAM18_1394 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D PAM18_1946 fadB; multifunctional fatty acid oxidation complex subunit alpha K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D PAM18_3309 putative 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D PAM18_3044 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_3310 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_1015 putative acyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_2485 putative acyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_4894 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_0261 gabT; 4-aminobutyrate aminotransferase K14268 davT; 5-aminovalerate/4-aminobutyrate aminotransferase [EC:2.6.1.48 2.6.1.19] D PAM18_0260 gabD; succinate-semialdehyde dehydrogenase I K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D PAM18_0444 putative acyl-CoA transferase K01041 gcdG; glutaryl-CoA transferase [EC:2.8.3.-] D PAM18_3779 putative L-malate dehydrogenase K13609 dpkA; delta1-piperideine-2-carboxylate reductase [EC:1.5.1.21] D PAM18_4017 putative oxidoreductase K26065 amaA; L-pipecolate oxidase D PAM18_5010 putative aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00220 Arginine biosynthesis [PATH:paf00220] D PAM18_1449 argF; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D PAM18_5289 arcB; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D PAM18_1461 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D PAM18_5383 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D PAM18_0494 putative hydrolase K01941 uca; urea carboxylase [EC:6.3.4.6] D PAM18_4980 ureC; urease subunit alpha K01428 ureC; urease subunit alpha [EC:3.5.1.5] D PAM18_4979 ureB; urease subunit beta K01429 ureB; urease subunit beta [EC:3.5.1.5] D PAM18_4977 ureA; urease subunit gamma K01430 ureA; urease subunit gamma [EC:3.5.1.5] D PAM18_5288 arcA; arginine deiminase K01478 arcA; arginine deiminase [EC:3.5.3.6] D PAM18_3409 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D PAM18_3565 ansB; glutaminase-asparaginase K05597 aspQ; glutamin-(asparagin-)ase [EC:3.5.1.38] D PAM18_0291 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAM18_0293 spuB; putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAM18_1609 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAM18_3004 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAM18_3482 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAM18_5233 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAM18_5629 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAM18_5644 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAM18_4864 carB; carbamoyl phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D PAM18_4866 carA; carbamoyl phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D PAM18_5290 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] D PAM18_1895 gdhB; NAD-dependent glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D PAM18_4681 gdhA; glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D PAM18_4169 phhC; aromatic amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D PAM18_2135 aminotransferase AlaT K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D PAM18_5322 argA; N-acetylglutamate synthase K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1] D PAM18_4493 argJ; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] D PAM18_4626 putative acetyltransferase K22477 argO; N-acetylglutamate synthase [EC:2.3.1.1] D PAM18_5443 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8] D PAM18_0643 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] D PAM18_0530 putative class III pyridoxal phosphate-dependent aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D PAM18_5509 acetylornithine deacetylase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16] D PAM18_5324 argE; acetylornithine deacetylase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16] C 00330 Arginine and proline metabolism [PATH:paf00330] D PAM18_0437 codA; cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D PAM18_3226 putative Orn/Arg/Lys decarboxylase K01584 adiA; arginine decarboxylase [EC:4.1.1.19] D PAM18_4950 speA; arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19] D PAM18_0287 aguA; agmatine deiminase K10536 aguA; agmatine deiminase [EC:3.5.3.12] D PAM18_0288 aguB; N-carbamoylputrescine amidohydrolase K12251 aguB; N-carbamoylputrescine amidase [EC:3.5.1.53] D PAM18_4610 speC; ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D PAM18_3359 speE; spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D PAM18_4882 putative spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D PAM18_0635 speD; S-adenosylmethionine decarboxylase K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D PAM18_4881 putative S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D PAM18_0294 spuC; putative aminotransferase K12256 spuC; putrescine---pyruvate transaminase [EC:2.6.1.113] D PAM18_0217 putative aminotransferase K12256 spuC; putrescine---pyruvate transaminase [EC:2.6.1.113] D PAM18_1233 spdH; spermidine dehydrogenase, SpdH K00316 spdH; spermidine dehydrogenase [EC:1.5.99.6] D PAM18_5010 putative aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PAM18_5432 putative aldehyde dehydrogenase K12254 kauB; 4-guanidinobutyraldehyde dehydrogenase / NAD-dependent aldehyde dehydrogenase [EC:1.2.1.54 1.2.1.-] D PAM18_0825 spermidine acetyltransferase K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57] D PAM18_0421 putative monoamine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4] D PAM18_5087 aruH; Arginine:Pyruvate Transaminase, AruH K12252 aruH; arginine:pyruvate transaminase [EC:2.6.1.84] D PAM18_3710 gbuA; guanidinobutyrase K12255 gbuA; guanidinobutyrase [EC:3.5.3.7] D PAM18_1599 amiE; acylamide amidohydrolase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D PAM18_4432 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D PAM18_4333 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D PAM18_0774 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D PAM18_4142 aruG; arginine/ornithine succinyltransferase AII subunit K00673 astA; arginine N-succinyltransferase [EC:2.3.1.109] D PAM18_4143 aruF; arginine/ornithine succinyltransferase AI subunit K00673 astA; arginine N-succinyltransferase [EC:2.3.1.109] D PAM18_4140 aruB; succinylarginine dihydrolase K01484 astB; succinylarginine dihydrolase [EC:3.5.3.23] D PAM18_4144 aruC; bifunctional succinylornithine transaminase/acetylornithine aminotransferase K00840 astC; succinylornithine aminotransferase [EC:2.6.1.81] D PAM18_4141 astD; succinylglutamic semialdehyde dehydrogenase K06447 astD; succinylglutamic semialdehyde dehydrogenase [EC:1.2.1.71] D PAM18_4138 aruE; succinylglutamate desuccinylase K05526 astE; succinylglutamate desuccinylase [EC:3.5.1.96] D PAM18_2723 putative oxidoreductase K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-] D PAM18_2187 putative oxidoreductase K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-] D PAM18_5429 putative oxidoreductase K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-] D PAM18_3483 putative oxidoreductase K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-] D PAM18_0215 putative aldehyde dehydrogenase K09472 puuC; 4-(gamma-glutamylamino)butanal dehydrogenase [EC:1.2.1.99] D PAM18_0748 putative aldehyde dehydrogenase K09472 puuC; 4-(gamma-glutamylamino)butanal dehydrogenase [EC:1.2.1.99] D PAM18_0393 proC; pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D PAM18_4256 putA; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D PAM18_4658 proB; gamma-glutamyl kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D PAM18_0933 proA; gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D PAM18_5195 prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D PAM18_4169 phhC; aromatic amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D PAM18_3776 putative proline racemase protein K22548 lhpL; trans-L-3-hydroxyproline dehydratase [EC:4.2.1.77] D PAM18_3772 hypothetical protein K09123 lhpI; cis-L-3-hydroxyproline dehydratase [EC:4.2.1.171] C 00340 Histidine metabolism [PATH:paf00340] D PAM18_4540 hisG; ATP phosphoribosyltransferase catalytic subunit K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17] D PAM18_5050 hisZ; ATP phosphoribosyltransferase regulatory subunit K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit D PAM18_5182 hisE; phosphoribosyl-ATP pyrophosphatase K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31] D PAM18_5181 hisI; phosphoribosyl-AMP cyclohydrolase K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19] D PAM18_5255 hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] D PAM18_5257 hisH; imidazole glycerol phosphate synthase subunit HisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D PAM18_5254 hisF1; imidazole glycerol phosphate synthase subunit HisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D PAM18_5258 hisB; imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] D PAM18_1807 hisC2; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D PAM18_4538 hisC1; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D PAM18_2507 putative aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D PAM18_4539 hisD; histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] D PAM18_5207 putative histidine/phenylalanine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D PAM18_5212 hutH; histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D PAM18_5214 hutU; urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49] D PAM18_5206 hutI; imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7] D PAM18_1797 formimidoylglutamase K01479 hutG; formiminoglutamase [EC:3.5.3.8] D PAM18_5220 N-formimino-L-glutamate deiminase K05603 hutF; formimidoylglutamate deiminase [EC:3.5.3.13] D PAM18_5205 hutG; N-formylglutamate amidohydrolase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68] D PAM18_5010 putative aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PAM18_0421 putative monoamine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4] C 00350 Tyrosine metabolism [PATH:paf00350] D PAM18_4169 phhC; aromatic amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D PAM18_1807 hisC2; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D PAM18_4538 hisC1; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D PAM18_2507 putative aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D PAM18_1824 aromatic amino acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D PAM18_4174 hpd; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D PAM18_3036 hmgA; homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5] D PAM18_3038 maiA; maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2] D PAM18_2566 putative glutathione S-transferase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2] D PAM18_3037 fahA; fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2] D PAM18_0421 putative monoamine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4] D PAM18_0867 putative aldehyde dehydrogenase K00146 feaB; phenylacetaldehyde dehydrogenase [EC:1.2.1.39] D PAM18_1317 adhC; alcohol dehydrogenase class III K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D PAM18_5547 adhA; alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D PAM18_0849 hpaA; 4-hydroxyphenylacetate 3-monooxygenase large chain K00483 hpaB; 4-hydroxyphenylacetate 3-monooxygenase [EC:1.14.14.9] D PAM18_0848 hpaC; 4-hydroxyphenylacetate 3-monooxygenase small chain K00484 hpaC; flavin reductase (NADH) [EC:1.5.1.36] D PAM18_0815 hpcB; homoprotocatechuate 2,3-dioxygenase K00455 hpaD; 3,4-dihydroxyphenylacetate 2,3-dioxygenase [EC:1.13.11.15] D PAM18_0816 hpcC; 5-carboxy-2-hydroxymuconate semialdehyde dehydrogenase K00151 hpaE; 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase [EC:1.2.1.60] D PAM18_3079 putative 5-carboxymethyl-2-hydroxymuconate isomerase K01826 hpaF; 5-carboxymethyl-2-hydroxymuconate isomerase [EC:5.3.3.10] D PAM18_0814 hpcD; 5-carboxymethyl-2-hydroxymuconate isomerase K01826 hpaF; 5-carboxymethyl-2-hydroxymuconate isomerase [EC:5.3.3.10] D PAM18_0817 putative 4-hydroxyphenylacetate degradation bifunctional isomerase K05921 hpaG; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase [EC:4.1.1.68 5.3.3.-] D PAM18_0818 putative 4-hydroxyphenylacetate degradation bifunctional isomerase K05921 hpaG; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase [EC:4.1.1.68 5.3.3.-] D PAM18_0812 hpcG; 2-oxo-hept-3-ene-1,7-dioate hydratase K02509 hpaH; 2-oxo-hept-3-ene-1,7-dioate hydratase [EC:4.2.1.-] D PAM18_0811 putative 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase K02510 hpaI; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52] D PAM18_0260 gabD; succinate-semialdehyde dehydrogenase I K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D PAM18_2569 gtdA; gentisate 1,2-dioxygenase K00450 E1.13.11.4; gentisate 1,2-dioxygenase [EC:1.13.11.4] D PAM18_2568 hypothetical protein K16165 nagK; fumarylpyruvate hydrolase [EC:3.7.1.20] C 00360 Phenylalanine metabolism [PATH:paf00360] D PAM18_4167 phhA; phenylalanine 4-monooxygenase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] D PAM18_0421 putative monoamine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4] D PAM18_0867 putative aldehyde dehydrogenase K00146 feaB; phenylacetaldehyde dehydrogenase [EC:1.2.1.39] D PAM18_5092 putative enoyl-CoA hydratase/isomerase K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18] D PAM18_3418 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D PAM18_1394 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D PAM18_1395 3-hydroxy-acyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D PAM18_3419 3-hydroxy-acyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D PAM18_4169 phhC; aromatic amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D PAM18_1807 hisC2; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D PAM18_4538 hisC1; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D PAM18_2507 putative aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D PAM18_1824 aromatic amino acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D PAM18_3528 putative acetyltransferase K03825 aaaT; L-phenylalanine/L-methionine N-acetyltransferase [EC:2.3.1.53 2.3.1.-] D PAM18_4174 hpd; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D PAM18_5199 putative oxidoreductase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D PAM18_5424 dadA; D-amino acid dehydrogenase small subunit K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D PAM18_1599 amiE; acylamide amidohydrolase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D PAM18_4432 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D PAM18_4333 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D PAM18_0774 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D PAM18_3945 Isopropylmalate/homocitrate/citramalate synthase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] C 00380 Tryptophan metabolism [PATH:paf00380] D PAM18_2414 putative tryptophan oxygenase K00453 TDO2; tryptophan 2,3-dioxygenase [EC:1.13.11.11] D PAM18_2962 kynB; kynurenine formamidase, KynB K07130 kynB; arylformamidase [EC:3.5.1.9] D PAM18_2963 putative kynureninase K01556 KYNU; kynureninase [EC:3.7.1.3] D PAM18_3461 sucB; dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D PAM18_3460 lpdG; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PAM18_2790 lpdV; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PAM18_4940 lpd3; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PAM18_0445 gcdH; glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D PAM18_3418 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D PAM18_1394 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D PAM18_1946 fadB; multifunctional fatty acid oxidation complex subunit alpha K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D PAM18_3309 putative 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D PAM18_3044 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_3310 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_1015 putative acyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_2485 putative acyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_4894 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_0421 putative monoamine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4] D PAM18_5010 putative aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PAM18_1599 amiE; acylamide amidohydrolase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D PAM18_4432 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D PAM18_4333 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D PAM18_0774 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D PAM18_4707 katB; catalase K03781 katE; catalase [EC:1.11.1.6] D PAM18_2892 katE; hydroperoxidase II K03781 katE; catalase [EC:1.11.1.6] D PAM18_0694 katA; catalase K03781 katE; catalase [EC:1.11.1.6] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:paf00400] D PAM18_3141 phzC2; phenazine biosynthesis protein PhzC K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D PAM18_2120 putative aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D PAM18_3296 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D PAM18_2019 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D PAM18_0725 phzC1; phenazine biosynthesis protein PhzC K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D PAM18_5153 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] D PAM18_0241 aroQ2; 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10] D PAM18_4957 aroQ1; 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10] D PAM18_0238 putative 4-hydroxyphenylpyruvate dioxygenase K26400 quiC1; 3-dehydroshikimate dehydratase [EC:4.2.1.118] D PAM18_0240 shikimate 5-dehydrogenase K25901 qsuD; quinate/shikimate dehydrogenase (NAD+) [EC:1.1.1.24] D PAM18_0025 aroE; shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D PAM18_5154 aroK; shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71] D PAM18_3366 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D PAM18_4047 phnA; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D PAM18_0610 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D PAM18_0630 trpG; anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D PAM18_4046 phnB; anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D PAM18_0631 trpD; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] D PAM18_1850 trpF; N-(5'-phosphoribosyl)anthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24] D PAM18_0632 trpC; indole-3-glycerol-phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48] D PAM18_0036 trpA; tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D PAM18_0037 trpB; tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D PAM18_5303 chorismate mutase K04093 pheA1; chorismate mutase [EC:5.4.99.5] D PAM18_1806 pheA; chorismate mutase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51] D PAM18_1490 pheC; cyclohexadienyl dehydratase precursor K01713 pheC; cyclohexadienyl dehydratase [EC:4.2.1.51 4.2.1.91] D PAM18_4169 phhC; aromatic amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D PAM18_1807 hisC2; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D PAM18_4538 hisC1; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D PAM18_2507 putative aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D PAM18_1824 aromatic amino acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D PAM18_4167 phhA; phenylalanine 4-monooxygenase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism [PATH:paf00410] D PAM18_4839 panD; aspartate alpha-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] D PAM18_1233 spdH; spermidine dehydrogenase, SpdH K00316 spdH; spermidine dehydrogenase [EC:1.5.99.6] D PAM18_5010 putative aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PAM18_4838 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D PAM18_0440 putative oxidoreductase K17722 preT; dihydropyrimidine dehydrogenase (NAD+) subunit PreT [EC:1.3.1.1] D PAM18_0439 dihydropyrimidine dehydrogenase K17723 preA; dihydropyrimidine dehydrogenase (NAD+) subunit PreA [EC:1.3.1.1] D PAM18_0441 dht; phenylhydantoinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D PAM18_0443 allantoate amidohydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D PAM18_0134 beta alanine--pyruvate transaminase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D PAM18_5433 omega amino acid--pyruvate transaminase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D PAM18_3418 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D PAM18_1394 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D PAM18_1946 fadB; multifunctional fatty acid oxidation complex subunit alpha K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D PAM18_3309 putative 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D PAM18_2486 putative acyl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D PAM18_4292 putative aldehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D PAM18_0132 putative aldehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D PAM18_1415 mmsA; methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] C 00430 Taurine and hypotaurine metabolism [PATH:paf00430] D PAM18_0164 putative gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D PAM18_0359 putative gamma-glutamyltranspeptidase precursor K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D PAM18_3564 ggt; gamma-glutamyltranspeptidase precursor K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D PAM18_1005 tauD; taurine dioxygenase K03119 tauD; taurine dioxygenase [EC:1.14.11.17] D PAM18_1895 gdhB; NAD-dependent glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D PAM18_4206 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D PAM18_4205 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00440 Phosphonate and phosphinate metabolism [PATH:paf00440] D PAM18_3592 phnX; phosphonoacetaldehyde hydrolase K05306 phnX; phosphonoacetaldehyde hydrolase [EC:3.11.1.1] D PAM18_3593 phnW; 2-aminoethylphosphonate--pyruvate transaminase K03430 phnW; 2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37] D PAM18_1589 phnI; putative phosphonate metabolism protein K06164 phnI; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI [EC:2.7.8.37] D PAM18_1587 phnG; putative phosphonate metabolism protein PhnG K06166 phnG; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG [EC:2.7.8.37] D PAM18_1588 phnH; carbon-phosphorus lyase complex subunit K06165 phnH; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH [EC:2.7.8.37] D PAM18_1592 putative ATP-binding component of ABC transporter K05780 phnL; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [EC:2.7.8.37] D PAM18_1593 phnM; phosphonate metabolism protein K06162 phnM; alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase [EC:3.6.1.63] D PAM18_1590 phnJ; putative phosphonate metabolism protein K06163 phnJ; alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase [EC:4.7.1.1] D PAM18_1595 phnP; carbon-phosphorus lyase complex accessory protein K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55] C 00450 Selenocompound metabolism [PATH:paf00450] D PAM18_3199 metH; B12-dependent methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D PAM18_3112 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D PAM18_0400 putative cystathionine gamma-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1] D PAM18_2359 trxB1; thioredoxin reductase 1 K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D PAM18_4533 cysN; bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D PAM18_4534 cysD; sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D PAM18_3405 selD; selenophosphate synthetase K01008 selD; selenide, water dikinase [EC:2.7.9.3] D PAM18_4917 selA; selenocysteine synthase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] D PAM18_1483 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:paf00460] D PAM18_3320 bglX; periplasmic beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21] D PAM18_0164 putative gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D PAM18_0359 putative gamma-glutamyltranspeptidase precursor K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D PAM18_3564 ggt; gamma-glutamyltranspeptidase precursor K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D PAM18_2787 ansA; L-asparaginase I K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D PAM18_4696 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D PAM18_2589 glyA2; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D PAM18_5535 glyA1; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D PAM18_2842 hcnA; hydrogen cyanide synthase HcnA K10814 hcnA; hydrogen cyanide synthase HcnA [EC:1.4.99.5] D PAM18_2841 hcnB; hydrogen cyanide synthase HcnB K10815 hcnB; hydrogen cyanide synthase HcnB [EC:1.4.99.5] D PAM18_2840 hcnC; hydrogen cyanide synthase HcnC K10816 hcnC; hydrogen cyanide synthase HcnC [EC:1.4.99.5] C 00470 D-Amino acid metabolism [PATH:paf00470] D PAM18_5041 alr; biosynthetic alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D PAM18_5422 dadX; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D PAM18_4501 ddl; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D PAM18_0736 ddlA; D-alanine-D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D PAM18_3409 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D PAM18_3565 ansB; glutaminase-asparaginase K05597 aspQ; glutamin-(asparagin-)ase [EC:3.5.1.38] D PAM18_4759 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D PAM18_4505 murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D PAM18_1608 dsdA; D-serine dehydratase K01753 dsdA; D-serine dehydratase [EC:4.3.1.18] D PAM18_5399 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D PAM18_5398 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D PAM18_1075 putative amino acid oxidase K19746 dauA; D-arginine dehydrogenase [EC:1.4.99.6] D PAM18_1076 putative ornithine cyclodeaminase K19744 dauB; L-arginine dehydrogenase [EC:1.4.1.25] D PAM18_3761 putative proline racemase K12658 lhpA; 4-hydroxyproline epimerase [EC:5.1.1.8] D PAM18_3764 putative oxidoreductase K22549 lhpC; D-hydroxyproline dehydrogenase subunit alpha [EC:1.5.99.-] D PAM18_3762 putative D-amino acid oxidase K21061 lhpB; D-hydroxyproline dehydrogenase subunit beta [EC:1.5.99.-] D PAM18_3763 hypothetical protein K22550 lhpD; D-hydroxyproline dehydrogenase subunit gamma D PAM18_3777 putative dihydrodipicolinate synthetase K21062 lhpC; 1-pyrroline-4-hydroxy-2-carboxylate deaminase [EC:3.5.4.22] D PAM18_2818 putative aldehyde dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26] D PAM18_3778 putative semialdehyde dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26] D PAM18_4947 hypothetical protein K23120 cntL; histidine 2-aminobutanoyltransferase [EC:2.5.1.152 2.5.1.-] D PAM18_4946 hypothetical protein K23122 cntM; staphylopine/pseudopaline/yersinopine synthase [EC:1.5.1.52 1.5.1.-] D PAM18_5199 putative oxidoreductase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D PAM18_5424 dadA; D-amino acid dehydrogenase small subunit K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] C 00480 Glutathione metabolism [PATH:paf00480] D PAM18_0164 putative gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D PAM18_0359 putative gamma-glutamyltranspeptidase precursor K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D PAM18_3564 ggt; gamma-glutamyltranspeptidase precursor K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D PAM18_2931 LamB/YcsF family protein K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9] D PAM18_4602 hypothetical protein K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9] D PAM18_0491 hypothetical protein K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9] D PAM18_4601 putative allophanate hydrolase subunit 1 K23123 pxpB; 5-oxoprolinase (ATP-hydrolysing) subunit B [EC:3.5.2.9] D PAM18_2932 putative allophanate hydrolase subunit 1 K23123 pxpB; 5-oxoprolinase (ATP-hydrolysing) subunit B [EC:3.5.2.9] D PAM18_2933 putative allophanate hydrolase subunit 2 K23124 pxpC; 5-oxoprolinase (ATP-hydrolysing) subunit C [EC:3.5.2.9] D PAM18_4600 putative allophanate hydrolase subunit 2 K23124 pxpC; 5-oxoprolinase (ATP-hydrolysing) subunit C [EC:3.5.2.9] D PAM18_2855 carboxylate-amine ligase K06048 gshA; glutamate---cysteine ligase / carboxylate-amine ligase [EC:6.3.2.2 6.3.-.-] D PAM18_5321 gshA; glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D PAM18_0407 gshB; glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3] D PAM18_1107 pepA; leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D PAM18_1880 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D PAM18_3152 putative glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D PAM18_3391 putative glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D PAM18_1925 putative glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D PAM18_3665 putative glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D PAM18_4492 putative glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D PAM18_2150 putative glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D PAM18_0472 putative glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D PAM18_2142 putative glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D PAM18_3019 gor; glutathione reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7] D PAM18_2351 idh; isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D PAM18_2352 icd; isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D PAM18_2777 putative 2-hydroxyacid dehydrogenase K00032 E1.1.1.43; phosphogluconate 2-dehydrogenase [EC:1.1.1.43] D PAM18_1789 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D PAM18_5560 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D PAM18_4202 putative glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9] D PAM18_3742 putative glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9] D PAM18_2137 putative glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9] D PAM18_4610 speC; ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D PAM18_3359 speE; spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D PAM18_4882 putative spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation C 00540 Lipopolysaccharide biosynthesis [PATH:paf00540] D PAM18_1302 lpxA; UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D PAM18_4497 lpxC; UDP-3-O-acyl N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D PAM18_1300 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D PAM18_3254 UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D PAM18_1303 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D PAM18_1980 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D PAM18_4548 putative sugar isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D PAM18_1310 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D PAM18_4549 putative phophatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D PAM18_3947 CMP-2-keto-3-deoxyoctulosonic acid synthetase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D PAM18_1982 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D PAM18_5101 waaA; 3-deoxy-D-manno-octulosonic-acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D PAM18_0011 lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D PAM18_1729 lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D PAM18_4103 lpxO2; lipopolysaccharide biosynthetic protein LpxO2 K12979 lpxO; beta-hydroxylase [EC:1.14.11.-] D PAM18_4603 lpxO1; lipopolysaccharide biosynthetic protein LpxO1 K12979 lpxO; beta-hydroxylase [EC:1.14.11.-] D PAM18_3073 hypothetical protein K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43] D PAM18_1655 hypothetical protein K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43] D PAM18_1430 arnT; 4-amino-4-deoxy-L-arabinose transferase K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43] D PAM18_4758 pagL; Lipid A 3-O-deacylase K12976 pagL; lipid A 3-O-deacylase [EC:3.1.1.-] D PAM18_4516 phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D PAM18_5110 rfaE; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70] D PAM18_0006 D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D PAM18_1628 rfaD; ADP-L-glycero-D-mannoheptose 6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20] D PAM18_5125 waaC; heptosyltransferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23] D PAM18_5126 waaF; heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24] D PAM18_5123 waaP; lipopolysaccharide kinase WaaP K02848 waaP; lipopolysaccharide core heptose(I) kinase [EC:2.7.1.235] D PAM18_4608 hypothetical protein K19353 eptC; heptose-I-phosphate ethanolaminephosphotransferase [EC:2.7.8.-] D PAM18_5124 waaG; UDP-glucose:(heptosyl) LPS alpha 1,3-glucosyltransferase WaaG K02844 waaG; UDP-glucose:(heptosyl)LPS alpha-1,3-glucosyltransferase [EC:2.4.1.-] C 00542 O-Antigen repeat unit biosynthesis C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:paf00541] D PAM18_3021 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D PAM18_0872 putative epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D PAM18_3022 putative nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D PAM18_1427 putative nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D PAM18_5280 rmlA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D PAM18_5278 rmlB; dTDP-D-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D PAM18_5281 rmlC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D PAM18_0871 putative dTDP-4-rhamnose reductase-related protein K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D PAM18_5279 rmlD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D PAM18_5355 CDP-6-deoxy-delta-3,4-glucoseen reductase K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1] D PAM18_1435 algA; phosphomannose isomerase/guanosine 5'-diphospho-D-mannose pyrophosphorylase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D PAM18_2808 pslB; putative phosphomannose isomerase/GDP-mannose pyrophosphorylase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D PAM18_5574 wbpW; phosphomannose isomerase/GDP-mannose WbpW K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D PAM18_5575 gmd; GDP-mannose 4,7-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D PAM18_5576 rmd; oxidoreductase Rmd K15856 rmd; GDP-4-dehydro-6-deoxy-D-mannose reductase [EC:1.1.1.281] D PAM18_5680 glmU; glucosamine-1-phosphate acetyltransferase/N-acetylglucosamine-1-phosphate uridyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D PAM18_1822 wbpM; nucleotide sugar epimerase/dehydratase WbpM K24300 wbpM; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135] D PAM18_1820 NAD dependent epimerase/dehydratase family-like protein K24310 wbpV; UDP-N-acetyl-alpha-D-quinovosamine dehydrogenase [EC:1.1.1.426] D PAM18_1813 UDP-glucose/GDP-mannose dehydrogenase-like protein K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-] D PAM18_1814 wbpP K02473 wbpP; UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine 4-epimerase [EC:5.1.3.7 5.1.3.-] D PAM18_1817 Asparagine synthase-like protein K24327 wbpS; glutamine-dependent amidotransferase [EC:6.3.5.-] C 00550 Peptidoglycan biosynthesis [PATH:paf00550] D PAM18_4541 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D PAM18_1984 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D PAM18_4502 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D PAM18_4505 murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D PAM18_4508 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D PAM18_4501 ddl; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D PAM18_0736 ddlA; D-alanine-D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D PAM18_4507 murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D PAM18_1294 uppS; undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D PAM18_3086 bacA; undecaprenyl pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D PAM18_4506 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D PAM18_4503 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D PAM18_0377 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D PAM18_5160 ponA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D PAM18_4807 mrcB; penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4] D PAM18_0937 pbpA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D PAM18_4509 ftsI; penicillin-binding protein 3 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D PAM18_2768 pbpC; penicillin-binding protein 3A K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D PAM18_0941 dacC; D-ala-D-ala-carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D PAM18_1913 putative D-alanyl-D-alanine carboxypeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] C 00552 Teichoic acid biosynthesis [PATH:paf00552] D PAM18_3086 bacA; undecaprenyl pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D PAM18_1822 wbpM; nucleotide sugar epimerase/dehydratase WbpM K24300 wbpM; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis [PATH:paf00543] D PAM18_1445 alg8; alginate biosynthesis protein Alg8 K19290 alg8; mannuronan synthase [EC:2.4.1.33] D PAM18_1444 alg44; alginate biosynthesis protein Alg44 K19291 alg44; mannuronan synthase [EC:2.4.1.33] D PAM18_1438 algI; alginate o-acetyltransferase AlgI K19294 algI; alginate O-acetyltransferase complex protein AlgI D PAM18_1437 algJ; alginate o-acetyltransferase AlgJ K19295 algJ; alginate O-acetyltransferase complex protein AlgJ D PAM18_1436 algF; alginate o-acetyltransferase AlgF K19296 algF; alginate O-acetyltransferase complex protein AlgF D PAM18_1440 algX; alginate biosynthesis protein AlgX K19293 algX; alginate biosynthesis protein AlgX D PAM18_2809 pslA; putative glycosyl transferase K20997 pslA; polysaccharide biosynthesis protein PslA D PAM18_2807 pslC; putative glycosyl transferase K25205 pslC; polysaccharide biosynthesis protein PslC D PAM18_2804 pslF; putative glycosyl transferase K20999 pslF; polysaccharide biosynthesis protein PslF D PAM18_2802 pslH; putative glycosyltransferase K21001 pslH; polysaccharide biosynthesis protein PslH D PAM18_2801 pslI; putative transferase K21002 pslI; polysaccharide biosynthesis protein PslI D PAM18_2938 acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D PAM18_1122 cysE; O-acetylserine synthase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:paf00730] D PAM18_5084 thiC; thiamine biosynthesis protein ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17] D PAM18_0964 thiD; phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] D PAM18_1124 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D PAM18_2982 putative pyridoxal-phosphate dependent enzyme K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D PAM18_5232 thiI; thiamine biosynthesis protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D PAM18_4641 putative D-amino acid oxidase K03153 thiO; glycine oxidase [EC:1.4.3.19] D PAM18_0896 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D PAM18_0380 thiG; thiazole synthase K03149 thiG; thiazole synthase [EC:2.8.1.10] D PAM18_0963 thiE; thiamine-phosphate pyrophosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D PAM18_0889 thiL; thiamine monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16] D PAM18_5063 ribosome-associated GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D PAM18_1672 phoA; alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D PAM18_1260 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:paf00740] D PAM18_0893 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D PAM18_0886 ribB; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D PAM18_0884 ribD; riboflavin-specific deaminase/reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D PAM18_5402 putative hydrolase K20862 yigB; FMN hydrolase / 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.102 3.1.3.104] D PAM18_0887 ribH; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D PAM18_0885 ribC; riboflavin synthase subunit alpha K00793 ribE; riboflavin synthase [EC:2.5.1.9] D PAM18_4654 ribF; bifunctional riboflavin kinase/FMN adenylyltransferase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] D PAM18_0190 putative acid phosphatase K09474 phoN; acid phosphatase (class A) [EC:3.1.3.2] D PAM18_0848 hpaC; 4-hydroxyphenylacetate 3-monooxygenase small chain K00484 hpaC; flavin reductase (NADH) [EC:1.5.1.36] D PAM18_2684 msuE; NADH-dependent FMN reductase MsuE K00299 ssuE; FMN reductase [EC:1.5.1.38] D PAM18_1519 NAD(P)H-dependent FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38] D PAM18_3755 putative nitroreductase K04719 bluB; 5,6-dimethylbenzimidazole synthase [EC:1.13.11.79] D PAM18_5082 aspP; adenosine diphosphate sugar pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D PAM18_0921 aromatic acid decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00750 Vitamin B6 metabolism [PATH:paf00750] D PAM18_3996 pdxH; pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5] D PAM18_5637 pdxY; pyridoxamine kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35] D PAM18_0552 epd; D-erythrose 4-phosphate dehydrogenase K03472 epd; D-erythrose 4-phosphate dehydrogenase [EC:1.2.1.72] D PAM18_3533 pdxB; erythronate-4-phosphate dehydrogenase K03473 pdxB; erythronate-4-phosphate dehydrogenase [EC:1.1.1.290] D PAM18_1805 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D PAM18_0594 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262] D PAM18_2823 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262] D PAM18_4265 pdxJ; pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2] D PAM18_1210 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] C 00760 Nicotinate and nicotinamide metabolism [PATH:paf00760] D PAM18_4277 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D PAM18_4044 nadA; quinolinate synthetase K03517 nadA; quinolinate synthase [EC:2.5.1.72] D PAM18_4615 nadC; nicotinate-nucleotide pyrophosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] D PAM18_4467 pncB2; nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21] D PAM18_5030 pncB1; nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21] D PAM18_1321 surE; stationary phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D PAM18_0934 nadD; nicotinic acid mononucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D PAM18_4104 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D PAM18_3221 nudC; NADH pyrophosphatase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22] D PAM18_5031 nadE; NAD synthetase K01916 nadE; NAD+ synthase [EC:6.3.1.5] D PAM18_1367 putative competence-damaged protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42] D PAM18_2899 putative ompetence-damaged protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42] D PAM18_5029 pncA; nicotinamidase K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-] D PAM18_3836 NAD-dependent deacetylase K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313] D PAM18_3907 putative cobalamin biosynthetic protein K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313] D PAM18_1875 ppnK; inorganic polyphosphate/ATP-NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] D PAM18_1969 sth; soluble pyridine nucleotide transhydrogenase K00322 sthA; NAD(P) transhydrogenase [EC:1.6.1.1] D PAM18_0195 pntAA; putative NAD(P) transhydrogenase, subunit alpha part 1 K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1] D PAM18_0196 pntAB; putative NAD(P) transhydrogenase, subunit alpha part 2 K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1] D PAM18_0197 pntB; pyridine nucleotide transhydrogenase, beta subunit K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1] D PAM18_3445 putative oxidoreductase K18029 nicA; nicotinate dehydrogenase subunit A [EC:1.17.2.1] D PAM18_3446 putative aldehyde dehydrogenase K18030 nicB; nicotinate dehydrogenase subunit B [EC:1.17.2.1] D PAM18_0260 gabD; succinate-semialdehyde dehydrogenase I K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00770 Pantothenate and CoA biosynthesis [PATH:paf00770] D PAM18_3009 thiamine pyrophosphate protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D PAM18_0757 acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D PAM18_3714 hypothetical protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D PAM18_4803 ilvI; acetolactate synthase 3 catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D PAM18_4802 ilvH; acetolactate synthase 3 regulatory subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D PAM18_4801 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D PAM18_0351 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D PAM18_3449 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D PAM18_4837 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D PAM18_4488 panE; 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D PAM18_3294 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D PAM18_4838 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D PAM18_0651 pantothenate kinase K03525 coaX; type III pantothenate kinase [EC:2.7.1.33] D PAM18_5440 coaC; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D PAM18_4104 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D PAM18_0361 coaD; phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D PAM18_4621 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D PAM18_4443 hypothetical protein K08682 acpH; acyl carrier protein phosphodiesterase [EC:3.1.4.14] D PAM18_5127 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D PAM18_0440 putative oxidoreductase K17722 preT; dihydropyrimidine dehydrogenase (NAD+) subunit PreT [EC:1.3.1.1] D PAM18_0439 dihydropyrimidine dehydrogenase K17723 preA; dihydropyrimidine dehydrogenase (NAD+) subunit PreA [EC:1.3.1.1] D PAM18_0441 dht; phenylhydantoinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D PAM18_0443 allantoate amidohydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D PAM18_4839 panD; aspartate alpha-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] D PAM18_5010 putative aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00780 Biotin metabolism [PATH:paf00780] D PAM18_0502 putative biotin synthesis protein BioC K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197] D PAM18_3438 fabB; 3-oxoacyl-(acyl carrier protein) synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D PAM18_0100 3-oxoacyl-(acyl carrier protein) synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D PAM18_3535 fabF2; 3-oxoacyl-(acyl carrier protein) synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D PAM18_1996 fabF1; 3-oxoacyl-(acyl carrier protein) synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D PAM18_4480 fabG; 3-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PAM18_3661 short chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PAM18_0182 fabG; 3-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PAM18_1994 fabG; 3-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PAM18_0851 3-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PAM18_4895 fabG; 3-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PAM18_5646 putative short-chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PAM18_1301 fabZ; (3R)-hydroxymyristoyl-ACP dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D PAM18_3238 fabI; NADH-dependent enoyl-ACP reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D PAM18_0501 putative biotin biosynthesis protein bioH K02170 bioH; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85] D PAM18_0500 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D PAM18_0420 bioA; adenosylmethionine--8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D PAM18_0503 bioD; dithiobiotin synthetase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3] D PAM18_0499 bioB; biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6] D PAM18_0650 biotin--protein ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism [PATH:paf00785] D PAM18_0943 lipB; lipoyltransferase K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181] D PAM18_0944 lis; lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8] D PAM18_3460 lpdG; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PAM18_2790 lpdV; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PAM18_4940 lpd3; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PAM18_5129 aceE; pyruvate dehydrogenase subunit E1 K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D PAM18_0785 branched-chain alpha-keto acid dehydrogenase subunit E2 K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D PAM18_5130 aceF; dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D PAM18_3462 sucA; 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D PAM18_3461 sucB; dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D PAM18_2793 bkdA1; 2-oxoisovalerate dehydrogenase (alpha subunit) K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D PAM18_1548 putative pyruvate dehydrogenase E1 component, alpha subunit K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D PAM18_2792 bkdA2; 2-oxoisovalerate dehydrogenase (beta subunit) K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D PAM18_1549 putative pyruvate dehydrogenase E1 component, beta chain K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D PAM18_2791 bkdB; branched-chain alpha-keto acid dehydrogenase subunit E2 K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D PAM18_1550 branched-chain alpha-keto acid dehydrogenase subunit E2 K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D PAM18_2588 gcvP2; glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D PAM18_5331 gcvP1; glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D PAM18_2591 gcvT2; glycine cleavage system protein T2 K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D PAM18_5333 gcvT; glycine cleavage system aminomethyltransferase T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D PAM18_2587 gcvH2; glycine cleavage system protein H K02437 gcvH; glycine cleavage system H protein D PAM18_5332 gcvH1; glycine cleavage system protein H K02437 gcvH; glycine cleavage system H protein D PAM18_4905 putative glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein C 00790 Folate biosynthesis [PATH:paf00790] D PAM18_3373 folE; GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D PAM18_1528 folE1; GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D PAM18_5661 putative GTP cyclohydrolase K09007 folE2; GTP cyclohydrolase IB [EC:3.5.4.16] D PAM18_1672 phoA; alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D PAM18_1030 putative phosphatase or phosphodiesterase K01113 phoD; alkaline phosphatase D [EC:3.1.3.1] D PAM18_0583 folB; dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81] D PAM18_0584 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D PAM18_4836 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D PAM18_4858 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D PAM18_0348 folA; dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D PAM18_1852 folC; folylpolyglutamate synthetase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D PAM18_0893 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D PAM18_0886 ribB; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D PAM18_3288 pabB; para-aminobenzoate synthase component I K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85] D PAM18_1997 pabC; 4-amino-4-deoxychorismate lyase K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38] D PAM18_1527 folX; D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase K07589 folX; D-erythro-7,8-dihydroneopterin triphosphate epimerase [EC:5.1.99.7] D PAM18_1529 short chain dehydrogenase K13938 folM; dihydromonapterin reductase / dihydrofolate reductase [EC:1.5.1.50 1.5.1.3] D PAM18_2307 putative 6-pyruvoyl tetrahydrobiopterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D PAM18_4168 phhB; pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D PAM18_4167 phhA; phenylalanine 4-monooxygenase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] D PAM18_4062 putative radical activating enzyme K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D PAM18_4061 hypothetical protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D PAM18_2157 queF; 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D PAM18_3626 moaA2; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D PAM18_1072 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D PAM18_1022 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D PAM18_1024 moaE; molybdopterin converting factor, large subunit K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D PAM18_1931 moaB2; molybdopterin biosynthetic protein B2 K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75] D PAM18_1025 moaB1; molybdopterin biosynthetic protein B1 K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75] D PAM18_1932 moeA2; molybdenum cofactor biosynthesis protein A2 K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D PAM18_1026 moeA1; molybdenum cofactor biosynthetic protein A1 K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D PAM18_4712 hypothetical protein K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76] D PAM18_1930 mobA; molybdopterin-guanine dinucleotide biosynthesis protein A K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77] C 00670 One carbon pool by folate [PATH:paf00670] D PAM18_0348 folA; dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D PAM18_1529 short chain dehydrogenase K13938 folM; dihydromonapterin reductase / dihydrofolate reductase [EC:1.5.1.50 1.5.1.3] D PAM18_3250 folD; 5,10-methylene-tetrahydrofolate dehydrogenase / cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D PAM18_4696 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D PAM18_2589 glyA2; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D PAM18_5535 glyA1; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D PAM18_4094 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D PAM18_4965 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D PAM18_0018 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D PAM18_2591 gcvT2; glycine cleavage system protein T2 K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D PAM18_5333 gcvT; glycine cleavage system aminomethyltransferase T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D PAM18_3199 metH; B12-dependent methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D PAM18_0340 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] D PAM18_4404 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D PAM18_5540 purU2; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D PAM18_0430 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D PAM18_5346 putative 5-formyltetrahydrofolate cyclo-ligase family protein K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:paf00860] D PAM18_1829 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D PAM18_4763 hemA; glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70] D PAM18_0852 aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D PAM18_0962 hemL; glutamate-1-semialdehyde aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D PAM18_5645 aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D PAM18_5362 hemB; delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D PAM18_5380 hemC; porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D PAM18_5379 hemD; uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75] D PAM18_5149 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37] D PAM18_0024 hemF; coproporphyrinogen III oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3] D PAM18_3503 hemN; coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3] D PAM18_0642 hypothetical protein K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-] D PAM18_4752 hemH; ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9] D PAM18_5378 putative uroporphyrin-III C-methyltransferase K02496 hemX; uroporphyrin-III C-methyltransferase [EC:2.1.1.107] D PAM18_2364 cysG; siroheme synthase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4] D PAM18_3268 cobA; uroporphyrin-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107] D PAM18_0509 putative uroporphyrin-III c-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107] D PAM18_0514 putative transcriptional regulator K22225 ahbAB; siroheme decarboxylase [EC:4.1.1.111] D PAM18_0512 putative transcriptional regulator K22225 ahbAB; siroheme decarboxylase [EC:4.1.1.111] D PAM18_0513 nirL; heme d1 biosynthesis protein NirL K22225 ahbAB; siroheme decarboxylase [EC:4.1.1.111] D PAM18_0511 nirH; heme d1 biosynthesis protein NirH K22225 ahbAB; siroheme decarboxylase [EC:4.1.1.111] D PAM18_0508 nirN; putative c-type cytochrome K24867 nirN; dihydro-heme d1 dehydrogenase D PAM18_0115 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D PAM18_3581 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D PAM18_0114 putative cytochrome oxidase assembly protein K02259 COX15; heme a synthase [EC:1.17.99.9] D PAM18_2058 cobI; precorrin-2 C(20)-methyltransferase K03394 cobI-cbiL; precorrin-2/cobalt-factor-2 C20-methyltransferase [EC:2.1.1.130 2.1.1.151] D PAM18_2056 putative oxidoreductase K02229 cobG; precorrin-3B synthase [EC:1.14.13.83] D PAM18_2059 cobJ; precorrin-3 methylase CobJ K13541 cbiGH-cobJ; cobalt-precorrin 5A hydrolase / cobalt-factor III methyltransferase / precorrin-3B C17-methyltransferase [EC:3.7.1.12 2.1.1.272 2.1.1.131] D PAM18_2013 cobM; precorrin-3 methylase K05936 cobM; precorrin-4/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271] D PAM18_2014 putative cobalamin biosynthesis protein K02189 cbiG; cobalt-precorrin 5A hydrolase [EC:3.7.1.12] D PAM18_2053 cobK; cobalt-precorrin-6x reductase K05895 cobK-cbiJ; precorrin-6A/cobalt-precorrin-6A reductase [EC:1.3.1.54 1.3.1.106] D PAM18_2054 cbiD; cobalt-precorrin-6A synthase K02188 cbiD; cobalt-precorrin-5B (C1)-methyltransferase [EC:2.1.1.195] D PAM18_2055 cobL; precorrin-6y-dependent methyltransferase CobL K00595 cobL-cbiET; precorrin-6B C5,15-methyltransferase / cobalt-precorrin-6B C5,C15-methyltransferase [EC:2.1.1.132 2.1.1.289 2.1.1.196] D PAM18_2057 cobH; precorrin-8X methylmutase K06042 cobH-cbiC; precorrin-8X/cobalt-precorrin-8 methylmutase [EC:5.4.99.61 5.4.99.60] D PAM18_3756 cobB; cobyrinic acid a,c-diamide synthase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11] D PAM18_3116 cobN; cobaltochelatase subunit CobN K02230 cobN; cobaltochelatase CobN [EC:6.6.1.2] D PAM18_2018 cobN; cobaltochelatase subunit CobN K02230 cobN; cobaltochelatase CobN [EC:6.6.1.2] D PAM18_4490 putative cob(I)alamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D PAM18_3757 cobO; cob(I)yrinic acid a,c-diamide adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D PAM18_3752 cobQ; cobyric acid synthase K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10] D PAM18_3754 cobD; cobalamin biosynthesis protein K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10] D PAM18_3753 cobC; threonine-phosphate decarboxylase K02225 cobC1; cobalamin biosynthesis protein CobC D PAM18_3751 cobU; adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62] D PAM18_3748 cobS; cobalamin synthase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26] D PAM18_3750 cobT; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21] D PAM18_3749 putative alpha-ribazole-5'-phosphate phosphatase K02226 cobC; alpha-ribazole phosphatase [EC:3.1.3.73] D PAM18_2020 putative magnesium chelatase K03405 chlI; magnesium chelatase subunit I [EC:6.6.1.1] D PAM18_4366 hemO; heme oxygenase K07215 pigA; heme oxygenase (biliverdin-IX-beta and delta-forming) [EC:1.14.99.58] D PAM18_4479 hypothetical protein K07226 hutZ; heme oxygenase (biliverdin-IX-beta and delta-forming) [EC:1.14.99.58] D PAM18_0695 bfrA; bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1] D PAM18_1455 bfrB; bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1] D PAM18_4992 putative bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:paf00130] D PAM18_4069 hypothetical protein K01075 E3.1.2.23; 4-hydroxybenzoyl-CoA thioesterase [EC:3.1.2.23] D PAM18_5477 ubiC; chorismate-pyruvate lyase K03181 ubiC; chorismate lyase [EC:4.1.3.40] D PAM18_5478 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D PAM18_5356 putative 3-octaprenyl-4-hydroxybenzoate carboxylyase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98] D PAM18_0921 aromatic acid decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D PAM18_5339 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240] D PAM18_1801 ubiG; 3-demethylubiquinone-9 3-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64] D PAM18_3946 3-demethylubiquinone-9 3-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64] D PAM18_5341 ubiH; 2-octaprenyl-6-methoxyphenyl hydroxylase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-] D PAM18_5178 ubiE; ubiquinone/menaquinone biosynthesis methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201] D PAM18_0636 putative ubiquinone biosynthesis protein K06134 COQ7; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60] D PAM18_0706 pchA; salicylate biosynthesis isochorismate synthase K01851 pchA; salicylate biosynthesis isochorismate synthase [EC:5.4.4.2] D PAM18_3429 putative thioesterase K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28] D PAM18_3808 putative NAD(P)H dehydrogenase K00355 NQO1; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D PAM18_5086 NAD(P)H quinone oxidoreductase K00355 NQO1; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D PAM18_3809 putative NAD(P)H dehydrogenase K00355 NQO1; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D PAM18_4187 putative oxidoreductase K00355 NQO1; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D PAM18_4089 wrbA; Trp repressor binding protein WrbA K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D PAM18_4174 hpd; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:paf00900] D PAM18_0896 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D PAM18_1296 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] D PAM18_1313 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60] D PAM18_4766 ipk; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D PAM18_1319 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12] D PAM18_1135 ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] D PAM18_4650 ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] D PAM18_3044 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_3310 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_1015 putative acyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_2485 putative acyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_4894 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_0921 aromatic acid decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D PAM18_0897 ispA; geranyltranstransferase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D PAM18_4662 ispB; octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D PAM18_1294 uppS; undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation [PATH:paf00903] D PAM18_5010 putative aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PAM18_2945 putative esterase/deacetylase K14731 mlhB; epsilon-lactone hydrolase [EC:3.1.1.83] C 00907 Pinene, camphor and geraniol degradation [PATH:paf00907] D PAM18_3418 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D PAM18_1394 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D PAM18_1946 fadB; multifunctional fatty acid oxidation complex subunit alpha K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D PAM18_3309 putative 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D PAM18_2076 atuB; putative dehydrogenase involved in catabolism of citronellol K13774 atuB; citronellol/citronellal dehydrogenase D PAM18_2071 atuG; short chain dehydrogenase K13775 atuG; citronellol/citronellal dehydrogenase D PAM18_2070 atuH; acyl-CoA synthetase K13776 atuH; citronellyl-CoA synthetase [EC:6.2.1.-] D PAM18_2074 atuD; putative citronellyl-CoA dehydrogenase involved in catabolism of citronellol K11731 atuD; citronellyl-CoA dehydrogenase [EC:1.3.99.-] D PAM18_2072 atuF; geranyl-CoA carboxylase, alpha-subunit (biotin-containing) K13777 atuF; geranyl-CoA carboxylase alpha subunit [EC:6.4.1.5] D PAM18_2075 atuC; geranyl-CoA carboxylase, beta-subunit K13778 atuC; geranyl-CoA carboxylase beta subunit [EC:6.4.1.5] D PAM18_2073 atuE; putative isohexenylglutaconyl-CoA hydratase K13779 atuE; isohexenylglutaconyl-CoA hydratase [EC:4.2.1.57] D PAM18_3034 liuE; hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D PAM18_1947 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D PAM18_1511 putative acyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D PAM18_2022 putative acyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D PAM18_0549 tktA; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products D PAM18_2383 pltM; pltM K14257 ctcP; tetracycline 7-halogenase / FADH2 O2-dependent halogenase [EC:1.14.19.49 1.14.19.-] D PAM18_2389 pltD; putative halogenase K14257 ctcP; tetracycline 7-halogenase / FADH2 O2-dependent halogenase [EC:1.14.19.49 1.14.19.-] C 00253 Tetracycline biosynthesis D PAM18_2383 pltM; pltM K14257 ctcP; tetracycline 7-halogenase / FADH2 O2-dependent halogenase [EC:1.14.19.49 1.14.19.-] D PAM18_2389 pltD; putative halogenase K14257 ctcP; tetracycline 7-halogenase / FADH2 O2-dependent halogenase [EC:1.14.19.49 1.14.19.-] C 00523 Polyketide sugar unit biosynthesis [PATH:paf00523] D PAM18_5280 rmlA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D PAM18_5278 rmlB; dTDP-D-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D PAM18_5281 rmlC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D PAM18_0871 putative dTDP-4-rhamnose reductase-related protein K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D PAM18_5279 rmlD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides [PATH:paf01053] D PAM18_0706 pchA; salicylate biosynthesis isochorismate synthase K01851 pchA; salicylate biosynthesis isochorismate synthase [EC:5.4.4.2] D PAM18_3868 pcpS; PcpS K02362 entD; enterobactin synthetase component D [EC:6.3.2.14 2.7.8.-] D PAM18_0707 pchB; isochorismate-pyruvate lyase K04782 pchB; isochorismate pyruvate lyase [EC:4.2.99.21] D PAM18_0709 pchD; pyochelin biosynthesis protein PchD K12238 pchD; salicylate---[aryl-carrier protein] ligase [EC:6.2.1.61] D PAM18_0711 pchE; dihydroaeruginoic acid synthetase K12239 pchE; L-cysteine---[L-cysteinyl-carrier protein] ligase PchE [EC:6.2.1.69] D PAM18_0712 pchF; pyochelin synthetase K12240 pchF; L-cysteine---[L-cysteinyl-carrier protein] ligase PchF [EC:6.2.1.69] D PAM18_0713 pchG; pyochelin biosynthetic protein PchG K12241 pchG; pyochelin biosynthesis protein PchG C 01055 Biosynthesis of vancomycin group antibiotics D PAM18_5278 rmlB; dTDP-D-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids [PATH:paf00946] D PAM18_3320 bglX; periplasmic beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21] C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis D PAM18_3149 putative penicillin acylase K01434 pac; penicillin G amidase [EC:3.5.1.11] D PAM18_0300 putative penicillin amidase K01434 pac; penicillin G amidase [EC:3.5.1.11] C 00332 Carbapenem biosynthesis [PATH:paf00332] D PAM18_4658 proB; gamma-glutamyl kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D PAM18_0933 proA; gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] C 00261 Monobactam biosynthesis [PATH:paf00261] D PAM18_2630 putative MbtH-like protein K05375 mbtH; MbtH protein D PAM18_4533 cysN; bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D PAM18_4534 cysD; sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D PAM18_4135 lysC; aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D PAM18_1846 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D PAM18_3154 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D PAM18_4038 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D PAM18_0749 putative dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D PAM18_0219 putative dihydrodipicolinate synthetase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D PAM18_4867 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:paf00521] D PAM18_1779 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D PAM18_5442 algC; phosphomannomutase AlgC K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D PAM18_1120 extragenic suppressor protein SuhB K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D PAM18_5280 rmlA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D PAM18_5278 rmlB; dTDP-D-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D PAM18_5281 rmlC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D PAM18_0871 putative dTDP-4-rhamnose reductase-related protein K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D PAM18_5279 rmlD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 00524 Neomycin, kanamycin and gentamicin biosynthesis D PAM18_1779 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] C 00525 Acarbose and validamycin biosynthesis [PATH:paf00525] D PAM18_5280 rmlA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D PAM18_5278 rmlB; dTDP-D-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00401 Novobiocin biosynthesis [PATH:paf00401] D PAM18_4169 phhC; aromatic amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D PAM18_1807 hisC2; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D PAM18_4538 hisC1; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D PAM18_2507 putative aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D PAM18_1824 aromatic amino acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] C 00404 Staurosporine biosynthesis D PAM18_2383 pltM; pltM K14257 ctcP; tetracycline 7-halogenase / FADH2 O2-dependent halogenase [EC:1.14.19.49 1.14.19.-] D PAM18_2389 pltD; putative halogenase K14257 ctcP; tetracycline 7-halogenase / FADH2 O2-dependent halogenase [EC:1.14.19.49 1.14.19.-] C 00405 Phenazine biosynthesis [PATH:paf00405] D PAM18_3139 phzE2; phenazine biosynthesis protein PhzE K13063 phzE; 2-amino-4-deoxychorismate synthase [EC:2.6.1.86] D PAM18_0723 phzE1; phenazine biosynthesis protein PhzE K13063 phzE; 2-amino-4-deoxychorismate synthase [EC:2.6.1.86] D PAM18_3140 phzD2; phenazine biosynthesis protein PhzD K20261 phzD; trans-2,3-dihydro-3-hydroxyanthranilic acid synthase [EC:3.3.2.15] D PAM18_0724 phzD1; phenazine biosynthesis protein PhzD K20261 phzD; trans-2,3-dihydro-3-hydroxyanthranilic acid synthase [EC:3.3.2.15] D PAM18_3138 phzF2; putative phenazine biosynthesis protein K06998 phzF; trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17] D PAM18_0722 phzF1; putative phenazine biosynthesis protein K06998 phzF; trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17] D PAM18_0727 phzA1; putative phenazine biosynthesis protein K20260 phzA_B; phenazine biosynthesis protein D PAM18_3143 phzA2; putative phenazine biosynthesis protein K20260 phzA_B; phenazine biosynthesis protein D PAM18_0726 phzB1; putative phenazine biosynthesis protein K20260 phzA_B; phenazine biosynthesis protein D PAM18_3142 phzB2; putative phenazine biosynthesis protein K20260 phzA_B; phenazine biosynthesis protein D PAM18_3137 phzG2; putative pyridoxamine 5'-phosphate oxidase K20262 phzG; dihydrophenazinedicarboxylate synthase [EC:1.10.3.16] D PAM18_0721 phzG1; putative pyridoxamine 5'-phosphate oxidase K20262 phzG; dihydrophenazinedicarboxylate synthase [EC:1.10.3.16] D PAM18_0728 phzM; putative phenazine-specific methyltransferase K21103 phzM; phenazine-1-carboxylate N-methyltransferase [EC:2.1.1.327] D PAM18_0720 phzS; putative flavin-containing monooxygenase K20940 phzS; 5-methylphenazine-1-carboxylate 1-monooxygenase [EC:1.14.13.218] D PAM18_4047 phnA; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D PAM18_0610 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D PAM18_0630 trpG; anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D PAM18_4046 phnB; anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D PAM18_4052 pqsA; putative coenzyme A ligase K18000 pqsA; anthranilate-CoA ligase [EC:6.2.1.32] D PAM18_4049 pqsD; 3-oxoacyl-(acyl carrier protein) synthase III K18003 pqsD; anthraniloyl-CoA anthraniloyltransferase [EC:2.3.1.262] D PAM18_4048 pqsE; Quinolone signal response protein K20257 pqsE; 2-aminobenzoylacetyl-CoA thioesterase [EC:3.1.2.32] D PAM18_4051 pqsB; beta-keto-acyl-acyl-carrier protein synthase-like protein K18001 pqsB; 2-heptyl-4(1H)-quinolone synthase subunit PqsB [EC:2.3.1.230] D PAM18_4050 pqsC; beta-keto-acyl-acyl-carrier protein synthase-like protein K18002 pqsC; 2-heptyl-4(1H)-quinolone synthase subunit PqsC [EC:2.3.1.230] D PAM18_2406 pqsH; putative FAD-dependent monooxygenase K17940 pqsH; 2-heptyl-3-hydroxy-4(1H)-quinolone synthase [EC:1.14.13.182] C 00333 Prodigiosin biosynthesis D PAM18_1993 fabD; malonyl-CoA-[acyl-carrier-protein] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D PAM18_4480 fabG; 3-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PAM18_3661 short chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PAM18_0182 fabG; 3-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PAM18_1994 fabG; 3-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PAM18_0851 3-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PAM18_4895 fabG; 3-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PAM18_5646 putative short-chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PAM18_3238 fabI; NADH-dependent enoyl-ACP reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D PAM18_1995 acpP; acyl carrier protein K02078 acpP; acyl carrier protein D PAM18_1631 putative acyl carrier protein K02078 acpP; acyl carrier protein D PAM18_3172 putative acyl carrier protein K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites [PATH:paf00999] D PAM18_0547 metK; S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D PAM18_0025 aroE; shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D PAM18_3320 bglX; periplasmic beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21] C 00997 Biosynthesis of various other secondary metabolites [PATH:paf00997] D PAM18_2786 pvcA; pyoverdine biosynthesis protein PvcA K22952 pvcA; L-tyrosine isonitrile synthase [EC:4.1.99.24] D PAM18_2785 pvcB; pyoverdine biosynthesis protein PvcB K22874 pvcB; L-tyrosine isonitrile desaturase/decarboxylase [EC:1.14.20.9 1.14.20.10] D PAM18_2784 pvcC; pyoverdine biosynthesis protein PvcC K25524 pvcC; paerucumarin biosynthesis protein PvcC [EC:1.14.-.-] D PAM18_2783 pvcD; pyoverdine biosynthesis protein PvcD K25525 pvcD; paerucumarin biosynthesis protein PvcD D PAM18_2607 PvdYII K03896 iucB; acetyl CoA:N6-hydroxylysine acetyl transferase [EC:2.3.1.102] B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation [PATH:paf00362] D PAM18_2521 xylX; toluate 1,2-dioxygenase alpha subunit K05549 benA-xylX; benzoate/toluate 1,2-dioxygenase subunit alpha [EC:1.14.12.10 1.14.12.-] D PAM18_2522 xylY; toluate 1,2-dioxygenase beta subunit K05550 benB-xylY; benzoate/toluate 1,2-dioxygenase subunit beta [EC:1.14.12.10 1.14.12.-] D PAM18_2523 xylZ; toluate 1,2-dioxygenase electron transfer component K05784 benC-xylZ; benzoate/toluate 1,2-dioxygenase reductase component [EC:1.18.1.-] D PAM18_2524 benD; 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase K05783 benD-xylL; dihydroxycyclohexadiene carboxylate dehydrogenase [EC:1.3.1.25 1.3.1.-] D PAM18_2532 catA; catechol 1,2-dioxygenase K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1] D PAM18_2530 catB; muconate cycloisomerase I K01856 catB; muconate cycloisomerase [EC:5.5.1.1] D PAM18_2531 catC; muconolactone delta-isomerase K03464 catC; muconolactone D-isomerase [EC:5.3.3.4] D PAM18_0479 putative hydrolase K01055 pcaD; 3-oxoadipate enol-lactonase [EC:3.1.1.24] D PAM18_0227 pcaD; beta-ketoadipate enol-lactone hydrolase K01055 pcaD; 3-oxoadipate enol-lactonase [EC:3.1.1.24] D PAM18_1745 putative hydrolase K01055 pcaD; 3-oxoadipate enol-lactonase [EC:3.1.1.24] D PAM18_1947 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D PAM18_1511 putative acyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D PAM18_2022 putative acyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D PAM18_0224 pcaF; beta-ketoadipyl CoA thiolase K07823 pcaF; 3-oxoadipyl-CoA thiolase [EC:2.3.1.174] D PAM18_3945 Isopropylmalate/homocitrate/citramalate synthase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] D PAM18_0155 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit K00448 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3] D PAM18_0154 pcaH; protocatechuate 3,4-dioxygenase, beta subunit K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3] D PAM18_0226 pcaB; 3-carboxy-cis,cis-muconate cycloisomerase K01857 pcaB; 3-carboxy-cis,cis-muconate cycloisomerase [EC:5.5.1.2] D PAM18_4577 putative carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D PAM18_0228 pcaC; gamma-carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D PAM18_0243 pobA; 4-hydroxybenzoate 3-monooxygenase K00481 pobA; p-hydroxybenzoate 3-monooxygenase [EC:1.14.13.2] D PAM18_4069 hypothetical protein K01075 E3.1.2.23; 4-hydroxybenzoyl-CoA thioesterase [EC:3.1.2.23] D PAM18_3309 putative 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D PAM18_1946 fadB; multifunctional fatty acid oxidation complex subunit alpha K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D PAM18_0445 gcdH; glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D PAM18_3418 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D PAM18_1394 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D PAM18_1395 3-hydroxy-acyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D PAM18_3419 3-hydroxy-acyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D PAM18_3044 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_3310 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_1015 putative acyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_2485 putative acyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_4894 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00627 Aminobenzoate degradation [PATH:paf00627] D PAM18_3825 putative flavoprotein involved in K+ transport K10215 ethA; monooxygenase [EC:1.14.13.-] D PAM18_1599 amiE; acylamide amidohydrolase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D PAM18_4432 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D PAM18_4333 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D PAM18_0774 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D PAM18_4083 putative acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D PAM18_5012 mdlC; benzoylformate decarboxylase K01576 mdlC; benzoylformate decarboxylase [EC:4.1.1.7] D PAM18_0921 aromatic acid decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D PAM18_2527 antA; anthranilate dioxygenase large subunit K05599 antA; anthranilate 1,2-dioxygenase (deaminating, decarboxylating) large subunit [EC:1.14.12.1] D PAM18_2526 antB; anthranilate dioxygenase small subunit K05600 antB; anthranilate 1,2-dioxygenase (deaminating, decarboxylating) small subunit [EC:1.14.12.1] D PAM18_2525 antC; anthranilate dioxygenase reductase K11311 antC; anthranilate 1,2-dioxygenase reductase component [EC:1.18.1.-] D PAM18_5015 vanA; vanillate O-demethylase oxygenase subunit K03862 vanA; vanillate monooxygenase [EC:1.14.13.82] D PAM18_5016 vanB; vanillate O-demethylase oxidoreductase K03863 vanB; vanillate monooxygenase ferredoxin subunit D PAM18_3418 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D PAM18_1394 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] C 00364 Fluorobenzoate degradation [PATH:paf00364] D PAM18_2521 xylX; toluate 1,2-dioxygenase alpha subunit K05549 benA-xylX; benzoate/toluate 1,2-dioxygenase subunit alpha [EC:1.14.12.10 1.14.12.-] D PAM18_2522 xylY; toluate 1,2-dioxygenase beta subunit K05550 benB-xylY; benzoate/toluate 1,2-dioxygenase subunit beta [EC:1.14.12.10 1.14.12.-] D PAM18_2523 xylZ; toluate 1,2-dioxygenase electron transfer component K05784 benC-xylZ; benzoate/toluate 1,2-dioxygenase reductase component [EC:1.18.1.-] D PAM18_2524 benD; 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase K05783 benD-xylL; dihydroxycyclohexadiene carboxylate dehydrogenase [EC:1.3.1.25 1.3.1.-] D PAM18_2532 catA; catechol 1,2-dioxygenase K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1] D PAM18_2291 putative dienelactone hydrolase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D PAM18_2530 catB; muconate cycloisomerase I K01856 catB; muconate cycloisomerase [EC:5.5.1.1] C 00625 Chloroalkane and chloroalkene degradation [PATH:paf00625] D PAM18_5547 adhA; alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D PAM18_1317 adhC; alcohol dehydrogenase class III K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D PAM18_5010 putative aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PAM18_5541 fdhA; glutathione-independent formaldehyde dehydrogenase K00148 fdhA; glutathione-independent formaldehyde dehydrogenase [EC:1.2.1.46] D PAM18_3063 exaA; quinoprotein alcohol dehydrogenase K00114 exaA; alcohol dehydrogenase (cytochrome c) [EC:1.1.2.8] D PAM18_2957 putative epoxide hydrolase K01561 dehH; haloacetate dehalogenase [EC:3.8.1.3] D PAM18_4227 putative haloacid dehalogenase K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:paf00361] D PAM18_2532 catA; catechol 1,2-dioxygenase K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1] D PAM18_2291 putative dienelactone hydrolase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D PAM18_2530 catB; muconate cycloisomerase I K01856 catB; muconate cycloisomerase [EC:5.5.1.1] D PAM18_4227 putative haloacid dehalogenase K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] D PAM18_2957 putative epoxide hydrolase K01561 dehH; haloacetate dehalogenase [EC:3.8.1.3] C 00623 Toluene degradation [PATH:paf00623] D PAM18_2532 catA; catechol 1,2-dioxygenase K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1] D PAM18_2530 catB; muconate cycloisomerase I K01856 catB; muconate cycloisomerase [EC:5.5.1.1] D PAM18_2291 putative dienelactone hydrolase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00622 Xylene degradation [PATH:paf00622] D PAM18_2521 xylX; toluate 1,2-dioxygenase alpha subunit K05549 benA-xylX; benzoate/toluate 1,2-dioxygenase subunit alpha [EC:1.14.12.10 1.14.12.-] D PAM18_2522 xylY; toluate 1,2-dioxygenase beta subunit K05550 benB-xylY; benzoate/toluate 1,2-dioxygenase subunit beta [EC:1.14.12.10 1.14.12.-] D PAM18_2523 xylZ; toluate 1,2-dioxygenase electron transfer component K05784 benC-xylZ; benzoate/toluate 1,2-dioxygenase reductase component [EC:1.18.1.-] D PAM18_2524 benD; 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase K05783 benD-xylL; dihydroxycyclohexadiene carboxylate dehydrogenase [EC:1.3.1.25 1.3.1.-] D PAM18_2960 putative ring-hydroxylating dioxygenase subunit K10619 cmtAb; p-cumate 2,3-dioxygenase subunit alpha [EC:1.14.12.25] D PAM18_2958 putative ring-hydroxylating dioxygenase small subunit K16303 cmtAc; p-cumate 2,3-dioxygenase subunit beta [EC:1.14.12.25] D PAM18_3945 Isopropylmalate/homocitrate/citramalate synthase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] C 00633 Nitrotoluene degradation [PATH:paf00633] D PAM18_2029 morB; morphinone reductase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-] D PAM18_3568 putative oxidoreductase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-] C 00642 Ethylbenzene degradation D PAM18_1947 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D PAM18_1511 putative acyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D PAM18_2022 putative acyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 00643 Styrene degradation [PATH:paf00643] D PAM18_0867 putative aldehyde dehydrogenase K00146 feaB; phenylacetaldehyde dehydrogenase [EC:1.2.1.39] D PAM18_3036 hmgA; homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5] D PAM18_3038 maiA; maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2] D PAM18_2566 putative glutathione S-transferase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2] D PAM18_3037 fahA; fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2] D PAM18_1599 amiE; acylamide amidohydrolase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D PAM18_4432 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D PAM18_4333 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D PAM18_0774 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D PAM18_0222 putative CoA transferase, subunit A K01039 gctA; glutaconate CoA-transferase, subunit A [EC:2.8.3.12] D PAM18_0223 putative CoA transferase, subunit B K01040 gctB; glutaconate CoA-transferase, subunit B [EC:2.8.3.12] C 00791 Atrazine degradation [PATH:paf00791] D PAM18_0494 putative hydrolase K01941 uca; urea carboxylase [EC:6.3.4.6] D PAM18_4980 ureC; urease subunit alpha K01428 ureC; urease subunit alpha [EC:3.5.1.5] D PAM18_4979 ureB; urease subunit beta K01429 ureB; urease subunit beta [EC:3.5.1.5] D PAM18_4977 ureA; urease subunit gamma K01430 ureA; urease subunit gamma [EC:3.5.1.5] C 00930 Caprolactam degradation [PATH:paf00930] D PAM18_2419 alkB1; alkane-1-monooxygenase K00496 alkB1_2; alkane 1-monooxygenase [EC:1.14.15.3] D PAM18_3523 alkB2; alkane-1-monooxygenase 2 K00496 alkB1_2; alkane 1-monooxygenase [EC:1.14.15.3] D PAM18_2945 putative esterase/deacetylase K14731 mlhB; epsilon-lactone hydrolase [EC:3.1.1.83] D PAM18_3416 putative acyl-CoA dehydrogenase K06446 DCAA; acyl-CoA dehydrogenase [EC:1.3.99.-] D PAM18_3418 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D PAM18_1394 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D PAM18_1946 fadB; multifunctional fatty acid oxidation complex subunit alpha K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D PAM18_3309 putative 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] C 00363 Bisphenol degradation D PAM18_0845 putative 2,4'-dihydroxyacetophenone dioxygenase K05913 dad; 2,4'-dihydroxyacetophenone dioxygenase [EC:1.13.11.41] C 00621 Dioxin degradation D PAM18_3945 Isopropylmalate/homocitrate/citramalate synthase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] C 00626 Naphthalene degradation [PATH:paf00626] D PAM18_5547 adhA; alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D PAM18_1317 adhC; alcohol dehydrogenase class III K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] C 00624 Polycyclic aromatic hydrocarbon degradation D PAM18_0155 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit K00448 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3] D PAM18_0154 pcaH; protocatechuate 3,4-dioxygenase, beta subunit K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3] C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:paf03020] D PAM18_0660 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D PAM18_0661 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D PAM18_0692 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D PAM18_5457 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] C 03022 Basal transcription factors D PAM18_3176 putative DNA helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:paf03010] D PAM18_1810 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D PAM18_1290 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D PAM18_0673 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D PAM18_0691 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D PAM18_0684 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D PAM18_5046 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D PAM18_0663 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D PAM18_0681 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D PAM18_4523 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D PAM18_0666 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D PAM18_0690 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D PAM18_0662 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D PAM18_0689 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D PAM18_0680 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D PAM18_4849 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D PAM18_1200 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D PAM18_0676 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D PAM18_5045 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D PAM18_0671 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D PAM18_4656 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D PAM18_0580 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D PAM18_0657 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D PAM18_0670 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D PAM18_0667 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D PAM18_0668 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D PAM18_0679 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D PAM18_0682 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D PAM18_0659 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D PAM18_5043 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D PAM18_0658 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D PAM18_0656 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D PAM18_4524 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D PAM18_0677 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D PAM18_0686 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D PAM18_0674 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D PAM18_0693 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D PAM18_0683 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D PAM18_1203 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D PAM18_2232 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D PAM18_4661 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D PAM18_0672 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D PAM18_0669 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D PAM18_0678 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D PAM18_4768 50S ribosomal protein L25/general stress protein Ctc K02897 RP-L25; large subunit ribosomal protein L25 D PAM18_4660 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D PAM18_5436 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D PAM18_0675 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D PAM18_0685 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D PAM18_1384 rpmE2; 50S ribosomal protein L31 type B K02909 RP-L31; large subunit ribosomal protein L31 D PAM18_5164 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D PAM18_1991 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D PAM18_5435 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D PAM18_5698 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D PAM18_2231 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D PAM18_1385 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D PAM18_0688 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D PAM18_R004 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D PAM18_R055 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D PAM18_R066 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D PAM18_R080 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D PAM18_R007 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D PAM18_R052 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D PAM18_R077 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D PAM18_R065 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D PAM18_R008 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D PAM18_R051 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D PAM18_R076 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D PAM18_R064 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:paf00970] D PAM18_R019 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D PAM18_R021 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D PAM18_R006 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D PAM18_R078 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D PAM18_R053 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D PAM18_R041 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D PAM18_R046 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D PAM18_R047 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D PAM18_R061 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D PAM18_R001 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D PAM18_R015 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D PAM18_R018 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D PAM18_R060 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D PAM18_R017 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D PAM18_R025 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D PAM18_R024 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D PAM18_R037 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D PAM18_R035 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D PAM18_R062 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D PAM18_R020 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D PAM18_R028 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D PAM18_R022 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D PAM18_R029 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D PAM18_R030 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D PAM18_R034 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D PAM18_R010 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D PAM18_R050 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D PAM18_R038 tRNA-His K14226 tRNA-His; tRNA His D PAM18_R040 tRNA-His K14226 tRNA-His; tRNA His D PAM18_R005 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D PAM18_R079 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D PAM18_R054 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D PAM18_R036 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D PAM18_R039 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D PAM18_R070 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D PAM18_R013 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D PAM18_R072 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D PAM18_R073 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D PAM18_R058 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D PAM18_R003 tRNA-Met K14230 tRNA-Met; tRNA Met D PAM18_R069 tRNA-Met K14230 tRNA-Met; tRNA Met D PAM18_R045 tRNA-Met K14230 tRNA-Met; tRNA Met D PAM18_R063 tRNA-Met K14230 tRNA-Met; tRNA Met D PAM18_R074 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D PAM18_R059 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D PAM18_R032 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D PAM18_R026 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D PAM18_R027 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D PAM18_R043 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D PAM18_R048 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D PAM18_R033 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D PAM18_R075 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D PAM18_R011 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D PAM18_R057 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D PAM18_R012 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D PAM18_R009 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D PAM18_R031 tRNA-Val K14237 tRNA-Val; tRNA Val D PAM18_R016 tRNA-Val K14237 tRNA-Val; tRNA Val D PAM18_R023 tRNA-Val K14237 tRNA-Val; tRNA Val D PAM18_R071 tRNA-Sec K14238 tRNA-Sec; tRNA Sec D PAM18_1829 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D PAM18_4574 gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D PAM18_4575 gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D PAM18_4573 gatC; aspartyl/glutamyl-tRNA amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D PAM18_3252 glnS; glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D PAM18_4136 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D PAM18_4074 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D PAM18_0009 glyQ; glycyl-tRNA synthetase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D PAM18_0008 glyS; glycyl-tRNA synthetase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D PAM18_2229 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D PAM18_2363 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D PAM18_4917 selA; selenocysteine synthase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] D PAM18_3251 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D PAM18_1483 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D PAM18_0018 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D PAM18_1104 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D PAM18_0952 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D PAM18_4653 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D PAM18_1246 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D PAM18_5166 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D PAM18_4081 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D PAM18_1136 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D PAM18_2233 pheS; phenylalanyl-tRNA synthetase, alpha-subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D PAM18_2234 pheT; phenylalanyl-tRNA synthetase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D PAM18_0649 tyrZ; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D PAM18_4530 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:paf03060] D PAM18_0687 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D PAM18_0654 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D PAM18_4855 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D PAM18_1117 secD; preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D PAM18_1118 secF; preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D PAM18_1116 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D PAM18_5696 putative inner membrane protein translocase component YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D PAM18_4494 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D PAM18_5242 secB; preprotein translocase subunit SecB K03071 secB; preprotein translocase subunit SecB D PAM18_1199 ffh; signal recognition particle protein Ffh K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D PAM18_R042 ffs; 4.5S ribosomal RNA K01983 ffs; SRP RNA D PAM18_0372 ftsY; signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor D PAM18_5183 tatA; twin arginine translocase protein A K03116 tatA; sec-independent protein translocase protein TatA D PAM18_5184 tatB; sec-independent translocase K03117 tatB; sec-independent protein translocase protein TatB D PAM18_5185 tatC; transport protein TatC K03118 tatC; sec-independent protein translocase protein TatC D PAM18_4270 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D PAM18_3600 putative signal peptidase K03100 lepB; signal peptidase I [EC:3.4.21.89] D PAM18_4652 lspA; lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:paf04122] D PAM18_1124 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D PAM18_2982 putative pyridoxal-phosphate dependent enzyme K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D PAM18_3737 putative 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D PAM18_5067 rhdA; thiosulfate:cyanide sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D PAM18_3484 sulfur transfer protein SirA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D PAM18_4042 hypothetical protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D PAM18_2368 putative DsrH family protein K07237 tusB; tRNA 2-thiouridine synthesizing protein B D PAM18_2369 sulfur relay protein TusC K07236 tusC; tRNA 2-thiouridine synthesizing protein C D PAM18_2370 sulfur transfer complex subunit TusD K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-] D PAM18_2367 putative desulfoviridin gamma subunit K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-] D PAM18_2349 mnmA; tRNA-specific 2-thiouridylase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D PAM18_1024 moaE; molybdopterin converting factor, large subunit K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D PAM18_3626 moaA2; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D PAM18_1072 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D PAM18_1023 moaD; molybdopterin converting factor, small subunit K03636 moaD; sulfur-carrier protein D PAM18_3547 hypothetical protein K03636 moaD; sulfur-carrier protein D PAM18_4760 moeB; molybdopterin biosynthesis protein MoeB K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80] D PAM18_2940 molybdopterin biosynthesis protein MoeB K21147 moeZR; sulfur-carrier protein adenylyltransferase/sulfurtransferase [EC:2.7.7.80 2.7.7.- 2.8.1.11 2.8.1.-] D PAM18_1022 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D PAM18_1931 moaB2; molybdopterin biosynthetic protein B2 K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75] D PAM18_1025 moaB1; molybdopterin biosynthetic protein B1 K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75] D PAM18_5232 thiI; thiamine biosynthesis protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D PAM18_0379 sulfur carrier protein ThiS K03154 thiS; sulfur carrier protein D PAM18_2941 hypothetical protein K21140 mec; [CysO sulfur-carrier protein]-S-L-cysteine hydrolase [EC:3.13.1.6] C 03050 Proteasome C 03018 RNA degradation [PATH:paf03018] D PAM18_0334 ygdP; dinucleoside polyphosphate hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D PAM18_1985 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12] D PAM18_1077 rhl; ATP-dependent RNA helicase RhlB K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7] D PAM18_1311 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D PAM18_4848 pnp; polynucleotide phosphorylase/polyadenylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D PAM18_0428 putative ATP-dependent RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D PAM18_0990 putative ATP-dependent RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D PAM18_5048 rnr; exoribonuclease RNase R K12573 rnr; ribonuclease R [EC:3.1.13.1] D PAM18_2123 putative ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D PAM18_1621 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D PAM18_5358 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D PAM18_4869 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D PAM18_4476 groEL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D PAM18_5055 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein D PAM18_5361 ppk; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D PAM18_2606 hypothetical protein K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D PAM18_0142 hypothetical protein K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D PAM18_4835 pcnB; poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] B B 09124 Replication and repair C 03030 DNA replication [PATH:paf03030] D PAM18_1739 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D PAM18_3228 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D PAM18_1306 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D PAM18_3516 dnaX; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D PAM18_2000 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D PAM18_0950 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D PAM18_1106 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D PAM18_0002 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D PAM18_5042 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D PAM18_0578 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D PAM18_0698 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D PAM18_3229 rnhA; ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D PAM18_1304 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D PAM18_5614 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D PAM18_3519 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:paf03410] D PAM18_1473 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D PAM18_4289 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D PAM18_5263 mutY; A/G specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D PAM18_0930 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] D PAM18_0355 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D PAM18_3360 alkA; DNA-3-methyladenine glycosidase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D PAM18_0010 tag; DNA-3-methyladenine glycosidase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D PAM18_0765 putative nuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D PAM18_2493 xthA; exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D PAM18_5452 crc; catabolite repression control protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D PAM18_5614 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D PAM18_1221 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D PAM18_3519 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:paf03420] D PAM18_1958 mfd; transcription-repair coupling protein Mfd K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D PAM18_0696 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D PAM18_1825 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D PAM18_2408 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C D PAM18_5565 uvrD; DNA-dependent helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D PAM18_5614 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D PAM18_3519 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D PAM18_3176 putative DNA helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] C 03430 Mismatch repair [PATH:paf03430] D PAM18_1326 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D PAM18_5057 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D PAM18_5565 uvrD; DNA-dependent helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D PAM18_4406 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] D PAM18_1162 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D PAM18_0898 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D PAM18_1221 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D PAM18_0698 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D PAM18_1306 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D PAM18_0002 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D PAM18_3516 dnaX; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D PAM18_0950 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D PAM18_2000 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D PAM18_1739 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D PAM18_3228 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D PAM18_1106 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D PAM18_3519 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03440 Homologous recombination [PATH:paf03440] D PAM18_1221 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D PAM18_0698 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D PAM18_0003 recF; recombination protein F K03629 recF; DNA replication and repair protein RecF D PAM18_4266 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D PAM18_3514 recR; recombination protein RecR K06187 recR; recombination protein RecR D PAM18_1368 recA; recombinase A K03553 recA; recombination protein RecA D PAM18_5614 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D PAM18_4071 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D PAM18_4070 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D PAM18_4072 ruvC; Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D PAM18_5465 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D PAM18_4373 recB; exodeoxyribonuclease V beta chain K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] D PAM18_4374 recC; exodeoxyribonuclease V gamma chain K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] D PAM18_4372 recD; exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D PAM18_1306 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D PAM18_0002 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D PAM18_3516 dnaX; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D PAM18_0950 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D PAM18_2000 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D PAM18_1739 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D PAM18_3228 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D PAM18_1106 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D PAM18_5165 priA; primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D PAM18_2245 hypothetical protein K04067 priC; primosomal replication protein N'' C 03450 Non-homologous end-joining [PATH:paf03450] D PAM18_2888 putative KU domain protein K10979 ku; DNA end-binding protein Ku D PAM18_2902 ligD; ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 [PATH:paf03250] D PAM18_1744 ppiA; peptidyl-prolyl cis-trans isomerase A K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:paf02010] D PAM18_3638 cysP; sulfate-binding protein of ABC transporter K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein D PAM18_0278 sbp; sulfate-binding protein precursor K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D PAM18_0277 cysT; sulfate transport protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D PAM18_0276 cysW; sulfate transport protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D PAM18_0275 cysA; sulfate transport protein CysA K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D PAM18_1002 putative periplasmic taurine-binding protein precursor K15551 tauA; taurine transport system substrate-binding protein D PAM18_1004 putative permease of ABC taurine transporter K15552 tauC; taurine transport system permease protein D PAM18_1003 putative ATP-binding component of ABC taurine transporter K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7] D PAM18_2379 putative periplasmic aliphatic sulfonate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D PAM18_2380 putative periplasmic aliphatic sulfonate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D PAM18_2381 putative periplasmic aliphatic sulfonate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D PAM18_1516 putative sulfonate binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D PAM18_1520 putative ABC-type transporter periplasmic sulfonate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D PAM18_0186 putative binding protein component of ABC transporter K15553 ssuA; sulfonate transport system substrate-binding protein D PAM18_2376 putative periplasmic aliphatic sulfonate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D PAM18_2731 putative ABC transporter, periplasmic binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D PAM18_2744 hypothetical protein K15553 ssuA; sulfonate transport system substrate-binding protein D PAM18_1517 putative permease of ABC transporter K15554 ssuC; sulfonate transport system permease protein D PAM18_1522 putative permease of ABC transporter K15554 ssuC; sulfonate transport system permease protein D PAM18_0185 putative permease of ABC transporter K15554 ssuC; sulfonate transport system permease protein D PAM18_2733 putative permease of ABC transporter K15554 ssuC; sulfonate transport system permease protein D PAM18_2745 putative permease of ABC transporter K15554 ssuC; sulfonate transport system permease protein D PAM18_0184 putative ATP-binding component of ABC transporter K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D PAM18_1518 putative ATP-binding component of ABC transporter K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D PAM18_1523 ssuB; aliphatic sulfonates transport ATP-binding subunit K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D PAM18_2732 putative ATP-binding component of ABC transporter K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D PAM18_2746 putative ATP-binding component of ABC transporter K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D PAM18_3179 modA; molybdate-binding periplasmic protein precursor ModA K02020 modA; molybdate transport system substrate-binding protein D PAM18_3180 modB; molybdenum transport protein ModB K02018 modB; molybdate transport system permease protein D PAM18_3181 modC; molybdenum transport protein ModC K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D PAM18_4793 hitA; ferric iron-binding periplasmic protein HitA K02012 afuA; iron(III) transport system substrate-binding protein D PAM18_5335 putative binding protein component of ABC iron transporter K02012 afuA; iron(III) transport system substrate-binding protein D PAM18_4794 hitB; putative iron ABC transporter, permease protein K02011 afuB; iron(III) transport system permease protein D PAM18_5334 putative permease of ABC iron transporter K02011 afuB; iron(III) transport system permease protein D PAM18_1448 putative ATP-binding component of ABC transporter K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D PAM18_0319 putative binding protein component of ABC transporter K11069 potD; spermidine/putrescine transport system substrate-binding protein D PAM18_1375 potD; polyamine transport protein PotD K11069 potD; spermidine/putrescine transport system substrate-binding protein D PAM18_0320 putative permease of ABC transporter K11070 potC; spermidine/putrescine transport system permease protein D PAM18_1376 potC; polyamine transport protein PotC K11070 potC; spermidine/putrescine transport system permease protein D PAM18_0321 putative permease of ABC transporter K11071 potB; spermidine/putrescine transport system permease protein D PAM18_1377 potB; polyamine transport protein PotB K11071 potB; spermidine/putrescine transport system permease protein D PAM18_0322 putative ATP-binding component of ABC transporter K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D PAM18_1378 potA; polyamine transport protein PotA K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D PAM18_3721 putative periplasmic spermidine/putrescine-binding protein K11073 potF; putrescine transport system substrate-binding protein D PAM18_0290 putative periplasmic polyamine binding protein K11073 potF; putrescine transport system substrate-binding protein D PAM18_0295 spuD; polyamine transport protein K11073 potF; putrescine transport system substrate-binding protein D PAM18_0296 spuE; polyamine transport protein K11073 potF; putrescine transport system substrate-binding protein D PAM18_2401 putative periplasmic spermidine/putrescine-binding protein K11073 potF; putrescine transport system substrate-binding protein D PAM18_2261 putative periplasmic spermidine/putrescine-binding protein K11073 potF; putrescine transport system substrate-binding protein D PAM18_0299 spuH; polyamine transport protein PotI K11074 potI; putrescine transport system permease protein D PAM18_0298 spuG; polyamine transport protein PotH K11075 potH; putrescine transport system permease protein D PAM18_0297 spuF; polyamine transport protein PotG K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16] D PAM18_0030 putative glycine betaine/L-proline ABC transporter, periplasmic substrate-binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein D PAM18_1735 putative glycine betaine-binding protein precursor K02002 proX; glycine betaine/proline transport system substrate-binding protein D PAM18_5498 putative glycine betaine/L-proline ABC transporter, periplasmic component K02002 proX; glycine betaine/proline transport system substrate-binding protein D PAM18_5508 putative glycine betaine/L-proline ABC transporter, periplasmic substrate-binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein D PAM18_5210 putative binding protein component of ABC transporter K02002 proX; glycine betaine/proline transport system substrate-binding protein D PAM18_5217 putative ABC transporter, periplasmic substrate-binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein D PAM18_5497 putative permease of ABC transporter K02001 proW; glycine betaine/proline transport system permease protein D PAM18_5209 putative permease of ABC transporter K02001 proW; glycine betaine/proline transport system permease protein D PAM18_5496 putative ATP-binding component of ABC transporter K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D PAM18_5208 putative ATP-binding component of ABC transporter K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D PAM18_1052 putative binding protein component of ABC transporter K05845 opuC; osmoprotectant transport system substrate-binding protein D PAM18_1051 putative permease of ABC transporter K05846 opuBD; osmoprotectant transport system permease protein D PAM18_1053 putative permease of ABC transporter K05846 opuBD; osmoprotectant transport system permease protein D PAM18_1050 putative ATP-binding component of ABC transporter K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D PAM18_2700 putative ATP-binding component of ABC maltose/mannitol transporter K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D PAM18_1785 putative ATP-binding component of ABC transporter K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D PAM18_2703 putative binding protein component of ABC maltose/mannitol transporter K10227 smoE; polyol transport system substrate-binding protein D PAM18_2702 putative binding-protein-dependent maltose/mannitol transport protein K10228 smoF; polyol transport system permease protein D PAM18_2701 putative binding-protein-dependent maltose/mannitol transport protein K10229 smoG; polyol transport system permease protein D PAM18_4544 putative toluene tolerance protein K07323 mlaC; phospholipid transport system substrate-binding protein D PAM18_4545 hypothetical protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D PAM18_1758 ABC-type transporter, periplasmic component K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D PAM18_4546 putative permease of ABC transporter K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D PAM18_1760 putative permease of ABC transporter K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D PAM18_4543 hypothetical protein K07122 mlaB; phospholipid transport system transporter-binding protein D PAM18_4547 putative ATP-binding component of ABC transporter K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D PAM18_1759 putative ATP-binding component of ABC transporter K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D PAM18_0147 putative basic membrane protein (bmp) K07335 bmpA; basic membrane protein A and related proteins D PAM18_0138 putative permease of ABC transporter K23535 nupB; general nucleoside transport system permease protein D PAM18_0139 putative permease of ABC transporter K23536 nupC; general nucleoside transport system permease protein D PAM18_0137 putative ATP-binding component of ABC transporter K23537 nupA; general nucleoside transport system ATP-binding protein D PAM18_1782 putative binding protein component of ABC sugar transporter K17315 gtsA; glucose/mannose transport system substrate-binding protein D PAM18_1783 putative permease of ABC sugar transporter K17316 gtsB; glucose/mannose transport system permease protein D PAM18_1784 putative permease of ABC sugar transporter K17317 gtsC; glucose/mannose transport system permease protein D PAM18_3099 rbsB; binding protein component precursor of ABC ribose transporter K10439 rbsB; ribose transport system substrate-binding protein D PAM18_3097 rbsC; membrane protein component of ABC ribose transporter K10440 rbsC; ribose transport system permease protein D PAM18_3098 rbsA; ribose transport protein RbsA K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D PAM18_2490 putative ABC-type periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D PAM18_5489 pstS; phosphate ABC transporter, periplasmic phosphate-binding protein, PstS K02040 pstS; phosphate transport system substrate-binding protein D PAM18_5488 pstC; membrane protein component of ABC phosphate transporter K02037 pstC; phosphate transport system permease protein D PAM18_5487 pstA; membrane protein component of ABC phosphate transporter K02038 pstA; phosphate transport system permease protein D PAM18_5486 pstB; ATP-binding component of ABC phosphate transporter K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D PAM18_1652 putative ABC-type phosphate/phosphonate transport system, periplasmic component K02044 phnD; phosphonate transport system substrate-binding protein D PAM18_1584 binding protein component of ABC phosphonate transporter K02044 phnD; phosphonate transport system substrate-binding protein D PAM18_1649 putative permease of ABC transporter K02042 phnE; phosphonate transport system permease protein D PAM18_1650 putative permease of ABC transporter K02042 phnE; phosphonate transport system permease protein D PAM18_1585 phnE; phosphonate transport protein PhnE K02042 phnE; phosphonate transport system permease protein D PAM18_1651 putative ATP-binding component of ABC transporter K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D PAM18_1583 phnC; ATP-binding component of ABC phosphonate transporter K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D PAM18_2037 hisM; histidine transport system permease HisM K10015 hisM; histidine transport system permease protein D PAM18_2038 hisQ; histidine transport system permease HisQ K10016 hisQ; histidine transport system permease protein D PAM18_2036 hisP; histidine transport protein HisP K10017 hisP; histidine transport system ATP-binding protein [EC:7.4.2.1] D PAM18_2039 hisJ; periplasmic histidine-binding protein HisJ K10014 hisJ; histidine transport system substrate-binding protein D PAM18_3560 putative binding protein component of ABC transporter K10001 gltI; glutamate/aspartate transport system substrate-binding protein D PAM18_3562 putative permease of ABC transporter K10002 gltK; glutamate/aspartate transport system permease protein D PAM18_3561 putative permease of ABC transporter K10003 gltJ; glutamate/aspartate transport system permease protein D PAM18_3563 putative ATP-binding component of ABC transporter K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1] D PAM18_1080 putative amino acid-binding protein K09969 aapJ; general L-amino acid transport system substrate-binding protein D PAM18_0310 putative binding protein component of ABC transporter K02424 tcyA; L-cystine transport system substrate-binding protein D PAM18_0309 putative permease of ABC transporter K10009 tcyB; L-cystine transport system permease protein D PAM18_4151 aotJ; arginine/ornithine binding protein AotJ K10022 aotJ; arginine/ornithine transport system substrate-binding protein D PAM18_1073 putative amino acid binding protein K10022 aotJ; arginine/ornithine transport system substrate-binding protein D PAM18_4149 aotM; arginine/ornithine transport protein AotM K10023 aotM; arginine/ornithine transport system permease protein D PAM18_4150 aotQ; arginine/ornithine transport protein AotQ K10024 aotQ; arginine/ornithine transport system permease protein D PAM18_4147 aotP; arginine/ornithine transport protein AotP K10025 aotP; arginine/ornithine transport system ATP-binding protein [EC:7.4.2.1] D PAM18_5269 putative periplasmic binding protein K23055 K23055; putative lysine/arginine/ornithine/histidine/octopine transport system substrate-binding protein D PAM18_5270 putative permease of ABC transporter K23056 K23056; putative lysine/arginine/ornithine/histidine/octopine transport system permease protein D PAM18_5271 putative permease of ABC transporter K23057 K23057; putative lysine/arginine/ornithine/histidine/octopine transport system permease protein D PAM18_5268 putative ATP-binding component of ABC transporter K23058 K23058; putative lysine/arginine/ornithine/histidine/octopine transport system ATP-binding protein [EC:7.4.2.1] D PAM18_3771 putative binding protein component of ABC transporter K23061 lhpP; hydroxyproline transporter system substrate-binding protein D PAM18_3773 putative permease of ABC transporter K23062 lhpM; hydroxyproline transport system permease protein D PAM18_3774 putative permease of ABC transporter K23063 lhpN; hydroxyproline transport system permease protein D PAM18_3775 putative ATP-binding component of ABC transporter K23064 lhpO; hydroxyproline transport system ATP-binding protein [EC:7.4.2.1] D PAM18_3970 braC; branched-chain amino acid transport protein BraC K01999 livK; branched-chain amino acid transport system substrate-binding protein D PAM18_1601 amiC; aliphatic amidase expression-regulating protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D PAM18_5024 putative binding protein component of ABC transporter K01999 livK; branched-chain amino acid transport system substrate-binding protein D PAM18_3971 braD; branched-chain amino acid transport protein BraD K01997 livH; branched-chain amino acid transport system permease protein D PAM18_5023 putative permease of ABC branched chain amino acid transporter K01997 livH; branched-chain amino acid transport system permease protein D PAM18_3972 livM; leucine/isoleucine/valine transporter permease subunit K01998 livM; branched-chain amino acid transport system permease protein D PAM18_5022 putative permease of ABC branched-chain amino acid transporter K01998 livM; branched-chain amino acid transport system permease protein D PAM18_3973 livG; leucine/isoleucine/valine transporter ATP-binding subunit K01995 livG; branched-chain amino acid transport system ATP-binding protein D PAM18_5021 putative ATP-binding component of ABC transporter K01995 livG; branched-chain amino acid transport system ATP-binding protein D PAM18_3974 braG; branched-chain amino acid transport protein BraG K01996 livF; branched-chain amino acid transport system ATP-binding protein D PAM18_5020 putative ATP-binding component of ABC transporter K01996 livF; branched-chain amino acid transport system ATP-binding protein D PAM18_2692 putative ABC transporter, periplasmic binding protein K02073 metQ; D-methionine transport system substrate-binding protein D PAM18_1009 hypothetical protein K02073 metQ; D-methionine transport system substrate-binding protein D PAM18_5626 putative TonB-dependent receptor K02073 metQ; D-methionine transport system substrate-binding protein D PAM18_2690 putative permease of ABC transporter K02072 metI; D-methionine transport system permease protein D PAM18_5625 putative permease of ABC transporter K02072 metI; D-methionine transport system permease protein D PAM18_2691 putative ATP-binding component of ABC transporter K02071 metN; D-methionine transport system ATP-binding protein D PAM18_5624 putative ATP-binding component of ABC transporter K02071 metN; D-methionine transport system ATP-binding protein D PAM18_4970 putative branched-chain amino acid ABC transporter, periplasmic component K11959 urtA; urea transport system substrate-binding protein D PAM18_4971 putative permease of ABC transporter K11960 urtB; urea transport system permease protein D PAM18_4972 putative permease of ABC transporter K11961 urtC; urea transport system permease protein D PAM18_4973 putative ATP-binding component of ABC transporter K11962 urtD; urea transport system ATP-binding protein D PAM18_4974 putative ATP-binding component of ABC transporter K11963 urtE; urea transport system ATP-binding protein D PAM18_4587 putative binding protein component of ABC transporter K12368 dppA; dipeptide transport system substrate-binding protein D PAM18_4588 putative binding protein component of ABC transporter K12368 dppA; dipeptide transport system substrate-binding protein D PAM18_4591 putative binding protein component of ABC transporter K12368 dppA; dipeptide transport system substrate-binding protein D PAM18_4593 putative binding protein component of ABC transporter K12368 dppA; dipeptide transport system substrate-binding protein D PAM18_5437 putative binding protein component of ABC dipeptide transporter K12368 dppA; dipeptide transport system substrate-binding protein D PAM18_4594 putative permease of ABC transporter K12369 dppB; dipeptide transport system permease protein D PAM18_4595 putative permease of ABC transporter K12370 dppC; dipeptide transport system permease protein D PAM18_4596 putative ATP-binding component of ABC transporter K12371 dppD; dipeptide transport system ATP-binding protein D PAM18_4597 dppF; dipeptide transporter ATP-binding subunit K12372 dppF; dipeptide transport system ATP-binding protein D PAM18_2986 putative binding protein component of ABC transporter K13893 yejA; microcin C transport system substrate-binding protein D PAM18_3233 putative solute-binding protein K13893 yejA; microcin C transport system substrate-binding protein D PAM18_3234 putative binding protein component of ABC transporter K13893 yejA; microcin C transport system substrate-binding protein D PAM18_2985 putative permease of ABC transporter K13894 yejB; microcin C transport system permease protein D PAM18_3235 putative permease of ABC transporter K13894 yejB; microcin C transport system permease protein D PAM18_2984 putative permease of ABC transporter K13895 yejE; microcin C transport system permease protein D PAM18_3236 putative permease of ABC transporter K13895 yejE; microcin C transport system permease protein D PAM18_2983 putative ATP-binding component of ABC transporter K13896 yejF; microcin C transport system ATP-binding protein D PAM18_3237 putative ATP-binding component of ABC transporter K13896 yejF; microcin C transport system ATP-binding protein D PAM18_0778 fepB; iron-enterobactin transporter periplasmic binding protein K23185 fepB; ferric enterobactin transport system substrate-binding protein D PAM18_0777 fepD; ferric enterobactin transport protein FepD K23186 fepD; iron-siderophore transport system permease protein D PAM18_0776 fepG; ferric enterobactin transport protein FepG K23187 fepG; iron-siderophore transport system permease protein D PAM18_0779 fepC; ferric enterobactin transport protein FepC K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-] D PAM18_0895 putative ABC transporter K06858 btuF; vitamin B12 transport system substrate-binding protein D PAM18_2635 putative adhesion protein K09815 znuA; zinc transport system substrate-binding protein D PAM18_5619 putative adhesin K09815 znuA; zinc transport system substrate-binding protein D PAM18_2633 putative permease of ABC transporter K09816 znuB; zinc transport system permease protein D PAM18_5622 znuB; permease of ABC zinc transporter ZnuB K09816 znuB; zinc transport system permease protein D PAM18_2634 putative ATP-binding component of ABC transporter K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D PAM18_5621 znuC; zinc transport protein ZnuC K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D PAM18_2295 putative permease of ABC-2 transporter K09690 wzm; homopolymeric O-antigen transport system permease protein D PAM18_5573 wzm; membrane subunit of A-band LPS efflux transporter K09690 wzm; homopolymeric O-antigen transport system permease protein D PAM18_5572 wzt; ABC subunit of A-band LPS efflux transporter K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14] D PAM18_1973 putative lipoprotein releasing system, permease protein K09808 lolC_E; lipoprotein-releasing system permease protein D PAM18_1975 putative lipoprotein releasing system, permease protein K09808 lolC_E; lipoprotein-releasing system permease protein D PAM18_1974 putative ATP-binding component of ABC transporter K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D PAM18_3654 putative heme exporter protein K02196 ccmD; heme exporter protein D D PAM18_3655 ccmC; heme exporter protein CcmC K02195 ccmC; heme exporter protein C D PAM18_3656 ccmB; heme exporter protein CcmB K02194 ccmB; heme exporter protein B D PAM18_3657 ccmA; cytochrome c biogenesis protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D PAM18_1110 putative permease K07091 lptF; lipopolysaccharide export system permease protein D PAM18_1111 putative permease K11720 lptG; lipopolysaccharide export system permease protein D PAM18_4552 putative ATP-binding component of ABC transporter K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D PAM18_1572 nosY; NosY protein K19341 nosY; Cu-processing system permease protein D PAM18_1573 nosF; NosF protein K19340 nosF; Cu-processing system ATP-binding protein D PAM18_0374 ftsX; cell division protein FtsX K09811 ftsX; cell division transport system permease protein D PAM18_0373 ftsE; cell division protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D PAM18_5111 msbA; transport protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D PAM18_0794 putative toxin transporter K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB D PAM18_1743 putative ATP-binding/permease fusion ABC transporter K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump D PAM18_3165 putative ATP-binding/permease fusion ABC transporter K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB D PAM18_1560 hasD; transport protein HasD K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D PAM18_3785 aprD; alkaline protease secretion protein AprD K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D PAM18_2651 putative ATP-binding/permease fusion ABC transporter K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-] D PAM18_2644 pvdE; pyoverdine biosynthesis protein PvdE K06160 pvdE; putative pyoverdin transport system ATP-binding/permease protein C 02060 Phosphotransferase system (PTS) [PATH:paf02060] D PAM18_1184 putative phosphotransferase system protein K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D PAM18_1424 putative phosphotransferase system enzyme I K23993 fruB; multiphosphoryl transfer protein [EC:2.7.3.9 2.7.1.202] D PAM18_1185 putative phosphotransferase protein K23993 fruB; multiphosphoryl transfer protein [EC:2.7.3.9 2.7.1.202] D PAM18_1426 fruA; phosphotransferase system, fructose-specific IIBC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D PAM18_1425 fruK; 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] D PAM18_0335 ptsP; phosphoenolpyruvate-protein phosphotransferase PtsP K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9] D PAM18_4557 tryptophanyl-tRNA synthetase K08485 ptsO; phosphocarrier protein NPr D PAM18_4555 ptsN; nitrogen regulatory IIA protein K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] C 03070 Bacterial secretion system [PATH:paf03070] D PAM18_0793 putative outer membrane protein precursor K12340 tolC; outer membrane protein D PAM18_5085 putative outer membrane protein precursor K12340 tolC; outer membrane protein D PAM18_4685 putative outer membrane protein precursor K12340 tolC; outer membrane protein D PAM18_3327 pscF; type III export protein PscF K03221 yscF; type III secretion protein F D PAM18_3350 pscO; translocation protein in type III secretion K04056 yscO; type III secretion protein O D PAM18_3351 pscP; translocation protein in type III secretion K04057 yscP; type III secretion protein P D PAM18_3345 hypothetical protein in type III secretion K04059 yscX; type III secretion protein X D PAM18_3330 pscC; Type III secretion outer membrane protein PscC precursor K03219 yscC; type III secretion protein C D PAM18_3348 popN; Type III secretion outer membrane protein PopN precursor K04058 yscW; type III secretion protein W D PAM18_3323 pscJ; type III export protein PscJ K03222 yscJ; type III secretion protein J D PAM18_3353 pscR; type III secretion system protein K03226 yscR; type III secretion protein R D PAM18_3354 putative translocation protein in type III secretion K03227 yscS; type III secretion protein S D PAM18_3355 pscT; translocation protein in type III secretion K03228 yscT; type III secretion protein T D PAM18_3356 pscU; translocation protein in type III secretion K03229 yscU; type III secretion protein U D PAM18_3343 pcrD; type III secretory apparatus protein PcrD K03230 yscV; type III secretion protein V D PAM18_3349 type III secretion system ATPase K03224 yscN; ATP synthase in type III secretion protein N [EC:7.4.2.8] D PAM18_3352 pscQ; type III secretion system protein K03225 yscQ; type III secretion protein Q D PAM18_3321 pscL; type III secretion system protein K03223 yscL; type III secretion protein L D PAM18_4353 putative type II secretion system protein K02453 gspD; general secretion pathway protein D D PAM18_3173 xqhA; secretion protein XqhA K02453 gspD; general secretion pathway protein D D PAM18_1858 xcpQ; general secretion pathway protein D K02453 gspD; general secretion pathway protein D D PAM18_4359 hypothetical protein K02452 gspC; general secretion pathway protein C D PAM18_3174 xphA; XphA K02452 gspC; general secretion pathway protein C D PAM18_1859 xcpP; secretion protein XcpP K02452 gspC; general secretion pathway protein C D PAM18_4351 putative type II secretion system protein K02455 gspF; general secretion pathway protein F D PAM18_1861 xcpS; general secretion pathway protein F K02455 gspF; general secretion pathway protein F D PAM18_2297 putative type II secretion system protein K02455 gspF; general secretion pathway protein F D PAM18_4357 HxcT pseudopilin K02456 gspG; general secretion pathway protein G D PAM18_2298 putative type II secretion system protein K02456 gspG; general secretion pathway protein G D PAM18_2299 putative type II secretion system protein K02456 gspG; general secretion pathway protein G D PAM18_1862 xcpT; general secretion pathway protein G K02456 gspG; general secretion pathway protein G D PAM18_4360 HxcU putative pseudopilin K02457 gspH; general secretion pathway protein H D PAM18_1863 xcpU; General secretion pathway outer membrane protein H precursor K02457 gspH; general secretion pathway protein H D PAM18_4358 HxcV putative pseudopilin K02458 gspI; general secretion pathway protein I D PAM18_2300 putative type II secretion system protein K02458 gspI; general secretion pathway protein I D PAM18_1864 xcpV; general secretion pathway protein I K02458 gspI; general secretion pathway protein I D PAM18_4361 HxcW putative pseudopilin K02459 gspJ; general secretion pathway protein J D PAM18_2301 putative type II secretion system protein K02459 gspJ; general secretion pathway protein J D PAM18_1865 xcpW; general secretion pathway protein J K02459 gspJ; general secretion pathway protein J D PAM18_4356 HxcX atypical pseudopilin K02460 gspK; general secretion pathway protein K D PAM18_1866 xcpX; general secretion pathway protein K K02460 gspK; general secretion pathway protein K D PAM18_4355 type II secretion system protein K02461 gspL; general secretion pathway protein L D PAM18_1867 xcpY; general secretion pathway protein L K02461 gspL; general secretion pathway protein L D PAM18_4354 putative type II secretion system protein K02462 gspM; general secretion pathway protein M D PAM18_1868 xcpZ; general secretion pathway protein M K02462 gspM; general secretion pathway protein M D PAM18_4352 putative type II secretion system protein K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D PAM18_1860 xcpR; general secretion pathway protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D PAM18_5328 putative secretion pathway ATPase K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D PAM18_1117 secD; preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D PAM18_1118 secF; preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D PAM18_0654 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D PAM18_4855 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D PAM18_0687 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D PAM18_1116 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D PAM18_5696 putative inner membrane protein translocase component YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D PAM18_4494 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D PAM18_0372 ftsY; signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor D PAM18_5242 secB; preprotein translocase subunit SecB K03071 secB; preprotein translocase subunit SecB D PAM18_1199 ffh; signal recognition particle protein Ffh K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D PAM18_5183 tatA; twin arginine translocase protein A K03116 tatA; sec-independent protein translocase protein TatA D PAM18_5184 tatB; sec-independent translocase K03117 tatB; sec-independent protein translocase protein TatB D PAM18_5185 tatC; transport protein TatC K03118 tatC; sec-independent protein translocase protein TatC D PAM18_5204 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG D PAM18_3620 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG D PAM18_0257 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG D PAM18_1674 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG D PAM18_5386 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG D PAM18_0097 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG D PAM18_0093 vgrG1; VgrG1 K11904 vgrG; type VI secretion system secreted protein VgrG D PAM18_2287 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG D PAM18_2668 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG D PAM18_2674 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp D PAM18_3619 hcpB; secreted protein Hcp K11903 hcp; type VI secretion system secreted protein Hcp D PAM18_0258 hcpB; secreted protein Hcp K11903 hcp; type VI secretion system secreted protein Hcp D PAM18_0087 hcp1; Hcp1 K11903 hcp; type VI secretion system secreted protein Hcp D PAM18_5387 hcpB; secreted protein Hcp K11903 hcp; type VI secretion system secreted protein Hcp D PAM18_3381 putative lipoprotein K11906 vasD; type VI secretion system protein VasD D PAM18_0082 hypothetical protein K11906 vasD; type VI secretion system protein VasD D PAM18_2680 hypothetical protein K11891 impL; type VI secretion system protein ImpL D PAM18_3378 hypothetical protein K11891 impL; type VI secretion system protein ImpL D PAM18_0079 icmF1; IcmF1 K11891 impL; type VI secretion system protein ImpL D PAM18_2679 hypothetical protein K11892 impK; type VI secretion system protein ImpK D PAM18_3379 putative outer membrane protein K11892 impK; type VI secretion system protein ImpK D PAM18_0080 hypothetical protein K11892 impK; type VI secretion system protein ImpK D PAM18_2670 putative ClpA/B-type protease K11907 vasG; type VI secretion system protein VasG D PAM18_3384 putative ClpA/B-type protease K11907 vasG; type VI secretion system protein VasG D PAM18_0092 clpV1; ClpV1 K11907 vasG; type VI secretion system protein VasG D PAM18_0083 fha1; Fha1 K11913 fha1; type VI secretion system protein D PAM18_3377 stp1; serine/threonine phosphoprotein phosphatase Stp1 K11915 stp1; serine/threonine protein phosphatase Stp1 [EC:3.1.3.16] D PAM18_0077 pppA; PppA K11915 stp1; serine/threonine protein phosphatase Stp1 [EC:3.1.3.16] B B 09132 Signal transduction C 02020 Two-component system [PATH:paf02020] D PAM18_5481 phoR; two-component sensor PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D PAM18_5480 phoB; two-component response regulator PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D PAM18_1672 phoA; alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D PAM18_1030 putative phosphatase or phosphodiesterase K01113 phoD; alkaline phosphatase D [EC:3.1.3.1] D PAM18_2490 putative ABC-type periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D PAM18_5489 pstS; phosphate ABC transporter, periplasmic phosphate-binding protein, PstS K02040 pstS; phosphate transport system substrate-binding protein D PAM18_3853 phoQ; two-component sensor PhoQ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D PAM18_3854 phoP; two-component response regulator PhoP K07660 phoP; two-component system, OmpR family, response regulator PhoP D PAM18_2942 hypothetical protein K07790 pagO; putative membrane protein PagO D PAM18_0190 putative acid phosphatase K09474 phoN; acid phosphatase (class A) [EC:3.1.3.2] D PAM18_5318 envZ; two-component sensor EnvZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D PAM18_5319 ompR; osmolarity response regulator K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D PAM18_1767 putative two-component response regulator K07662 cpxR; two-component system, OmpR family, response regulator CpxR D PAM18_3875 putative two-component sensor K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3] D PAM18_3876 putative two-component response regulator K07661 rstA; two-component system, OmpR family, response regulator RstA D PAM18_4272 mucD; serine protease MucD precursor K04771 degP; serine protease Do [EC:3.4.21.107] D PAM18_0463 creC; sensory histidine kinase CreC K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3] D PAM18_0462 creB; DNA-binding response regulator CreB K07663 creB; two-component system, OmpR family, catabolic regulation response regulator CreB D PAM18_2510 putative Resistance-Nodulation-Cell Division (RND) efflux membrane fusion protein precursor K07799 mdtA; membrane fusion protein, multidrug efflux system D PAM18_2511 putative Resistance-Nodulation-Cell Division (RND) efflux transporter K07788 mdtB; multidrug efflux pump D PAM18_2512 putative Resistance-Nodulation-Cell Division (RND) efflux transporter K07789 mdtC; multidrug efflux pump D PAM18_1434 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87] D PAM18_3693 putative two-component sensor K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D PAM18_2153 copS; two-component sensor, CopS K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D PAM18_2515 putative two-component sensor K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D PAM18_4998 putative two-component sensor K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D PAM18_3694 putative two-component response regulator K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D PAM18_2516 putative two-component response regulator K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D PAM18_4997 irlR; two-component response regulator K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D PAM18_2154 copR; two-component response regulator, CopR K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D PAM18_4885 pmrB; PmrB: two-component regulator system signal sensor kinase PmrB K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3] D PAM18_2559 putative two-component sensor K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3] D PAM18_4884 pmrA; PmrA: two-component regulator system response regulator PmrA K07666 qseB; two-component system, OmpR family, response regulator QseB D PAM18_2560 putative two-component response regulator K07666 qseB; two-component system, OmpR family, response regulator QseB D PAM18_3943 fliC; flagellin type B K02406 fliC; flagellin D PAM18_3676 fliA; flagellar biosynthesis sigma factor K02405 fliA; RNA polymerase sigma factor FliA D PAM18_3671 motC; flagellar motor protein K02556 motA; chemotaxis protein MotA D PAM18_5065 motA; flagellar motor protein MotA K02556 motA; chemotaxis protein MotA D PAM18_3411 kdpD; two-component sensor KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D PAM18_3410 kdpE; two-component response regulator KdpE K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D PAM18_3414 kdpA; potassium-transporting ATPase subunit A K01546 kdpA; potassium-transporting ATPase potassium-binding subunit D PAM18_3413 kdpB; potassium-transporting ATPase subunit B K01547 kdpB; potassium-transporting ATPase ATP-binding subunit [EC:7.2.2.6] D PAM18_3412 kdpC; potassium-transporting ATPase subunit C K01548 kdpC; potassium-transporting ATPase KdpC subunit D PAM18_4282 putative two-component sensor K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D PAM18_4283 putative two-component response regulator K07774 tctD; two-component system, OmpR family, response regulator TctD D PAM18_4287 hypothetical protein K07793 tctA; putative tricarboxylic transport membrane protein D PAM18_2828 putative integral membrane protein K07793 tctA; putative tricarboxylic transport membrane protein D PAM18_4286 hypothetical protein K07794 tctB; putative tricarboxylic transport membrane protein D PAM18_2827 hypothetical protein K07794 tctB; putative tricarboxylic transport membrane protein D PAM18_4285 hypothetical protein K07795 tctC; putative tricarboxylic transport membrane protein D PAM18_2826 hypothetical protein K07795 tctC; putative tricarboxylic transport membrane protein D PAM18_0114 putative cytochrome oxidase assembly protein K02259 COX15; heme a synthase [EC:1.17.99.9] D PAM18_0001 dnaA; chromosomal replication initiation protein K02313 dnaA; chromosomal replication initiator protein D PAM18_4119 hypothetical protein K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3] D PAM18_3246 putative two-component sensor K18072 parS; two-component system, OmpR family, sensor kinase ParS [EC:2.7.13.3] D PAM18_3245 putative two-component response regulator K18073 parR; two-component system, OmpR family, response regulator ParR D PAM18_4079 oprD; Basic amino acid, basic peptide and imipenem outer membrane porin OprD precursor K18093 oprD; imipenem/basic amino acid-specific outer membrane pore [EC:3.4.21.-] D PAM18_0189 putative porin K18093 oprD; imipenem/basic amino acid-specific outer membrane pore [EC:3.4.21.-] D PAM18_2272 opdB; proline porin OpdB K18093 oprD; imipenem/basic amino acid-specific outer membrane pore [EC:3.4.21.-] D PAM18_3025 periplasmic multidrug efflux lipoprotein precursor K18094 mexX; membrane fusion protein, multidrug efflux system D PAM18_3026 multidrug efflux protein K18095 mexY; multidrug efflux pump D PAM18_1157 hypothetical protein K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D PAM18_4290 hypothetical protein K18346 vanW; vancomycin resistance protein VanW D PAM18_2285 pfeS; two-component sensor PfeS K19609 pfeS; two-component system, OmpR family, sensor histidine kinase PfeS [EC:2.7.13.3] D PAM18_4109 two-component sensor K19609 pfeS; two-component system, OmpR family, sensor histidine kinase PfeS [EC:2.7.13.3] D PAM18_4110 two-component response regulator K19610 pfeR; two-component system, OmpR family, response regulator PfeR D PAM18_2286 pfeR; two-component response regulator PfeR K19610 pfeR; two-component system, OmpR family, response regulator PfeR D PAM18_4108 pirA; outer membrane receptor FepA K19611 fepA; ferric enterobactin receptor D PAM18_2284 pfeA; outer membrane receptor FepA K19611 fepA; ferric enterobactin receptor D PAM18_1494 malate dehydrogenase K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D PAM18_5382 algZ; alginate biosynthesis protein AlgZ/FimS K08082 algZ; two-component system, LytTR family, sensor histidine kinase AlgZ [EC:2.7.13.3] D PAM18_5381 algR; alginate biosynthesis regulatory protein AlgR K08083 algR; two-component system, LytTR family, response regulator AlgR D PAM18_1446 algD; GDP-mannose 6-dehydrogenase AlgD K00066 algD; GDP-mannose 6-dehydrogenase [EC:1.1.1.132] D PAM18_1064 narX; two-component sensor NarX K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3] D PAM18_1063 narL; transcriptional regulator NarL K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL D PAM18_2665 putative transcriptional regulator K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL D PAM18_1067 narG; respiratory nitrate reductase alpha chain K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-] D PAM18_1068 narH; respiratory nitrate reductase beta chain K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-] D PAM18_1070 narI; respiratory nitrate reductase gamma chain K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-] D PAM18_1069 narJ; respiratory nitrate reductase delta chain K00373 narJ; nitrate reductase molybdenum cofactor assembly chaperone NarJ/NarW D PAM18_0860 putative response regulator K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB D PAM18_1232 putative two-component response regulator K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB D PAM18_2063 putative transcriptional regulator K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB D PAM18_4111 gacS; sensor/response regulator hybrid K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3] D PAM18_2407 gacA; response regulator GacA K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY D PAM18_2435 regulatory protein K03563 csrA; carbon storage regulator D PAM18_4134 rsmA; carbon storage regulator K03563 csrA; carbon storage regulator D PAM18_0994 putative two-component sensor K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3] D PAM18_2410 putative sensor/response regulator hybrid K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3] D PAM18_1915 putative two-component response regulator K07690 evgA; two-component system, NarL family, response regulator EvgA D PAM18_0035 putative two-component response regulator K07690 evgA; two-component system, NarL family, response regulator EvgA D PAM18_0992 rocA1; two-component response regulator RocA1 K07690 evgA; two-component system, NarL family, response regulator EvgA D PAM18_4382 pprA; two-component sensor PprA K27076 pprA; two-component system, NarL family, sensor histidine kinase PprA [EC:2.7.13.3] D PAM18_4385 pprB; two-component response regulator, PprB K27077 pprB; two-component system, NarL family, response regulator PprB D PAM18_4745 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D PAM18_4746 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D PAM18_4750 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D PAM18_4747 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D PAM18_2912 cupA2; chaperone CupA2 K07346 fimC; fimbrial chaperone protein D PAM18_4748 putative pili assembly chaperone K07346 fimC; fimbrial chaperone protein D PAM18_2911 cupA3; usher CupA3 K07347 fimD; outer membrane usher protein D PAM18_4054 cupC3; usher CupC3 K07347 fimD; outer membrane usher protein D PAM18_0856 cupB3; usher CupB3 K07347 fimD; outer membrane usher protein D PAM18_4749 putative type 1 pili usher protein CsuD K07347 fimD; outer membrane usher protein D PAM18_4395 flp; Type IVb pilin, Flp K02651 flp; pilus assembly protein Flp/PilA D PAM18_4394 rcpC; RcpC K02279 cpaB; pilus assembly protein CpaB D PAM18_4393 rcpA; RcpA K02280 cpaC; pilus assembly protein CpaC D PAM18_4392 tadZ; TadZ K02282 cpaE; pilus assembly protein CpaE D PAM18_4391 tadA; TadA ATPase K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D PAM18_4390 tadB; TadB K12510 tadB; tight adherence protein B D PAM18_4389 tadC; TadC K12511 tadC; tight adherence protein C D PAM18_4388 tadD; TadD K27079 tadD; tight adherence protein D D PAM18_4386 tadG; TadG K27080 tadG; tight adherence protein G D PAM18_1288 glnD; PII uridylyl-transferase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59] D PAM18_5238 ntrB; two-component sensor NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D PAM18_5239 ntrC; two-component response regulator NtrC K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG D PAM18_0291 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAM18_0293 spuB; putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAM18_1609 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAM18_3004 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAM18_3482 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAM18_5233 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAM18_5629 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAM18_5644 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAM18_4834 cbrB; two-component response regulator CbrB K07713 zraR; two-component system, NtrC family, response regulator HydG D PAM18_3043 putative short-chain fatty acid transporter K02106 atoE; short-chain fatty acids transporter D PAM18_3044 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_3310 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_1015 putative acyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_2485 putative acyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_4894 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_5633 putative two-component sensor K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D PAM18_5282 putative two-component sensor K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D PAM18_5283 putative two-component response regulator K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD D PAM18_5632 putative two-component response regulator K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD D PAM18_3850 dctA; C4-dicarboxylate transporter DctA K11103 dctA; aerobic C4-dicarboxylate transport protein D PAM18_0121 C4-dicarboxylate transporter DctA K11103 dctA; aerobic C4-dicarboxylate transport protein D PAM18_4639 pilS; two-component sensor PilS K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3] D PAM18_4640 pilR; two-component response regulator PilR K02667 pilR; two-component system, NtrC family, response regulator PilR D PAM18_4553 rpoN; RNA polymerase factor sigma-54 K03092 rpoN; RNA polymerase sigma-54 factor D PAM18_4617 pilA; type 4 fimbrial precursor PilA K02650 pilA; type IV pilus assembly protein PilA D PAM18_5605 putative two-component sensor K11383 kinB; two-component system, NtrC family, sensor histidine kinase KinB [EC:2.7.13.3] D PAM18_5604 algB; two-component response regulator AlgB K11384 algB; two-component system, NtrC family, response regulator AlgB D PAM18_0175 putative chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D PAM18_1617 putative chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D PAM18_0176 aer2; aerotaxis transducer Aer2 K03406 mcp; methyl-accepting chemotaxis protein D PAM18_0180 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein D PAM18_2476 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein D PAM18_2042 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein D PAM18_2320 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein D PAM18_2322 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein D PAM18_3109 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein D PAM18_3780 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein D PAM18_2420 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein D PAM18_3400 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein D PAM18_4380 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein D PAM18_4611 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein D PAM18_3439 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein D PAM18_3708 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein D PAM18_4396 pctC; chemotactic transducer PctC K03406 mcp; methyl-accepting chemotaxis protein D PAM18_4398 pctC; chemotactic transducer PctC K03406 mcp; methyl-accepting chemotaxis protein D PAM18_4399 pctC; chemotactic transducer PctC K03406 mcp; methyl-accepting chemotaxis protein D PAM18_4728 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein D PAM18_5026 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein D PAM18_5187 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein D PAM18_3487 aer; aerotaxis receptor Aer K03776 aer; aerotaxis receptor D PAM18_0177 putative purine-binding chemotaxis protein K03408 cheW; purine-binding chemotaxis protein CheW D PAM18_3667 putative purine-binding chemotaxis protein K03408 cheW; purine-binding chemotaxis protein CheW D PAM18_3668 putative CheW domain protein K03408 cheW; purine-binding chemotaxis protein CheW D PAM18_0178 putative two-component sensor K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D PAM18_3673 putative two-component sensor K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D PAM18_0179 putative two-component response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D PAM18_3675 cheY; two-component response regulator CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D PAM18_0173 chemotaxis-specific methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D PAM18_3672 chemotaxis-specific methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D PAM18_1616 putative chemotaxis protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D PAM18_0412 pilK; methyltransferase PilK K02661 pilK; type IV pilus assembly protein PilK D PAM18_0411 pilJ; twitching motility protein PilJ K02660 pilJ; twitching motility protein PilJ D PAM18_0410 pilI; twitching motility protein PilI K02659 pilI; twitching motility protein PilI D PAM18_0413 chpA; putative component of chemotactic signal transduction system K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator) D PAM18_0408 pilG; twitching motility protein PilG K02657 pilG; twitching motility two-component system response regulator PilG D PAM18_0409 pilH; twitching motility protein PilH K02658 pilH; twitching motility two-component system response regulator PilH D PAM18_0414 chpB; putative methylesterase K06597 chpB; chemosensory pili system protein ChpB (putative protein-glutamate methylesterase) D PAM18_0415 chpC; putative chemotaxis protein K06598 chpC; chemosensory pili system protein ChpC D PAM18_1240 wspC; putative protein methyltransferase K13486 wspC; chemotaxis protein methyltransferase WspC D PAM18_1238 wspA; putative chemotaxis transducer K13487 wspA; methyl-accepting chemotaxis protein WspA D PAM18_1239 wspB; hypothetical protein K13488 wspB; chemotaxis-related protein WspB D PAM18_1241 wspD; CheW domain protein K13489 wspD; chemotaxis-related protein WspD D PAM18_1242 putative chemotaxis sensor/effector fusion protein K13490 wspE; two-component system, chemotaxis family, sensor histidine kinase and response regulator WspE D PAM18_1243 wspF; chemotaxis-specific methylesterase K13491 wspF; two-component system, chemotaxis family, response regulator WspF [EC:3.1.1.61] D PAM18_1244 wspR; putative two-component response regulator K11444 wspR; two-component system, chemotaxis family, response regulator WspR [EC:2.7.7.65] D PAM18_4710 putative c4-dicarboxylate-binding protein K11688 dctP; C4-dicarboxylate-binding protein DctP D PAM18_4155 putative C4-dicarboxylate-binding periplasmic protein K11688 dctP; C4-dicarboxylate-binding protein DctP D PAM18_5284 putative c4-dicarboxylate-binding protein K11688 dctP; C4-dicarboxylate-binding protein DctP D PAM18_4154 putative C4-dicarboxylate transporter K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit D PAM18_5285 putative dicarboxylate transporter K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit D PAM18_5286 putative C4-dicarboxylate transporter K11690 dctM; C4-dicarboxylate transporter, DctM subunit D PAM18_4153 putative C4-dicarboxylate transporter K11690 dctM; C4-dicarboxylate transporter, DctM subunit D PAM18_0741 putative two-component response regulator K14987 fixJ; two-component system, LuxR family, response regulator FixJ D PAM18_3937 fleQ; transcriptional regulator FleQ K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D PAM18_3936 fleS; two-component sensor K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3] D PAM18_3935 fleR; two-component response regulator K10943 flrC; two-component system, response regulator FlrC D PAM18_3566 putative two-component sensor K17060 aauS; two-component system, sensor histidine kinase AauS [EC:2.7.13.3] D PAM18_3567 putative two-component response regulator K17061 aauR; two-component system, response regulator AauR D PAM18_3563 putative ATP-binding component of ABC transporter K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1] D PAM18_3562 putative permease of ABC transporter K10002 gltK; glutamate/aspartate transport system permease protein D PAM18_3561 putative permease of ABC transporter K10003 gltJ; glutamate/aspartate transport system permease protein D PAM18_3560 putative binding protein component of ABC transporter K10001 gltI; glutamate/aspartate transport system substrate-binding protein D PAM18_3565 ansB; glutaminase-asparaginase K05597 aspQ; glutamin-(asparagin-)ase [EC:3.5.1.38] D PAM18_0633 vfr; cAMP-regulatory protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D PAM18_0270 putative transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D PAM18_3409 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D PAM18_4585 putative two-component sensor K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] D PAM18_4584 putative two-component response regulator K15012 regA; two-component system, response regulator RegA D PAM18_4522 putative iron-sulfur protein K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D PAM18_4521 putative cytochrome b K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D PAM18_4520 putative cytochrome c1 precursor K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit D PAM18_0517 nirM; cytochrome c-551 precursor K08738 CYC; cytochrome c D PAM18_3186 putative cytochrome oxidase subunit K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9] D PAM18_3490 putative cytochrome oxidase subunit (cbb3-type) K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9] D PAM18_3494 putative cytochrome oxidase subunit (cbb3-type) K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9] D PAM18_0806 cytochrome c oxidase subunit (cbb3-type) K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9] D PAM18_3491 putative cytochrome c oxidase subunit K00405 ccoO; cytochrome c oxidase cbb3-type subunit II D PAM18_3495 putative cytochrome c oxidase subunit K00405 ccoO; cytochrome c oxidase cbb3-type subunit II D PAM18_3492 putative cytochrome c oxidase subunit K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV D PAM18_3496 putative cytochrome c oxidase subunit K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV D PAM18_3493 putative cytochrome c K00406 ccoP; cytochrome c oxidase cbb3-type subunit III D PAM18_3497 putative cytochrome c K00406 ccoP; cytochrome c oxidase cbb3-type subunit III D PAM18_1010 cioA; cyanide insensitive terminal oxidase K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D PAM18_1011 cioB; cyanide insensitive terminal oxidase K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D PAM18_0793 putative outer membrane protein precursor K12340 tolC; outer membrane protein D PAM18_5085 putative outer membrane protein precursor K12340 tolC; outer membrane protein D PAM18_4685 putative outer membrane protein precursor K12340 tolC; outer membrane protein D PAM18_1983 ptpA; phosphotyrosine protein phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48] D PAM18_1489 rhlI; autoinducer synthesis protein RhlI K13061 rhlI; acyl homoserine lactone synthase [EC:2.3.1.184] D PAM18_1041 RNA polymerase sigma factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily D PAM18_2994 RNA polymerase sigma factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily D PAM18_0471 RNA polymerase sigma factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily D PAM18_3129 putative sigma-70 factor, ECF subfamily K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily D PAM18_2571 foxI; ECF sigma factor FoxI K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily D PAM18_1557 putative transmembrane sensor K07165 fecR; transmembrane sensor D PAM18_1040 putative transmembrane sensor K07165 fecR; transmembrane sensor D PAM18_2653 putative transmembrane sensor K07165 fecR; transmembrane sensor D PAM18_3130 putative transmembrane sensor K07165 fecR; transmembrane sensor D PAM18_3602 putative transmembrane sensor K07165 fecR; transmembrane sensor D PAM18_2993 putative transmembrane sensor K07165 fecR; transmembrane sensor D PAM18_0470 putative transmembrane sensor K07165 fecR; transmembrane sensor D PAM18_0151 putative transmembrane sensor K07165 fecR; transmembrane sensor D PAM18_2572 foxR; Anti-sigma factor FoxR K07165 fecR; transmembrane sensor D PAM18_3538 putative transmembrane sensor K07165 fecR; transmembrane sensor D PAM18_2949 putative transmembrane sensor K07165 fecR; transmembrane sensor D PAM18_5006 putative transmembrane sensor K07165 fecR; transmembrane sensor D PAM18_2139 putative sensor/response regulator hybrid K20973 sagS; two-component system, sensor histidine kinase SagS [EC:2.7.13.3] D PAM18_3436 putative sensor/response regulator hybrid K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3] D PAM18_3069 putative two-component sensor K20975 K20975; two-component system, sensor histidine kinase [EC:2.7.13.3] D PAM18_1620 putative histidine-containing phosphotransfer (HPt) domain K20976 hptB; histidine phosphotransfer protein HptB D PAM18_4057 hypothetical protein K20976 hptB; histidine phosphotransfer protein HptB D PAM18_1619 putative two-component response regulator K20977 hsbR; two-component system, HptB-dependent secretion and biofilm response regulator D PAM18_1618 putative anti-sigma F factor antagonist K20978 hsbA; HptB-dependent secretion and biofilm anti anti-sigma factor D PAM18_1614 flgM; FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis [PATH:paf04148] D PAM18_4610 speC; ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D PAM18_4522 putative iron-sulfur protein K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:paf02024] D PAM18_5055 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein D PAM18_3699 lasI; autoinducer synthesis protein LasI K13060 lasI; acyl homoserine lactone synthase [EC:2.3.1.184] D PAM18_3701 lasR; transcriptional regulator LasR K18304 lasR; LuxR family transcriptional regulator, quorum-sensing system regulator LasR D PAM18_4047 phnA; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D PAM18_0610 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D PAM18_0630 trpG; anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D PAM18_4046 phnB; anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D PAM18_4052 pqsA; putative coenzyme A ligase K18000 pqsA; anthranilate-CoA ligase [EC:6.2.1.32] D PAM18_4051 pqsB; beta-keto-acyl-acyl-carrier protein synthase-like protein K18001 pqsB; 2-heptyl-4(1H)-quinolone synthase subunit PqsB [EC:2.3.1.230] D PAM18_4050 pqsC; beta-keto-acyl-acyl-carrier protein synthase-like protein K18002 pqsC; 2-heptyl-4(1H)-quinolone synthase subunit PqsC [EC:2.3.1.230] D PAM18_4049 pqsD; 3-oxoacyl-(acyl carrier protein) synthase III K18003 pqsD; anthraniloyl-CoA anthraniloyltransferase [EC:2.3.1.262] D PAM18_4048 pqsE; Quinolone signal response protein K20257 pqsE; 2-aminobenzoylacetyl-CoA thioesterase [EC:3.1.2.32] D PAM18_2406 pqsH; putative FAD-dependent monooxygenase K17940 pqsH; 2-heptyl-3-hydroxy-4(1H)-quinolone synthase [EC:1.14.13.182] D PAM18_4045 mvfR; Transcriptional regulator MvfR K19735 mvfR; LysR family transcriptional regulator, quorum-sensing system regulator MvfR D PAM18_1489 rhlI; autoinducer synthesis protein RhlI K13061 rhlI; acyl homoserine lactone synthase [EC:2.3.1.184] D PAM18_1488 rhlR; transcriptional regulator RhlR K18099 rhlR; LuxR family transcriptional regulator, quorum-sensing system regulator RhlR D PAM18_1486 rhlA; rhamnosyltransferase chain A K18100 rhlA; rhamnosyltransferase subunit A [EC:2.4.1.-] D PAM18_1487 rhlB; rhamnosyltransferase chain B K18101 rhlB; rhamnosyltransferase subunit B [EC:2.4.1.-] D PAM18_3902 rhlC; rhamnosyltransferase 2 K12990 rfbF; rhamnosyltransferase [EC:2.4.1.-] D PAM18_3170 lasA; LasA protease precursor K08642 lasA; LasA protease [EC:3.4.24.-] D PAM18_1222 lasB; elastase LasB K01399 lasB; pseudolysin [EC:3.4.24.26] D PAM18_2466 lecA; LecA K20258 lecA; PA-I galactophilic lectin D PAM18_2467 hypothetical protein K20259 lecB; PA-IIL fucose-binding lectin D PAM18_0727 phzA1; putative phenazine biosynthesis protein K20260 phzA_B; phenazine biosynthesis protein D PAM18_3143 phzA2; putative phenazine biosynthesis protein K20260 phzA_B; phenazine biosynthesis protein D PAM18_0726 phzB1; putative phenazine biosynthesis protein K20260 phzA_B; phenazine biosynthesis protein D PAM18_3142 phzB2; putative phenazine biosynthesis protein K20260 phzA_B; phenazine biosynthesis protein D PAM18_3141 phzC2; phenazine biosynthesis protein PhzC K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D PAM18_2120 putative aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D PAM18_3296 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D PAM18_2019 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D PAM18_0725 phzC1; phenazine biosynthesis protein PhzC K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D PAM18_3140 phzD2; phenazine biosynthesis protein PhzD K20261 phzD; trans-2,3-dihydro-3-hydroxyanthranilic acid synthase [EC:3.3.2.15] D PAM18_0724 phzD1; phenazine biosynthesis protein PhzD K20261 phzD; trans-2,3-dihydro-3-hydroxyanthranilic acid synthase [EC:3.3.2.15] D PAM18_3139 phzE2; phenazine biosynthesis protein PhzE K13063 phzE; 2-amino-4-deoxychorismate synthase [EC:2.6.1.86] D PAM18_0723 phzE1; phenazine biosynthesis protein PhzE K13063 phzE; 2-amino-4-deoxychorismate synthase [EC:2.6.1.86] D PAM18_3138 phzF2; putative phenazine biosynthesis protein K06998 phzF; trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17] D PAM18_0722 phzF1; putative phenazine biosynthesis protein K06998 phzF; trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17] D PAM18_3137 phzG2; putative pyridoxamine 5'-phosphate oxidase K20262 phzG; dihydrophenazinedicarboxylate synthase [EC:1.10.3.16] D PAM18_0721 phzG1; putative pyridoxamine 5'-phosphate oxidase K20262 phzG; dihydrophenazinedicarboxylate synthase [EC:1.10.3.16] D PAM18_4885 pmrB; PmrB: two-component regulator system signal sensor kinase PmrB K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3] D PAM18_2559 putative two-component sensor K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3] D PAM18_4884 pmrA; PmrA: two-component regulator system response regulator PmrA K07666 qseB; two-component system, OmpR family, response regulator QseB D PAM18_2560 putative two-component response regulator K07666 qseB; two-component system, OmpR family, response regulator QseB D PAM18_3410 kdpE; two-component response regulator KdpE K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D PAM18_4913 putative amino acid permease K20265 gadC; glutamate:GABA antiporter D PAM18_4327 hypothetical protein K11530 lsrG; (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase [EC:5.3.1.32] D PAM18_3896 putative transcriptional regulator K18098 bjaR1; LuxR family transcriptional regulator, quorum-sensing system regulator BjaR1 D PAM18_0218 putative binding protein component of ABC transporter K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D PAM18_1721 putative ABC transporter, periplasmic substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D PAM18_0603 putative binding protein component of ABC transporter K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D PAM18_0605 putative binding protein component of ABC transporter K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D PAM18_5098 putative extracellular solute-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D PAM18_1718 putative permease of ABC transporter K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D PAM18_0607 putative permease of ABC transporter K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D PAM18_0606 putative permease of ABC transporter K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D PAM18_1719 putative permease of ABC transporter K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D PAM18_1717 putative ATP-binding component of ABC transporter K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D PAM18_0604 putative ATP-binding component of ABC transporter K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D PAM18_3970 braC; branched-chain amino acid transport protein BraC K01999 livK; branched-chain amino acid transport system substrate-binding protein D PAM18_1601 amiC; aliphatic amidase expression-regulating protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D PAM18_5024 putative binding protein component of ABC transporter K01999 livK; branched-chain amino acid transport system substrate-binding protein D PAM18_3971 braD; branched-chain amino acid transport protein BraD K01997 livH; branched-chain amino acid transport system permease protein D PAM18_5023 putative permease of ABC branched chain amino acid transporter K01997 livH; branched-chain amino acid transport system permease protein D PAM18_3972 livM; leucine/isoleucine/valine transporter permease subunit K01998 livM; branched-chain amino acid transport system permease protein D PAM18_5022 putative permease of ABC branched-chain amino acid transporter K01998 livM; branched-chain amino acid transport system permease protein D PAM18_3973 livG; leucine/isoleucine/valine transporter ATP-binding subunit K01995 livG; branched-chain amino acid transport system ATP-binding protein D PAM18_5021 putative ATP-binding component of ABC transporter K01995 livG; branched-chain amino acid transport system ATP-binding protein D PAM18_3974 braG; branched-chain amino acid transport protein BraG K01996 livF; branched-chain amino acid transport system ATP-binding protein D PAM18_5020 putative ATP-binding component of ABC transporter K01996 livF; branched-chain amino acid transport system ATP-binding protein D PAM18_3167 hypothetical protein K20276 bapA; large repetitive protein D PAM18_1604 lecB; fucose-binding lectin PA-IIL K20277 bcl; mannose-binding lectin D PAM18_1668 fadD2; acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D PAM18_1669 fadD1; acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D PAM18_3430 putative AMP-binding enzyme K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D PAM18_0633 vfr; cAMP-regulatory protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D PAM18_0270 putative transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D PAM18_5620 np20; transcriptional regulator np20 K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D PAM18_0893 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D PAM18_0884 ribD; riboflavin-specific deaminase/reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D PAM18_1644 hypothetical protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D PAM18_4925 hypothetical protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D PAM18_0731 mexH; putative Resistance-Nodulation-Cell Division (RND) efflux membrane fusion protein precursor K18306 mexH; membrane fusion protein, multidrug efflux system D PAM18_0730 mexI; putative Resistance-Nodulation-Cell Division (RND) efflux transporter K18307 mexI; multidrug efflux pump D PAM18_0427 oprM; Major intrinsic multiple antibiotic resistance efflux outer membrane protein OprM precursor K18139 oprM; outer membrane protein, multidrug efflux system D PAM18_5696 putative inner membrane protein translocase component YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D PAM18_0654 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D PAM18_4855 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D PAM18_0687 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D PAM18_1116 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D PAM18_4494 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D PAM18_0372 ftsY; signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor D PAM18_5242 secB; preprotein translocase subunit SecB K03071 secB; preprotein translocase subunit SecB D PAM18_1199 ffh; signal recognition particle protein Ffh K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D PAM18_4196 plcH; hemolytic phospholipase C precursor K01114 plc; phospholipase C [EC:3.1.4.3] D PAM18_1646 plcN; non-hemolytic phospholipase C precursor K01114 plc; phospholipase C [EC:3.1.4.3] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa [PATH:paf02025] D PAM18_0411 pilJ; twitching motility protein PilJ K02660 pilJ; twitching motility protein PilJ D PAM18_0410 pilI; twitching motility protein PilI K02659 pilI; twitching motility protein PilI D PAM18_0413 chpA; putative component of chemotactic signal transduction system K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator) D PAM18_0415 chpC; putative chemotaxis protein K06598 chpC; chemosensory pili system protein ChpC D PAM18_0409 pilH; twitching motility protein PilH K02658 pilH; twitching motility two-component system response regulator PilH D PAM18_0408 pilG; twitching motility protein PilG K02657 pilG; twitching motility two-component system response regulator PilG D PAM18_1754 cyaB; CyaB K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D PAM18_5080 putative phosphohydrolase K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53] D PAM18_0633 vfr; cAMP-regulatory protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D PAM18_0270 putative transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D PAM18_3937 fleQ; transcriptional regulator FleQ K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D PAM18_3333 exsA; transcriptional regulator ExsA K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA D PAM18_3699 lasI; autoinducer synthesis protein LasI K13060 lasI; acyl homoserine lactone synthase [EC:2.3.1.184] D PAM18_3701 lasR; transcriptional regulator LasR K18304 lasR; LuxR family transcriptional regulator, quorum-sensing system regulator LasR D PAM18_1489 rhlI; autoinducer synthesis protein RhlI K13061 rhlI; acyl homoserine lactone synthase [EC:2.3.1.184] D PAM18_1488 rhlR; transcriptional regulator RhlR K18099 rhlR; LuxR family transcriptional regulator, quorum-sensing system regulator RhlR D PAM18_1486 rhlA; rhamnosyltransferase chain A K18100 rhlA; rhamnosyltransferase subunit A [EC:2.4.1.-] D PAM18_1487 rhlB; rhamnosyltransferase chain B K18101 rhlB; rhamnosyltransferase subunit B [EC:2.4.1.-] D PAM18_3902 rhlC; rhamnosyltransferase 2 K12990 rfbF; rhamnosyltransferase [EC:2.4.1.-] D PAM18_2466 lecA; LecA K20258 lecA; PA-I galactophilic lectin D PAM18_2467 hypothetical protein K20259 lecB; PA-IIL fucose-binding lectin D PAM18_4047 phnA; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D PAM18_0610 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D PAM18_0630 trpG; anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D PAM18_4046 phnB; anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D PAM18_4052 pqsA; putative coenzyme A ligase K18000 pqsA; anthranilate-CoA ligase [EC:6.2.1.32] D PAM18_4051 pqsB; beta-keto-acyl-acyl-carrier protein synthase-like protein K18001 pqsB; 2-heptyl-4(1H)-quinolone synthase subunit PqsB [EC:2.3.1.230] D PAM18_4050 pqsC; beta-keto-acyl-acyl-carrier protein synthase-like protein K18002 pqsC; 2-heptyl-4(1H)-quinolone synthase subunit PqsC [EC:2.3.1.230] D PAM18_4049 pqsD; 3-oxoacyl-(acyl carrier protein) synthase III K18003 pqsD; anthraniloyl-CoA anthraniloyltransferase [EC:2.3.1.262] D PAM18_4048 pqsE; Quinolone signal response protein K20257 pqsE; 2-aminobenzoylacetyl-CoA thioesterase [EC:3.1.2.32] D PAM18_2406 pqsH; putative FAD-dependent monooxygenase K17940 pqsH; 2-heptyl-3-hydroxy-4(1H)-quinolone synthase [EC:1.14.13.182] D PAM18_4045 mvfR; Transcriptional regulator MvfR K19735 mvfR; LysR family transcriptional regulator, quorum-sensing system regulator MvfR D PAM18_4111 gacS; sensor/response regulator hybrid K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3] D PAM18_0965 ladS; Lost Adherence Sensor, LadS K20971 ladS; two-component system, sensor histidine kinase LadS D PAM18_4967 retS; RetS (Regulator of Exopolysaccharide and Type III Secretion) K20972 retS; two-component system, sensor histidine kinase RetS D PAM18_1503 putative sensor/response regulator hybrid K20972 retS; two-component system, sensor histidine kinase RetS D PAM18_2407 gacA; response regulator GacA K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY D PAM18_R002 rsmY; rsmY K20969 rsmY; small regulatory RNA RsmY D PAM18_R014 rsmZ; rsmZ K20970 rsmZ; small regulatory RNA RsmZ D PAM18_2435 regulatory protein K03563 csrA; carbon storage regulator D PAM18_4134 rsmA; carbon storage regulator K03563 csrA; carbon storage regulator D PAM18_2139 putative sensor/response regulator hybrid K20973 sagS; two-component system, sensor histidine kinase SagS [EC:2.7.13.3] D PAM18_3436 putative sensor/response regulator hybrid K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3] D PAM18_3069 putative two-component sensor K20975 K20975; two-component system, sensor histidine kinase [EC:2.7.13.3] D PAM18_1620 putative histidine-containing phosphotransfer (HPt) domain K20976 hptB; histidine phosphotransfer protein HptB D PAM18_4057 hypothetical protein K20976 hptB; histidine phosphotransfer protein HptB D PAM18_1619 putative two-component response regulator K20977 hsbR; two-component system, HptB-dependent secretion and biofilm response regulator D PAM18_1618 putative anti-sigma F factor antagonist K20978 hsbA; HptB-dependent secretion and biofilm anti anti-sigma factor D PAM18_1614 flgM; FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM D PAM18_3676 fliA; flagellar biosynthesis sigma factor K02405 fliA; RNA polymerase sigma factor FliA D PAM18_3377 stp1; serine/threonine phosphoprotein phosphatase Stp1 K11915 stp1; serine/threonine protein phosphatase Stp1 [EC:3.1.3.16] D PAM18_0077 pppA; PppA K11915 stp1; serine/threonine protein phosphatase Stp1 [EC:3.1.3.16] D PAM18_0078 hypothetical protein K11890 impM; type VI secretion system protein ImpM D PAM18_2680 hypothetical protein K11891 impL; type VI secretion system protein ImpL D PAM18_3378 hypothetical protein K11891 impL; type VI secretion system protein ImpL D PAM18_0079 icmF1; IcmF1 K11891 impL; type VI secretion system protein ImpL D PAM18_2678 hypothetical protein K11893 impJ; type VI secretion system protein ImpJ D PAM18_3380 hypothetical protein K11893 impJ; type VI secretion system protein ImpJ D PAM18_0081 hypothetical protein K11893 impJ; type VI secretion system protein ImpJ D PAM18_0083 fha1; Fha1 K11913 fha1; type VI secretion system protein D PAM18_2681 hypothetical protein K11902 impA; type VI secretion system protein ImpA D PAM18_0084 hypothetical protein K11902 impA; type VI secretion system protein ImpA D PAM18_2676 hypothetical protein K11901 impB; type VI secretion system protein ImpB D PAM18_3389 hypothetical protein K11901 impB; type VI secretion system protein ImpB D PAM18_0085 hypothetical protein K11901 impB; type VI secretion system protein ImpB D PAM18_2675 hypothetical protein K11900 impC; type VI secretion system protein ImpC D PAM18_3388 hypothetical protein K11900 impC; type VI secretion system protein ImpC D PAM18_0086 hypothetical protein K11900 impC; type VI secretion system protein ImpC D PAM18_2674 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp D PAM18_3619 hcpB; secreted protein Hcp K11903 hcp; type VI secretion system secreted protein Hcp D PAM18_0258 hcpB; secreted protein Hcp K11903 hcp; type VI secretion system secreted protein Hcp D PAM18_0087 hcp1; Hcp1 K11903 hcp; type VI secretion system secreted protein Hcp D PAM18_5387 hcpB; secreted protein Hcp K11903 hcp; type VI secretion system secreted protein Hcp D PAM18_2671 hypothetical protein K11895 impH; type VI secretion system protein ImpH D PAM18_3385 hypothetical protein K11895 impH; type VI secretion system protein ImpH D PAM18_0091 hypothetical protein K11895 impH; type VI secretion system protein ImpH D PAM18_2670 putative ClpA/B-type protease K11907 vasG; type VI secretion system protein VasG D PAM18_3384 putative ClpA/B-type protease K11907 vasG; type VI secretion system protein VasG D PAM18_0092 clpV1; ClpV1 K11907 vasG; type VI secretion system protein VasG D PAM18_1238 wspA; putative chemotaxis transducer K13487 wspA; methyl-accepting chemotaxis protein WspA D PAM18_1242 putative chemotaxis sensor/effector fusion protein K13490 wspE; two-component system, chemotaxis family, sensor histidine kinase and response regulator WspE D PAM18_1239 wspB; hypothetical protein K13488 wspB; chemotaxis-related protein WspB D PAM18_1241 wspD; CheW domain protein K13489 wspD; chemotaxis-related protein WspD D PAM18_1243 wspF; chemotaxis-specific methylesterase K13491 wspF; two-component system, chemotaxis family, response regulator WspF [EC:3.1.1.61] D PAM18_1244 wspR; putative two-component response regulator K11444 wspR; two-component system, chemotaxis family, response regulator WspR [EC:2.7.7.65] D PAM18_4422 hypothetical protein K21019 sadC; diguanylate cyclase [EC:2.7.7.65] D PAM18_0169 putative GGDEF domain protein K21020 siaD; diguanylate cyclase [EC:2.7.7.65] D PAM18_3912 hypothetical protein K21021 tpbB; diguanylate cyclase [EC:2.7.7.65] D PAM18_3927 hypothetical protein K21022 roeA; diguanylate cyclase [EC:2.7.7.65] D PAM18_3319 putative integral membrane sensor domain protein K21023 mucR; diguanylate cyclase [EC:2.7.7.65] D PAM18_4458 putative GGDEF domain/EAL domain protein K21024 bifA; c-di-GMP phosphodiesterase [EC:3.1.4.52] D PAM18_2809 pslA; putative glycosyl transferase K20997 pslA; polysaccharide biosynthesis protein PslA D PAM18_1435 algA; phosphomannose isomerase/guanosine 5'-diphospho-D-mannose pyrophosphorylase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D PAM18_2808 pslB; putative phosphomannose isomerase/GDP-mannose pyrophosphorylase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D PAM18_5574 wbpW; phosphomannose isomerase/GDP-mannose WbpW K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D PAM18_2807 pslC; putative glycosyl transferase K25205 pslC; polysaccharide biosynthesis protein PslC D PAM18_2806 pslD; putative exopolysaccharide transporter K20987 pslD; polysaccharide biosynthesis/export protein PslD D PAM18_2805 pslE; hypothetical protein K20998 pslE; polysaccharide biosynthesis protein PslE D PAM18_2804 pslF; putative glycosyl transferase K20999 pslF; polysaccharide biosynthesis protein PslF D PAM18_2803 pslG; putative glycosyl hydrolase K21000 pslG; polysaccharide biosynthesis protein PslG D PAM18_2802 pslH; putative glycosyltransferase K21001 pslH; polysaccharide biosynthesis protein PslH D PAM18_2801 pslI; putative transferase K21002 pslI; polysaccharide biosynthesis protein PslI D PAM18_2800 pslJ; hypothetical protein K21003 pslJ; polysaccharide biosynthesis protein PslJ D PAM18_2799 pslK; hypothetical protein K21004 pslK; polysaccharide biosynthesis protein PslK D PAM18_2798 pslL; putative acetyltransferase K21005 pslL; polysaccharide biosynthesis protein PslL D PAM18_1896 pelA; hypothetical protein K21006 pelA; polysaccharide biosynthesis protein PelA D PAM18_1897 pelB; hypothetical protein K21007 pelB; polysaccharide biosynthesis protein PelB D PAM18_1898 pelC; putative lipoprotein K21008 pelC; polysaccharide biosynthesis protein PelC D PAM18_1899 pelD; hypothetical protein K21009 pelD; polysaccharide biosynthesis protein PelD D PAM18_1900 pelE; hypothetical protein K21010 pelE; polysaccharide biosynthesis protein PelE D PAM18_1901 pelF; putative glycosyltransferase K21011 pelF; polysaccharide biosynthesis protein PelF D PAM18_1902 pelG; PelG K21012 pelG; polysaccharide biosynthesis protein PelG D PAM18_1444 alg44; alginate biosynthesis protein Alg44 K19291 alg44; mannuronan synthase [EC:2.4.1.33] D PAM18_5070 fimX; FimX K21025 fimX; multidomain signaling protein FimX D PAM18_5069 hypothetical protein K23127 fimW; cyclic-di-GMP-binding protein C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis [PATH:paf02030] D PAM18_0176 aer2; aerotaxis transducer Aer2 K03406 mcp; methyl-accepting chemotaxis protein D PAM18_0180 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein D PAM18_2476 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein D PAM18_2042 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein D PAM18_2320 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein D PAM18_2322 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein D PAM18_3109 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein D PAM18_3780 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein D PAM18_2420 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein D PAM18_3400 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein D PAM18_4380 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein D PAM18_4611 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein D PAM18_3439 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein D PAM18_3708 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein D PAM18_4396 pctC; chemotactic transducer PctC K03406 mcp; methyl-accepting chemotaxis protein D PAM18_4398 pctC; chemotactic transducer PctC K03406 mcp; methyl-accepting chemotaxis protein D PAM18_4399 pctC; chemotactic transducer PctC K03406 mcp; methyl-accepting chemotaxis protein D PAM18_4728 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein D PAM18_5026 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein D PAM18_5187 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein D PAM18_3487 aer; aerotaxis receptor Aer K03776 aer; aerotaxis receptor D PAM18_3099 rbsB; binding protein component precursor of ABC ribose transporter K10439 rbsB; ribose transport system substrate-binding protein D PAM18_4587 putative binding protein component of ABC transporter K12368 dppA; dipeptide transport system substrate-binding protein D PAM18_4588 putative binding protein component of ABC transporter K12368 dppA; dipeptide transport system substrate-binding protein D PAM18_4591 putative binding protein component of ABC transporter K12368 dppA; dipeptide transport system substrate-binding protein D PAM18_4593 putative binding protein component of ABC transporter K12368 dppA; dipeptide transport system substrate-binding protein D PAM18_5437 putative binding protein component of ABC dipeptide transporter K12368 dppA; dipeptide transport system substrate-binding protein D PAM18_0178 putative two-component sensor K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D PAM18_3673 putative two-component sensor K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D PAM18_0177 putative purine-binding chemotaxis protein K03408 cheW; purine-binding chemotaxis protein CheW D PAM18_3667 putative purine-binding chemotaxis protein K03408 cheW; purine-binding chemotaxis protein CheW D PAM18_3668 putative CheW domain protein K03408 cheW; purine-binding chemotaxis protein CheW D PAM18_0179 putative two-component response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D PAM18_3675 cheY; two-component response regulator CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D PAM18_3674 cheZ; chemotaxis protein CheZ K03414 cheZ; chemotaxis protein CheZ D PAM18_0173 chemotaxis-specific methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D PAM18_3672 chemotaxis-specific methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D PAM18_1616 putative chemotaxis protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D PAM18_0174 putative chemotaxis protein K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44] D PAM18_0175 putative chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D PAM18_1617 putative chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D PAM18_3932 fliG; flagellar motor switch protein G K02410 fliG; flagellar motor switch protein FliG D PAM18_3688 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D PAM18_3687 fliN; flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN D PAM18_3671 motC; flagellar motor protein K02556 motA; chemotaxis protein MotA D PAM18_5065 motA; flagellar motor protein MotA K02556 motA; chemotaxis protein MotA D PAM18_3670 motD; flagellar motor protein MotD K02557 motB; chemotaxis protein MotB D PAM18_5064 motB; flagellar motor protein MotB K02557 motB; chemotaxis protein MotB C 02040 Flagellar assembly [PATH:paf02040] D PAM18_3934 fliE; flagellar hook-basal body protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE D PAM18_3933 fliF; flagellar MS-ring protein K02409 fliF; flagellar M-ring protein FliF D PAM18_3932 fliG; flagellar motor switch protein G K02410 fliG; flagellar motor switch protein FliG D PAM18_3931 fliH; flagellar assembly protein H K02411 fliH; flagellar assembly protein FliH D PAM18_3930 fliI; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D PAM18_3929 fliJ; flagellar biosynthesis chaperone K02413 fliJ; flagellar protein FliJ D PAM18_3690 putative flagellar hook-length control protein FliK K02414 fliK; flagellar hook-length control protein FliK D PAM18_3689 fliL; flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D PAM18_5352 flagellar basal body-associated protein FliL-like protein K02415 fliL; flagellar protein FliL D PAM18_3688 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D PAM18_3687 fliN; flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN D PAM18_3686 fliO; flagellar protein FliO K02418 fliO; flagellar protein FliO/FliZ D PAM18_3685 fliP; flagellar biosynthesis protein FliP K02419 fliP; flagellar biosynthesis protein FliP D PAM18_3684 fliQ; flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D PAM18_3683 fliR; flagellar biosynthesis protein FliR K02421 fliR; flagellar biosynthesis protein FliR D PAM18_3679 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D PAM18_3682 flhB; flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D PAM18_1615 flgA; flagellar basal body P-ring biosynthesis protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA D PAM18_3967 flgB; flagellar basal body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D PAM18_3966 flgC; flagellar basal body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D PAM18_3965 flgD; flagellar basal body rod modification protein K02389 flgD; flagellar basal-body rod modification protein FlgD D PAM18_3964 flgE; flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE D PAM18_3963 flgF; flagellar basal body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF D PAM18_3962 flgG; flagellar basal body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D PAM18_3961 flgH; flagellar basal body L-ring protein K02393 flgH; flagellar L-ring protein FlgH D PAM18_3960 flgI; flagellar basal body P-ring protein K02394 flgI; flagellar P-ring protein FlgI D PAM18_3959 flgJ; flagellar rod assembly protein/muramidase FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ D PAM18_3958 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D PAM18_3957 flgL; flagellar hook-associated protein FlgL K02397 flgL; flagellar hook-associated protein 3 FlgL D PAM18_1460 putative outer membrane protein precursor K21218 motY; sodium-type flagellar protein MotY D PAM18_3943 fliC; flagellin type B K02406 fliC; flagellin D PAM18_3941 flagellar cap protein FliD K02407 fliD; flagellar hook-associated protein 2 D PAM18_3939 fliS; flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D PAM18_3940 fliS; Flagellin-specific chaperone K02422 fliS; flagellar secretion chaperone FliS D PAM18_3938 hypothetical protein K02423 fliT; flagellar protein FliT D PAM18_3671 motC; flagellar motor protein K02556 motA; chemotaxis protein MotA D PAM18_5065 motA; flagellar motor protein MotA K02556 motA; chemotaxis protein MotA D PAM18_3670 motD; flagellar motor protein MotD K02557 motB; chemotaxis protein MotB D PAM18_5064 motB; flagellar motor protein MotB K02557 motB; chemotaxis protein MotB D PAM18_1614 flgM; FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM D PAM18_1613 flgN; putative export chaperone involved in flagellar synthesis K02399 flgN; flagellar biosynthesis protein FlgN D PAM18_0310 putative binding protein component of ABC transporter K02424 tcyA; L-cystine transport system substrate-binding protein D PAM18_0577 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D PAM18_3937 fleQ; transcriptional regulator FleQ K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D PAM18_4553 rpoN; RNA polymerase factor sigma-54 K03092 rpoN; RNA polymerase sigma-54 factor D PAM18_3935 fleR; two-component response regulator K10943 flrC; two-component system, response regulator FlrC D PAM18_3676 fliA; flagellar biosynthesis sigma factor K02405 fliA; RNA polymerase sigma factor FliA C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D PAM18_1311 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism [PATH:paf04980] D PAM18_4490 putative cob(I)alamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D PAM18_3199 metH; B12-dependent methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:paf01501] D PAM18_4079 oprD; Basic amino acid, basic peptide and imipenem outer membrane porin OprD precursor K18093 oprD; imipenem/basic amino acid-specific outer membrane pore [EC:3.4.21.-] D PAM18_0189 putative porin K18093 oprD; imipenem/basic amino acid-specific outer membrane pore [EC:3.4.21.-] D PAM18_2272 opdB; proline porin OpdB K18093 oprD; imipenem/basic amino acid-specific outer membrane pore [EC:3.4.21.-] D PAM18_4484 putative permease K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D PAM18_0719 putative transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D PAM18_1955 nagZ; beta-hexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D PAM18_0830 ampR; transcriptional regulator AmpR K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase D PAM18_3246 putative two-component sensor K18072 parS; two-component system, OmpR family, sensor kinase ParS [EC:2.7.13.3] D PAM18_3245 putative two-component response regulator K18073 parR; two-component system, OmpR family, response regulator ParR D PAM18_5592 hypothetical protein K18148 rtcB; release factor H-coupled RctB family protein D PAM18_3024 putative transcriptional regulator K18129 mexZ; TetR/AcrR family transcriptional regulator, mexXY operon repressor D PAM18_3025 periplasmic multidrug efflux lipoprotein precursor K18094 mexX; membrane fusion protein, multidrug efflux system D PAM18_3026 multidrug efflux protein K18095 mexY; multidrug efflux pump D PAM18_1225 putative transcriptional regulator K18130 nalC; TetR/AcrR family transcriptional regulator, transcriptional repressor NalC D PAM18_1227 hypothetical protein K18150 armR; antirepressor for MexR D PAM18_0424 mexR; multidrug resistance operon repressor MexR K18131 mexR; MarR family transcriptional regulator, repressor of the mexAB-oprM multidrug resistance operon D PAM18_1411 putative transcriptional regulator K18135 nalD; TetR/AcrR family transcriptional regulator, repressor of the mexAB-oprM multidrug resistance operon D PAM18_0425 mexA; Resistance-Nodulation-Cell Division (RND) multidrug efflux membrane fusion protein MexA precursor K03585 acrA; membrane fusion protein, multidrug efflux system D PAM18_4465 putative Resistance-Nodulation-Cell Division (RND) efflux membrane fusion protein precursor K03585 acrA; membrane fusion protein, multidrug efflux system D PAM18_0426 mexB; Resistance-Nodulation-Cell Division (RND) multidrug efflux transporter MexB K18138 acrB; multidrug efflux pump D PAM18_4466 multidrug efflux protein K18138 acrB; multidrug efflux pump D PAM18_0427 oprM; Major intrinsic multiple antibiotic resistance efflux outer membrane protein OprM precursor K18139 oprM; outer membrane protein, multidrug efflux system D PAM18_0793 putative outer membrane protein precursor K12340 tolC; outer membrane protein D PAM18_5085 putative outer membrane protein precursor K12340 tolC; outer membrane protein D PAM18_4685 putative outer membrane protein precursor K12340 tolC; outer membrane protein D PAM18_5160 ponA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D PAM18_0937 pbpA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D PAM18_4509 ftsI; penicillin-binding protein 3 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D PAM18_2768 pbpC; penicillin-binding protein 3A K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D PAM18_0829 ampC; beta-lactamase K20320 blaPDC; beta-lactamase class C PDC [EC:3.5.2.6] D PAM18_5635 putative beta-lactamase K18973 blaOXA-50; beta-lactamase class D OXA-50 [EC:3.5.2.6] C 01502 Vancomycin resistance [PATH:paf01502] D PAM18_1157 hypothetical protein K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D PAM18_4501 ddl; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D PAM18_0736 ddlA; D-alanine-D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D PAM18_5041 alr; biosynthetic alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D PAM18_5422 dadX; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D PAM18_4507 murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D PAM18_4506 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D PAM18_4503 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D PAM18_4290 hypothetical protein K18346 vanW; vancomycin resistance protein VanW C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:paf01503] D PAM18_3853 phoQ; two-component sensor PhoQ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D PAM18_3854 phoP; two-component response regulator PhoP K07660 phoP; two-component system, OmpR family, response regulator PhoP D PAM18_3246 putative two-component sensor K18072 parS; two-component system, OmpR family, sensor kinase ParS [EC:2.7.13.3] D PAM18_3245 putative two-component response regulator K18073 parR; two-component system, OmpR family, response regulator ParR D PAM18_1434 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87] D PAM18_1433 putative glycosyl transferase K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53] D PAM18_1432 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase K10011 arnA; UDP-4-amino-4-deoxy-L-arabinose formyltransferase / UDP-glucuronic acid dehydrogenase (UDP-4-keto-hexauronic acid decarboxylating) [EC:2.1.2.13 1.1.1.305] D PAM18_1431 putative polysaccharide deacetylase K13014 arnD; undecaprenyl phosphate-alpha-L-ara4FN deformylase [EC:3.5.1.-] D PAM18_1430 arnT; 4-amino-4-deoxy-L-arabinose transferase K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43] D PAM18_1429 putative inner membrane protein K12962 arnE; undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnE D PAM18_1428 hypothetical protein K12963 arnF; undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnF D PAM18_3073 hypothetical protein K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43] D PAM18_1655 hypothetical protein K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43] D PAM18_1222 lasB; elastase LasB K01399 lasB; pseudolysin [EC:3.4.24.26] D PAM18_3782 aprA; alkaline metalloproteinase precursor K01406 prtC; serralysin [EC:3.4.24.40] D PAM18_1767 putative two-component response regulator K07662 cpxR; two-component system, OmpR family, response regulator CpxR D PAM18_5058 amiB; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D PAM18_5660 amiA; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D PAM18_4272 mucD; serine protease MucD precursor K04771 degP; serine protease Do [EC:3.4.21.107] D PAM18_5610 dsbA; thiol:disulfide interchange protein DsbA K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D PAM18_1744 ppiA; peptidyl-prolyl cis-trans isomerase A K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D PAM18_0425 mexA; Resistance-Nodulation-Cell Division (RND) multidrug efflux membrane fusion protein MexA precursor K03585 acrA; membrane fusion protein, multidrug efflux system D PAM18_4465 putative Resistance-Nodulation-Cell Division (RND) efflux membrane fusion protein precursor K03585 acrA; membrane fusion protein, multidrug efflux system D PAM18_0426 mexB; Resistance-Nodulation-Cell Division (RND) multidrug efflux transporter MexB K18138 acrB; multidrug efflux pump D PAM18_4466 multidrug efflux protein K18138 acrB; multidrug efflux pump D PAM18_0793 putative outer membrane protein precursor K12340 tolC; outer membrane protein D PAM18_5085 putative outer membrane protein precursor K12340 tolC; outer membrane protein D PAM18_4685 putative outer membrane protein precursor K12340 tolC; outer membrane protein D PAM18_1302 lpxA; UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D PAM18_4119 hypothetical protein K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:paf01000] C 01001 Protein kinases [BR:paf01001] D PAM18_4889 putative serine/threonine protein kinase K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D PAM18_5481 phoR; two-component sensor PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D PAM18_3853 phoQ; two-component sensor PhoQ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D PAM18_5318 envZ; two-component sensor EnvZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D PAM18_3875 putative two-component sensor K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3] D PAM18_0463 creC; sensory histidine kinase CreC K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3] D PAM18_3693 putative two-component sensor K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D PAM18_2153 copS; two-component sensor, CopS K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D PAM18_2515 putative two-component sensor K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D PAM18_4998 putative two-component sensor K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D PAM18_4885 pmrB; PmrB: two-component regulator system signal sensor kinase PmrB K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3] D PAM18_2559 putative two-component sensor K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3] D PAM18_3411 kdpD; two-component sensor KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D PAM18_4282 putative two-component sensor K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D PAM18_3246 putative two-component sensor K18072 parS; two-component system, OmpR family, sensor kinase ParS [EC:2.7.13.3] D PAM18_2285 pfeS; two-component sensor PfeS K19609 pfeS; two-component system, OmpR family, sensor histidine kinase PfeS [EC:2.7.13.3] D PAM18_4109 two-component sensor K19609 pfeS; two-component system, OmpR family, sensor histidine kinase PfeS [EC:2.7.13.3] D PAM18_1765 putative two-component sensor K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D PAM18_1064 narX; two-component sensor NarX K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3] D PAM18_4111 gacS; sensor/response regulator hybrid K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3] D PAM18_0994 putative two-component sensor K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3] D PAM18_2410 putative sensor/response regulator hybrid K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3] D PAM18_4382 pprA; two-component sensor PprA K27076 pprA; two-component system, NarL family, sensor histidine kinase PprA [EC:2.7.13.3] D PAM18_5382 algZ; alginate biosynthesis protein AlgZ/FimS K08082 algZ; two-component system, LytTR family, sensor histidine kinase AlgZ [EC:2.7.13.3] D PAM18_5238 ntrB; two-component sensor NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D PAM18_4639 pilS; two-component sensor PilS K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3] D PAM18_5633 putative two-component sensor K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D PAM18_5282 putative two-component sensor K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D PAM18_5605 putative two-component sensor K11383 kinB; two-component system, NtrC family, sensor histidine kinase KinB [EC:2.7.13.3] D PAM18_2421 putative two-component sensor K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D PAM18_0178 putative two-component sensor K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D PAM18_3673 putative two-component sensor K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D PAM18_0413 chpA; putative component of chemotactic signal transduction system K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator) D PAM18_1242 putative chemotaxis sensor/effector fusion protein K13490 wspE; two-component system, chemotaxis family, sensor histidine kinase and response regulator WspE D PAM18_3936 fleS; two-component sensor K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3] D PAM18_4585 putative two-component sensor K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] D PAM18_2139 putative sensor/response regulator hybrid K20973 sagS; two-component system, sensor histidine kinase SagS [EC:2.7.13.3] D PAM18_3436 putative sensor/response regulator hybrid K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3] D PAM18_3069 putative two-component sensor K20975 K20975; two-component system, sensor histidine kinase [EC:2.7.13.3] D PAM18_0965 ladS; Lost Adherence Sensor, LadS K20971 ladS; two-component system, sensor histidine kinase LadS D PAM18_4967 retS; RetS (Regulator of Exopolysaccharide and Type III Secretion) K20972 retS; two-component system, sensor histidine kinase RetS D PAM18_1503 putative sensor/response regulator hybrid K20972 retS; two-component system, sensor histidine kinase RetS C 01009 Protein phosphatases and associated proteins [BR:paf01009] D PAM18_0432 sahH; S-adenosyl-L-homocysteine hydrolase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D PAM18_3976 putative heat shock protein (hsp90 family) K04079 HSP90A; molecular chaperone HtpG D PAM18_3451 htpG; heat shock protein 90 K04079 HSP90A; molecular chaperone HtpG D PAM18_5071 putative phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 01002 Peptidases and inhibitors [BR:paf01002] D PAM18_4652 lspA; lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36] D PAM18_4620 pilD; type 4 prepilin peptidase PilD K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D PAM18_4384 fppA; Flp prepilin peptidase A, FppA K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D PAM18_1170 guaA; GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D PAM18_0292 spuA; putative glutamine amidotransferase K07010 K07010; putative glutamine amidotransferase D PAM18_0794 putative toxin transporter K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB D PAM18_1493 putative lipoprotein K19303 mepH; murein DD-endopeptidase [EC:3.4.-.-] D PAM18_1855 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D PAM18_5151 gltB; glutamate synthase subunit alpha K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D PAM18_1186 putative aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D PAM18_5677 glmS; glucosamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D PAM18_1506 putative glutamine amidotransferase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D PAM18_0053 phzH; putative phenazine-modifying enzyme K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D PAM18_2959 putative asparagine synthetase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D PAM18_5109 asparagine synthetase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D PAM18_3897 chaperone protein HchA K05523 hchA; D-lactate dehydratase / protein deglycase [EC:4.2.1.130 3.5.1.124] D PAM18_0353 pfpI; protease PfpI K05520 yhbO; deglycase [EC:3.5.1.124] D PAM18_0766 putative protease K05520 yhbO; deglycase [EC:3.5.1.124] D PAM18_4426 putative amidase/protease K05520 yhbO; deglycase [EC:3.5.1.124] D PAM18_2109 putative ErfK/YbiS/YcfS/YnhG family protein K16291 erfK; L,D-transpeptidase ErfK/SrfK D PAM18_2079 putative protease K07052 K07052; CAAX protease family protein D PAM18_5246 hypothetical protein K07052 K07052; CAAX protease family protein D PAM18_1880 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D PAM18_0068 prlC; oligopeptidase A K01414 prlC; oligopeptidase A [EC:3.4.24.70] D PAM18_1222 lasB; elastase LasB K01399 lasB; pseudolysin [EC:3.4.24.26] D PAM18_3782 aprA; alkaline metalloproteinase precursor K01406 prtC; serralysin [EC:3.4.24.40] D PAM18_1157 hypothetical protein K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D PAM18_0371 putative zinc protease K07263 pqqL; zinc protease [EC:3.4.24.-] D PAM18_0370 putative peptidase K07263 pqqL; zinc protease [EC:3.4.24.-] D PAM18_1107 pepA; leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D PAM18_5515 putative dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D PAM18_2176 cpg2; glutamate carboxypeptidase K01295 cpg; glutamate carboxypeptidase [EC:3.4.17.11] D PAM18_3871 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D PAM18_2040 putative hydrolase K01451 hipO; hippurate hydrolase [EC:3.5.1.32] D PAM18_4434 putative hydrolase K01451 hipO; hippurate hydrolase [EC:3.5.1.32] D PAM18_3170 lasA; LasA protease precursor K08642 lasA; LasA protease [EC:3.4.24.-] D PAM18_5679 hypothetical protein K21472 lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-] D PAM18_2223 putative methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D PAM18_1289 map; methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D PAM18_4589 putative metallopeptidase K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9] D PAM18_5342 pepP; aminopeptidase P K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D PAM18_4859 ftsH; cell division protein FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D PAM18_2133 htpX; heat shock protein HtpX K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D PAM18_0272 putative Zn-dependent protease with chaperone function K07387 K07387; metalloprotease [EC:3.4.24.-] D PAM18_4043 Putative Zn-dependent protease K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-] D PAM18_1297 putative membrane-associated zinc metalloprotease K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D PAM18_0572 hypothetical protein K21429 impA; immunomodulating metalloprotease D PAM18_0910 hypothetical protein K09933 mtfA; MtfA peptidase D PAM18_3645 putative D-aminopeptidase K01266 dmpA; D-aminopeptidase [EC:3.4.11.19] D PAM18_4272 mucD; serine protease MucD precursor K04771 degP; serine protease Do [EC:3.4.21.107] D PAM18_4537 algW; AlgW protein K04691 hhoB; serine protease DegS [EC:3.4.21.-] D PAM18_0762 piv; protease IV K01337 E3.4.21.50; lysyl endopeptidase [EC:3.4.21.50] D PAM18_3599 putative oligopeptidase K01354 ptrB; oligopeptidase B [EC:3.4.21.83] D PAM18_0941 dacC; D-ala-D-ala-carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D PAM18_4170 pbpG; D-alanyl-D-alanine endopeptidase K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-] D PAM18_1913 putative D-alanyl-D-alanine carboxypeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D PAM18_1639 ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D PAM18_3243 clpP; ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D PAM18_4259 putative ATP-dependent protease K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D PAM18_3241 lon; Lon protease K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D PAM18_1953 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D PAM18_4270 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D PAM18_3600 putative signal peptidase K03100 lepB; signal peptidase I [EC:3.4.21.89] D PAM18_5195 prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D PAM18_1714 prc; periplasmic tail-specific protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D PAM18_5248 putative carboxyl-terminal protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D PAM18_3149 putative penicillin acylase K01434 pac; penicillin G amidase [EC:3.5.1.11] D PAM18_0300 putative penicillin amidase K01434 pac; penicillin G amidase [EC:3.5.1.11] D PAM18_1988 putative peptidase K04773 sppA; protease IV [EC:3.4.21.-] D PAM18_3212 putative periplasmic protease K04774 sohB; serine protease SohB [EC:3.4.21.-] D PAM18_1877 hypothetical protein K02441 glpG; rhomboid protease GlpG [EC:3.4.21.105] D PAM18_5317 LD-carboxypeptidase K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13] D PAM18_1349 Phage head maturation protease K06904 GP4; Escherichia/Staphylococcus phage prohead protease D PAM18_5168 hslV; ATP-dependent protease peptidase subunit K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] D PAM18_0164 putative gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D PAM18_0359 putative gamma-glutamyltranspeptidase precursor K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D PAM18_3564 ggt; gamma-glutamyltranspeptidase precursor K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D PAM18_5561 putative peptidase K08303 prtC; U32 family peptidase [EC:3.4.-.-] D PAM18_1028 putative peptidase K24845 ubiV; O2-independent ubiquinone biosynthesis protein UbiV D PAM18_1027 putative protease K24844 ubiU; O2-independent ubiquinone biosynthesis protein UbiU D PAM18_4563 pmbA; PmbA protein K03592 pmbA; PmbA protein D PAM18_4565 putative tldD protein K03568 tldD; TldD protein D PAM18_2210 eco; ecotin K08276 eco; ecotin D PAM18_4580 hypothetical protein K06894 yfhM; alpha-2-macroglobulin D PAM18_2595 hypothetical protein K04087 hflC; modulator of FtsH protease HflC D PAM18_5052 hflC; protease subunit HflC K04087 hflC; modulator of FtsH protease HflC D PAM18_5053 hflK; protease subunit HflK K04088 hflK; modulator of FtsH protease HflK C 01003 Glycosyltransferases [BR:paf01003] D PAM18_4400 putative glycosyl transferase K14335 pimC; alpha-1,6-mannosyltransferase [EC:2.4.1.-] D PAM18_1753 putative glycosyl transferase K27597 K27597; 1,2-diacylglycerol 3-alpha-glucosyltransferase/glucuronosyltransferase [EC:2.4.1.337 2.4.1.-] D PAM18_2873 glgA; glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21] D PAM18_0377 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D PAM18_4807 mrcB; penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4] D PAM18_5160 ponA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D PAM18_1486 rhlA; rhamnosyltransferase chain A K18100 rhlA; rhamnosyltransferase subunit A [EC:2.4.1.-] D PAM18_1487 rhlB; rhamnosyltransferase chain B K18101 rhlB; rhamnosyltransferase subunit B [EC:2.4.1.-] D PAM18_2804 pslF; putative glycosyl transferase K20999 pslF; polysaccharide biosynthesis protein PslF D PAM18_2802 pslH; putative glycosyltransferase K21001 pslH; polysaccharide biosynthesis protein PslH D PAM18_2801 pslI; putative transferase K21002 pslI; polysaccharide biosynthesis protein PslI D PAM18_1445 alg8; alginate biosynthesis protein Alg8 K19290 alg8; mannuronan synthase [EC:2.4.1.33] D PAM18_1901 pelF; putative glycosyltransferase K21011 pelF; polysaccharide biosynthesis protein PelF D PAM18_5192 mdoH; glucosyltransferase MdoH K03669 mdoH; membrane glycosyltransferase [EC:2.4.1.-] C 01005 Lipopolysaccharide biosynthesis proteins [BR:paf01005] D PAM18_1302 lpxA; UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D PAM18_1303 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D PAM18_4497 lpxC; UDP-3-O-acyl N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D PAM18_1300 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D PAM18_3254 UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D PAM18_1980 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D PAM18_0011 lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D PAM18_1729 lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D PAM18_4103 lpxO2; lipopolysaccharide biosynthetic protein LpxO2 K12979 lpxO; beta-hydroxylase [EC:1.14.11.-] D PAM18_4603 lpxO1; lipopolysaccharide biosynthetic protein LpxO1 K12979 lpxO; beta-hydroxylase [EC:1.14.11.-] D PAM18_5101 waaA; 3-deoxy-D-manno-octulosonic-acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D PAM18_1430 arnT; 4-amino-4-deoxy-L-arabinose transferase K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43] D PAM18_4758 pagL; Lipid A 3-O-deacylase K12976 pagL; lipid A 3-O-deacylase [EC:3.1.1.-] D PAM18_3073 hypothetical protein K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43] D PAM18_1655 hypothetical protein K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43] D PAM18_1310 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D PAM18_3947 CMP-2-keto-3-deoxyoctulosonic acid synthetase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D PAM18_1982 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D PAM18_4549 putative phophatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D PAM18_4548 putative sugar isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D PAM18_5125 waaC; heptosyltransferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23] D PAM18_5126 waaF; heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24] D PAM18_5124 waaG; UDP-glucose:(heptosyl) LPS alpha 1,3-glucosyltransferase WaaG K02844 waaG; UDP-glucose:(heptosyl)LPS alpha-1,3-glucosyltransferase [EC:2.4.1.-] D PAM18_5123 waaP; lipopolysaccharide kinase WaaP K02848 waaP; lipopolysaccharide core heptose(I) kinase [EC:2.7.1.235] D PAM18_4608 hypothetical protein K19353 eptC; heptose-I-phosphate ethanolaminephosphotransferase [EC:2.7.8.-] D PAM18_4331 putative glycosyl transferase K12987 migA; alpha-1,6-rhamnosyltransferase [EC:2.4.1.-] D PAM18_4034 putative glycosyl transferase K12987 migA; alpha-1,6-rhamnosyltransferase [EC:2.4.1.-] D PAM18_5114 putative glycosyl transferase K12988 wapR; alpha-1,3-rhamnosyltransferase [EC:2.4.1.-] D PAM18_4516 phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D PAM18_0006 D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D PAM18_5110 rfaE; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70] D PAM18_1628 rfaD; ADP-L-glycero-D-mannoheptose 6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20] D PAM18_1821 putative group 4 glycosyl transferase K13007 wbpL; glycosyltransferase WbpL [EC:2.4.1.-] D PAM18_5571 wbpX; glycosyltransferase WbpX K24655 wbpX; O-antigen biosynthesis alpha-1,2-rhamnosyltransferase [EC:2.4.1.-] D PAM18_5570 wbpY; glycosyltransferase WbpY K24656 wbpY; O-antigen biosynthesis alpha-1,3-rhamnosyltransferase [EC:2.4.1.-] D PAM18_5569 wbpZ; glycosyltransferase WbpZ K24657 wbpZ; O-antigen biosynthesis rhamnosyltransferase [EC:2.4.1.-] D PAM18_3902 rhlC; rhamnosyltransferase 2 K12990 rfbF; rhamnosyltransferase [EC:2.4.1.-] D PAM18_1812 wzz; O-antigen chain length regulator K05789 wzzB; chain length determinant protein (polysaccharide antigen chain regulator) D PAM18_4929 putative glycosyl transferase K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:paf01011] D PAM18_4541 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D PAM18_1984 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D PAM18_4502 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D PAM18_4505 murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D PAM18_4508 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D PAM18_4501 ddl; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D PAM18_0736 ddlA; D-alanine-D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D PAM18_5041 alr; biosynthetic alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D PAM18_5422 dadX; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D PAM18_4759 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D PAM18_5317 LD-carboxypeptidase K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13] D PAM18_4506 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D PAM18_4503 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D PAM18_3086 bacA; undecaprenyl pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D PAM18_4655 putative virulence factor, membrane protein K03980 murJ; putative peptidoglycan lipid II flippase D PAM18_5160 ponA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D PAM18_4807 mrcB; penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4] D PAM18_0937 pbpA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D PAM18_4509 ftsI; penicillin-binding protein 3 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D PAM18_2768 pbpC; penicillin-binding protein 3A K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D PAM18_0941 dacC; D-ala-D-ala-carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D PAM18_1913 putative D-alanyl-D-alanine carboxypeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D PAM18_4170 pbpG; D-alanyl-D-alanine endopeptidase K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-] D PAM18_0377 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D PAM18_2109 putative ErfK/YbiS/YcfS/YnhG family protein K16291 erfK; L,D-transpeptidase ErfK/SrfK D PAM18_1157 hypothetical protein K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D PAM18_1493 putative lipoprotein K19303 mepH; murein DD-endopeptidase [EC:3.4.-.-] D PAM18_5679 hypothetical protein K21472 lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-] D PAM18_1940 putative soluble lytic transglycosylase K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D PAM18_3811 putative membrane-bound lytic murein transglycosylase A K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29] D PAM18_4535 mltB1; murein hydrolase B K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29] D PAM18_0939 sltB1; soluble lytic transglycosylase B K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29] D PAM18_0947 putative murein transglycosylase K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29] D PAM18_3232 mltD; membrane-bound lytic murein transglycosylase D precursor K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29] D PAM18_1180 putative periplasmic binding transport protein K18691 mltF; peptidoglycan lytic transglycosylase F [EC:4.2.2.29] D PAM18_1998 putative aminodeoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] D PAM18_4576 putative rplA family protein K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D PAM18_0940 putative lipoprotein, rlpA family K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D PAM18_5058 amiB; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D PAM18_5660 amiA; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D PAM18_5606 ampDh2; AmpDh2 K11066 amiD; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D PAM18_4613 ampD; N-acetyl-anhydromuranmyl-L-alanine amidase K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28] C 01004 Lipid biosynthesis proteins [BR:paf01004] D PAM18_1993 fabD; malonyl-CoA-[acyl-carrier-protein] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D PAM18_3954 putative 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D PAM18_1632 fabH2; 3-oxoacyl-(acyl carrier protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D PAM18_5291 putative beta-ketoacyl synthase K18473 fabY; acetoacetyl-[acyl-carrier protein] synthase [EC:2.3.1.180] D PAM18_3438 fabB; 3-oxoacyl-(acyl carrier protein) synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D PAM18_0100 3-oxoacyl-(acyl carrier protein) synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D PAM18_3535 fabF2; 3-oxoacyl-(acyl carrier protein) synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D PAM18_1996 fabF1; 3-oxoacyl-(acyl carrier protein) synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D PAM18_4480 fabG; 3-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PAM18_3661 short chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PAM18_0182 fabG; 3-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PAM18_1994 fabG; 3-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PAM18_0851 3-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PAM18_4895 fabG; 3-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PAM18_5646 putative short-chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PAM18_3437 fabA; 3-hydroxydecanoyl-(acyl carrier protein) dehydratase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14] D PAM18_1301 fabZ; (3R)-hydroxymyristoyl-ACP dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D PAM18_3238 fabI; NADH-dependent enoyl-ACP reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D PAM18_2011 trans-2-enoyl-CoA reductase K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44] D PAM18_0473 putative thioesterase K17362 ACOT13; acyl-coenzyme A thioesterase 13 [EC:3.1.2.-] D PAM18_2107 tesA; acyl-CoA thioesterase I precursor K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D PAM18_0998 tesB; acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-] D PAM18_5491 putative long-chain acyl-CoA thioester hydrolase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-] D PAM18_0281 desA; delta-9 fatty acid desaturase, DesA K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1] D PAM18_5000 desB; acyl-CoA delta-9-desaturase, DesB K22769 desA3; NADPH-dependent stearoyl-CoA 9-desaturase [EC:1.14.19.-] D PAM18_4841 acsB; acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PAM18_4152 acsA; acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PAM18_2483 putative AMP-binding enzyme K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PAM18_1417 putative acetyl-coa synthetase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17] D PAM18_3048 acetoacetyl-CoA synthetase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16] D PAM18_4030 pauA; pimeloyl-CoA synthetase K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13] D PAM18_5090 putative acyl-CoA synthetase K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13] D PAM18_2070 atuH; acyl-CoA synthetase K13776 atuH; citronellyl-CoA synthetase [EC:6.2.1.-] D PAM18_1668 fadD2; acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D PAM18_1669 fadD1; acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D PAM18_3430 putative AMP-binding enzyme K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D PAM18_2481 AMP-binding domain protein K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D PAM18_1078 AMP-binding domain protein K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D PAM18_1273 plsB; glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] D PAM18_1992 plsX; putative glycerol-3-phosphate acyltransferase PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D PAM18_0582 putative glycerol-3-phosphate acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D PAM18_0005 lptA; lysophosphatidic acid acyltransferase, LptA K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins [BR:paf01008] D PAM18_2382 PhlD K15431 phlD; phloroglucinol synthase [EC:2.3.1.253] D PAM18_2630 putative MbtH-like protein K05375 mbtH; MbtH protein D PAM18_2735 putative non-ribosomal peptide synthetase K25233 ambB; L-alanine---[L-alanyl-carrier protein] ligase [EC:6.2.1.67] D PAM18_2738 putative non-ribosomal peptide synthetase K25234 ambE; L-glutamate---[L-glutamyl-carrier protein] ligase [EC:6.2.1.68] D PAM18_3868 pcpS; PcpS K02362 entD; enterobactin synthetase component D [EC:6.3.2.14 2.7.8.-] D PAM18_0709 pchD; pyochelin biosynthesis protein PchD K12238 pchD; salicylate---[aryl-carrier protein] ligase [EC:6.2.1.61] D PAM18_0711 pchE; dihydroaeruginoic acid synthetase K12239 pchE; L-cysteine---[L-cysteinyl-carrier protein] ligase PchE [EC:6.2.1.69] D PAM18_0712 pchF; pyochelin synthetase K12240 pchF; L-cysteine---[L-cysteinyl-carrier protein] ligase PchF [EC:6.2.1.69] D PAM18_2383 pltM; pltM K14257 ctcP; tetracycline 7-halogenase / FADH2 O2-dependent halogenase [EC:1.14.19.49 1.14.19.-] D PAM18_2389 pltD; putative halogenase K14257 ctcP; tetracycline 7-halogenase / FADH2 O2-dependent halogenase [EC:1.14.19.49 1.14.19.-] D PAM18_0713 pchG; pyochelin biosynthetic protein PchG K12241 pchG; pyochelin biosynthesis protein PchG D PAM18_0708 pchC; pyochelin biosynthetic protein PchC K12242 pchC; pyochelin biosynthesis protein PchC C 01006 Prenyltransferases [BR:paf01006] D PAM18_0897 ispA; geranyltranstransferase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D PAM18_4662 ispB; octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D PAM18_1294 uppS; undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D PAM18_5056 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D PAM18_5478 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D PAM18_0115 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D PAM18_3581 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] C 01007 Amino acid related enzymes [BR:paf01007] D PAM18_1829 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D PAM18_3252 glnS; glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D PAM18_4831 glutamyl-Q tRNA(Asp) synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D PAM18_0649 tyrZ; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D PAM18_4530 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D PAM18_3251 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D PAM18_5166 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D PAM18_1483 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D PAM18_4653 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D PAM18_1104 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D PAM18_0952 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D PAM18_1246 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D PAM18_4074 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D PAM18_1136 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D PAM18_0009 glyQ; glycyl-tRNA synthetase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D PAM18_0008 glyS; glycyl-tRNA synthetase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D PAM18_2363 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D PAM18_4081 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D PAM18_2229 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D PAM18_4136 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D PAM18_2233 pheS; phenylalanyl-tRNA synthetase, alpha-subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D PAM18_2234 pheT; phenylalanyl-tRNA synthetase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D PAM18_4169 phhC; aromatic amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D PAM18_2135 aminotransferase AlaT K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D PAM18_4822 aminotransferase K14261 alaC; alanine-synthesizing transaminase [EC:2.6.1.-] D PAM18_1824 aromatic amino acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D PAM18_1140 putative aminotransferase K14287 ybdL; methionine transaminase [EC:2.6.1.88] D PAM18_5087 aruH; Arginine:Pyruvate Transaminase, AruH K12252 aruH; arginine:pyruvate transaminase [EC:2.6.1.84] D PAM18_1287 succinyldiaminopimelate transaminase K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17] D PAM18_1807 hisC2; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D PAM18_4538 hisC1; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D PAM18_2507 putative aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D PAM18_0500 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D PAM18_0134 beta alanine--pyruvate transaminase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D PAM18_5433 omega amino acid--pyruvate transaminase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D PAM18_0261 gabT; 4-aminobutyrate aminotransferase K14268 davT; 5-aminovalerate/4-aminobutyrate aminotransferase [EC:2.6.1.48 2.6.1.19] D PAM18_0530 putative class III pyridoxal phosphate-dependent aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D PAM18_4144 aruC; bifunctional succinylornithine transaminase/acetylornithine aminotransferase K00840 astC; succinylornithine aminotransferase [EC:2.6.1.81] D PAM18_2629 pvdH; diaminobutyrate--2-oxoglutarate aminotransferase K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76] D PAM18_0294 spuC; putative aminotransferase K12256 spuC; putrescine---pyruvate transaminase [EC:2.6.1.113] D PAM18_0217 putative aminotransferase K12256 spuC; putrescine---pyruvate transaminase [EC:2.6.1.113] D PAM18_0420 bioA; adenosylmethionine--8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D PAM18_0852 aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D PAM18_0962 hemL; glutamate-1-semialdehyde aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D PAM18_5645 aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D PAM18_5127 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D PAM18_3593 phnW; 2-aminoethylphosphonate--pyruvate transaminase K03430 phnW; 2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37] D PAM18_1805 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D PAM18_1434 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins [BR:paf00194] D PAM18_5681 atpC; F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D PAM18_5682 atpD; F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D PAM18_5683 atpG; F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D PAM18_5684 atpA; F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D PAM18_5685 atpH; F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D PAM18_5686 atpF; F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b D PAM18_5687 atpE; F0F1 ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c D PAM18_5688 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a D PAM18_5689 atpI; F0F1 ATP synthase subunit I K02116 atpI; ATP synthase protein I B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:paf03000] D PAM18_0819 putative transcriptional regulator K02508 hpaA; AraC family transcriptional regulator, 4-hydroxyphenylacetate 3-monooxygenase operon regulatory protein D PAM18_0416 chpD; putative transcriptional regulator K06599 chpD; AraC family transcriptional regulator, chemosensory pili system protein ChpD D PAM18_0710 pchR; transcriptional regulator PchR K12243 pchR; AraC family transcriptional regulator, transcriptional activator of the genes for pyochelin and ferripyochelin receptors D PAM18_0244 putative transcriptional regulator K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA D PAM18_0564 putative transcriptional regulator K18991 mtrA; AraC family transcriptional regulator, activator of mtrCDE D PAM18_2709 putative transcriptional regulator K18991 mtrA; AraC family transcriptional regulator, activator of mtrCDE D PAM18_3333 exsA; transcriptional regulator ExsA K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA D PAM18_1042 putative transcriptional regulator K07506 K07506; AraC family transcriptional regulator D PAM18_2276 putative transcriptional regulator K07506 K07506; AraC family transcriptional regulator D PAM18_2925 ada; O6-methylguanine-DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D PAM18_1389 putative methylated-DNA--protein-cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D PAM18_4146 argR; transcriptional regulator ArgR K21825 argR; AraC family transcriptional regulator, L-arginine-responsive activator D PAM18_5500 putative transcriptional regulator K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator D PAM18_0753 putative transcriptional regulator K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator D PAM18_3849 putative transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D PAM18_1093 putative transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D PAM18_5414 putative transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D PAM18_2658 putative transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D PAM18_4254 putative transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D PAM18_5025 putative transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D PAM18_0153 pcaQ; transcriptional regulator PcaQ K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator D PAM18_1398 metR; transcriptional regulator MetR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D PAM18_5464 putative transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D PAM18_4454 iciA; chromosome replication initiation inhibitor protein K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D PAM18_2990 cynR; DNA-binding transcriptional regulator CynR K11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator D PAM18_3292 cysB; transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D PAM18_0212 putative transcriptional regulator K13928 mdcR; LysR family transcriptional regulator, malonate utilization transcriptional regulator D PAM18_2041 putative transcriptional regulator K14057 abgR; LysR family transcriptional regulator, regulator of abg operon D PAM18_3047 putative transcriptional regulator K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator D PAM18_0830 ampR; transcriptional regulator AmpR K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase D PAM18_2547 mexT; transcriptional regulator MexT K18297 mexT; LysR family transcriptional regulator, mexEF-oprN operon transcriptional activator D PAM18_2988 putative transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC D PAM18_4045 mvfR; Transcriptional regulator MvfR K19735 mvfR; LysR family transcriptional regulator, quorum-sensing system regulator MvfR D PAM18_5548 putative transcriptional regulator K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT D PAM18_0135 putative transcriptional regulator K21699 bauR; LysR family transcriptional regulator, transcriptional activator for bauABCD operon D PAM18_5557 putative transcriptional regulator K21711 pycR; LysR family transcriptional regulator, putative pyruvate carboxylase regulator D PAM18_2529 catR; transcriptional regulator CatR K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes D PAM18_2384 pltR; PltR K22711 pltR; LysR family transcriptional regulator, pyoluteorin biosynthesis regulator D PAM18_3189 putative transcriptional regulator K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator D PAM18_0038 trpI; transcriptional regulator TrpI K27042 trpI; LysR family transcriptional regulator, trpBA operon transcriptional activator D PAM18_3641 putative transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D PAM18_1402 glpR; glycerol-3-phosphate regulon repressor K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D PAM18_3096 rbsR; ribose operon repressor RbsR K02529 galR; LacI family transcriptional regulator, galactose operon repressor D PAM18_2781 ptxS; transcriptional regulator PtxS K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor D PAM18_1423 fruR; DNA-binding transcriptional regulator FruR K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor D PAM18_2721 gntR; transcriptional regulator GntR K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D PAM18_1586 putative transcriptional regulator K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein D PAM18_5219 hutC; histidine utilization repressor HutC K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D PAM18_1188 putative transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D PAM18_2741 putative transcriptional regulator K03710 K03710; GntR family transcriptional regulator D PAM18_4877 putative transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D PAM18_0122 putative transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D PAM18_5476 glcC; DNA-binding transcriptional regulator GlcC K11474 glcC; GntR family transcriptional regulator, glc operon transcriptional activator D PAM18_0263 putative transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D PAM18_0772 putative transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D PAM18_5551 putative transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D PAM18_5017 putative transcriptional regulator K11475 vanR; GntR family transcriptional regulator, vanillate catabolism transcriptional regulator D PAM18_5494 betI; transcriptional regulator BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes D PAM18_0167 putative transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator D PAM18_0436 putative transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator D PAM18_3627 putative transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator D PAM18_3178 putative transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator D PAM18_2839 putative transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D PAM18_4201 putative transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D PAM18_4942 putative transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D PAM18_2198 putative transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D PAM18_3792 putative transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D PAM18_1268 putative transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor D PAM18_3024 putative transcriptional regulator K18129 mexZ; TetR/AcrR family transcriptional regulator, mexXY operon repressor D PAM18_1225 putative transcriptional regulator K18130 nalC; TetR/AcrR family transcriptional regulator, transcriptional repressor NalC D PAM18_1411 putative transcriptional regulator K18135 nalD; TetR/AcrR family transcriptional regulator, repressor of the mexAB-oprM multidrug resistance operon D PAM18_4694 nfxB; transcriptional regulator NfxB K18294 nfxB; TetR/AcrR family transcriptional regulator, mexCD-oprJ operon repressor D PAM18_5002 desT; DesT K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator D PAM18_2078 atuR; putative repressor of atu genes K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator D PAM18_2393 pltZ; PltZ K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity D PAM18_0975 putative transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D PAM18_4893 putative transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D PAM18_2416 putative transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D PAM18_5428 lrp; leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D PAM18_4599 putative transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D PAM18_2794 bkdR; transcriptional regulator BkdR K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D PAM18_3016 putative transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator D PAM18_3701 lasR; transcriptional regulator LasR K18304 lasR; LuxR family transcriptional regulator, quorum-sensing system regulator LasR D PAM18_1488 rhlR; transcriptional regulator RhlR K18099 rhlR; LuxR family transcriptional regulator, quorum-sensing system regulator RhlR D PAM18_3896 putative transcriptional regulator K18098 bjaR1; LuxR family transcriptional regulator, quorum-sensing system regulator BjaR1 D PAM18_3287 putative transcriptional regulator K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein D PAM18_1019 putative transcriptional regulator K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein D PAM18_0249 putative transcriptional regulator K03712 marR; MarR family transcriptional regulator, multiple antibiotic resistance protein MarR D PAM18_1624 putative transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D PAM18_0424 mexR; multidrug resistance operon repressor MexR K18131 mexR; MarR family transcriptional regulator, repressor of the mexAB-oprM multidrug resistance operon D PAM18_3444 putative transcriptional regulator K22296 nicR; MarR family transcriptional regulator, lower aerobic nicotinate degradation pathway regulator D PAM18_2114 putative transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D PAM18_2138 putative transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D PAM18_4886 putative transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D PAM18_2767 putative transcriptional regulator K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR D PAM18_4756 putative transcriptional regulator K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator D PAM18_4872 fur; ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D PAM18_2657 hypothetical protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D PAM18_5620 np20; transcriptional regulator np20 K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D PAM18_0232 putative transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D PAM18_0156 pcaR; transcriptional regulator PcaR K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein D PAM18_0633 vfr; cAMP-regulatory protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D PAM18_0270 putative transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D PAM18_3505 anr; transcriptional regulator Anr K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D PAM18_0526 dnr; transcriptional regulator Dnr K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator D PAM18_1123 putative Rrf2 family protein K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D PAM18_2763 arsR; ArsR protein K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D PAM18_5559 putative transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D PAM18_1788 DNA-binding transcriptional regulator HexR K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D PAM18_0650 biotin--protein ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D PAM18_4964 fis; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D PAM18_3937 fleQ; transcriptional regulator FleQ K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D PAM18_0790 acoR; transcriptional regulator AcoR K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D PAM18_0919 putative transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D PAM18_2682 putative transcriptional regulator K11917 sfa3; sigma-54 dependent transcriptional regulator D PAM18_3383 putative transcriptional regulator K11914 sfa2; sigma-54 dependent transcriptional regulator D PAM18_2308 anaerobic nitric oxide reductase transcription regulator K12266 norR; anaerobic nitric oxide reductase transcription regulator D PAM18_3995 hypothetical protein K02647 cdaR; carbohydrate diacid regulator D PAM18_3837 putative transcriptional regulator K06714 rocR; arginine utilization regulatory protein D PAM18_0486 putative molybdenum transport regulator K02019 modE; molybdate transport system regulatory protein D PAM18_1074 hypothetical protein K21829 dauR; D-arginine utilization repressor D PAM18_2178 putative transcriptional regulator K07727 K07727; putative transcriptional regulator D PAM18_5523 putative transcriptional regulator K07727 K07727; putative transcriptional regulator D PAM18_0863 putative transcriptional regulator K07729 K07729; putative transcriptional regulator D PAM18_4256 putA; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D PAM18_1576 nosR; regulatory protein NosR K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator D PAM18_4183 bolA; morphogene protein BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D PAM18_5690 spoOJ; chromosome partitioning protein Spo0J K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D PAM18_1335 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D PAM18_4166 phhR; transcriptional regulator PhhR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D PAM18_2584 putative transcriptional regulator K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D PAM18_4039 Putative glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor D PAM18_5394 rnk; nucleoside diphosphate kinase regulator K06140 rnk; regulator of nucleoside diphosphate kinase D PAM18_0403 pyrR; bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D PAM18_0755 putative transcriptional regulator K07734 paiB; transcriptional regulator D PAM18_0405 hypothetical protein K07735 algH; putative transcriptional regulator D PAM18_4830 dksA; suppressor protein DksA K06204 dksA; RNA polymerase-binding transcription factor D PAM18_5658 putative C4-type zinc finger protein, DksA/TraR family K06204 dksA; RNA polymerase-binding transcription factor D PAM18_0883 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR D PAM18_4674 rtcR; transcriptional regulator RtcR K14414 rtcR; transcriptional regulatory protein RtcR D PAM18_4512 cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ C 03021 Transcription machinery [BR:paf03021] D PAM18_3176 putative DNA helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D PAM18_0692 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D PAM18_0660 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D PAM18_0661 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D PAM18_5457 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D PAM18_0577 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D PAM18_1324 rpoS; RNA polymerase sigma factor RpoS K03087 rpoS; RNA polymerase nonessential primary-like sigma factor D PAM18_4276 algU; RNA polymerase sigma factor AlgU K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D PAM18_1683 putative sigma-70 factor, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D PAM18_2066 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D PAM18_3551 putative sigma-70 factor, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D PAM18_1041 RNA polymerase sigma factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily D PAM18_2994 RNA polymerase sigma factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily D PAM18_0471 RNA polymerase sigma factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily D PAM18_3129 putative sigma-70 factor, ECF subfamily K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily D PAM18_2571 foxI; ECF sigma factor FoxI K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily D PAM18_0375 rpoH; RNA polymerase factor sigma-32 K03089 rpoH; RNA polymerase sigma-32 factor D PAM18_4553 rpoN; RNA polymerase factor sigma-54 K03092 rpoN; RNA polymerase sigma-54 factor D PAM18_3676 fliA; flagellar biosynthesis sigma factor K02405 fliA; RNA polymerase sigma factor FliA D PAM18_1657 hepA; ATP-dependent helicase HepA K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-] D PAM18_4853 nusA; transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA D PAM18_0888 nusB; transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB D PAM18_0655 nusG; transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG D PAM18_4519 sspA; stringent starvation protein A K03599 sspA; stringent starvation protein A D PAM18_4518 sspB; ClpXP protease specificity-enhancing factor K03600 sspB; stringent starvation protein B D PAM18_2165 putative two-component response regulator K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3] D PAM18_4275 mucA; anti-sigma factor MucA K03597 rseA; sigma-E factor negative regulatory protein RseA D PAM18_4274 mucB; negative regulator for alginate biosynthesis MucB K03598 rseB; sigma-E factor negative regulatory protein RseB D PAM18_4273 mucC; positive regulator for alginate biosynthesis MucC K03803 rseC; sigma-E factor negative regulatory protein RseC D PAM18_4830 dksA; suppressor protein DksA K06204 dksA; RNA polymerase-binding transcription factor D PAM18_5658 putative C4-type zinc finger protein, DksA/TraR family K06204 dksA; RNA polymerase-binding transcription factor D PAM18_4863 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA D PAM18_2104 greB; transcription elongation factor GreB K04760 greB; transcription elongation factor GreB D PAM18_5358 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D PAM18_4099 hypothetical protein K19000 rof; Rho-binding antiterminator C 03019 Messenger RNA biogenesis [BR:paf03019] D PAM18_1985 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12] D PAM18_4568 cafA; cytoplasmic axial filament protein K08301 rng; ribonuclease G [EC:3.1.26.-] D PAM18_4268 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D PAM18_5048 rnr; exoribonuclease RNase R K12573 rnr; ribonuclease R [EC:3.1.13.1] D PAM18_5062 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D PAM18_1077 rhl; ATP-dependent RNA helicase RhlB K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7] D PAM18_0428 putative ATP-dependent RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D PAM18_0990 putative ATP-dependent RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D PAM18_2123 putative ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D PAM18_1621 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D PAM18_1311 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D PAM18_4848 pnp; polynucleotide phosphorylase/polyadenylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D PAM18_5358 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D PAM18_4869 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D PAM18_4476 groEL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D PAM18_5055 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein D PAM18_5361 ppk; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D PAM18_2606 hypothetical protein K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D PAM18_0142 hypothetical protein K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D PAM18_4835 pcnB; poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] D PAM18_0334 ygdP; dinucleoside polyphosphate hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D PAM18_2435 regulatory protein K03563 csrA; carbon storage regulator D PAM18_4134 rsmA; carbon storage regulator K03563 csrA; carbon storage regulator D PAM18_3274 panE2; ribonuclease activity regulator protein RraA K02553 rraA; regulator of ribonuclease activity A D PAM18_4556 hypothetical protein K06958 rapZ; RNase adapter protein RapZ D PAM18_1671 putative ATP-dependent helicase K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6] D PAM18_0979 putative ATP-dependent helicase K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6] C 03041 Spliceosome C 03011 Ribosome [BR:paf03011] D PAM18_1810 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D PAM18_1290 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D PAM18_0673 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D PAM18_0691 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D PAM18_0684 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D PAM18_5046 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D PAM18_0663 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D PAM18_0681 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D PAM18_4523 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D PAM18_0666 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D PAM18_0690 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D PAM18_0662 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D PAM18_0689 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D PAM18_0680 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D PAM18_4849 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D PAM18_1200 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D PAM18_0676 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D PAM18_5045 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D PAM18_0671 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D PAM18_4656 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D PAM18_0580 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D PAM18_0657 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D PAM18_0670 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D PAM18_0667 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D PAM18_0668 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D PAM18_0679 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D PAM18_0682 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D PAM18_5043 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D PAM18_0658 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D PAM18_0656 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D PAM18_0659 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D PAM18_4524 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D PAM18_0677 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D PAM18_0686 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D PAM18_0674 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D PAM18_0693 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D PAM18_0683 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D PAM18_1203 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D PAM18_2232 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D PAM18_4661 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D PAM18_0672 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D PAM18_0669 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D PAM18_0678 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D PAM18_4660 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D PAM18_5436 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D PAM18_0675 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D PAM18_0685 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D PAM18_1384 rpmE2; 50S ribosomal protein L31 type B K02909 RP-L31; large subunit ribosomal protein L31 D PAM18_5164 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D PAM18_1991 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D PAM18_5435 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D PAM18_5698 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D PAM18_2231 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D PAM18_1385 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D PAM18_0688 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D PAM18_4768 50S ribosomal protein L25/general stress protein Ctc K02897 RP-L25; large subunit ribosomal protein L25 D PAM18_R008 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D PAM18_R051 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D PAM18_R076 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D PAM18_R064 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D PAM18_R004 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D PAM18_R055 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D PAM18_R066 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D PAM18_R080 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D PAM18_R007 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D PAM18_R052 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D PAM18_R077 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D PAM18_R065 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:paf03009] D PAM18_4268 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D PAM18_4889 putative serine/threonine protein kinase K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D PAM18_5062 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D PAM18_4267 era; GTP-binding protein Era K03595 era; GTPase D PAM18_4659 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-] D PAM18_4830 dksA; suppressor protein DksA K06204 dksA; RNA polymerase-binding transcription factor D PAM18_5658 putative C4-type zinc finger protein, DksA/TraR family K06204 dksA; RNA polymerase-binding transcription factor D PAM18_4853 nusA; transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA D PAM18_0888 nusB; transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB D PAM18_0655 nusG; transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG D PAM18_4308 putative pseudouridylate synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D PAM18_0593 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D PAM18_0017 putative tRNA and rRNA cytosine-C5-methylase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D PAM18_4722 putative ribosomal RNA small subunit methyltransferase C K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D PAM18_0369 putative methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D PAM18_0419 16S ribosomal RNA methyltransferase RsmE K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D PAM18_5692 gidB; 16S rRNA methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D PAM18_4511 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D PAM18_4513 putative methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D PAM18_1266 hypothetical protein K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242] D PAM18_3872 rrmA; rRNA methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187] D PAM18_5047 putative rRNA methylase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D PAM18_4860 ftsJ; cell division protein FtsJ K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D PAM18_1098 putative SAM-dependent methyltransferase K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181] D PAM18_4711 putative nucleotide methyltransferase K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174] D PAM18_0936 rRNA large subunit methyltransferase K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D PAM18_3724 putative SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D PAM18_0352 putative SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D PAM18_5134 hypothetical protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D PAM18_1912 rlmL; 23S rRNA m(2)G2445 methyltransferase K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173] D PAM18_3485 putative RNA 2'-O-ribose methyltransferase K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186] D PAM18_1132 putative Fe-S-cluster redox enzyme K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D PAM18_3203 putative Fe-S-cluster redox enzyme K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D PAM18_4106 rumA; 23S rRNA 5-methyluridine methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D PAM18_1725 rluA; pseudouridine synthase RluA K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D PAM18_3001 putative pseudouridylate synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D PAM18_1793 putative pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D PAM18_1986 rluC; ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D PAM18_4636 rluD; pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D PAM18_0972 putative pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] D PAM18_3924 hypothetical protein K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] D PAM18_4784 rimI; peptide n-acetyltransferase RimI K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D PAM18_3111 rimJ; ribosomal protein alanine acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267] D PAM18_5316 rimK; ribosomal protein S6 modification protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-] D PAM18_1723 putative ribosomal-protein-serine acetyltransferase K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-] D PAM18_1201 rimM; 16S rRNA-processing protein RimM K02860 rimM; 16S rRNA processing protein RimM D PAM18_4123 hypothetical protein K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] D PAM18_3113 hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor D PAM18_4961 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] D PAM18_3369 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298] D PAM18_2345 hypothetical protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] D PAM18_1985 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12] D PAM18_4568 cafA; cytoplasmic axial filament protein K08301 rng; ribonuclease G [EC:3.1.26.-] D PAM18_0404 yqgF; Holliday junction resolvase-like protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D PAM18_0453 dbpA; ATP-dependent RNA helicase DbpA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6] D PAM18_2123 putative ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D PAM18_5063 ribosome-associated GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D PAM18_1139 engA; GTP-binding protein EngA K03977 engA; GTPase D PAM18_5054 putative GTP-binding protein K03665 hflX; GTPase D PAM18_0022 putative translation factor K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D PAM18_5458 spoT; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D PAM18_4851 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A D PAM18_4854 hypothetical protein K09748 rimP; ribosome maturation factor RimP D PAM18_0935 hypothetical protein K09710 ybeB; ribosome-associated protein D PAM18_0957 putative metalloprotease K07042 ybeY; probable rRNA maturation factor D PAM18_4861 putative RNA-binding protein K07574 yhbY; RNA-binding protein D PAM18_4564 hypothetical protein K09889 yjgA; ribosome-associated protein D PAM18_1911 rmf; ribosome modulation factor K03812 rmf; ribosome modulation factor D PAM18_4554 putative ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor D PAM18_4770 GTP-dependent nucleic acid-binding protein EngD K06942 ychF; ribosome-binding ATPase D PAM18_1990 hypothetical protein K07040 yceD; DUF177 domain-containing protein C 03016 Transfer RNA biogenesis [BR:paf03016] D PAM18_0585 cca; multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] D PAM18_4676 hypothetical protein K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8] D PAM18_1829 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D PAM18_4081 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D PAM18_4653 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D PAM18_0952 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D PAM18_1483 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D PAM18_3252 glnS; glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D PAM18_5166 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D PAM18_1246 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D PAM18_4074 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D PAM18_4136 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D PAM18_2229 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D PAM18_2363 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D PAM18_3251 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D PAM18_1104 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D PAM18_1136 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D PAM18_2233 pheS; phenylalanyl-tRNA synthetase, alpha-subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D PAM18_2234 pheT; phenylalanyl-tRNA synthetase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D PAM18_0649 tyrZ; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D PAM18_4530 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D PAM18_5194 D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D PAM18_2937 hypothetical protein K07050 AARSD1; misacylated tRNA(Ala) deacylase [EC:3.1.1.-] D PAM18_0637 putative HIT family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D PAM18_1673 putative HIT family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D PAM18_3597 putative HIT family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D PAM18_0381 trmB; tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D PAM18_1579 hypothetical protein K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-] D PAM18_1849 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D PAM18_4850 truB; tRNA pseudouridine 55 synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D PAM18_1320 truD; tRNA pseudouridine synthase D K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27] D PAM18_1124 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D PAM18_2982 putative pyridoxal-phosphate dependent enzyme K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D PAM18_0022 putative translation factor K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D PAM18_5056 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D PAM18_5695 trmE; tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D PAM18_5693 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D PAM18_3405 selD; selenophosphate synthetase K01008 selD; selenide, water dikinase [EC:2.7.9.3] D PAM18_5293 cysQ; CysQ protein K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D PAM18_5697 rnpA; ribonuclease P K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D PAM18_1458 rnt; ribonuclease T K03683 rnt; ribonuclease T [EC:3.1.13.-] D PAM18_5454 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56] D PAM18_3609 rnd; ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5] D PAM18_2102 ligT; 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58] D PAM18_0055 RNA 3'-phosphotransferase-like protein K07559 kptA; putative RNA 2'-phosphotransferase [EC:2.7.1.-] D PAM18_4688 putative ABC transporter ATP-binding protein K06020 ettA; energy-dependent translational throttle protein EttA D PAM18_0009 glyQ; glycyl-tRNA synthetase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D PAM18_0008 glyS; glycyl-tRNA synthetase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D PAM18_4831 glutamyl-Q tRNA(Asp) synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D PAM18_1405 hypothetical protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-] D PAM18_3201 hypothetical protein K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-] D PAM18_1177 putative Cytosine/adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D PAM18_2168 tRNA-dihydrouridine synthase A K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-] D PAM18_4963 putative tRNA-dihydrouridine synthase K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D PAM18_1834 putative tRNA-dihydrouridine synthase K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-] D PAM18_0959 hypothetical protein K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D PAM18_3010 putative methylase K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-] D PAM18_4263 hypothetical protein K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-] D PAM18_4264 hypothetical protein K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-] D PAM18_4899 putative methyltransferase K06219 smtA; tRNA 5-carboxymethoxyuridine methyltransferase [EC:2.1.1.-] D PAM18_4827 trmA; tRNA (uracil-5-)-methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35] D PAM18_1202 trmD; tRNA (guanine-N(1)-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D PAM18_1121 putative methyltransferase K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200] D PAM18_5240 putative rRNA methylase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] D PAM18_1725 rluA; pseudouridine synthase RluA K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D PAM18_3001 putative pseudouridylate synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D PAM18_2349 mnmA; tRNA-specific 2-thiouridylase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D PAM18_3841 putative ATPase of the PP-loop superfamily K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA D PAM18_3484 sulfur transfer protein SirA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D PAM18_4042 hypothetical protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D PAM18_2368 putative DsrH family protein K07237 tusB; tRNA 2-thiouridine synthesizing protein B D PAM18_2369 sulfur relay protein TusC K07236 tusC; tRNA 2-thiouridine synthesizing protein C D PAM18_2370 sulfur transfer complex subunit TusD K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-] D PAM18_2367 putative desulfoviridin gamma subunit K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-] D PAM18_1126 iscA; putative iron-binding protein IscA K13628 iscA; iron-sulfur cluster assembly protein D PAM18_4280 hypothetical protein K06980 ygfZ; tRNA-modifying protein YgfZ D PAM18_3256 putative tRNA-(ms(2)io(6)a)-hydroxylase K06169 miaE; tRNA 2-(methylsulfanyl)-N6-isopentenyladenosine37 hydroxylase [EC:1.14.99.69] D PAM18_1114 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D PAM18_4061 hypothetical protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D PAM18_2307 putative 6-pyruvoyl tetrahydrobiopterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D PAM18_4062 putative radical activating enzyme K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D PAM18_2157 queF; 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D PAM18_5061 putative iron-sulfur cluster-binding protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6] D PAM18_3404 tRNA 2-selenouridine synthase K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3] D PAM18_1115 tgt; queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D PAM18_5232 thiI; thiamine biosynthesis protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D PAM18_1308 putative cell cycle protein K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D PAM18_1261 putative protease with chaperone activity K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D PAM18_0581 gcp; O-sialoglycoprotein endopeptidase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D PAM18_5059 putative ATPase K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D PAM18_3869 hypothetical protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase D PAM18_5048 rnr; exoribonuclease RNase R K12573 rnr; ribonuclease R [EC:3.1.13.1] D PAM18_4848 pnp; polynucleotide phosphorylase/polyadenylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:paf03012] D PAM18_4951 translation initiation factor Sui1 K03113 EIF1; translation initiation factor 1 D PAM18_4852 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D PAM18_2230 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D PAM18_5371 putative ATP-binding component of ABC transporter K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 D PAM18_1291 tsf; elongation factor Ts K02357 tsf; elongation factor Ts D PAM18_0653 tufA; elongation factor Tu K02358 tuf; elongation factor Tu D PAM18_0665 tufA; elongation factor Tu K02358 tuf; elongation factor Tu D PAM18_2973 fusA2; elongation factor G K02355 fusA; elongation factor G D PAM18_0664 fusA1; elongation factor G K02355 fusA; elongation factor G D PAM18_4916 selB; selenocysteine-specific elongation factor K03833 selB; selenocysteine-specific elongation factor D PAM18_4762 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1 D PAM18_1293 frr; ribosome recycling factor K02838 frr; ribosome recycling factor D PAM18_4761 hemK; putative methyl transferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D PAM18_4769 peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D PAM18_2356 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D PAM18_2112 efp; elongation factor P K02356 efp; elongation factor P D PAM18_1245 putative peptide chain release factor 2 K02836 prfB; peptide chain release factor 2 D PAM18_1037 prfC; peptide chain release factor 3 K02837 prfC; peptide chain release factor 3 D PAM18_5591 prfH; peptide chain release factor-like protein K02839 prfH; peptide chain release factor D PAM18_0949 hypothetical protein K09890 arfA; alternative ribosome-rescue factor D PAM18_4171 peptidyl-tRNA hydrolase domain protein K15034 yaeJ; ribosome-associated protein C 03110 Chaperones and folding catalysts [BR:paf03110] D PAM18_2355 clpA; ATP-binding protease component ClpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA D PAM18_4634 clpB; ClpB protein K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB D PAM18_0458 putative ClpA/B protease ATP binding subunit K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC D PAM18_3242 clpX; ATP-dependent protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D PAM18_5169 hslU; ATP-dependent protease ATP-binding subunit HslU K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU D PAM18_3976 putative heat shock protein (hsp90 family) K04079 HSP90A; molecular chaperone HtpG D PAM18_3451 htpG; heat shock protein 90 K04079 HSP90A; molecular chaperone HtpG D PAM18_4869 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D PAM18_1128 hscA; chaperone protein HscA K04044 hscA; molecular chaperone HscA D PAM18_4985 putative heat-shock protein K04046 yegD; hypothetical chaperone protein D PAM18_4476 groEL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D PAM18_4868 dnaJ; DnaJ protein K03686 dnaJ; molecular chaperone DnaJ D PAM18_0599 putative DnaJ-like protein DjlA K05801 djlA; DnaJ like chaperone protein D PAM18_1127 hscB; co-chaperone HscB K04082 hscB; molecular chaperone HscB D PAM18_5312 hslO; Hsp33-like chaperonin K04083 hslO; molecular chaperone Hsp33 D PAM18_4870 grpE; heat shock protein GrpE K03687 GRPE; molecular chaperone GrpE D PAM18_1837 ibpA; heat-shock protein IbpA K04080 ibpA; molecular chaperone IbpA D PAM18_5314 putative heat shock protein K04762 hslR; ribosome-associated heat shock protein Hsp15 D PAM18_4477 groES; co-chaperonin GroES K04078 groES; chaperonin GroES D PAM18_4272 mucD; serine protease MucD precursor K04771 degP; serine protease Do [EC:3.4.21.107] D PAM18_4859 ftsH; cell division protein FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D PAM18_5688 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a D PAM18_2912 cupA2; chaperone CupA2 K07346 fimC; fimbrial chaperone protein D PAM18_4748 putative pili assembly chaperone K07346 fimC; fimbrial chaperone protein D PAM18_5242 secB; preprotein translocase subunit SecB K03071 secB; preprotein translocase subunit SecB D PAM18_1766 putative periplasmic inhibitor/zinc-resistance associated protein K06006 cpxP; periplasmic protein CpxP/Spy D PAM18_1153 putative membrane or periplasmic protein K09796 pccA; periplasmic copper chaperone A D PAM18_1744 ppiA; peptidyl-prolyl cis-trans isomerase A K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D PAM18_3253 ppiB; peptidyl-prolyl cis-trans isomerase B K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] D PAM18_3239 ppiD; peptidyl-prolyl cis-trans isomerase D K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8] D PAM18_1707 putative peptidyl-prolyl cis-trans isomerase, FkbP-type K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8] D PAM18_4665 fklB; peptidyl-prolyl cis-trans isomerase FklB K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8] D PAM18_5374 putative peptidyl-prolyl cis-trans isomerase, FkbP-type K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8] D PAM18_4651 putative peptidyl-prolyl cis-trans isomerase, FkbP-type K03774 slpA; FKBP-type peptidyl-prolyl cis-trans isomerase SlpA [EC:5.2.1.8] D PAM18_4203 slyD; peptidyl-prolyl cis-trans isomerase SlyD K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] D PAM18_3049 ppiC1; peptidyl-prolyl cis-trans isomerase C1 K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] D PAM18_0761 ppiC2; peptidyl-prolyl cis-trans isomerase C2 K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] D PAM18_1071 putative peptidyl-prolyl cis-trans isomerase, PpiC-type K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] D PAM18_0595 surA; peptidyl-prolyl cis-trans isomerase SurA K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8] D PAM18_2278 putative thioredoxin K03671 TXN; thioredoxin D PAM18_5359 trxA; thioredoxin K03671 TXN; thioredoxin D PAM18_0880 putative thioredoxin K05838 ybbN; putative thioredoxin D PAM18_5243 grx; glutaredoxin K03676 grxC; glutaredoxin 3 D PAM18_1453 glutaredoxin-related protein K07390 grxD; monothiol glutaredoxin D PAM18_5610 dsbA; thiol:disulfide interchange protein DsbA K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D PAM18_0539 dsbB; disulfide bond formation protein K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9] D PAM18_5376 dsbH; disulfide bond formation protein K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9] D PAM18_1208 dsbC; thiol:disulfide interchange protein DsbC K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1] D PAM18_2561 putative thiol:disulfide interchange protein K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16] D PAM18_4956 dipZ; thiol:disulfide interchange protein precursor K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16] D PAM18_3651 ccmG; cytochrome C biogenesis protein CcmG K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE D PAM18_2563 dsbG; disulfide isomerase/thiol-disulfide oxidase K03805 dsbG; thiol:disulfide interchange protein DsbG C 04131 Membrane trafficking [BR:paf04131] D PAM18_1131 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D PAM18_4724 hypothetical protein K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family D PAM18_1959 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D PAM18_1777 gapA; glyceraldehyde 3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D PAM18_3633 pykF; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D PAM18_4419 pykA; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D PAM18_3976 putative heat shock protein (hsp90 family) K04079 HSP90A; molecular chaperone HtpG D PAM18_3451 htpG; heat shock protein 90 K04079 HSP90A; molecular chaperone HtpG C 04121 Ubiquitin system [BR:paf04121] C 03051 Proteasome [BR:paf03051] D PAM18_3976 putative heat shock protein (hsp90 family) K04079 HSP90A; molecular chaperone HtpG D PAM18_3451 htpG; heat shock protein 90 K04079 HSP90A; molecular chaperone HtpG C 03032 DNA replication proteins [BR:paf03032] D PAM18_3229 rnhA; ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D PAM18_5468 putative DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha D PAM18_3240 hupB; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D PAM18_1000 putative DNA binding protein K03530 hupB; DNA-binding protein HU-beta D PAM18_2235 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha D PAM18_1811 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta D PAM18_0001 dnaA; chromosomal replication initiation protein K02313 dnaA; chromosomal replication initiator protein D PAM18_5042 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D PAM18_0578 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D PAM18_0698 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D PAM18_1306 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D PAM18_0002 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D PAM18_1106 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D PAM18_0950 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D PAM18_2000 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D PAM18_1739 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D PAM18_3228 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D PAM18_3516 dnaX; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D PAM18_1304 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D PAM18_5614 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D PAM18_3519 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D PAM18_4091 DNA replication initiation factor K10763 hda; DnaA-homolog protein D PAM18_1804 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D PAM18_0004 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D PAM18_5075 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D PAM18_5078 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D PAM18_2796 pslN; putative DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D PAM18_1949 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:paf03036] D PAM18_4268 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D PAM18_5468 putative DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha D PAM18_3240 hupB; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D PAM18_1000 putative DNA binding protein K03530 hupB; DNA-binding protein HU-beta D PAM18_2235 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha D PAM18_1811 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta D PAM18_0001 dnaA; chromosomal replication initiation protein K02313 dnaA; chromosomal replication initiator protein D PAM18_4075 putative dna-binding stress protein K04047 dps; starvation-inducible DNA-binding protein D PAM18_4964 fis; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D PAM18_5055 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein D PAM18_4454 iciA; chromosome replication initiation inhibitor protein K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D PAM18_0975 putative transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D PAM18_4893 putative transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D PAM18_2416 putative transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D PAM18_5428 lrp; leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D PAM18_4599 putative transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D PAM18_2794 bkdR; transcriptional regulator BkdR K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D PAM18_1089 nucleoid-associated protein NdpA K06899 ndpA; nucleoid-associated protein D PAM18_3521 putative chromosome segregation protein K03529 smc; chromosome segregation protein D PAM18_1773 hypothetical protein K05896 scpA; segregation and condensation protein A D PAM18_1774 putative transcriptional regulator K06024 scpB; segregation and condensation protein B D PAM18_4499 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA D PAM18_1312 putative septum formation initiator K05589 ftsB; cell division protein FtsB D PAM18_0373 ftsE; cell division protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D PAM18_4509 ftsI; penicillin-binding protein 3 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D PAM18_2768 pbpC; penicillin-binding protein 3A K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D PAM18_2360 ftsK; cell division protein FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D PAM18_4510 ftsL; cell division protein FtsL K03586 ftsL; cell division protein FtsL D PAM18_4500 ftsQ; cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ D PAM18_4504 ftsW; cell division protein FtsW K03588 ftsW; cell division protein FtsW D PAM18_0374 ftsX; cell division protein FtsX K09811 ftsX; cell division transport system permease protein D PAM18_4498 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D PAM18_3520 zipA; cell division protein ZipA K03528 zipA; cell division protein ZipA D PAM18_5345 hypothetical protein K09888 zapA; cell division protein ZapA D PAM18_5527 hypothetical protein K09888 zapA; cell division protein ZapA D PAM18_5344 hypothetical protein K09892 zapB; cell division protein ZapB D PAM18_2688 putative ATPase K06916 zapE; cell division protein ZapE D PAM18_4529 putative ATPase K06916 zapE; cell division protein ZapE D PAM18_4631 putative ATPase K06916 zapE; cell division protein ZapE D PAM18_5058 amiB; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D PAM18_5660 amiA; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D PAM18_0425 mexA; Resistance-Nodulation-Cell Division (RND) multidrug efflux membrane fusion protein MexA precursor K03585 acrA; membrane fusion protein, multidrug efflux system D PAM18_4465 putative Resistance-Nodulation-Cell Division (RND) efflux membrane fusion protein precursor K03585 acrA; membrane fusion protein, multidrug efflux system D PAM18_1728 minC; septum formation inhibitor K03610 minC; septum site-determining protein MinC D PAM18_1727 minD; cell division inhibitor MinD K03609 minD; septum site-determining protein MinD D PAM18_1726 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor D PAM18_1952 putative cell division inhibitor K13053 sulA; cell division inhibitor SulA D PAM18_4572 mreB; rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D PAM18_4571 mreC; rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC D PAM18_4570 mreD; rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD D PAM18_0938 rodA; rod shape-determining protein K05837 rodA; rod shape determining protein RodA D PAM18_3669 putative plasmid partitioning protein K03496 parA; chromosome partitioning protein D PAM18_5143 putative ATPase nvolved in chromosome partitioning K03496 parA; chromosome partitioning protein D PAM18_5691 soj; chromosome partitioning protein Soj K03496 parA; chromosome partitioning protein D PAM18_5690 spoOJ; chromosome partitioning protein Spo0J K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D PAM18_1335 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D PAM18_5075 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D PAM18_5078 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D PAM18_5693 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D PAM18_5692 gidB; 16S rRNA methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D PAM18_5401 xerC; site-specific tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC D PAM18_1207 xerD; site-specific tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD D PAM18_1484 hypothetical protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D PAM18_5613 engB; ribosome biogenesis GTP-binding protein YsxC K03978 engB; GTP-binding protein C 03400 DNA repair and recombination proteins [BR:paf03400] D PAM18_4053 ogt; methylated-DNA--protein-cysteinemethyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D PAM18_4757 phr; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D PAM18_4289 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D PAM18_0930 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] D PAM18_5263 mutY; A/G specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D PAM18_1473 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D PAM18_3176 putative DNA helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D PAM18_1792 putative 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PAM18_4491 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PAM18_2195 putative pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PAM18_1495 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PAM18_5027 putative ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PAM18_5441 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D PAM18_2925 ada; O6-methylguanine-DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D PAM18_1389 putative methylated-DNA--protein-cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D PAM18_3360 alkA; DNA-3-methyladenine glycosidase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D PAM18_0010 tag; DNA-3-methyladenine glycosidase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D PAM18_0355 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D PAM18_0765 putative nuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D PAM18_2493 xthA; exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D PAM18_5452 crc; catabolite repression control protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D PAM18_1221 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D PAM18_3519 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D PAM18_5614 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D PAM18_0696 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D PAM18_1825 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D PAM18_2408 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C D PAM18_5565 uvrD; DNA-dependent helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D PAM18_0660 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D PAM18_0661 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D PAM18_0692 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D PAM18_5457 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D PAM18_1958 mfd; transcription-repair coupling protein Mfd K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D PAM18_1326 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D PAM18_5057 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D PAM18_4406 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] D PAM18_1162 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D PAM18_0898 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D PAM18_1306 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D PAM18_0002 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D PAM18_1106 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D PAM18_0950 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D PAM18_2000 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D PAM18_1739 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D PAM18_3228 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D PAM18_3516 dnaX; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D PAM18_0698 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D PAM18_4373 recB; exodeoxyribonuclease V beta chain K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] D PAM18_4374 recC; exodeoxyribonuclease V gamma chain K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] D PAM18_4372 recD; exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D PAM18_1368 recA; recombinase A K03553 recA; recombination protein RecA D PAM18_4071 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D PAM18_4070 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D PAM18_4072 ruvC; Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D PAM18_5165 priA; primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D PAM18_2245 hypothetical protein K04067 priC; primosomal replication protein N'' D PAM18_4371 putative exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50 D PAM18_0703 putative RecF/RecN/SMC N terminal domain protein K03546 sbcC; DNA repair protein SbcC/Rad50 D PAM18_4370 sbcD; exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D PAM18_4703 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms D PAM18_0003 recF; recombination protein F K03629 recF; DNA replication and repair protein RecF D PAM18_5465 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D PAM18_4266 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D PAM18_3514 recR; recombination protein RecR K06187 recR; recombination protein RecR D PAM18_4871 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D PAM18_1706 rdgC; recombination associated protein K03554 rdgC; recombination associated protein RdgC D PAM18_2618 cas1; CRISPR-associated protein K15342 cas1; CRISP-associated protein Cas1 D PAM18_4397 hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase D PAM18_2888 putative KU domain protein K10979 ku; DNA end-binding protein Ku D PAM18_2902 ligD; ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D PAM18_1804 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D PAM18_0004 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D PAM18_2796 pslN; putative DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D PAM18_1949 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D PAM18_5468 putative DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha D PAM18_3240 hupB; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D PAM18_1000 putative DNA binding protein K03530 hupB; DNA-binding protein HU-beta D PAM18_2430 recT; recombination and repair protein K07455 recT; recombination protein RecT D PAM18_4964 fis; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D PAM18_2235 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha D PAM18_1811 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta D PAM18_1621 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D PAM18_4116 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D PAM18_1953 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D PAM18_3155 polB; DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7] D PAM18_4367 hypothetical protein K14160 imuA; protein ImuA D PAM18_4368 hypothetical protein K14161 imuB; protein ImuB D PAM18_4369 dnaE2; error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D PAM18_1369 recX; recombination regulator RecX K03565 recX; regulatory protein D PAM18_5416 rep; ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D PAM18_4000 dinG; ATP-dependent DNA helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D PAM18_1697 putative ATP-dependent DNA helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D PAM18_3877 nrdA; ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D PAM18_5618 nrdJa; NrdJa K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D PAM18_3878 nrdB; ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C 03029 Mitochondrial biogenesis [BR:paf03029] D PAM18_4521 putative cytochrome b K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D PAM18_4852 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D PAM18_2230 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D PAM18_1291 tsf; elongation factor Ts K02357 tsf; elongation factor Ts D PAM18_0653 tufA; elongation factor Tu K02358 tuf; elongation factor Tu D PAM18_0665 tufA; elongation factor Tu K02358 tuf; elongation factor Tu D PAM18_2973 fusA2; elongation factor G K02355 fusA; elongation factor G D PAM18_0664 fusA1; elongation factor G K02355 fusA; elongation factor G D PAM18_4267 era; GTP-binding protein Era K03595 era; GTPase D PAM18_0649 tyrZ; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D PAM18_0952 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D PAM18_4074 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D PAM18_5166 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D PAM18_4574 gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D PAM18_4575 gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D PAM18_4573 gatC; aspartyl/glutamyl-tRNA amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D PAM18_3575 putative protease K01173 ENDOG; endonuclease G, mitochondrial D PAM18_0698 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D PAM18_1298 putative outer membrane protein precursor K07277 SAM50; outer membrane protein insertion porin family D PAM18_4869 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D PAM18_4870 grpE; heat shock protein GrpE K03687 GRPE; molecular chaperone GrpE D PAM18_4476 groEL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D PAM18_4477 groES; co-chaperonin GroES K04078 groES; chaperonin GroES D PAM18_4868 dnaJ; DnaJ protein K03686 dnaJ; molecular chaperone DnaJ D PAM18_1124 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D PAM18_2982 putative pyridoxal-phosphate dependent enzyme K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D PAM18_1127 hscB; co-chaperone HscB K04082 hscB; molecular chaperone HscB D PAM18_1453 glutaredoxin-related protein K07390 grxD; monothiol glutaredoxin D PAM18_1484 hypothetical protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D PAM18_0115 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D PAM18_3581 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D PAM18_0109 cytochrome c oxidase assembly protein K02258 COX11; cytochrome c oxidase assembly protein subunit 11 D PAM18_0114 putative cytochrome oxidase assembly protein K02259 COX15; heme a synthase [EC:1.17.99.9] D PAM18_5696 putative inner membrane protein translocase component YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D PAM18_0112 hypothetical protein K14998 SURF1; surfeit locus 1 family protein D PAM18_0116 putative Sco1/SenC family protein K07152 SCO1; protein SCO1 D PAM18_3976 putative heat shock protein (hsp90 family) K04079 HSP90A; molecular chaperone HtpG D PAM18_3451 htpG; heat shock protein 90 K04079 HSP90A; molecular chaperone HtpG B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:paf02000] D PAM18_5111 msbA; transport protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D PAM18_0794 putative toxin transporter K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB D PAM18_1743 putative ATP-binding/permease fusion ABC transporter K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump D PAM18_3919 putative ATP-binding/permease fusion ABC transporter K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D PAM18_0715 putative ATP-binding component of ABC transporter K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D PAM18_3165 putative ATP-binding/permease fusion ABC transporter K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB D PAM18_1560 hasD; transport protein HasD K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D PAM18_3785 aprD; alkaline protease secretion protein AprD K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D PAM18_4180 putative ATP-binding/permease fusion ABC transporter K06148 ABCC-BAC; ATP-binding cassette, subfamily C, bacterial D PAM18_2651 putative ATP-binding/permease fusion ABC transporter K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-] D PAM18_2644 pvdE; pyoverdine biosynthesis protein PvdE K06160 pvdE; putative pyoverdin transport system ATP-binding/permease protein D PAM18_1941 putative ATP-binding component of ABC transporter K15738 uup; ABC transport system ATP-binding/permease protein D PAM18_3638 cysP; sulfate-binding protein of ABC transporter K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein D PAM18_0278 sbp; sulfate-binding protein precursor K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D PAM18_0277 cysT; sulfate transport protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D PAM18_0276 cysW; sulfate transport protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D PAM18_0275 cysA; sulfate transport protein CysA K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D PAM18_3179 modA; molybdate-binding periplasmic protein precursor ModA K02020 modA; molybdate transport system substrate-binding protein D PAM18_3180 modB; molybdenum transport protein ModB K02018 modB; molybdate transport system permease protein D PAM18_3181 modC; molybdenum transport protein ModC K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D PAM18_1002 putative periplasmic taurine-binding protein precursor K15551 tauA; taurine transport system substrate-binding protein D PAM18_1004 putative permease of ABC taurine transporter K15552 tauC; taurine transport system permease protein D PAM18_1003 putative ATP-binding component of ABC taurine transporter K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7] D PAM18_2379 putative periplasmic aliphatic sulfonate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D PAM18_2380 putative periplasmic aliphatic sulfonate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D PAM18_2381 putative periplasmic aliphatic sulfonate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D PAM18_1516 putative sulfonate binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D PAM18_1520 putative ABC-type transporter periplasmic sulfonate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D PAM18_0186 putative binding protein component of ABC transporter K15553 ssuA; sulfonate transport system substrate-binding protein D PAM18_2376 putative periplasmic aliphatic sulfonate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D PAM18_2731 putative ABC transporter, periplasmic binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D PAM18_2744 hypothetical protein K15553 ssuA; sulfonate transport system substrate-binding protein D PAM18_1517 putative permease of ABC transporter K15554 ssuC; sulfonate transport system permease protein D PAM18_1522 putative permease of ABC transporter K15554 ssuC; sulfonate transport system permease protein D PAM18_0185 putative permease of ABC transporter K15554 ssuC; sulfonate transport system permease protein D PAM18_2733 putative permease of ABC transporter K15554 ssuC; sulfonate transport system permease protein D PAM18_2745 putative permease of ABC transporter K15554 ssuC; sulfonate transport system permease protein D PAM18_0184 putative ATP-binding component of ABC transporter K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D PAM18_1518 putative ATP-binding component of ABC transporter K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D PAM18_1523 ssuB; aliphatic sulfonates transport ATP-binding subunit K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D PAM18_2732 putative ATP-binding component of ABC transporter K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D PAM18_2746 putative ATP-binding component of ABC transporter K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D PAM18_4793 hitA; ferric iron-binding periplasmic protein HitA K02012 afuA; iron(III) transport system substrate-binding protein D PAM18_5335 putative binding protein component of ABC iron transporter K02012 afuA; iron(III) transport system substrate-binding protein D PAM18_4794 hitB; putative iron ABC transporter, permease protein K02011 afuB; iron(III) transport system permease protein D PAM18_5334 putative permease of ABC iron transporter K02011 afuB; iron(III) transport system permease protein D PAM18_1448 putative ATP-binding component of ABC transporter K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D PAM18_0319 putative binding protein component of ABC transporter K11069 potD; spermidine/putrescine transport system substrate-binding protein D PAM18_1375 potD; polyamine transport protein PotD K11069 potD; spermidine/putrescine transport system substrate-binding protein D PAM18_0320 putative permease of ABC transporter K11070 potC; spermidine/putrescine transport system permease protein D PAM18_1376 potC; polyamine transport protein PotC K11070 potC; spermidine/putrescine transport system permease protein D PAM18_0321 putative permease of ABC transporter K11071 potB; spermidine/putrescine transport system permease protein D PAM18_1377 potB; polyamine transport protein PotB K11071 potB; spermidine/putrescine transport system permease protein D PAM18_0322 putative ATP-binding component of ABC transporter K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D PAM18_1378 potA; polyamine transport protein PotA K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D PAM18_3721 putative periplasmic spermidine/putrescine-binding protein K11073 potF; putrescine transport system substrate-binding protein D PAM18_0290 putative periplasmic polyamine binding protein K11073 potF; putrescine transport system substrate-binding protein D PAM18_0295 spuD; polyamine transport protein K11073 potF; putrescine transport system substrate-binding protein D PAM18_0296 spuE; polyamine transport protein K11073 potF; putrescine transport system substrate-binding protein D PAM18_2401 putative periplasmic spermidine/putrescine-binding protein K11073 potF; putrescine transport system substrate-binding protein D PAM18_2261 putative periplasmic spermidine/putrescine-binding protein K11073 potF; putrescine transport system substrate-binding protein D PAM18_0299 spuH; polyamine transport protein PotI K11074 potI; putrescine transport system permease protein D PAM18_0298 spuG; polyamine transport protein PotH K11075 potH; putrescine transport system permease protein D PAM18_0297 spuF; polyamine transport protein PotG K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16] D PAM18_0218 putative binding protein component of ABC transporter K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D PAM18_1721 putative ABC transporter, periplasmic substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D PAM18_0603 putative binding protein component of ABC transporter K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D PAM18_0605 putative binding protein component of ABC transporter K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D PAM18_5098 putative extracellular solute-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D PAM18_1718 putative permease of ABC transporter K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D PAM18_0607 putative permease of ABC transporter K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D PAM18_0606 putative permease of ABC transporter K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D PAM18_1719 putative permease of ABC transporter K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D PAM18_1717 putative ATP-binding component of ABC transporter K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D PAM18_0604 putative ATP-binding component of ABC transporter K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D PAM18_0030 putative glycine betaine/L-proline ABC transporter, periplasmic substrate-binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein D PAM18_1735 putative glycine betaine-binding protein precursor K02002 proX; glycine betaine/proline transport system substrate-binding protein D PAM18_5498 putative glycine betaine/L-proline ABC transporter, periplasmic component K02002 proX; glycine betaine/proline transport system substrate-binding protein D PAM18_5508 putative glycine betaine/L-proline ABC transporter, periplasmic substrate-binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein D PAM18_5210 putative binding protein component of ABC transporter K02002 proX; glycine betaine/proline transport system substrate-binding protein D PAM18_5217 putative ABC transporter, periplasmic substrate-binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein D PAM18_5497 putative permease of ABC transporter K02001 proW; glycine betaine/proline transport system permease protein D PAM18_5209 putative permease of ABC transporter K02001 proW; glycine betaine/proline transport system permease protein D PAM18_5496 putative ATP-binding component of ABC transporter K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D PAM18_5208 putative ATP-binding component of ABC transporter K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D PAM18_1052 putative binding protein component of ABC transporter K05845 opuC; osmoprotectant transport system substrate-binding protein D PAM18_1051 putative permease of ABC transporter K05846 opuBD; osmoprotectant transport system permease protein D PAM18_1053 putative permease of ABC transporter K05846 opuBD; osmoprotectant transport system permease protein D PAM18_1050 putative ATP-binding component of ABC transporter K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D PAM18_2713 putative sulfonate ABC transporter, periplasmic sulfonate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D PAM18_2714 putative permease of ABC transporter K02050 ABC.SN.P; NitT/TauT family transport system permease protein D PAM18_2712 putative ATP-binding component of ABC transporter K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D PAM18_2700 putative ATP-binding component of ABC maltose/mannitol transporter K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D PAM18_1785 putative ATP-binding component of ABC transporter K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D PAM18_1782 putative binding protein component of ABC sugar transporter K17315 gtsA; glucose/mannose transport system substrate-binding protein D PAM18_1783 putative permease of ABC sugar transporter K17316 gtsB; glucose/mannose transport system permease protein D PAM18_1784 putative permease of ABC sugar transporter K17317 gtsC; glucose/mannose transport system permease protein D PAM18_3099 rbsB; binding protein component precursor of ABC ribose transporter K10439 rbsB; ribose transport system substrate-binding protein D PAM18_3097 rbsC; membrane protein component of ABC ribose transporter K10440 rbsC; ribose transport system permease protein D PAM18_3098 rbsA; ribose transport protein RbsA K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D PAM18_2703 putative binding protein component of ABC maltose/mannitol transporter K10227 smoE; polyol transport system substrate-binding protein D PAM18_2702 putative binding-protein-dependent maltose/mannitol transport protein K10228 smoF; polyol transport system permease protein D PAM18_2701 putative binding-protein-dependent maltose/mannitol transport protein K10229 smoG; polyol transport system permease protein D PAM18_0147 putative basic membrane protein (bmp) K07335 bmpA; basic membrane protein A and related proteins D PAM18_0138 putative permease of ABC transporter K23535 nupB; general nucleoside transport system permease protein D PAM18_0139 putative permease of ABC transporter K23536 nupC; general nucleoside transport system permease protein D PAM18_0137 putative ATP-binding component of ABC transporter K23537 nupA; general nucleoside transport system ATP-binding protein D PAM18_4545 hypothetical protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D PAM18_1758 ABC-type transporter, periplasmic component K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D PAM18_4546 putative permease of ABC transporter K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D PAM18_1760 putative permease of ABC transporter K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D PAM18_4547 putative ATP-binding component of ABC transporter K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D PAM18_1759 putative ATP-binding component of ABC transporter K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D PAM18_1757 putative ABC-type uncharacterized transport system K18480 linN; cholesterol transport system auxiliary component D PAM18_4544 putative toluene tolerance protein K07323 mlaC; phospholipid transport system substrate-binding protein D PAM18_4543 hypothetical protein K07122 mlaB; phospholipid transport system transporter-binding protein D PAM18_2490 putative ABC-type periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D PAM18_5489 pstS; phosphate ABC transporter, periplasmic phosphate-binding protein, PstS K02040 pstS; phosphate transport system substrate-binding protein D PAM18_5488 pstC; membrane protein component of ABC phosphate transporter K02037 pstC; phosphate transport system permease protein D PAM18_5487 pstA; membrane protein component of ABC phosphate transporter K02038 pstA; phosphate transport system permease protein D PAM18_5486 pstB; ATP-binding component of ABC phosphate transporter K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D PAM18_1652 putative ABC-type phosphate/phosphonate transport system, periplasmic component K02044 phnD; phosphonate transport system substrate-binding protein D PAM18_1584 binding protein component of ABC phosphonate transporter K02044 phnD; phosphonate transport system substrate-binding protein D PAM18_1649 putative permease of ABC transporter K02042 phnE; phosphonate transport system permease protein D PAM18_1650 putative permease of ABC transporter K02042 phnE; phosphonate transport system permease protein D PAM18_1585 phnE; phosphonate transport protein PhnE K02042 phnE; phosphonate transport system permease protein D PAM18_1651 putative ATP-binding component of ABC transporter K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D PAM18_1583 phnC; ATP-binding component of ABC phosphonate transporter K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D PAM18_2037 hisM; histidine transport system permease HisM K10015 hisM; histidine transport system permease protein D PAM18_2038 hisQ; histidine transport system permease HisQ K10016 hisQ; histidine transport system permease protein D PAM18_2036 hisP; histidine transport protein HisP K10017 hisP; histidine transport system ATP-binding protein [EC:7.4.2.1] D PAM18_2039 hisJ; periplasmic histidine-binding protein HisJ K10014 hisJ; histidine transport system substrate-binding protein D PAM18_3560 putative binding protein component of ABC transporter K10001 gltI; glutamate/aspartate transport system substrate-binding protein D PAM18_3562 putative permease of ABC transporter K10002 gltK; glutamate/aspartate transport system permease protein D PAM18_3561 putative permease of ABC transporter K10003 gltJ; glutamate/aspartate transport system permease protein D PAM18_3563 putative ATP-binding component of ABC transporter K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1] D PAM18_1080 putative amino acid-binding protein K09969 aapJ; general L-amino acid transport system substrate-binding protein D PAM18_0310 putative binding protein component of ABC transporter K02424 tcyA; L-cystine transport system substrate-binding protein D PAM18_0309 putative permease of ABC transporter K10009 tcyB; L-cystine transport system permease protein D PAM18_4151 aotJ; arginine/ornithine binding protein AotJ K10022 aotJ; arginine/ornithine transport system substrate-binding protein D PAM18_1073 putative amino acid binding protein K10022 aotJ; arginine/ornithine transport system substrate-binding protein D PAM18_4149 aotM; arginine/ornithine transport protein AotM K10023 aotM; arginine/ornithine transport system permease protein D PAM18_4150 aotQ; arginine/ornithine transport protein AotQ K10024 aotQ; arginine/ornithine transport system permease protein D PAM18_4147 aotP; arginine/ornithine transport protein AotP K10025 aotP; arginine/ornithine transport system ATP-binding protein [EC:7.4.2.1] D PAM18_3771 putative binding protein component of ABC transporter K23061 lhpP; hydroxyproline transporter system substrate-binding protein D PAM18_3773 putative permease of ABC transporter K23062 lhpM; hydroxyproline transport system permease protein D PAM18_3774 putative permease of ABC transporter K23063 lhpN; hydroxyproline transport system permease protein D PAM18_3775 putative ATP-binding component of ABC transporter K23064 lhpO; hydroxyproline transport system ATP-binding protein [EC:7.4.2.1] D PAM18_3970 braC; branched-chain amino acid transport protein BraC K01999 livK; branched-chain amino acid transport system substrate-binding protein D PAM18_1601 amiC; aliphatic amidase expression-regulating protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D PAM18_5024 putative binding protein component of ABC transporter K01999 livK; branched-chain amino acid transport system substrate-binding protein D PAM18_3971 braD; branched-chain amino acid transport protein BraD K01997 livH; branched-chain amino acid transport system permease protein D PAM18_5023 putative permease of ABC branched chain amino acid transporter K01997 livH; branched-chain amino acid transport system permease protein D PAM18_3972 livM; leucine/isoleucine/valine transporter permease subunit K01998 livM; branched-chain amino acid transport system permease protein D PAM18_5022 putative permease of ABC branched-chain amino acid transporter K01998 livM; branched-chain amino acid transport system permease protein D PAM18_3973 livG; leucine/isoleucine/valine transporter ATP-binding subunit K01995 livG; branched-chain amino acid transport system ATP-binding protein D PAM18_5021 putative ATP-binding component of ABC transporter K01995 livG; branched-chain amino acid transport system ATP-binding protein D PAM18_3974 braG; branched-chain amino acid transport protein BraG K01996 livF; branched-chain amino acid transport system ATP-binding protein D PAM18_5020 putative ATP-binding component of ABC transporter K01996 livF; branched-chain amino acid transport system ATP-binding protein D PAM18_2692 putative ABC transporter, periplasmic binding protein K02073 metQ; D-methionine transport system substrate-binding protein D PAM18_1009 hypothetical protein K02073 metQ; D-methionine transport system substrate-binding protein D PAM18_5626 putative TonB-dependent receptor K02073 metQ; D-methionine transport system substrate-binding protein D PAM18_2690 putative permease of ABC transporter K02072 metI; D-methionine transport system permease protein D PAM18_5625 putative permease of ABC transporter K02072 metI; D-methionine transport system permease protein D PAM18_2691 putative ATP-binding component of ABC transporter K02071 metN; D-methionine transport system ATP-binding protein D PAM18_5624 putative ATP-binding component of ABC transporter K02071 metN; D-methionine transport system ATP-binding protein D PAM18_4970 putative branched-chain amino acid ABC transporter, periplasmic component K11959 urtA; urea transport system substrate-binding protein D PAM18_4971 putative permease of ABC transporter K11960 urtB; urea transport system permease protein D PAM18_4972 putative permease of ABC transporter K11961 urtC; urea transport system permease protein D PAM18_4973 putative ATP-binding component of ABC transporter K11962 urtD; urea transport system ATP-binding protein D PAM18_4974 putative ATP-binding component of ABC transporter K11963 urtE; urea transport system ATP-binding protein D PAM18_1102 putative ABC-type transport protein, periplasmic c K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein D PAM18_1101 putative permease of ABC transporter K05832 K05832; putative tryptophan/tyrosine transport system permease protein D PAM18_1100 putative ATP-binding component of ABC transporter K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein D PAM18_5269 putative periplasmic binding protein K23055 K23055; putative lysine/arginine/ornithine/histidine/octopine transport system substrate-binding protein D PAM18_5270 putative permease of ABC transporter K23056 K23056; putative lysine/arginine/ornithine/histidine/octopine transport system permease protein D PAM18_5271 putative permease of ABC transporter K23057 K23057; putative lysine/arginine/ornithine/histidine/octopine transport system permease protein D PAM18_5268 putative ATP-binding component of ABC transporter K23058 K23058; putative lysine/arginine/ornithine/histidine/octopine transport system ATP-binding protein [EC:7.4.2.1] D PAM18_0742 putative binding protein component of ABC transporter K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D PAM18_2060 hypothetical protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D PAM18_5252 putative ABC-type amino acid transport protein, periplasmic component K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D PAM18_2831 putative binding protein component of ABC transporter K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D PAM18_0451 putative periplasmic transport system K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D PAM18_0913 hypothetical protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D PAM18_5095 hypothetical protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D PAM18_4261 hypothetical protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D PAM18_5253 putative ABC-type amino acid transporter K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D PAM18_5390 putative ABC-type amino acid transporter K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D PAM18_5191 putative binding protein component of ABC transporter K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D PAM18_5251 putative ABC-type amino acid transporter K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D PAM18_0981 hypothetical protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D PAM18_0891 hypothetical protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D PAM18_1709 putative periplasmic binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D PAM18_0744 putative permease of ABC transporter K02029 ABC.PA.P; polar amino acid transport system permease protein D PAM18_0743 putative permease of ABC transporter K02029 ABC.PA.P; polar amino acid transport system permease protein D PAM18_2832 putative amino acid permease K02029 ABC.PA.P; polar amino acid transport system permease protein D PAM18_2833 putative amino acid permease K02029 ABC.PA.P; polar amino acid transport system permease protein D PAM18_5190 putative permease of ABC transporter K02029 ABC.PA.P; polar amino acid transport system permease protein D PAM18_0745 putative ATP-binding component of ABC transporter K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D PAM18_5189 putative ATP-binding component of ABC transporter K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D PAM18_4587 putative binding protein component of ABC transporter K12368 dppA; dipeptide transport system substrate-binding protein D PAM18_4588 putative binding protein component of ABC transporter K12368 dppA; dipeptide transport system substrate-binding protein D PAM18_4591 putative binding protein component of ABC transporter K12368 dppA; dipeptide transport system substrate-binding protein D PAM18_4593 putative binding protein component of ABC transporter K12368 dppA; dipeptide transport system substrate-binding protein D PAM18_5437 putative binding protein component of ABC dipeptide transporter K12368 dppA; dipeptide transport system substrate-binding protein D PAM18_4594 putative permease of ABC transporter K12369 dppB; dipeptide transport system permease protein D PAM18_4595 putative permease of ABC transporter K12370 dppC; dipeptide transport system permease protein D PAM18_4596 putative ATP-binding component of ABC transporter K12371 dppD; dipeptide transport system ATP-binding protein D PAM18_4597 dppF; dipeptide transporter ATP-binding subunit K12372 dppF; dipeptide transport system ATP-binding protein D PAM18_2986 putative binding protein component of ABC transporter K13893 yejA; microcin C transport system substrate-binding protein D PAM18_3233 putative solute-binding protein K13893 yejA; microcin C transport system substrate-binding protein D PAM18_3234 putative binding protein component of ABC transporter K13893 yejA; microcin C transport system substrate-binding protein D PAM18_2985 putative permease of ABC transporter K13894 yejB; microcin C transport system permease protein D PAM18_3235 putative permease of ABC transporter K13894 yejB; microcin C transport system permease protein D PAM18_2984 putative permease of ABC transporter K13895 yejE; microcin C transport system permease protein D PAM18_3236 putative permease of ABC transporter K13895 yejE; microcin C transport system permease protein D PAM18_2983 putative ATP-binding component of ABC transporter K13896 yejF; microcin C transport system ATP-binding protein D PAM18_3237 putative ATP-binding component of ABC transporter K13896 yejF; microcin C transport system ATP-binding protein D PAM18_4815 phuT; Heme-transport protein, PhuT K25132 hmuT; heme transport system substrate-binding protein D PAM18_4814 putative permease of ABC transporter K25133 hmuU; heme transport system permease protein D PAM18_4813 hmuV; hemin importer ATP-binding subunit K10834 hmuV; heme transport system ATP-binding protein [EC:7.6.2.5] D PAM18_0778 fepB; iron-enterobactin transporter periplasmic binding protein K23185 fepB; ferric enterobactin transport system substrate-binding protein D PAM18_0777 fepD; ferric enterobactin transport protein FepD K23186 fepD; iron-siderophore transport system permease protein D PAM18_0776 fepG; ferric enterobactin transport protein FepG K23187 fepG; iron-siderophore transport system permease protein D PAM18_0779 fepC; ferric enterobactin transport protein FepC K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-] D PAM18_2049 putative iron transport system substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D PAM18_2048 putative permease of ABC transporter K02015 ABC.FEV.P; iron complex transport system permease protein D PAM18_2050 putative ATP-binding component of ABC transporter K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D PAM18_0895 putative ABC transporter K06858 btuF; vitamin B12 transport system substrate-binding protein D PAM18_2635 putative adhesion protein K09815 znuA; zinc transport system substrate-binding protein D PAM18_5619 putative adhesin K09815 znuA; zinc transport system substrate-binding protein D PAM18_2633 putative permease of ABC transporter K09816 znuB; zinc transport system permease protein D PAM18_5622 znuB; permease of ABC zinc transporter ZnuB K09816 znuB; zinc transport system permease protein D PAM18_2634 putative ATP-binding component of ABC transporter K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D PAM18_5621 znuC; zinc transport protein ZnuC K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D PAM18_2295 putative permease of ABC-2 transporter K09690 wzm; homopolymeric O-antigen transport system permease protein D PAM18_5573 wzm; membrane subunit of A-band LPS efflux transporter K09690 wzm; homopolymeric O-antigen transport system permease protein D PAM18_5572 wzt; ABC subunit of A-band LPS efflux transporter K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14] D PAM18_1110 putative permease K07091 lptF; lipopolysaccharide export system permease protein D PAM18_1111 putative permease K11720 lptG; lipopolysaccharide export system permease protein D PAM18_4552 putative ATP-binding component of ABC transporter K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D PAM18_1572 nosY; NosY protein K19341 nosY; Cu-processing system permease protein D PAM18_1573 nosF; NosF protein K19340 nosF; Cu-processing system ATP-binding protein D PAM18_1275 putative permease of ABC transporter K25151 gldF; gliding motility-associated transport system permease protein D PAM18_0902 putative ABC transporter permease component K25151 gldF; gliding motility-associated transport system permease protein D PAM18_0903 putative ATP-binding component of ABC transporter K25152 gldA; gliding motility-associated transport system ATP-binding protein D PAM18_1274 putative ATP-binding component of ABC transporter K25152 gldA; gliding motility-associated transport system ATP-binding protein D PAM18_1276 putative auxiliary component of ABC transporter K25153 gldG; gliding motility-associatede transport system auxiliary component D PAM18_0901 putative ABC transporter component K25153 gldG; gliding motility-associatede transport system auxiliary component D PAM18_2397 pltK; inner membrane permease protein K25187 pltK; pyoluteorin transport system permease protein D PAM18_2396 pltJ; inner membrane permease protein K25188 pltJ; pyoluteorin transport system permease protein D PAM18_2395 pltI; ATP-binding protein K25189 pltI; pyoluteorin transport system ATP-binding protein D PAM18_2394 pltH; membrane fusion protein K25190 pltH; membrane fusion protein PltH D PAM18_2398 pltN; outer membrane channel protein K25184 pltN; outer membrane protein PltN D PAM18_1973 putative lipoprotein releasing system, permease protein K09808 lolC_E; lipoprotein-releasing system permease protein D PAM18_1975 putative lipoprotein releasing system, permease protein K09808 lolC_E; lipoprotein-releasing system permease protein D PAM18_1974 putative ATP-binding component of ABC transporter K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D PAM18_3654 putative heme exporter protein K02196 ccmD; heme exporter protein D D PAM18_3655 ccmC; heme exporter protein CcmC K02195 ccmC; heme exporter protein C D PAM18_3656 ccmB; heme exporter protein CcmB K02194 ccmB; heme exporter protein B D PAM18_3657 ccmA; cytochrome c biogenesis protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D PAM18_0374 ftsX; cell division protein FtsX K09811 ftsX; cell division transport system permease protein D PAM18_0373 ftsE; cell division protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D PAM18_1567 putative ABC-type multidrug transport system, permease component K01992 ABC-2.P; ABC-2 type transport system permease protein D PAM18_5349 putative permease of ABC transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D PAM18_1566 putative ABC-type multidrug transport system, permease component K01992 ABC-2.P; ABC-2 type transport system permease protein D PAM18_2152 putative permease of ABC-2 transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D PAM18_2151 putative ATP-binding component of ABC transporter K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D PAM18_2105 putative ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein D PAM18_4686 putative permease of ABC transporter K02004 ABC.CD.P; putative ABC transport system permease protein D PAM18_0876 putative permease K02004 ABC.CD.P; putative ABC transport system permease protein D PAM18_0073 putative permease K02004 ABC.CD.P; putative ABC transport system permease protein D PAM18_2106 putative ATP-binding component of ABC transporter K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D PAM18_4687 putative ATP-binding component of ABC transporter K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D PAM18_0877 putative ATP-binding component of ABC transporter K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D PAM18_0074 putative ATP-binding component of ABC transporter K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D PAM18_3018 putative transporter, bile acid/Na+ symporter family K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7 D PAM18_3541 putative transporter K26939 norM; MATE family, multidrug efflux pump D PAM18_4931 putative transporter K26937 dinF; MATE family, multidrug efflux pump D PAM18_5652 putative MFS dicarboxylate transporter K03761 kgtP; MFS transporter, MHS family, alpha-ketoglutarate permease D PAM18_0225 pcaT; dicarboxylic acid transporter PcaT K02625 pcaT; MFS transporter, MHS family, dicarboxylic acid transporter PcaT D PAM18_5490 putative major facilitator superfamily (MFS) transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter D PAM18_0237 putative major facilitator superfamily (MFS) transporter K08191 exuT; MFS transporter, ACS family, aldohexuronate transporter D PAM18_2825 putative MFS transporter K08194 dgoT; MFS transporter, ACS family, D-galactonate transporter D PAM18_2821 putative major facilitator superfamily (MFS) transporter K26580 rhmT; MFS transporter, ACS family, inner membrane transport protein D PAM18_2567 putative major facilitator superfamily (MFS) transporter K08195 pcaK; MFS transporter, AAHS family, 4-hydroxybenzoate transporter D PAM18_3039 putative major facilitator superfamily (MFS) transporter K08195 pcaK; MFS transporter, AAHS family, 4-hydroxybenzoate transporter D PAM18_0231 pcaK; 4-hydroxybenzoate transporter PcaK K08195 pcaK; MFS transporter, AAHS family, 4-hydroxybenzoate transporter D PAM18_4028 mucK; cis,cis-muconate transporter MucK K08196 mucK; MFS transporter, AAHS family, cis,cis-muconate transporter D PAM18_5011 putative major facilitator superfamily (MFS) transporter K05548 benK; MFS transporter, AAHS family, benzoate transport protein D PAM18_5014 putative major facilitator superfamily (MFS) transporter K26744 vanK; MFS transporter, AAHS family, vanillate permease D PAM18_3421 putative major facilitator superfamily (MFS) transporter K03449 MFS.CP; MFS transporter, CP family, cyanate transporter D PAM18_2539 putative major facilitator superfamily (MFS) transporter K03449 MFS.CP; MFS transporter, CP family, cyanate transporter D PAM18_0268 putative major facilitator superfamily (MFS) transporter K03449 MFS.CP; MFS transporter, CP family, cyanate transporter D PAM18_3365 putative MFS metabolite transporter K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter D PAM18_2976 putative major facilitator superfamily (MFS) transporter K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter D PAM18_5354 glpT; sn-glycerol-3-phosphate transporter K02445 glpT; MFS transporter, OPA family, glycerol-3-phosphate transporter D PAM18_3479 putative major facilitator superfamily (MFS) transporter K02445 glpT; MFS transporter, OPA family, glycerol-3-phosphate transporter D PAM18_3263 nasA; nitrate transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D PAM18_1065 narK1; nitrite extrusion protein 1 K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D PAM18_1066 narK2; nitrite extrusion protein 2 K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D PAM18_4484 putative permease K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D PAM18_0719 putative transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D PAM18_3901 putative major facilitator superfamily (MFS) transporter K08151 tetA; MFS transporter, DHA1 family, tetracycline resistance protein D PAM18_1412 putative major facilitator superfamily (MFS) transporter K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D PAM18_0803 putative major facilitator superfamily (MFS) transporter K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D PAM18_0826 sugar efflux transporter K08159 sotB; MFS transporter, DHA1 family, L-arabinose/isopropyl-beta-D-thiogalactopyranoside export protein D PAM18_2169 hypothetical protein K08161 mdtG; MFS transporter, DHA1 family, multidrug resistance protein D PAM18_1665 putative major facilitator superfamily (MFS) transporter K18567 pbuE; MFS transporter, DHA1 family, purine base/nucleoside efflux pump D PAM18_2951 putative major facilitator superfamily (MFS) transporter K18567 pbuE; MFS transporter, DHA1 family, purine base/nucleoside efflux pump D PAM18_1629 putative major facilitator superfamily (MFS) transporter K18553 cmlR; MFS transporter, DHA1 family, chloramphenicol resistance protein D PAM18_4445 putative major facilitator superfamily (MFS) transporter K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein D PAM18_2128 putative major facilitator superfamily (MFS) transporter K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein D PAM18_1826 putative major facilitator superfamily (MFS) transporter K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein D PAM18_5276 drug efflux transporter K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein D PAM18_3797 putative major facilitator superfamily (MFS) transporter K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein D PAM18_3747 putative major facilitator superfamily (MFS) transporter K08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein D PAM18_3587 putative major facilitator superfamily (MFS) transporter K08166 mmr; MFS transporter, DHA2 family, methylenomycin A resistance protein D PAM18_5145 putative major facilitator superfamily (MFS) transporter K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein D PAM18_5337 putative permease K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein D PAM18_0750 putative major facilitator superfamily (MFS) transporter K08368 yaaU; MFS transporter, putative metabolite transport protein D PAM18_1498 putative major facilitator superfamily (MFS) transporter K08369 ydjE; MFS transporter, putative metabolite:H+ symporter D PAM18_0335 ptsP; phosphoenolpyruvate-protein phosphotransferase PtsP K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9] D PAM18_4557 tryptophanyl-tRNA synthetase K08485 ptsO; phosphocarrier protein NPr D PAM18_1424 putative phosphotransferase system enzyme I K23993 fruB; multiphosphoryl transfer protein [EC:2.7.3.9 2.7.1.202] D PAM18_1185 putative phosphotransferase protein K23993 fruB; multiphosphoryl transfer protein [EC:2.7.3.9 2.7.1.202] D PAM18_1184 putative phosphotransferase system protein K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D PAM18_1426 fruA; phosphotransferase system, fructose-specific IIBC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D PAM18_4555 ptsN; nitrogen regulatory IIA protein K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] D PAM18_0906 aqpZ; aquaporin Z K06188 aqpZ; aquaporin Z D PAM18_1404 glpF; glycerol uptake facilitator protein K02440 glpF; glycerol uptake facilitator D PAM18_3635 putative potassium channel K10716 kch; voltage-gated potassium channel D PAM18_1921 putative transporter K03320 amt; ammonium transporter, Amt family D PAM18_5408 amtB; ammonium transporter AmtB K03320 amt; ammonium transporter, Amt family D PAM18_3152 putative glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D PAM18_3391 putative glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D PAM18_1925 putative glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D PAM18_3665 putative glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D PAM18_4492 putative glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D PAM18_2150 putative glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D PAM18_0472 putative glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D PAM18_2142 putative glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D PAM18_4519 sspA; stringent starvation protein A K03599 sspA; stringent starvation protein A D PAM18_1889 putative TPR domain protein K07114 yfbK; Ca-activated chloride channel homolog D PAM18_1890 putative von Willebrand factor type A domain protein K07114 yfbK; Ca-activated chloride channel homolog D PAM18_2371 putative 24K membrane protein K19416 yccA; modulator of FtsH protease D PAM18_4708 mscL; large-conductance mechanosensitive channel K03282 mscL; large conductance mechanosensitive channel D PAM18_5137 potassium efflux protein KefA K05802 mscK; potassium-dependent mechanosensitive channel D PAM18_3723 putative mechanosensitive ion channel family protein K05802 mscK; potassium-dependent mechanosensitive channel D PAM18_4485 putative mechanosensitive ion channel family protein K03442 mscS; small conductance mechanosensitive channel D PAM18_5036 putative mechanosensitive ion channel family protein K03442 mscS; small conductance mechanosensitive channel D PAM18_5235 putative small-conductance mechanosensitive channel K22044 ybiO; moderate conductance mechanosensitive channel D PAM18_1497 putative mechanosensitive ion channel family protein K16053 ybdG; miniconductance mechanosensitive channel D PAM18_4126 mgtE; putative Mg transporter MgtE K06213 mgtE; magnesium transporter D PAM18_3634 putative transporter K08717 utp; urea transporter D PAM18_1603 hypothetical protein K22112 amiS; putative amide transporter protein D PAM18_3671 motC; flagellar motor protein K02556 motA; chemotaxis protein MotA D PAM18_5065 motA; flagellar motor protein MotA K02556 motA; chemotaxis protein MotA D PAM18_3670 motD; flagellar motor protein MotD K02557 motB; chemotaxis protein MotB D PAM18_5064 motB; flagellar motor protein MotB K02557 motB; chemotaxis protein MotB D PAM18_1460 putative outer membrane protein precursor K21218 motY; sodium-type flagellar protein MotY D PAM18_4345 exbB2; transport protein ExbB2 K03561 exbB; biopolymer transport protein ExbB D PAM18_0199 exbB1; transport protein ExbB K03561 exbB; biopolymer transport protein ExbB D PAM18_1978 putative tolQ-type transport protein K03561 exbB; biopolymer transport protein ExbB D PAM18_1979 putative biopolymer transport protein K03559 exbD; biopolymer transport protein ExbD D PAM18_4344 exbD2; transport protein ExbD K03559 exbD; biopolymer transport protein ExbD D PAM18_0200 exbD1; transport protein ExbD K03559 exbD; biopolymer transport protein ExbD D PAM18_4068 tolQ; TolQ protein K03562 tolQ; biopolymer transport protein TolQ D PAM18_4067 tolR; TolR protein K03560 tolR; biopolymer transport protein TolR D PAM18_5388 corA; magnesium/cobalt transport protein K03284 corA; magnesium transporter D PAM18_3273 cmaX; CmaX protein K16074 zntB; zinc transporter D PAM18_3168 putative cation transporter K16074 zntB; zinc transporter D PAM18_4474 putative integral membrane protein K06199 crcB; fluoride exporter D PAM18_5482 putative metal ion transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family D PAM18_1197 putative hemolysin containing a CBS domain K03699 tlyC; magnesium and cobalt exporter, CNNM family D PAM18_1689 oprO; Pyrophosphate-specific outer membrane porin OprO precursor K07221 oprO_P; phosphate-selective porin OprO and OprP D PAM18_1690 oprP; Phosphate-specific outer membrane porin OprP precursor K07221 oprO_P; phosphate-selective porin OprO and OprP D PAM18_3269 oprF; Major porin and structural outer membrane porin OprF precursor K03286 TC.OOP; OmpA-OmpF porin, OOP family D PAM18_4682 putative outer membrane protein precursor K06076 fadL; long-chain fatty acid transport protein D PAM18_3741 putative outer membrane protein precursor K06076 fadL; long-chain fatty acid transport protein D PAM18_2911 cupA3; usher CupA3 K07347 fimD; outer membrane usher protein D PAM18_4054 cupC3; usher CupC3 K07347 fimD; outer membrane usher protein D PAM18_0856 cupB3; usher CupB3 K07347 fimD; outer membrane usher protein D PAM18_4749 putative type 1 pili usher protein CsuD K07347 fimD; outer membrane usher protein D PAM18_1451 putative serine protease K12685 ssp; subtilase-type serine protease [EC:3.4.21.-] D PAM18_5226 estA; esterase EstA K12686 apeE; outer membrane lipase/esterase D PAM18_1442 algE; Alginate production outer membrane protein AlgE precursor K16081 algE; alginate production protein D PAM18_4108 pirA; outer membrane receptor FepA K19611 fepA; ferric enterobactin receptor D PAM18_2284 pfeA; outer membrane receptor FepA K19611 fepA; ferric enterobactin receptor D PAM18_4605 putative outer membrane ferric siderophore receptor K16090 fiu; catecholate siderophore receptor D PAM18_3580 putative TonB-dependent receptor K16090 fiu; catecholate siderophore receptor D PAM18_1039 fecA; Fe(III) dicitrate transport protein FecA K16091 fecA; Fe(3+) dicitrate transport protein D PAM18_1701 putative TonB-dependent receptor K16091 fecA; Fe(3+) dicitrate transport protein D PAM18_3758 putative tonB-dependent receptor K16092 btuB; vitamin B12 transporter D PAM18_1559 hasAp; heme acquisition protein HasAp K12545 hasA; heme acquisition protein HasA D PAM18_1558 hasR; heme uptake outer membrane receptor HasR precursor K16152 hasR; heme acquisition protein HasR D PAM18_0769 fpvB; second ferric pyoverdine receptor FpvB K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid D PAM18_0716 fptA; Fe(III)-pyochelin outer membrane receptor precursor K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid D PAM18_3117 putative TonB-dependent receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins D PAM18_5008 putative extracellular heme-binding protein K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein D PAM18_3601 putative heme utilization protein precursor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein D PAM18_4817 phuR; heme/hemoglobin uptake outer membrane receptor PhuR precursor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein D PAM18_2706 putative TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D PAM18_0192 putative TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D PAM18_2573 foxA; Ferrioxamine receptor FoxA K02014 TC.FEV.OM; iron complex outermembrane recepter protein D PAM18_3131 putative tonB-dependent receptor protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein D PAM18_0469 fiuA; Ferrichrome receptor FiuA K02014 TC.FEV.OM; iron complex outermembrane recepter protein D PAM18_1148 oprC; Putative copper transport outer membrane porin OprC precursor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D PAM18_4781 putative TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D PAM18_3537 putative siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D PAM18_2403 putative outer membrane receptor protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein D PAM18_2643 fpvA; ferrichrome-iron receptor (ferric hydroxamate uptake)(ferric hydroxamate receptor) K02014 TC.FEV.OM; iron complex outermembrane recepter protein D PAM18_2954 putative TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D PAM18_3434 putative outer membrane receptor protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein D PAM18_4257 hypothetical protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein D PAM18_0152 putative TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D PAM18_2051 putative TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D PAM18_0434 putative outer membrane ferric siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D PAM18_2751 putative TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D PAM18_2974 putative TonB dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D PAM18_4948 putative outer membrane protein precursor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D PAM18_0781 putative TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D PAM18_2987 putative TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D PAM18_1562 putative outer membrane protein precursor K12538 hasF; outer membrane protein, type I secretion system D PAM18_3783 aprF; Alkaline protease secretion outer membrane protein AprF precursor K12538 hasF; outer membrane protein, type I secretion system D PAM18_2517 czcC; outer membrane protein precursor CzcC K15725 czcC; outer membrane protein, heavy metal efflux system D PAM18_0793 putative outer membrane protein precursor K12340 tolC; outer membrane protein D PAM18_5085 putative outer membrane protein precursor K12340 tolC; outer membrane protein D PAM18_4685 putative outer membrane protein precursor K12340 tolC; outer membrane protein D PAM18_3166 putative outer membrane protein precursor K12543 lapE; outer membrane protein, adhesin transport system D PAM18_4691 oprJ; Multidrug efflux outer membrane protein OprJ precursor K08721 oprJ; outer membrane protein, multidrug efflux system D PAM18_2544 oprN; Multidrug efflux outer membrane protein OprN precursor K18300 oprN; outer membrane protein, multidrug efflux system D PAM18_0729 opmD; putative outer membrane protein precursor K18308 opmD; outer membrane protein, multidrug efflux system D PAM18_1465 putative outer membrane protein precursor K19593 opmE; outer membrane protein, multidrug efflux system D PAM18_0427 oprM; Major intrinsic multiple antibiotic resistance efflux outer membrane protein OprM precursor K18139 oprM; outer membrane protein, multidrug efflux system D PAM18_2806 pslD; putative exopolysaccharide transporter K20987 pslD; polysaccharide biosynthesis/export protein PslD D PAM18_0841 putative porin K07267 oprB; porin D PAM18_2749 putative glucose-sensitive porin K07267 oprB; porin D PAM18_1786 oprB; Glucose/carbohydrate outer membrane porin OprB precursor K07267 oprB; porin D PAM18_4079 oprD; Basic amino acid, basic peptide and imipenem outer membrane porin OprD precursor K18093 oprD; imipenem/basic amino acid-specific outer membrane pore [EC:3.4.21.-] D PAM18_0189 putative porin K18093 oprD; imipenem/basic amino acid-specific outer membrane pore [EC:3.4.21.-] D PAM18_2272 opdB; proline porin OpdB K18093 oprD; imipenem/basic amino acid-specific outer membrane pore [EC:3.4.21.-] D PAM18_1298 putative outer membrane protein precursor K07277 SAM50; outer membrane protein insertion porin family D PAM18_1138 hypothetical protein K17713 bamB; outer membrane protein assembly factor BamB D PAM18_4037 Putative lipoprotein K07287 bamC; outer membrane protein assembly factor BamC D PAM18_4637 comL; competence protein ComL K05807 bamD; outer membrane protein assembly factor BamD D PAM18_4873 omlA; Outer membrane lipoprotein OmlA precursor K06186 bamE; outer membrane protein assembly factor BamE D PAM18_2495 putative outer membrane protein K07278 tamA; translocation and assembly module TamA D PAM18_2496 hypothetical protein K09800 tamB; translocation and assembly module TamB D PAM18_4551 hypothetical protein K09774 lptA; lipopolysaccharide export system protein LptA D PAM18_4550 hypothetical protein K11719 lptC; lipopolysaccharide export system protein LptC D PAM18_0596 ostA; organic solvent tolerance protein OstA precursor K04744 lptD; LPS-assembly protein D PAM18_0951 hypothetical protein K03643 lptE; LPS-assembly lipoprotein D PAM18_3338 popB; translocator protein PopB K23475 yopB; transloator D PAM18_3337 popD; Translocator outer membrane protein PopD precursor K23476 yopD; transloator D PAM18_0956 Putative Mg2+ and Co2+ transporter CorC K06189 corC; hemolysin (HlyC) family protein D PAM18_1533 putative murein hydrolase exporter K06518 cidA; holin-like protein D PAM18_0926 hypothetical protein K06518 cidA; holin-like protein D PAM18_4723 lysP; lysine-specific permease K11733 lysP; lysine-specific permease D PAM18_4173 aroP2; aromatic amino acid transport protein AroP2 K11734 aroP; aromatic amino acid transport protein AroP D PAM18_1960 aroP1; aromatic amino acid transport protein AroP1 K11734 aroP; aromatic amino acid transport protein AroP D PAM18_0131 gabP; gamma-aminobutyrate permease K11735 gabP; GABA permease D PAM18_5211 putative amino acid permease K16234 hutT; histidine transporter D PAM18_5093 putative amino acid permease K02205 rocE; arginine/ornithine permease D PAM18_3003 putative amino acid permease K14052 puuP; putrescine importer D PAM18_1388 putative amino acid permease K14052 puuP; putrescine importer D PAM18_3839 putative amino acid permease K03758 arcD; arginine:ornithine antiporter / lysine permease D PAM18_5287 arcD; arginine/ornithine antiporter K03758 arcD; arginine:ornithine antiporter / lysine permease D PAM18_0917 putative transport protein K16238 eat; ethanolamine permease D PAM18_4913 putative amino acid permease K20265 gadC; glutamate:GABA antiporter D PAM18_0397 putative cation efflux system protein K16264 czcD; cobalt-zinc-cadmium efflux system protein D PAM18_0977 putative transporter K13283 fieF; ferrous-iron efflux pump FieF D PAM18_4558 putative heavy-metal transporter K07238 TC.ZIP; zinc transporter, ZIP family D PAM18_2519 czcA; Resistance-Nodulation-Cell Division (RND) divalent metal cation efflux transporter CzcA K15726 czcA; heavy metal efflux system protein D PAM18_4692 mexD; Resistance-Nodulation-Cell Division (RND) multidrug efflux transporter MexD K18296 mexD; multidrug efflux pump D PAM18_2545 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18299 mexF; multidrug efflux pump D PAM18_0732 mexG; hypothetical protein K18305 mexG; transmembrane protein D PAM18_0730 mexI; putative Resistance-Nodulation-Cell Division (RND) efflux transporter K18307 mexI; multidrug efflux pump D PAM18_1270 putative Resistance-Nodulation-Cell Division (RND) efflux transporter K18303 mexK; multidrug efflux pump D PAM18_3695 putative Resistance-Nodulation-Cell Division (RND) efflux transporter K21133 mexN; multidrug efflux pump D PAM18_3026 multidrug efflux protein K18095 mexY; multidrug efflux pump D PAM18_1464 putative Resistance-Nodulation-Cell Division (RND) efflux transporter K19594 gesB; gold/copper resistance efflux pump D PAM18_0426 mexB; Resistance-Nodulation-Cell Division (RND) multidrug efflux transporter MexB K18138 acrB; multidrug efflux pump D PAM18_4466 multidrug efflux protein K18138 acrB; multidrug efflux pump D PAM18_0159 putative Resistance-Nodulation-Cell Division (RND) efflux transporter K21134 triC; multidrug efflux pump D PAM18_2511 putative Resistance-Nodulation-Cell Division (RND) efflux transporter K07788 mdtB; multidrug efflux pump D PAM18_2512 putative Resistance-Nodulation-Cell Division (RND) efflux transporter K07789 mdtC; multidrug efflux pump D PAM18_5103 SMR multidrug efflux transporter K03297 emrE; small multidrug resistance pump D PAM18_4252 putative transporter K11741 sugE; quaternary ammonium compound-resistance protein SugE D PAM18_1704 putative transporter K11741 sugE; quaternary ammonium compound-resistance protein SugE D PAM18_3159 putative transporter K11741 sugE; quaternary ammonium compound-resistance protein SugE D PAM18_3508 putative drug efflux transporter K11743 mdtJ; spermidine export protein MdtJ D PAM18_5566 hypothetical protein K08978 TC.BAT1; bacterial/archaeal transporter family protein D PAM18_4888 hypothetical protein K15268 eamA; O-acetylserine/cysteine efflux transporter D PAM18_3542 hypothetical protein K11939 rhtA; inner membrane transporter RhtA D PAM18_0484 putative permease K05786 rarD; chloramphenicol-sensitive protein RarD D PAM18_1492 putative chloramphenicol-sensitive protein K05786 rarD; chloramphenicol-sensitive protein RarD D PAM18_1644 hypothetical protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D PAM18_4925 hypothetical protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D PAM18_1429 putative inner membrane protein K12962 arnE; undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnE D PAM18_1694 hypothetical protein K09771 TC.SMR3; small multidrug resistance family-3 protein D PAM18_2321 putative transporter K07084 yuiF; putative amino acid transporter D PAM18_3994 putative transporter K03299 TC.GNTP; gluconate:H+ symporter, GntP family D PAM18_2719 gluconate permease K03299 TC.GNTP; gluconate:H+ symporter, GntP family D PAM18_4878 lldP; L-lactate permease K03303 lutP; lactate permease D PAM18_1007 putative choline transporter K02168 betT; choline/glycine/proline betaine transport protein D PAM18_5412 putative choline transporter K02168 betT; choline/glycine/proline betaine transport protein D PAM18_5495 betT1; choline transporter BetT K02168 betT; choline/glycine/proline betaine transport protein D PAM18_4381 putative phosphate transporter K16322 pit; low-affinity inorganic phosphate transporter D PAM18_4255 putP; sodium/proline symporter PutP K11928 putP; sodium/proline symporter D PAM18_1737 actP; acetate permease K14393 actP; cation/acetate symporter D PAM18_5601 gltP; glutamate/aspartate:proton symporter K11102 gltP; proton glutamate symport protein D PAM18_3850 dctA; C4-dicarboxylate transporter DctA K11103 dctA; aerobic C4-dicarboxylate transport protein D PAM18_0121 C4-dicarboxylate transporter DctA K11103 dctA; aerobic C4-dicarboxylate transport protein D PAM18_3002 serine/threonine transporter SstT K07862 sstT; serine/threonine transporter D PAM18_1796 gltS; sodium/glutamate symporter GltS K03312 gltS; glutamate:Na+ symporter, ESS family D PAM18_3224 nhaB; sodium/proton antiporter K03314 nhaB; Na+:H+ antiporter, NhaB family D PAM18_1286 putative sodium/hydrogen antiporter K24163 nhaK; monovalent cation/hydrogen antiporter D PAM18_2906 putative transporter K24160 NHA1; sodium/hydrogen antiporter D PAM18_5136 potassium/proton antiporter K11105 cvrA; potassium/hydrogen antiporter D PAM18_1054 nhaP; Na+/H+ antiporter NhaP K03316 nhaP; Na+:H+ antiporter D PAM18_3826 kefB; glutathione-regulated potassium-efflux system protein KefB K11747 kefB; glutathione-regulated potassium-efflux system protein KefB D PAM18_5651 putative sodium/proton antiporter K26735 KEA4_5_6; K+:H+ antiporter D PAM18_5640 putative potassium efflux transporter K26735 KEA4_5_6; K+:H+ antiporter D PAM18_1761 trkH; potassium uptake protein TrkH K03498 trkH; trk/ktr system potassium uptake protein D PAM18_0016 trkA; potassium transporter peripheral membrane component K03499 trkA; trk/ktr system potassium uptake protein D PAM18_0438 codB; cytosine permease K10974 codB; cytosine permease D PAM18_4744 uraA; uracil permease K02824 uraA; uracil permease D PAM18_2024 putative transporter K24206 uacT; uric acid transporter D PAM18_3624 putative transporter K24206 uacT; uric acid transporter D PAM18_0350 putative transporter K16345 xanP; xanthine permease XanP D PAM18_0166 putative transporter K16345 xanP; xanthine permease XanP D PAM18_3612 putative transporter K06901 pbuG; adenine/guanine/hypoxanthine permease D PAM18_4826 putative transporter K06901 pbuG; adenine/guanine/hypoxanthine permease D PAM18_5554 mtr; tryptophan permease K03835 mtr; tryptophan-specific transport protein D PAM18_3395 putative transporter K05782 benE; benzoate membrane transport protein D PAM18_4378 putative transporter K07240 chrA; chromate transporter D PAM18_2474 putative sulfate transporter K03321 TC.SULP; sulfate permease, SulP family D PAM18_0029 putative sulfate transporter K03321 TC.SULP; sulfate permease, SulP family D PAM18_4228 manganese transport protein MntH K03322 mntH; manganese transport protein D PAM18_4424 manganese transport protein MntH K03322 mntH; manganese transport protein D PAM18_4710 putative c4-dicarboxylate-binding protein K11688 dctP; C4-dicarboxylate-binding protein DctP D PAM18_4155 putative C4-dicarboxylate-binding periplasmic protein K11688 dctP; C4-dicarboxylate-binding protein DctP D PAM18_5284 putative c4-dicarboxylate-binding protein K11688 dctP; C4-dicarboxylate-binding protein DctP D PAM18_4154 putative C4-dicarboxylate transporter K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit D PAM18_5285 putative dicarboxylate transporter K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit D PAM18_5286 putative C4-dicarboxylate transporter K11690 dctM; C4-dicarboxylate transporter, DctM subunit D PAM18_4153 putative C4-dicarboxylate transporter K11690 dctM; C4-dicarboxylate transporter, DctM subunit D PAM18_1158 putative transporter K21393 yiaN; TRAP-type transport system large permease protein D PAM18_1160 putative TRAP-type C4-dicarboxylate transport K21395 yiaO; TRAP-type transport system periplasmic protein D PAM18_4933 putative Na+/phosphate symporter K03324 yjbB; phosphate:Na+ symporter D PAM18_5595 putative Na+/Pi symporter K03324 yjbB; phosphate:Na+ symporter D PAM18_2762 arsB; ArsB protein K03893 arsB; arsenical pump membrane protein D PAM18_3990 putative monovalent cation/H+ antiporter subunit A K05559 phaA; multicomponent K+:H+ antiporter subunit A D PAM18_3989 putative monovalent cation/H+ antiporter subunit C K05560 phaC; multicomponent K+:H+ antiporter subunit C D PAM18_3988 putative monovalent cation/H+ antiporter subunit D K05561 phaD; multicomponent K+:H+ antiporter subunit D D PAM18_3987 putative monovalent cation/H+ antiporter subunit E K05562 phaE; multicomponent K+:H+ antiporter subunit E D PAM18_3986 putative monovalent cation/H+ antiporter subunit F K05563 phaF; multicomponent K+:H+ antiporter subunit F D PAM18_3985 putative monovalent cation/H+ antiporter subunit G K05564 phaG; multicomponent K+:H+ antiporter subunit G D PAM18_4655 putative virulence factor, membrane protein K03980 murJ; putative peptidoglycan lipid II flippase D PAM18_5587 putative permease K13936 mdcF; malonate transporter and related proteins D PAM18_3311 putative permease K24180 mleP; malate permease and related proteins D PAM18_0188 hypothetical protein K24180 mleP; malate permease and related proteins D PAM18_4122 kup; potassium uptake protein Kup K03549 kup; KUP system potassium uptake protein D PAM18_4456 putative transporter K06895 lysE; L-lysine exporter family protein LysE/ArgO D PAM18_5368 putative LysE family efflux protein K05834 rhtB; homoserine/homoserine lactone efflux protein D PAM18_1281 putative transporter, LysE family K05834 rhtB; homoserine/homoserine lactone efflux protein D PAM18_3427 putative threonine efflux protein K05835 rhtC; threonine efflux protein D PAM18_5461 putative threonine efflux protein K05835 rhtC; threonine efflux protein D PAM18_2262 putative threonine efflux protein K05835 rhtC; threonine efflux protein D PAM18_2032 putative threonine efflux protein K05835 rhtC; threonine efflux protein D PAM18_4865 leucine export protein LeuE K11250 leuE; leucine efflux protein D PAM18_0417 chpE; putative chemotaxis protein K06600 chpE; chemosensory pili system protein ChpE D PAM18_3005 putative branched-chain amino acid transport protein AzlC K26605 azlC; branched chain amino acid efflux pump D PAM18_3006 hypothetical protein K26606 azlD; branched chain amino acid efflux pump D PAM18_4287 hypothetical protein K07793 tctA; putative tricarboxylic transport membrane protein D PAM18_2828 putative integral membrane protein K07793 tctA; putative tricarboxylic transport membrane protein D PAM18_4286 hypothetical protein K07794 tctB; putative tricarboxylic transport membrane protein D PAM18_2827 hypothetical protein K07794 tctB; putative tricarboxylic transport membrane protein D PAM18_4285 hypothetical protein K07795 tctC; putative tricarboxylic transport membrane protein D PAM18_2826 hypothetical protein K07795 tctC; putative tricarboxylic transport membrane protein D PAM18_4041 hypothetical protein K03548 perM; putative permease D PAM18_0013 hypothetical protein K09125 yhhQ; queuosine precursor transporter D PAM18_1087 hypothetical protein K22736 VIT; vacuolar iron transporter family protein D PAM18_4968 putative membrane protein, MarC family K05595 marC; multiple antibiotic resistance protein D PAM18_5323 multiple drug resistance protein MarC K05595 marC; multiple antibiotic resistance protein D PAM18_4504 ftsW; cell division protein FtsW K03588 ftsW; cell division protein FtsW D PAM18_4724 hypothetical protein K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family D PAM18_2052 hypothetical protein K23242 mntP; manganese efflux pump family protein D PAM18_5367 putative iron permease protein K07243 FTR; high-affinity iron transporter D PAM18_4700 carbon starvation protein K23676 btsT; pyruvate/proton symporter D PAM18_0198 tonB2; putative TonB protein K03832 tonB; periplasmic protein TonB D PAM18_0406 putative tonB domain protein K03832 tonB; periplasmic protein TonB D PAM18_5653 tonB; TonB protein K03832 tonB; periplasmic protein TonB D PAM18_4343 hypothetical protein K03832 tonB; periplasmic protein TonB D PAM18_4064 oprL; Peptidoglycan associated lipoprotein OprL precursor K03640 pal; peptidoglycan-associated lipoprotein D PAM18_4066 tolA; TolA protein K03646 tolA; colicin import membrane protein D PAM18_4065 tolB; translocation protein TolB K03641 tolB; TolB protein D PAM18_0203 mdcA; malonate decarboxylase alpha subunit K13929 mdcA; malonate decarboxylase alpha subunit [EC:2.3.1.187] D PAM18_0205 mdcC; malonate decarboxylase subunit delta K13931 mdcC; malonate decarboxylase delta subunit D PAM18_1067 narG; respiratory nitrate reductase alpha chain K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-] D PAM18_1068 narH; respiratory nitrate reductase beta chain K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-] D PAM18_1070 narI; respiratory nitrate reductase gamma chain K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-] D PAM18_1827 putative secretion protein K03543 emrA; membrane fusion protein, multidrug efflux system D PAM18_2127 putative secretion protein K03543 emrA; membrane fusion protein, multidrug efflux system D PAM18_3796 putative multidrug resistance efflux pump K03543 emrA; membrane fusion protein, multidrug efflux system D PAM18_5275 multidrug resistance protein K03543 emrA; membrane fusion protein, multidrug efflux system D PAM18_3784 aprE; alkaline protease secretion protein AprE K12537 hasE; membrane fusion protein, type I secretion system D PAM18_1561 hasE; metalloprotease secretion protein K12537 hasE; membrane fusion protein, type I secretion system D PAM18_2518 czcB; Resistance-Nodulation-Cell Division (RND) divalent metal cation efflux membrane fusion protein CzcB precursor K15727 czcB; membrane fusion protein, heavy metal efflux system D PAM18_3164 putative secretion protein K12542 lapC; membrane fusion protein, adhesin transport system D PAM18_0795 putative secretion protein K13408 cvaA; membrane fusion protein D PAM18_4693 mexC; Resistance-Nodulation-Cell Division (RND) multidrug efflux membrane fusion protein MexC precursor K18295 mexC; membrane fusion protein, multidrug efflux system D PAM18_2546 mexE; Resistance-Nodulation-Cell Division (RND) multidrug efflux membrane fusion protein MexE precursor K18298 mexE; membrane fusion protein, multidrug efflux system D PAM18_0731 mexH; putative Resistance-Nodulation-Cell Division (RND) efflux membrane fusion protein precursor K18306 mexH; membrane fusion protein, multidrug efflux system D PAM18_1269 putative Resistance-Nodulation-Cell Division (RND) efflux membrane fusion protein precursor K18302 mexJ; membrane fusion protein, multidrug efflux system D PAM18_3696 putative Resistance-Nodulation-Cell Division (RND) efflux membrane fusion protein precursor K21135 mexM; membrane fusion protein, multidrug efflux system D PAM18_3025 periplasmic multidrug efflux lipoprotein precursor K18094 mexX; membrane fusion protein, multidrug efflux system D PAM18_1463 putative Resistance-Nodulation-Cell Division (RND) efflux membrane fusion protein precursor K19595 gesA; membrane fusion protein, gold/copper resistance efflux system D PAM18_0425 mexA; Resistance-Nodulation-Cell Division (RND) multidrug efflux membrane fusion protein MexA precursor K03585 acrA; membrane fusion protein, multidrug efflux system D PAM18_4465 putative Resistance-Nodulation-Cell Division (RND) efflux membrane fusion protein precursor K03585 acrA; membrane fusion protein, multidrug efflux system D PAM18_0157 putative Resistance-Nodulation-Cell Division (RND) efflux membrane fusion protein precursor K21136 triA; membrane fusion protein, multidrug efflux system D PAM18_0158 putative Resistance-Nodulation-Cell Division (RND) efflux membrane fusion protein precursor K21137 triB; membrane fusion protein, multidrug efflux system D PAM18_2510 putative Resistance-Nodulation-Cell Division (RND) efflux membrane fusion protein precursor K07799 mdtA; membrane fusion protein, multidrug efflux system D PAM18_2652 putative ABC export system, membrane fusion protein K13888 macA; membrane fusion protein, macrolide-specific efflux system D PAM18_3087 putative transporter K03811 pnuC; nicotinamide mononucleotide transporter D PAM18_4449 feoA; ferrous iron transport protein A K04758 feoA; ferrous iron transport protein A D PAM18_4448 feoB; ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B D PAM18_4447 hypothetical protein K07490 feoC; ferrous iron transport protein C D PAM18_3652 ccmF; cytochrome C-type biogenesis protein CcmF K02198 ccmF; cytochrome c-type biogenesis protein CcmF D PAM18_2480 putative transport protein K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein D PAM18_4730 putative magnesium transporter, MgtC family K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein D PAM18_2890 putative Mg(2+) transporter K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein D PAM18_3613 putative transthyretin family protein K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17] C 02044 Secretion system [BR:paf02044] D PAM18_0793 putative outer membrane protein precursor K12340 tolC; outer membrane protein D PAM18_5085 putative outer membrane protein precursor K12340 tolC; outer membrane protein D PAM18_4685 putative outer membrane protein precursor K12340 tolC; outer membrane protein D PAM18_1560 hasD; transport protein HasD K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D PAM18_3785 aprD; alkaline protease secretion protein AprD K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D PAM18_3784 aprE; alkaline protease secretion protein AprE K12537 hasE; membrane fusion protein, type I secretion system D PAM18_1561 hasE; metalloprotease secretion protein K12537 hasE; membrane fusion protein, type I secretion system D PAM18_1562 putative outer membrane protein precursor K12538 hasF; outer membrane protein, type I secretion system D PAM18_3783 aprF; Alkaline protease secretion outer membrane protein AprF precursor K12538 hasF; outer membrane protein, type I secretion system D PAM18_3165 putative ATP-binding/permease fusion ABC transporter K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB D PAM18_3164 putative secretion protein K12542 lapC; membrane fusion protein, adhesin transport system D PAM18_3166 putative outer membrane protein precursor K12543 lapE; outer membrane protein, adhesin transport system D PAM18_0795 putative secretion protein K13408 cvaA; membrane fusion protein D PAM18_0794 putative toxin transporter K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB D PAM18_4359 hypothetical protein K02452 gspC; general secretion pathway protein C D PAM18_3174 xphA; XphA K02452 gspC; general secretion pathway protein C D PAM18_1859 xcpP; secretion protein XcpP K02452 gspC; general secretion pathway protein C D PAM18_4353 putative type II secretion system protein K02453 gspD; general secretion pathway protein D D PAM18_3173 xqhA; secretion protein XqhA K02453 gspD; general secretion pathway protein D D PAM18_1858 xcpQ; general secretion pathway protein D K02453 gspD; general secretion pathway protein D D PAM18_4352 putative type II secretion system protein K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D PAM18_1860 xcpR; general secretion pathway protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D PAM18_5328 putative secretion pathway ATPase K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D PAM18_4351 putative type II secretion system protein K02455 gspF; general secretion pathway protein F D PAM18_1861 xcpS; general secretion pathway protein F K02455 gspF; general secretion pathway protein F D PAM18_2297 putative type II secretion system protein K02455 gspF; general secretion pathway protein F D PAM18_4357 HxcT pseudopilin K02456 gspG; general secretion pathway protein G D PAM18_2298 putative type II secretion system protein K02456 gspG; general secretion pathway protein G D PAM18_2299 putative type II secretion system protein K02456 gspG; general secretion pathway protein G D PAM18_1862 xcpT; general secretion pathway protein G K02456 gspG; general secretion pathway protein G D PAM18_4360 HxcU putative pseudopilin K02457 gspH; general secretion pathway protein H D PAM18_1863 xcpU; General secretion pathway outer membrane protein H precursor K02457 gspH; general secretion pathway protein H D PAM18_4358 HxcV putative pseudopilin K02458 gspI; general secretion pathway protein I D PAM18_2300 putative type II secretion system protein K02458 gspI; general secretion pathway protein I D PAM18_1864 xcpV; general secretion pathway protein I K02458 gspI; general secretion pathway protein I D PAM18_4361 HxcW putative pseudopilin K02459 gspJ; general secretion pathway protein J D PAM18_2301 putative type II secretion system protein K02459 gspJ; general secretion pathway protein J D PAM18_1865 xcpW; general secretion pathway protein J K02459 gspJ; general secretion pathway protein J D PAM18_4356 HxcX atypical pseudopilin K02460 gspK; general secretion pathway protein K D PAM18_1866 xcpX; general secretion pathway protein K K02460 gspK; general secretion pathway protein K D PAM18_4355 type II secretion system protein K02461 gspL; general secretion pathway protein L D PAM18_1867 xcpY; general secretion pathway protein L K02461 gspL; general secretion pathway protein L D PAM18_4354 putative type II secretion system protein K02462 gspM; general secretion pathway protein M D PAM18_1868 xcpZ; general secretion pathway protein M K02462 gspM; general secretion pathway protein M D PAM18_4620 pilD; type 4 prepilin peptidase PilD K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D PAM18_4617 pilA; type 4 fimbrial precursor PilA K02650 pilA; type IV pilus assembly protein PilA D PAM18_4618 pilB; type 4 fimbrial biogenesis protein PilB K02652 pilB; type IV pilus assembly protein PilB D PAM18_4649 pilE; type 4 fimbrial biogenesis protein PilE K02655 pilE; type IV pilus assembly protein PilE D PAM18_1133 pilF; type 4 fimbrial biogenesis protein PilF K02656 pilF; type IV pilus assembly protein PilF D PAM18_0408 pilG; twitching motility protein PilG K02657 pilG; twitching motility two-component system response regulator PilG D PAM18_0409 pilH; twitching motility protein PilH K02658 pilH; twitching motility two-component system response regulator PilH D PAM18_0410 pilI; twitching motility protein PilI K02659 pilI; twitching motility protein PilI D PAM18_0411 pilJ; twitching motility protein PilJ K02660 pilJ; twitching motility protein PilJ D PAM18_0412 pilK; methyltransferase PilK K02661 pilK; type IV pilus assembly protein PilK D PAM18_5159 pilM; type 4 fimbrial biogenesis protein PilM K02662 pilM; type IV pilus assembly protein PilM D PAM18_5158 pilN; type 4 fimbrial biogenesis protein PilN K02663 pilN; type IV pilus assembly protein PilN D PAM18_5157 pilO; type 4 fimbrial biogenesis protein PilO K02664 pilO; type IV pilus assembly protein PilO D PAM18_5156 pilP; type 4 fimbrial biogenesis protein PilP K02665 pilP; type IV pilus assembly protein PilP D PAM18_5155 pilQ; Type 4 fimbrial biogenesis outer membrane protein PilQ precursor K02666 pilQ; type IV pilus assembly protein PilQ D PAM18_0395 pilT; twitching motility protein PilT K02669 pilT; twitching motility protein PilT D PAM18_0396 pilU; twitching motility protein PilU K02670 pilU; twitching motility protein PilU D PAM18_4644 pilV; type 4 fimbrial biogenesis protein PilV K02671 pilV; type IV pilus assembly protein PilV D PAM18_4645 pilW; type 4 fimbrial biogenesis protein PilW K02672 pilW; type IV pilus assembly protein PilW D PAM18_4646 pilX; type 4 fimbrial biogenesis protein PilX K02673 pilX; type IV pilus assembly protein PilX D PAM18_4647 pilY1; type 4 fimbrial biogenesis protein PilY1 K02674 pilY1; type IV pilus assembly protein PilY1 D PAM18_2001 pilZ; type 4 fimbrial biogenesis protein PilZ K02676 pilZ; type IV pilus assembly protein PilZ D PAM18_3222 pilin biosynthetic protein K27041 fimL; scaffold protein FimL D PAM18_4642 fimT; type 4 fimbrial biogenesis protein FimT K08084 fimT; type IV fimbrial biogenesis protein FimT D PAM18_4643 fimU; type 4 fimbrial biogenesis protein FimU K08085 fimU; type IV fimbrial biogenesis protein FimU D PAM18_1848 fimV; Motility protein FimV K08086 fimV; pilus assembly protein FimV D PAM18_4384 fppA; Flp prepilin peptidase A, FppA K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D PAM18_4394 rcpC; RcpC K02279 cpaB; pilus assembly protein CpaB D PAM18_4393 rcpA; RcpA K02280 cpaC; pilus assembly protein CpaC D PAM18_4392 tadZ; TadZ K02282 cpaE; pilus assembly protein CpaE D PAM18_4391 tadA; TadA ATPase K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D PAM18_4390 tadB; TadB K12510 tadB; tight adherence protein B D PAM18_4389 tadC; TadC K12511 tadC; tight adherence protein C D PAM18_4388 tadD; TadD K27079 tadD; tight adherence protein D D PAM18_4386 tadG; TadG K27080 tadG; tight adherence protein G D PAM18_4395 flp; Type IVb pilin, Flp K02651 flp; pilus assembly protein Flp/PilA D PAM18_0392 putative YGGT family protein K02221 yggT; YggT family protein D PAM18_1823 putative competence protein K02237 comEA; competence protein ComEA D PAM18_1977 putative competence protein K02238 comEC; competence protein ComEC D PAM18_3330 pscC; Type III secretion outer membrane protein PscC precursor K03219 yscC; type III secretion protein C D PAM18_3329 pscD; type III export protein PscD K03220 yscD; type III secretion protein D D PAM18_3327 pscF; type III export protein PscF K03221 yscF; type III secretion protein F D PAM18_3324 pscI; type III export protein PscI K04053 yscI; type III secretion protein I D PAM18_3323 pscJ; type III export protein PscJ K03222 yscJ; type III secretion protein J D PAM18_3322 pscK; type III export protein PscK K04054 yscK; type III secretion protein K D PAM18_3321 pscL; type III secretion system protein K03223 yscL; type III secretion protein L D PAM18_3349 type III secretion system ATPase K03224 yscN; ATP synthase in type III secretion protein N [EC:7.4.2.8] D PAM18_3350 pscO; translocation protein in type III secretion K04056 yscO; type III secretion protein O D PAM18_3351 pscP; translocation protein in type III secretion K04057 yscP; type III secretion protein P D PAM18_3352 pscQ; type III secretion system protein K03225 yscQ; type III secretion protein Q D PAM18_3353 pscR; type III secretion system protein K03226 yscR; type III secretion protein R D PAM18_3354 putative translocation protein in type III secretion K03227 yscS; type III secretion protein S D PAM18_3355 pscT; translocation protein in type III secretion K03228 yscT; type III secretion protein T D PAM18_3356 pscU; translocation protein in type III secretion K03229 yscU; type III secretion protein U D PAM18_3343 pcrD; type III secretory apparatus protein PcrD K03230 yscV; type III secretion protein V D PAM18_3348 popN; Type III secretion outer membrane protein PopN precursor K04058 yscW; type III secretion protein W D PAM18_3345 hypothetical protein in type III secretion K04059 yscX; type III secretion protein X D PAM18_3331 pscB; type III export apparatus protein K04049 yscB; type III secretion protein B D PAM18_3328 pscE; type III export protein PscE K04050 yscE; type III secretion protein E D PAM18_3326 pscG; type III export protein PscG K04051 yscG; type III secretion protein G D PAM18_3325 pscH; type III export protein PscH K04052 yscH; type III secretion protein H D PAM18_3344 hypothetical protein in type III secretion K04060 yscY; type III secretion protein Y D PAM18_3679 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D PAM18_3682 flhB; flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D PAM18_3659 putative FlhB domain protein K04061 flhB2; flagellar biosynthesis protein D PAM18_3933 fliF; flagellar MS-ring protein K02409 fliF; flagellar M-ring protein FliF D PAM18_3931 fliH; flagellar assembly protein H K02411 fliH; flagellar assembly protein FliH D PAM18_3930 fliI; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D PAM18_3687 fliN; flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN D PAM18_3686 fliO; flagellar protein FliO K02418 fliO; flagellar protein FliO/FliZ D PAM18_3685 fliP; flagellar biosynthesis protein FliP K02419 fliP; flagellar biosynthesis protein FliP D PAM18_3684 fliQ; flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D PAM18_3683 fliR; flagellar biosynthesis protein FliR K02421 fliR; flagellar biosynthesis protein FliR D PAM18_1208 dsbC; thiol:disulfide interchange protein DsbC K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1] D PAM18_1451 putative serine protease K12685 ssp; subtilase-type serine protease [EC:3.4.21.-] D PAM18_5226 estA; esterase EstA K12686 apeE; outer membrane lipase/esterase D PAM18_2680 hypothetical protein K11891 impL; type VI secretion system protein ImpL D PAM18_3378 hypothetical protein K11891 impL; type VI secretion system protein ImpL D PAM18_0079 icmF1; IcmF1 K11891 impL; type VI secretion system protein ImpL D PAM18_2679 hypothetical protein K11892 impK; type VI secretion system protein ImpK D PAM18_3379 putative outer membrane protein K11892 impK; type VI secretion system protein ImpK D PAM18_0080 hypothetical protein K11892 impK; type VI secretion system protein ImpK D PAM18_2678 hypothetical protein K11893 impJ; type VI secretion system protein ImpJ D PAM18_3380 hypothetical protein K11893 impJ; type VI secretion system protein ImpJ D PAM18_0081 hypothetical protein K11893 impJ; type VI secretion system protein ImpJ D PAM18_2671 hypothetical protein K11895 impH; type VI secretion system protein ImpH D PAM18_3385 hypothetical protein K11895 impH; type VI secretion system protein ImpH D PAM18_0091 hypothetical protein K11895 impH; type VI secretion system protein ImpH D PAM18_2672 hypothetical protein K11896 impG; type VI secretion system protein ImpG D PAM18_3386 hypothetical protein K11896 impG; type VI secretion system protein ImpG D PAM18_0090 hypothetical protein K11896 impG; type VI secretion system protein ImpG D PAM18_0089 hypothetical protein K11897 impF; type VI secretion system protein ImpF D PAM18_2675 hypothetical protein K11900 impC; type VI secretion system protein ImpC D PAM18_3388 hypothetical protein K11900 impC; type VI secretion system protein ImpC D PAM18_0086 hypothetical protein K11900 impC; type VI secretion system protein ImpC D PAM18_2676 hypothetical protein K11901 impB; type VI secretion system protein ImpB D PAM18_3389 hypothetical protein K11901 impB; type VI secretion system protein ImpB D PAM18_0085 hypothetical protein K11901 impB; type VI secretion system protein ImpB D PAM18_2681 hypothetical protein K11902 impA; type VI secretion system protein ImpA D PAM18_0084 hypothetical protein K11902 impA; type VI secretion system protein ImpA D PAM18_2674 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp D PAM18_3619 hcpB; secreted protein Hcp K11903 hcp; type VI secretion system secreted protein Hcp D PAM18_0258 hcpB; secreted protein Hcp K11903 hcp; type VI secretion system secreted protein Hcp D PAM18_0087 hcp1; Hcp1 K11903 hcp; type VI secretion system secreted protein Hcp D PAM18_5387 hcpB; secreted protein Hcp K11903 hcp; type VI secretion system secreted protein Hcp D PAM18_5204 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG D PAM18_3620 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG D PAM18_0257 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG D PAM18_1674 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG D PAM18_5386 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG D PAM18_0097 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG D PAM18_0093 vgrG1; VgrG1 K11904 vgrG; type VI secretion system secreted protein VgrG D PAM18_2287 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG D PAM18_2668 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG D PAM18_3387 hypothetical protein K11905 K11905; type VI secretion system protein D PAM18_3381 putative lipoprotein K11906 vasD; type VI secretion system protein VasD D PAM18_0082 hypothetical protein K11906 vasD; type VI secretion system protein VasD D PAM18_2670 putative ClpA/B-type protease K11907 vasG; type VI secretion system protein VasG D PAM18_3384 putative ClpA/B-type protease K11907 vasG; type VI secretion system protein VasG D PAM18_0092 clpV1; ClpV1 K11907 vasG; type VI secretion system protein VasG D PAM18_3390 hypothetical protein K11910 vasJ; type VI secretion system protein VasJ D PAM18_0078 hypothetical protein K11890 impM; type VI secretion system protein ImpM D PAM18_3382 hypothetical protein K11894 impI; type VI secretion system protein ImpI D PAM18_0088 hypothetical protein K11898 impE; type VI secretion system protein ImpE D PAM18_0083 fha1; Fha1 K11913 fha1; type VI secretion system protein D PAM18_3383 putative transcriptional regulator K11914 sfa2; sigma-54 dependent transcriptional regulator D PAM18_3377 stp1; serine/threonine phosphoprotein phosphatase Stp1 K11915 stp1; serine/threonine protein phosphatase Stp1 [EC:3.1.3.16] D PAM18_0077 pppA; PppA K11915 stp1; serine/threonine protein phosphatase Stp1 [EC:3.1.3.16] D PAM18_3376 stk1; serine-threonine kinase Stk1 K11916 stk1; serine/threonine-protein kinase Stk1 [EC:2.7.11.-] D PAM18_2682 putative transcriptional regulator K11917 sfa3; sigma-54 dependent transcriptional regulator D PAM18_2677 hypothetical protein K11918 lip3; type VI secretion system protein D PAM18_2673 hypothetical protein K11919 hsiF3; type VI secretion system lysozyme-related protein D PAM18_2913 cupA1; fimbrial subunit CupA1 K07345 fimA; major type 1 subunit fimbrin (pilin) D PAM18_0854 cupB1; putative fimbrial subunit CupB1 K07345 fimA; major type 1 subunit fimbrin (pilin) D PAM18_4056 cupC1; fimbrial subunit CupC1 K07345 fimA; major type 1 subunit fimbrin (pilin) D PAM18_2912 cupA2; chaperone CupA2 K07346 fimC; fimbrial chaperone protein D PAM18_4748 putative pili assembly chaperone K07346 fimC; fimbrial chaperone protein D PAM18_2911 cupA3; usher CupA3 K07347 fimD; outer membrane usher protein D PAM18_4054 cupC3; usher CupC3 K07347 fimD; outer membrane usher protein D PAM18_0856 cupB3; usher CupB3 K07347 fimD; outer membrane usher protein D PAM18_4749 putative type 1 pili usher protein CsuD K07347 fimD; outer membrane usher protein D PAM18_4745 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D PAM18_4746 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D PAM18_4750 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D PAM18_4747 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D PAM18_4494 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D PAM18_5242 secB; preprotein translocase subunit SecB K03071 secB; preprotein translocase subunit SecB D PAM18_1117 secD; preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D PAM18_0654 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D PAM18_1118 secF; preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D PAM18_4855 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D PAM18_0687 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D PAM18_1199 ffh; signal recognition particle protein Ffh K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D PAM18_0372 ftsY; signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor D PAM18_1116 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D PAM18_5696 putative inner membrane protein translocase component YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D PAM18_5183 tatA; twin arginine translocase protein A K03116 tatA; sec-independent protein translocase protein TatA D PAM18_5184 tatB; sec-independent translocase K03117 tatB; sec-independent protein translocase protein TatB D PAM18_5185 tatC; transport protein TatC K03118 tatC; sec-independent protein translocase protein TatC C 02042 Bacterial toxins [BR:paf02042] D PAM18_3883 toxA; exotoxin A precursor K11020 toxA; exotoxin A [EC:2.4.2.-] D PAM18_1097 exoS; exoenzyme S K16635 exoS; exoenzyme S D PAM18_0046 exoT; exoenzyme T K16636 exoT; exoenzyme T D PAM18_2845 exoY; adenylate cyclase ExoY K16637 K16637; adenylate cyclase ExoY D PAM18_4314 hypothetical protein of bacteriophage Pf1 K10954 zot; zona occludens toxin D PAM18_4773 hypothetical protein of bacteriophage Pf1 K10954 zot; zona occludens toxin D PAM18_5482 putative metal ion transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family D PAM18_1197 putative hemolysin containing a CBS domain K03699 tlyC; magnesium and cobalt exporter, CNNM family D PAM18_4944 putative hemolyin III K11068 hlyIII; hemolysin III D PAM18_4196 plcH; hemolytic phospholipase C precursor K01114 plc; phospholipase C [EC:3.1.4.3] D PAM18_1646 plcN; non-hemolytic phospholipase C precursor K01114 plc; phospholipase C [EC:3.1.4.3] D PAM18_2842 hcnA; hydrogen cyanide synthase HcnA K10814 hcnA; hydrogen cyanide synthase HcnA [EC:1.4.99.5] D PAM18_2841 hcnB; hydrogen cyanide synthase HcnB K10815 hcnB; hydrogen cyanide synthase HcnB [EC:1.4.99.5] D PAM18_2840 hcnC; hydrogen cyanide synthase HcnC K10816 hcnC; hydrogen cyanide synthase HcnC [EC:1.4.99.5] C 02022 Two-component system [BR:paf02022] D PAM18_5481 phoR; two-component sensor PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D PAM18_5480 phoB; two-component response regulator PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D PAM18_3853 phoQ; two-component sensor PhoQ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D PAM18_3854 phoP; two-component response regulator PhoP K07660 phoP; two-component system, OmpR family, response regulator PhoP D PAM18_5318 envZ; two-component sensor EnvZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D PAM18_5319 ompR; osmolarity response regulator K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D PAM18_3875 putative two-component sensor K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3] D PAM18_3876 putative two-component response regulator K07661 rstA; two-component system, OmpR family, response regulator RstA D PAM18_1767 putative two-component response regulator K07662 cpxR; two-component system, OmpR family, response regulator CpxR D PAM18_0463 creC; sensory histidine kinase CreC K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3] D PAM18_0462 creB; DNA-binding response regulator CreB K07663 creB; two-component system, OmpR family, catabolic regulation response regulator CreB D PAM18_3693 putative two-component sensor K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D PAM18_2153 copS; two-component sensor, CopS K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D PAM18_2515 putative two-component sensor K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D PAM18_4998 putative two-component sensor K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D PAM18_3694 putative two-component response regulator K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D PAM18_2516 putative two-component response regulator K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D PAM18_4997 irlR; two-component response regulator K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D PAM18_2154 copR; two-component response regulator, CopR K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D PAM18_4885 pmrB; PmrB: two-component regulator system signal sensor kinase PmrB K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3] D PAM18_2559 putative two-component sensor K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3] D PAM18_4884 pmrA; PmrA: two-component regulator system response regulator PmrA K07666 qseB; two-component system, OmpR family, response regulator QseB D PAM18_2560 putative two-component response regulator K07666 qseB; two-component system, OmpR family, response regulator QseB D PAM18_3411 kdpD; two-component sensor KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D PAM18_3410 kdpE; two-component response regulator KdpE K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D PAM18_4282 putative two-component sensor K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D PAM18_4283 putative two-component response regulator K07774 tctD; two-component system, OmpR family, response regulator TctD D PAM18_3246 putative two-component sensor K18072 parS; two-component system, OmpR family, sensor kinase ParS [EC:2.7.13.3] D PAM18_3245 putative two-component response regulator K18073 parR; two-component system, OmpR family, response regulator ParR D PAM18_2285 pfeS; two-component sensor PfeS K19609 pfeS; two-component system, OmpR family, sensor histidine kinase PfeS [EC:2.7.13.3] D PAM18_4109 two-component sensor K19609 pfeS; two-component system, OmpR family, sensor histidine kinase PfeS [EC:2.7.13.3] D PAM18_4110 two-component response regulator K19610 pfeR; two-component system, OmpR family, response regulator PfeR D PAM18_2286 pfeR; two-component response regulator PfeR K19610 pfeR; two-component system, OmpR family, response regulator PfeR D PAM18_1765 putative two-component sensor K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D PAM18_0838 putative two-component response regulator K02483 K02483; two-component system, OmpR family, response regulator D PAM18_1780 gltR; two-component response regulator GltR K02483 K02483; two-component system, OmpR family, response regulator D PAM18_2317 putative two-component response regulator K02483 K02483; two-component system, OmpR family, response regulator D PAM18_1064 narX; two-component sensor NarX K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3] D PAM18_1063 narL; transcriptional regulator NarL K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL D PAM18_2665 putative transcriptional regulator K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL D PAM18_0860 putative response regulator K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB D PAM18_1232 putative two-component response regulator K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB D PAM18_2063 putative transcriptional regulator K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB D PAM18_4111 gacS; sensor/response regulator hybrid K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3] D PAM18_2407 gacA; response regulator GacA K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY D PAM18_0994 putative two-component sensor K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3] D PAM18_2410 putative sensor/response regulator hybrid K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3] D PAM18_1915 putative two-component response regulator K07690 evgA; two-component system, NarL family, response regulator EvgA D PAM18_0035 putative two-component response regulator K07690 evgA; two-component system, NarL family, response regulator EvgA D PAM18_0992 rocA1; two-component response regulator RocA1 K07690 evgA; two-component system, NarL family, response regulator EvgA D PAM18_4382 pprA; two-component sensor PprA K27076 pprA; two-component system, NarL family, sensor histidine kinase PprA [EC:2.7.13.3] D PAM18_4385 pprB; two-component response regulator, PprB K27077 pprB; two-component system, NarL family, response regulator PprB D PAM18_5382 algZ; alginate biosynthesis protein AlgZ/FimS K08082 algZ; two-component system, LytTR family, sensor histidine kinase AlgZ [EC:2.7.13.3] D PAM18_5381 algR; alginate biosynthesis regulatory protein AlgR K08083 algR; two-component system, LytTR family, response regulator AlgR D PAM18_5238 ntrB; two-component sensor NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D PAM18_5239 ntrC; two-component response regulator NtrC K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG D PAM18_4834 cbrB; two-component response regulator CbrB K07713 zraR; two-component system, NtrC family, response regulator HydG D PAM18_4639 pilS; two-component sensor PilS K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3] D PAM18_4640 pilR; two-component response regulator PilR K02667 pilR; two-component system, NtrC family, response regulator PilR D PAM18_5633 putative two-component sensor K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D PAM18_5282 putative two-component sensor K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D PAM18_5283 putative two-component response regulator K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD D PAM18_5632 putative two-component response regulator K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD D PAM18_5605 putative two-component sensor K11383 kinB; two-component system, NtrC family, sensor histidine kinase KinB [EC:2.7.13.3] D PAM18_5604 algB; two-component response regulator AlgB K11384 algB; two-component system, NtrC family, response regulator AlgB D PAM18_2421 putative two-component sensor K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D PAM18_0178 putative two-component sensor K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D PAM18_3673 putative two-component sensor K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D PAM18_0179 putative two-component response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D PAM18_3675 cheY; two-component response regulator CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D PAM18_0173 chemotaxis-specific methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D PAM18_3672 chemotaxis-specific methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D PAM18_1616 putative chemotaxis protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D PAM18_0413 chpA; putative component of chemotactic signal transduction system K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator) D PAM18_0408 pilG; twitching motility protein PilG K02657 pilG; twitching motility two-component system response regulator PilG D PAM18_0409 pilH; twitching motility protein PilH K02658 pilH; twitching motility two-component system response regulator PilH D PAM18_0414 chpB; putative methylesterase K06597 chpB; chemosensory pili system protein ChpB (putative protein-glutamate methylesterase) D PAM18_1242 putative chemotaxis sensor/effector fusion protein K13490 wspE; two-component system, chemotaxis family, sensor histidine kinase and response regulator WspE D PAM18_1244 wspR; putative two-component response regulator K11444 wspR; two-component system, chemotaxis family, response regulator WspR [EC:2.7.7.65] D PAM18_1243 wspF; chemotaxis-specific methylesterase K13491 wspF; two-component system, chemotaxis family, response regulator WspF [EC:3.1.1.61] D PAM18_0741 putative two-component response regulator K14987 fixJ; two-component system, LuxR family, response regulator FixJ D PAM18_3936 fleS; two-component sensor K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3] D PAM18_3935 fleR; two-component response regulator K10943 flrC; two-component system, response regulator FlrC D PAM18_3566 putative two-component sensor K17060 aauS; two-component system, sensor histidine kinase AauS [EC:2.7.13.3] D PAM18_3567 putative two-component response regulator K17061 aauR; two-component system, response regulator AauR D PAM18_4585 putative two-component sensor K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] D PAM18_4584 putative two-component response regulator K15012 regA; two-component system, response regulator RegA D PAM18_2139 putative sensor/response regulator hybrid K20973 sagS; two-component system, sensor histidine kinase SagS [EC:2.7.13.3] D PAM18_3436 putative sensor/response regulator hybrid K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3] D PAM18_3069 putative two-component sensor K20975 K20975; two-component system, sensor histidine kinase [EC:2.7.13.3] D PAM18_1620 putative histidine-containing phosphotransfer (HPt) domain K20976 hptB; histidine phosphotransfer protein HptB D PAM18_4057 hypothetical protein K20976 hptB; histidine phosphotransfer protein HptB D PAM18_1619 putative two-component response regulator K20977 hsbR; two-component system, HptB-dependent secretion and biofilm response regulator D PAM18_3260 nasS; nitrate-binding protein NasS K22067 nasS; two-component system, oxyanion-binding sensor D PAM18_3261 nasT; response regulator NasT K07183 nasT; two-component system, response regulator / RNA-binding antiterminator D PAM18_1602 amiR; aliphatic amidase regulator K07183 nasT; two-component system, response regulator / RNA-binding antiterminator D PAM18_0965 ladS; Lost Adherence Sensor, LadS K20971 ladS; two-component system, sensor histidine kinase LadS D PAM18_4967 retS; RetS (Regulator of Exopolysaccharide and Type III Secretion) K20972 retS; two-component system, sensor histidine kinase RetS D PAM18_1503 putative sensor/response regulator hybrid K20972 retS; two-component system, sensor histidine kinase RetS C 02035 Bacterial motility proteins [BR:paf02035] D PAM18_0178 putative two-component sensor K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D PAM18_3673 putative two-component sensor K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D PAM18_0177 putative purine-binding chemotaxis protein K03408 cheW; purine-binding chemotaxis protein CheW D PAM18_3667 putative purine-binding chemotaxis protein K03408 cheW; purine-binding chemotaxis protein CheW D PAM18_3668 putative CheW domain protein K03408 cheW; purine-binding chemotaxis protein CheW D PAM18_0174 putative chemotaxis protein K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44] D PAM18_0175 putative chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D PAM18_1617 putative chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D PAM18_0173 chemotaxis-specific methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D PAM18_3672 chemotaxis-specific methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D PAM18_0179 putative two-component response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D PAM18_3675 cheY; two-component response regulator CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D PAM18_3674 cheZ; chemotaxis protein CheZ K03414 cheZ; chemotaxis protein CheZ D PAM18_1616 putative chemotaxis protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D PAM18_0176 aer2; aerotaxis transducer Aer2 K03406 mcp; methyl-accepting chemotaxis protein D PAM18_0180 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein D PAM18_2476 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein D PAM18_2042 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein D PAM18_2320 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein D PAM18_2322 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein D PAM18_3109 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein D PAM18_3780 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein D PAM18_2420 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein D PAM18_3400 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein D PAM18_4380 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein D PAM18_4611 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein D PAM18_3439 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein D PAM18_3708 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein D PAM18_4396 pctC; chemotactic transducer PctC K03406 mcp; methyl-accepting chemotaxis protein D PAM18_4398 pctC; chemotactic transducer PctC K03406 mcp; methyl-accepting chemotaxis protein D PAM18_4399 pctC; chemotactic transducer PctC K03406 mcp; methyl-accepting chemotaxis protein D PAM18_4728 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein D PAM18_5026 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein D PAM18_5187 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein D PAM18_3487 aer; aerotaxis receptor Aer K03776 aer; aerotaxis receptor D PAM18_3931 fliH; flagellar assembly protein H K02411 fliH; flagellar assembly protein FliH D PAM18_3930 fliI; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D PAM18_3929 fliJ; flagellar biosynthesis chaperone K02413 fliJ; flagellar protein FliJ D PAM18_3686 fliO; flagellar protein FliO K02418 fliO; flagellar protein FliO/FliZ D PAM18_3685 fliP; flagellar biosynthesis protein FliP K02419 fliP; flagellar biosynthesis protein FliP D PAM18_3684 fliQ; flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D PAM18_3683 fliR; flagellar biosynthesis protein FliR K02421 fliR; flagellar biosynthesis protein FliR D PAM18_3679 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D PAM18_3682 flhB; flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D PAM18_3932 fliG; flagellar motor switch protein G K02410 fliG; flagellar motor switch protein FliG D PAM18_3688 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D PAM18_3687 fliN; flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN D PAM18_3933 fliF; flagellar MS-ring protein K02409 fliF; flagellar M-ring protein FliF D PAM18_3960 flgI; flagellar basal body P-ring protein K02394 flgI; flagellar P-ring protein FlgI D PAM18_1615 flgA; flagellar basal body P-ring biosynthesis protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA D PAM18_3961 flgH; flagellar basal body L-ring protein K02393 flgH; flagellar L-ring protein FlgH D PAM18_3689 fliL; flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D PAM18_5352 flagellar basal body-associated protein FliL-like protein K02415 fliL; flagellar protein FliL D PAM18_3934 fliE; flagellar hook-basal body protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE D PAM18_3690 putative flagellar hook-length control protein FliK K02414 fliK; flagellar hook-length control protein FliK D PAM18_3967 flgB; flagellar basal body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D PAM18_3966 flgC; flagellar basal body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D PAM18_3965 flgD; flagellar basal body rod modification protein K02389 flgD; flagellar basal-body rod modification protein FlgD D PAM18_3963 flgF; flagellar basal body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF D PAM18_3962 flgG; flagellar basal body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D PAM18_3959 flgJ; flagellar rod assembly protein/muramidase FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ D PAM18_3964 flgE; flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE D PAM18_3958 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D PAM18_3957 flgL; flagellar hook-associated protein FlgL K02397 flgL; flagellar hook-associated protein 3 FlgL D PAM18_1613 flgN; putative export chaperone involved in flagellar synthesis K02399 flgN; flagellar biosynthesis protein FlgN D PAM18_1460 putative outer membrane protein precursor K21218 motY; sodium-type flagellar protein MotY D PAM18_3943 fliC; flagellin type B K02406 fliC; flagellin D PAM18_3941 flagellar cap protein FliD K02407 fliD; flagellar hook-associated protein 2 D PAM18_3939 fliS; flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D PAM18_3940 fliS; Flagellin-specific chaperone K02422 fliS; flagellar secretion chaperone FliS D PAM18_3938 hypothetical protein K02423 fliT; flagellar protein FliT D PAM18_3676 fliA; flagellar biosynthesis sigma factor K02405 fliA; RNA polymerase sigma factor FliA D PAM18_3671 motC; flagellar motor protein K02556 motA; chemotaxis protein MotA D PAM18_5065 motA; flagellar motor protein MotA K02556 motA; chemotaxis protein MotA D PAM18_3670 motD; flagellar motor protein MotD K02557 motB; chemotaxis protein MotB D PAM18_5064 motB; flagellar motor protein MotB K02557 motB; chemotaxis protein MotB D PAM18_3937 fleQ; transcriptional regulator FleQ K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D PAM18_3936 fleS; two-component sensor K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3] D PAM18_3935 fleR; two-component response regulator K10943 flrC; two-component system, response regulator FlrC D PAM18_0310 putative binding protein component of ABC transporter K02424 tcyA; L-cystine transport system substrate-binding protein D PAM18_1614 flgM; FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM D PAM18_3942 hypothetical protein K06603 flaG; flagellar protein FlaG D PAM18_3678 flhF; flagellar biosynthesis regulator FlhF K02404 flhF; flagellar biosynthesis protein FlhF D PAM18_3677 fleN; flagellar synthesis regulator FleN K04562 flhG; flagellar biosynthesis protein FlhG D PAM18_0408 pilG; twitching motility protein PilG K02657 pilG; twitching motility two-component system response regulator PilG D PAM18_0409 pilH; twitching motility protein PilH K02658 pilH; twitching motility two-component system response regulator PilH D PAM18_0410 pilI; twitching motility protein PilI K02659 pilI; twitching motility protein PilI D PAM18_0411 pilJ; twitching motility protein PilJ K02660 pilJ; twitching motility protein PilJ D PAM18_0412 pilK; methyltransferase PilK K02661 pilK; type IV pilus assembly protein PilK D PAM18_0413 chpA; putative component of chemotactic signal transduction system K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator) D PAM18_4640 pilR; two-component response regulator PilR K02667 pilR; two-component system, NtrC family, response regulator PilR D PAM18_4639 pilS; two-component sensor PilS K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3] D PAM18_0395 pilT; twitching motility protein PilT K02669 pilT; twitching motility protein PilT D PAM18_0396 pilU; twitching motility protein PilU K02670 pilU; twitching motility protein PilU D PAM18_0414 chpB; putative methylesterase K06597 chpB; chemosensory pili system protein ChpB (putative protein-glutamate methylesterase) D PAM18_0415 chpC; putative chemotaxis protein K06598 chpC; chemosensory pili system protein ChpC D PAM18_0416 chpD; putative transcriptional regulator K06599 chpD; AraC family transcriptional regulator, chemosensory pili system protein ChpD D PAM18_0417 chpE; putative chemotaxis protein K06600 chpE; chemosensory pili system protein ChpE D PAM18_4617 pilA; type 4 fimbrial precursor PilA K02650 pilA; type IV pilus assembly protein PilA D PAM18_4618 pilB; type 4 fimbrial biogenesis protein PilB K02652 pilB; type IV pilus assembly protein PilB D PAM18_4620 pilD; type 4 prepilin peptidase PilD K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D PAM18_1133 pilF; type 4 fimbrial biogenesis protein PilF K02656 pilF; type IV pilus assembly protein PilF D PAM18_5155 pilQ; Type 4 fimbrial biogenesis outer membrane protein PilQ precursor K02666 pilQ; type IV pilus assembly protein PilQ D PAM18_5156 pilP; type 4 fimbrial biogenesis protein PilP K02665 pilP; type IV pilus assembly protein PilP D PAM18_5157 pilO; type 4 fimbrial biogenesis protein PilO K02664 pilO; type IV pilus assembly protein PilO D PAM18_5158 pilN; type 4 fimbrial biogenesis protein PilN K02663 pilN; type IV pilus assembly protein PilN D PAM18_5159 pilM; type 4 fimbrial biogenesis protein PilM K02662 pilM; type IV pilus assembly protein PilM D PAM18_2001 pilZ; type 4 fimbrial biogenesis protein PilZ K02676 pilZ; type IV pilus assembly protein PilZ D PAM18_4644 pilV; type 4 fimbrial biogenesis protein PilV K02671 pilV; type IV pilus assembly protein PilV D PAM18_4645 pilW; type 4 fimbrial biogenesis protein PilW K02672 pilW; type IV pilus assembly protein PilW D PAM18_4646 pilX; type 4 fimbrial biogenesis protein PilX K02673 pilX; type IV pilus assembly protein PilX D PAM18_4647 pilY1; type 4 fimbrial biogenesis protein PilY1 K02674 pilY1; type IV pilus assembly protein PilY1 D PAM18_4648 pilY2; type 4 fimbrial biogenesis protein PilY2 K02675 pilY2; type IV pilus assembly protein PilY2 D PAM18_4649 pilE; type 4 fimbrial biogenesis protein PilE K02655 pilE; type IV pilus assembly protein PilE D PAM18_4395 flp; Type IVb pilin, Flp K02651 flp; pilus assembly protein Flp/PilA D PAM18_4384 fppA; Flp prepilin peptidase A, FppA K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D PAM18_4394 rcpC; RcpC K02279 cpaB; pilus assembly protein CpaB D PAM18_4393 rcpA; RcpA K02280 cpaC; pilus assembly protein CpaC D PAM18_4392 tadZ; TadZ K02282 cpaE; pilus assembly protein CpaE D PAM18_4391 tadA; TadA ATPase K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D PAM18_2913 cupA1; fimbrial subunit CupA1 K07345 fimA; major type 1 subunit fimbrin (pilin) D PAM18_0854 cupB1; putative fimbrial subunit CupB1 K07345 fimA; major type 1 subunit fimbrin (pilin) D PAM18_4056 cupC1; fimbrial subunit CupC1 K07345 fimA; major type 1 subunit fimbrin (pilin) D PAM18_2912 cupA2; chaperone CupA2 K07346 fimC; fimbrial chaperone protein D PAM18_4748 putative pili assembly chaperone K07346 fimC; fimbrial chaperone protein D PAM18_2911 cupA3; usher CupA3 K07347 fimD; outer membrane usher protein D PAM18_4054 cupC3; usher CupC3 K07347 fimD; outer membrane usher protein D PAM18_0856 cupB3; usher CupB3 K07347 fimD; outer membrane usher protein D PAM18_4749 putative type 1 pili usher protein CsuD K07347 fimD; outer membrane usher protein D PAM18_4745 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D PAM18_4746 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D PAM18_4750 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D PAM18_4747 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:paf04812] D PAM18_4572 mreB; rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D PAM18_4498 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D PAM18_4499 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA D PAM18_1728 minC; septum formation inhibitor K03610 minC; septum site-determining protein MinC D PAM18_1727 minD; cell division inhibitor MinD K03609 minD; septum site-determining protein MinD D PAM18_1726 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor D PAM18_3669 putative plasmid partitioning protein K03496 parA; chromosome partitioning protein D PAM18_5143 putative ATPase nvolved in chromosome partitioning K03496 parA; chromosome partitioning protein D PAM18_5691 soj; chromosome partitioning protein Soj K03496 parA; chromosome partitioning protein D PAM18_5690 spoOJ; chromosome partitioning protein Spo0J K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D PAM18_1335 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:paf04147] D PAM18_3976 putative heat shock protein (hsp90 family) K04079 HSP90A; molecular chaperone HtpG D PAM18_3451 htpG; heat shock protein 90 K04079 HSP90A; molecular chaperone HtpG D PAM18_1311 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D PAM18_1959 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D PAM18_1777 gapA; glyceraldehyde 3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D PAM18_0553 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D PAM18_3633 pykF; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D PAM18_4419 pykA; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D PAM18_1744 ppiA; peptidyl-prolyl cis-trans isomerase A K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D PAM18_5515 putative dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D PAM18_4192 putative alkyl hydroperoxide reductase K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24] D PAM18_1457 putative peroxidase K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24] D PAM18_4476 groEL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D PAM18_4869 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D PAM18_4840 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D PAM18_1169 guaB; inosine 5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D PAM18_0653 tufA; elongation factor Tu K02358 tuf; elongation factor Tu D PAM18_0665 tufA; elongation factor Tu K02358 tuf; elongation factor Tu D PAM18_0637 putative HIT family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D PAM18_1673 putative HIT family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D PAM18_3597 putative HIT family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D PAM18_3018 putative transporter, bile acid/Na+ symporter family K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7 D PAM18_1668 fadD2; acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D PAM18_1669 fadD1; acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D PAM18_3430 putative AMP-binding enzyme K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D PAM18_3044 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_3310 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_1015 putative acyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_2485 putative acyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_4894 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAM18_0432 sahH; S-adenosyl-L-homocysteine hydrolase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D PAM18_1260 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D PAM18_3506 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D PAM18_5383 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D PAM18_1461 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D PAM18_0400 putative cystathionine gamma-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1] D PAM18_3838 putative dimethylarginine dimethylaminohydrolase K01482 DDAH; dimethylargininase [EC:3.5.3.18] D PAM18_0441 dht; phenylhydantoinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D PAM18_3037 fahA; fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2] D PAM18_5224 fbp; fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D PAM18_2885 glgB; glycogen branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D PAM18_3644 putative carbohydrate kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D PAM18_1403 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D PAM18_1406 putative carbohydrate kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D PAM18_0291 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAM18_0293 spuB; putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAM18_1609 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAM18_3004 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAM18_3482 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAM18_5233 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAM18_5629 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAM18_5644 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAM18_5362 hemB; delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D PAM18_4174 hpd; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D PAM18_4168 phhB; pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D PAM18_1672 phoA; alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D PAM18_0312 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D PAM18_4965 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D PAM18_3460 lpdG; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PAM18_2790 lpdV; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PAM18_4940 lpd3; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PAM18_2010 etfA; electron transfer flavoprotein alpha-subunit K03522 fixB; electron transfer flavoprotein alpha subunit D PAM18_1789 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D PAM18_5560 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D PAM18_4856 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D PAM18_5221 blc; outer membrane lipoprotein Blc K03098 APOD; apolipoprotein D and lipocalin family protein C 02048 Prokaryotic defense system [BR:paf02048] D PAM18_2618 cas1; CRISPR-associated protein K15342 cas1; CRISP-associated protein Cas1 D PAM18_2617 helicase K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4] D PAM18_2616 hypothetical protein K19127 csy1; CRISPR-associated protein Csy1 D PAM18_2615 hypothetical protein K19128 csy2; CRISPR-associated protein Csy2 D PAM18_2614 hypothetical protein K19129 csy3; CRISPR-associated protein Csy3 D PAM18_2613 hypothetical protein K19130 csy4; CRISPR-associated endonuclease Csy4 [EC:3.1.-.-] D PAM18_2237 hsdR; type I restriction modification enzyme restriction subunit K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] D PAM18_2239 hsdS; type I restriction modification enzyme specificity subunit K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] D PAM18_2238 hsdM; type I restriction modification enzyme methylase subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] D PAM18_0705 Type III restriction enzyme, Res subunit K01156 res; type III restriction enzyme [EC:3.1.21.5] D PAM18_0704 Type III restriction enzyme, Mod subunit K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72] D PAM18_1345 hypothetical protein K07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-] D PAM18_1342 hypothetical protein K07339 hicA; mRNA interferase HicA [EC:3.1.-.-] D PAM18_2445 hypothetical protein K18843 hicB; antitoxin HicB D PAM18_4498 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D PAM18_4572 mreB; rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D PAM18_5075 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D PAM18_5078 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D PAM18_1829 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D PAM18_4278 hypothetical protein K19168 cptA; toxin CptA D PAM18_4279 hypothetical protein K09159 cptB; antitoxin CptB D PAM18_1124 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D PAM18_2982 putative pyridoxal-phosphate dependent enzyme K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels [BR:paf04040] C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules [BR:paf04090] C 01504 Antimicrobial resistance genes [BR:paf01504] D PAM18_5635 putative beta-lactamase K18973 blaOXA-50; beta-lactamase class D OXA-50 [EC:3.5.2.6] D PAM18_0829 ampC; beta-lactamase K20320 blaPDC; beta-lactamase class C PDC [EC:3.5.2.6] D PAM18_3184 str; streptomycin 3''-phosphotransferase K04343 strB; streptomycin 6-kinase [EC:2.7.1.72] D PAM18_3901 putative major facilitator superfamily (MFS) transporter K08151 tetA; MFS transporter, DHA1 family, tetracycline resistance protein D PAM18_0467 putative streptogramin lyase K18235 vgb; virginiamycin B lyase [EC:4.2.99.-] D PAM18_0325 hypothetical protein K18234 vat; virginiamycin A acetyltransferase [EC:2.3.1.-] D PAM18_1629 putative major facilitator superfamily (MFS) transporter K18553 cmlR; MFS transporter, DHA1 family, chloramphenicol resistance protein D PAM18_4330 cat; chloramphenicol acetyltransferase K00638 catB; chloramphenicol O-acetyltransferase type B [EC:2.3.1.28] D PAM18_1085 putative transferase K00638 catB; chloramphenicol O-acetyltransferase type B [EC:2.3.1.28] D PAM18_4332 acetyltransferase K00638 catB; chloramphenicol O-acetyltransferase type B [EC:2.3.1.28] D PAM18_3747 putative major facilitator superfamily (MFS) transporter K08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein D PAM18_3903 putative fosfomycin resistance protein K21253 fosA; glutathione S-transferase fosA [EC:2.5.1.18] D PAM18_3246 putative two-component sensor K18072 parS; two-component system, OmpR family, sensor kinase ParS [EC:2.7.13.3] D PAM18_3245 putative two-component response regulator K18073 parR; two-component system, OmpR family, response regulator ParR D PAM18_3693 putative two-component sensor K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D PAM18_2153 copS; two-component sensor, CopS K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D PAM18_2515 putative two-component sensor K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D PAM18_4998 putative two-component sensor K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D PAM18_3694 putative two-component response regulator K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D PAM18_2516 putative two-component response regulator K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D PAM18_4997 irlR; two-component response regulator K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D PAM18_2154 copR; two-component response regulator, CopR K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D PAM18_2547 mexT; transcriptional regulator MexT K18297 mexT; LysR family transcriptional regulator, mexEF-oprN operon transcriptional activator D PAM18_4079 oprD; Basic amino acid, basic peptide and imipenem outer membrane porin OprD precursor K18093 oprD; imipenem/basic amino acid-specific outer membrane pore [EC:3.4.21.-] D PAM18_0189 putative porin K18093 oprD; imipenem/basic amino acid-specific outer membrane pore [EC:3.4.21.-] D PAM18_2272 opdB; proline porin OpdB K18093 oprD; imipenem/basic amino acid-specific outer membrane pore [EC:3.4.21.-] D PAM18_4290 hypothetical protein K18346 vanW; vancomycin resistance protein VanW D PAM18_1157 hypothetical protein K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D PAM18_4119 hypothetical protein K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3] D PAM18_3853 phoQ; two-component sensor PhoQ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D PAM18_3854 phoP; two-component response regulator PhoP K07660 phoP; two-component system, OmpR family, response regulator PhoP D PAM18_0424 mexR; multidrug resistance operon repressor MexR K18131 mexR; MarR family transcriptional regulator, repressor of the mexAB-oprM multidrug resistance operon D PAM18_0425 mexA; Resistance-Nodulation-Cell Division (RND) multidrug efflux membrane fusion protein MexA precursor K03585 acrA; membrane fusion protein, multidrug efflux system D PAM18_4465 putative Resistance-Nodulation-Cell Division (RND) efflux membrane fusion protein precursor K03585 acrA; membrane fusion protein, multidrug efflux system D PAM18_0426 mexB; Resistance-Nodulation-Cell Division (RND) multidrug efflux transporter MexB K18138 acrB; multidrug efflux pump D PAM18_4466 multidrug efflux protein K18138 acrB; multidrug efflux pump D PAM18_0427 oprM; Major intrinsic multiple antibiotic resistance efflux outer membrane protein OprM precursor K18139 oprM; outer membrane protein, multidrug efflux system D PAM18_4694 nfxB; transcriptional regulator NfxB K18294 nfxB; TetR/AcrR family transcriptional regulator, mexCD-oprJ operon repressor D PAM18_4693 mexC; Resistance-Nodulation-Cell Division (RND) multidrug efflux membrane fusion protein MexC precursor K18295 mexC; membrane fusion protein, multidrug efflux system D PAM18_4692 mexD; Resistance-Nodulation-Cell Division (RND) multidrug efflux transporter MexD K18296 mexD; multidrug efflux pump D PAM18_2546 mexE; Resistance-Nodulation-Cell Division (RND) multidrug efflux membrane fusion protein MexE precursor K18298 mexE; membrane fusion protein, multidrug efflux system D PAM18_2545 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18299 mexF; multidrug efflux pump D PAM18_2544 oprN; Multidrug efflux outer membrane protein OprN precursor K18300 oprN; outer membrane protein, multidrug efflux system D PAM18_1268 putative transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor D PAM18_1269 putative Resistance-Nodulation-Cell Division (RND) efflux membrane fusion protein precursor K18302 mexJ; membrane fusion protein, multidrug efflux system D PAM18_1270 putative Resistance-Nodulation-Cell Division (RND) efflux transporter K18303 mexK; multidrug efflux pump D PAM18_3024 putative transcriptional regulator K18129 mexZ; TetR/AcrR family transcriptional regulator, mexXY operon repressor D PAM18_3025 periplasmic multidrug efflux lipoprotein precursor K18094 mexX; membrane fusion protein, multidrug efflux system D PAM18_3026 multidrug efflux protein K18095 mexY; multidrug efflux pump D PAM18_3701 lasR; transcriptional regulator LasR K18304 lasR; LuxR family transcriptional regulator, quorum-sensing system regulator LasR D PAM18_4886 putative transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D PAM18_1463 putative Resistance-Nodulation-Cell Division (RND) efflux membrane fusion protein precursor K19595 gesA; membrane fusion protein, gold/copper resistance efflux system D PAM18_1464 putative Resistance-Nodulation-Cell Division (RND) efflux transporter K19594 gesB; gold/copper resistance efflux pump D PAM18_1465 putative outer membrane protein precursor K19593 opmE; outer membrane protein, multidrug efflux system D PAM18_0793 putative outer membrane protein precursor K12340 tolC; outer membrane protein D PAM18_5085 putative outer membrane protein precursor K12340 tolC; outer membrane protein D PAM18_4685 putative outer membrane protein precursor K12340 tolC; outer membrane protein D PAM18_1915 putative two-component response regulator K07690 evgA; two-component system, NarL family, response regulator EvgA D PAM18_0035 putative two-component response regulator K07690 evgA; two-component system, NarL family, response regulator EvgA D PAM18_0992 rocA1; two-component response regulator RocA1 K07690 evgA; two-component system, NarL family, response regulator EvgA D PAM18_2988 putative transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins [BR:paf00536] D PAM18_0042 putative hemagglutinin K15125 fhaB; filamentous hemagglutinin C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:paf00537] D PAM18_1672 phoA; alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D PAM18_2626 treA; trehalase K01194 TREH; alpha,alpha-trehalase [EC:3.2.1.28] D PAM18_5515 putative dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:paf03100] D PAM18_R019 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D PAM18_R021 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D PAM18_R006 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D PAM18_R078 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D PAM18_R053 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D PAM18_R041 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D PAM18_R046 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D PAM18_R047 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D PAM18_R061 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D PAM18_R001 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D PAM18_R015 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D PAM18_R018 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D PAM18_R060 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D PAM18_R017 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D PAM18_R025 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D PAM18_R024 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D PAM18_R037 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D PAM18_R035 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D PAM18_R062 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D PAM18_R020 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D PAM18_R028 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D PAM18_R022 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D PAM18_R029 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D PAM18_R030 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D PAM18_R034 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D PAM18_R010 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D PAM18_R050 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D PAM18_R038 tRNA-His K14226 tRNA-His; tRNA His D PAM18_R040 tRNA-His K14226 tRNA-His; tRNA His D PAM18_R005 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D PAM18_R079 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D PAM18_R054 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D PAM18_R036 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D PAM18_R039 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D PAM18_R070 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D PAM18_R013 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D PAM18_R072 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D PAM18_R073 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D PAM18_R058 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D PAM18_R003 tRNA-Met K14230 tRNA-Met; tRNA Met D PAM18_R069 tRNA-Met K14230 tRNA-Met; tRNA Met D PAM18_R045 tRNA-Met K14230 tRNA-Met; tRNA Met D PAM18_R063 tRNA-Met K14230 tRNA-Met; tRNA Met D PAM18_R074 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D PAM18_R059 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D PAM18_R032 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D PAM18_R026 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D PAM18_R027 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D PAM18_R043 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D PAM18_R048 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D PAM18_R033 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D PAM18_R075 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D PAM18_R011 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D PAM18_R057 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D PAM18_R012 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D PAM18_R009 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D PAM18_R031 tRNA-Val K14237 tRNA-Val; tRNA Val D PAM18_R016 tRNA-Val K14237 tRNA-Val; tRNA Val D PAM18_R023 tRNA-Val K14237 tRNA-Val; tRNA Val D PAM18_R071 tRNA-Sec K14238 tRNA-Sec; tRNA Sec D PAM18_R004 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D PAM18_R055 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D PAM18_R066 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D PAM18_R080 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D PAM18_R007 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D PAM18_R052 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D PAM18_R077 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D PAM18_R065 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D PAM18_R008 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D PAM18_R051 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D PAM18_R076 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D PAM18_R064 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D PAM18_R042 ffs; 4.5S ribosomal RNA K01983 ffs; SRP RNA D PAM18_R049 ssrA; ssrA K15035 ssrA; transfer-messenger RNA D PAM18_R002 rsmY; rsmY K20969 rsmY; small regulatory RNA RsmY D PAM18_R014 rsmZ; rsmZ K20970 rsmZ; small regulatory RNA RsmZ # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D PAM18_5506 3-hydroxybutyryl-CoA dehydrogenase K17735 lcdH; carnitine 3-dehydrogenase [EC:1.1.1.108] D PAM18_0770 dkgB; 2,5-diketo-D-gluconate reductase B K06222 dkgB; 2,5-diketo-D-gluconate reductase B [EC:1.1.1.346] D PAM18_4296 putative 3-hydroxyisobutyrate dehydrogenase K19711 E1.1.1.387; L-serine 3-dehydrogenase (NAD+) [EC:1.1.1.387] D PAM18_0787 putative dehydrogenase E1 component K21416 acoA; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha [EC:1.1.1.-] D PAM18_0786 acoB; acetoin catabolism protein AcoB K21417 acoB; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta [EC:1.1.1.-] D PAM18_3922 putative dehydrogenase K21430 yliI; aldose sugar dehydrogenase [EC:1.1.5.-] D PAM18_3307 putative oxidoreductase K23107 yajO; 1-deoxyxylulose-5-phosphate synthase [EC:1.1.-.-] D PAM18_0364 putative aldehyde dehydrogenase K00154 E1.2.1.68; coniferyl-aldehyde dehydrogenase [EC:1.2.1.68] D PAM18_1871 fadH1; 2,4-dienoyl-CoA reductase FadH1 K00219 fadH; 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34] D PAM18_4924 fadH2; 2,4-dienoyl-CoA reductase FadH2 K00219 fadH; 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34] D PAM18_2838 putative NADP-dependent oxidoreductase K23256 curA; NADPH-dependent curcumin reductase [EC:1.3.1.-] D PAM18_3058 pqqC; pyrroloquinoline quinone biosynthesis protein PqqC K06137 pqqC; pyrroloquinoline-quinone synthase [EC:1.3.3.11] D PAM18_2662 putative oxidoreductase K07302 iorA; isoquinoline 1-oxidoreductase subunit alpha [EC:1.3.99.16] D PAM18_3160 putative oxidoreductase K07302 iorA; isoquinoline 1-oxidoreductase subunit alpha [EC:1.3.99.16] D PAM18_2663 putative aldehyde dehydrogenase K07303 iorB; isoquinoline 1-oxidoreductase subunit beta [EC:1.3.99.16] D PAM18_3161 putative oxidoreductase K07303 iorB; isoquinoline 1-oxidoreductase subunit beta [EC:1.3.99.16] D PAM18_2008 electron transfer flavoprotein-ubiquinone oxidoreductase K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1] D PAM18_4754 putative oxidoreductase K18208 RNLS; renalase [EC:1.6.3.5] D PAM18_0023 qor; quinone oxidoreductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D PAM18_2293 putative quinone oxidoreductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D PAM18_5353 putative oxidoreductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D PAM18_4177 putative oxidoreductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D PAM18_4022 2-Nitropropane Dioxygenase K23948 E1.6.5.9; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D PAM18_2413 putative NADPH specific quinone oxidoreductase K03923 mdaB; NADPH dehydrogenase (quinone) [EC:1.6.5.10] D PAM18_4253 putative acyl carrier protein phosphodiesterase K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17] D PAM18_3083 azoreductase K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17] D PAM18_1748 acpD; acyl carrier protein phosphodiesterase K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17] D PAM18_0141 ahpF; alkyl hydroperoxide reductase subunit F K03387 ahpF; NADH-dependent peroxiredoxin subunit F [EC:1.8.1.-] D PAM18_2558 hypothetical protein K19713 tsdA; thiosulfate dehydrogenase [EC:1.8.2.2] D PAM18_4664 putative cytochrome c K19713 tsdA; thiosulfate dehydrogenase [EC:1.8.2.2] D PAM18_5133 msrA; peptide methionine sulfoxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D PAM18_2136 methionine sulfoxide reductase B K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] D PAM18_3424 putative glutathione S-transferase K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-] D PAM18_4012 putative glutathione S-transferase K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-] D PAM18_3848 putative glutathione S-transferase K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-] D PAM18_2365 putative glutathione S-transferase K07393 ECM4; glutathionyl-hydroquinone reductase [EC:1.8.5.7] D PAM18_4799 putative sulfite oxidase subunit YedY K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-] D PAM18_4121 cytochrome b561 K12262 cybB; superoxide oxidase [EC:1.10.3.17] D PAM18_4680 ccpR; cytochrome c551 peroxidase precursor K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5] D PAM18_2851 katN; non-heme catalase KatN K07217 ydbD; manganese catalase [EC:1.11.1.6] D PAM18_2255 cpo; chloroperoxidase precursor K00433 cpo; non-heme chloroperoxidase [EC:1.11.1.10] D PAM18_4040 bcp; bacterioferritin comigratory protein K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D PAM18_2506 tpx; thiol peroxidase K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D PAM18_1515 putative antioxidant protein K24158 prx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D PAM18_0140 ahpC; alkyl hydroperoxide reductase subunit C K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26] D PAM18_0060 osmC; osmotically inducible protein OsmC K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28] D PAM18_2113 ohr; organic hydroperoxide resistance protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28] D PAM18_2199 putative peroxidase K07223 yfeX; porphyrinogen peroxidase [EC:1.11.1.-] D PAM18_1731 hypothetical protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D PAM18_3823 putative pirin protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D PAM18_2624 putative pirin-related protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D PAM18_3828 putative pirin protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D PAM18_2373 putative enzyme K24700 mdo; 3-mercaptopropionate dioxygenase [EC:1.13.11.91] D PAM18_0193 putative alkylsulfatase K22303 atsK; alkyl sulfatase [EC:1.14.11.77] D PAM18_4606 putative hydroxylase K07336 K07336; PKHD-type hydroxylase [EC:1.14.11.-] D PAM18_2309 fhp; nitric oxide dioxygenase K05916 hmp; nitric oxide dioxygenase [EC:1.14.12.17] D PAM18_2655 pvdA; L-ornithine N5-oxygenase K10531 pvdA; L-ornithine N5-monooxygenase [EC:1.14.13.195 1.14.13.196] D PAM18_2693 putative monooxygenase, DszA family K20938 ladA; long-chain alkane monooxygenase [EC:1.14.14.28] D PAM18_2715 putative xenobiotic compound monooxygenase, DszA family K20938 ladA; long-chain alkane monooxygenase [EC:1.14.14.28] D PAM18_2386 pltA; putative halogenase K22712 pltA; 1H-pyrrole-2-carbonyl-[peptidyl-carrier protein] chlorinase [EC:1.14.19.56] D PAM18_1570 fpr; ferredoxin--NADP+ reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D PAM18_4709 putative oxidoreductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D PAM18_4088 putative arsenate reductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1] D PAM18_2761 arsC; ArsC protein K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4] D PAM18_3056 pqqE; pyrroloquinoline quinone biosynthesis protein PqqE K06139 pqqE; PqqA peptide cyclase [EC:1.21.98.4] D PAM18_2246 putative radical activating enzyme K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4] D PAM18_3122 putative radical-activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D PAM18_1322 pcm; protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D PAM18_5668 putative cyclopropan-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] D PAM18_2473 hypothetical protein K00598 tam; trans-aconitate 2-methyltransferase [EC:2.1.1.144] D PAM18_2975 putative carbamoyl transferase K00612 nodU; carbamoyltransferase [EC:2.1.3.-] D PAM18_5119 putative carbamoyl transferase K00612 nodU; carbamoyltransferase [EC:2.1.3.-] D PAM18_0209 putative acyl transferase K13935 mdcH; malonate decarboxylase epsilon subunit [EC:2.3.1.39] D PAM18_4938 arylamine N-acetyltransferase K00675 nhoA; N-hydroxyarylamine O-acetyltransferase [EC:2.3.1.118] D PAM18_1682 3-oxoacyl-(acyl carrier protein) synthase III K16872 E2.3.1.207; beta-ketodecanoyl-[acyl-carrier-protein] synthase [EC:2.3.1.207] D PAM18_0955 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269] D PAM18_4441 putative acyltransferase K22617 olsA; lyso-ornithine lipid O-acyltransferase [EC:2.3.1.270] D PAM18_4325 hypothetical protein K03824 yhbS; putative acetyltransferase [EC:2.3.1.-] D PAM18_3703 putative acetyltransferase K03827 yjaB; putative acetyltransferase [EC:2.3.1.-] D PAM18_0245 putative acetyltransferase K03827 yjaB; putative acetyltransferase [EC:2.3.1.-] D PAM18_4978 putative phosphinothricin N-acetyltransferase K24217 mnaT; L-amino acid N-acyltransferase [EC:2.3.1.-] D PAM18_2358 aat; leucyl/phenylalanyl-tRNA--protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6] D PAM18_2090 transglutaminase-like domain protein K22452 tgpA; protein-glutamine gamma-glutamyltransferase [EC:2.3.2.13] D PAM18_2357 arginyl-tRNA-protein transferase K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29] D PAM18_0204 triphosphoribosyl-dephospho-CoA synthase K13930 mdcB; triphosphoribosyl-dephospho-CoA synthase [EC:2.4.2.52] D PAM18_1379 hypothetical protein K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25] D PAM18_3707 hypothetical protein K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25] D PAM18_0339 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D PAM18_1967 putative thiamine biosynthesis lipoprotein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D PAM18_3277 hypothetical protein K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33] D PAM18_1510 hypothetical protein K23753 ppk2; AMP-polyphosphate phosphotransferase [EC:2.7.4.33] D PAM18_5128 glnE; glutamate-ammonia-ligase adenylyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89] D PAM18_0208 phosphoribosyl-dephospho-CoA transferase K13934 mdcG; phosphoribosyl-dephospho-CoA transferase [EC:2.7.7.66] D PAM18_5138 hypothetical protein K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108] D PAM18_3529 aceK; bifunctional isocitrate dehydrogenase kinase/phosphatase protein K00906 aceK; isocitrate dehydrogenase kinase/phosphatase [EC:2.7.11.5 3.1.3.-] D PAM18_1213 putative carnitine dehydratase K18313 sct; succinyl-CoA---D-citramalate CoA-transferase [EC:2.8.3.20] D PAM18_5172 phaD; poly(3-hydroxyalkanoic acid) depolymerase K22250 phaZ; poly(3-hydroxyoctanoate) depolymerase [EC:3.1.1.76] D PAM18_1253 putative phophatase K23518 MACROD; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106] D PAM18_2283 putative hydrolase K23722 pfeE; iron(III)-enterobactin esterase [EC:3.1.1.108] D PAM18_5505 putative thioesterase K27492 cdhB; betainyl-CoA thioesterase [EC:3.1.2.33] D PAM18_1833 putative thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D PAM18_2162 putative thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D PAM18_5304 putative thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D PAM18_5449 putative thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D PAM18_2392 pltG; putative thioesterase K22713 pltG; thioesterase [EC:3.1.2.-] D PAM18_1771 putative PHP domain protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97] D PAM18_3431 putative phosphohistidine phosphatase SixA K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-] D PAM18_1113 hypothetical protein K26148 K26148; c-di-GMP phosphodiesterase [EC:3.1.4.52] D PAM18_2145 arr; aminoglycoside response regulator K26148 K26148; c-di-GMP phosphodiesterase [EC:3.1.4.52] D PAM18_4890 putative two-component response regulator K07814 K07814; cyclic di-GMP phosphodiesterase [EC:3.1.4.-] D PAM18_0831 putative HDIG domain protein K25135 K25135; cyclic di-GMP phosphodiesterase [EC:3.1.4.-] D PAM18_0031 betC; choline sulfatase K01133 betC; choline-sulfatase [EC:3.1.6.6] D PAM18_4299 sdsA1; SDS hydrolase SdsA1 K25227 sdsA1; linear primary-alkylsulfatase [EC:3.1.6.21] D PAM18_2221 endA; DNA-specific endonuclease I K01150 endA; deoxyribonuclease I [EC:3.1.21.1] D PAM18_2097 mttC; secretion protein MttC K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D PAM18_2002 putative deoxyribonuclease, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D PAM18_1422 putative deoxyribonuclease, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D PAM18_4230 ampDh3; AmpDh3 K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D PAM18_3910 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D PAM18_0019 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D PAM18_2656 pvdQ; PvdQ K07116 pvdQ; acyl-homoserine-lactone acylase [EC:3.5.1.97] D PAM18_4013 quiP; QuiP K07116 pvdQ; acyl-homoserine-lactone acylase [EC:3.5.1.97] D PAM18_1387 putative carbon-nitrogen hydrolase family protein K18540 ramA; (R)-amidase [EC:3.5.1.100] D PAM18_4566 putative carbon-nitrogen hydrolase K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128] D PAM18_0283 gpuA; 3-guanidinopropionase K18459 gpuA; guanidinopropionase [EC:3.5.3.17] D PAM18_0143 hydroxydechloroatrazine ethylaminohydrolase K18456 E3.5.4.32; 8-oxoguanine deaminase [EC:3.5.4.32] D PAM18_1989 Maf-like protein K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-] D PAM18_1893 putative MoxR-like ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D PAM18_2088 putative MoxR protein K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D PAM18_4412 putative methanol dehydrogenase regulatory protein K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D PAM18_0202 putative esterase K07002 RBBP9; serine hydrolase [EC:3.-.-.-] D PAM18_0206 mdcD; malonate decarboxylase subunit beta K13932 mdcD; malonate decarboxylase beta subunit [EC:4.1.1.87] D PAM18_0207 mdcE; malonate decarboxylase gamma subunit K13933 mdcE; malonate decarboxylase gamma subunit [EC:4.1.1.87] D PAM18_0899 putative racemase K22209 tarD; D(-)-tartrate dehydratase [EC:4.2.1.81] D PAM18_5060 putative carbohydrate kinase K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6] D PAM18_2290 serine/threonine dehydratase K22589 thadh; threo-3-hydroxy-L-aspartate ammonia-lyase [EC:4.3.1.16] D PAM18_1279 putative pyridoxal-phosphate dependent enzyme K01766 csdA; cysteine sulfinate desulfinase [EC:4.4.1.-] D PAM18_1229 putative peptidyl-prolyl cis-trans isomerase, FkbP-type K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8] D PAM18_4339 putative peptidyl-prolyl cis-trans isomerase, PpiC-type K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8] D PAM18_0551 putative hydroxypyruvate isomerase K22131 otnI; 2-dehydrotetronate isomerase [EC:5.3.1.35] D PAM18_0920 mpl; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45] D PAM18_4678 rtcA; RNA 3'-terminal-phosphate cyclase K01974 RTCA; RNA 3'-terminal phosphate cyclase (ATP) [EC:6.5.1.4] D PAM18_1476 putative NADH:ubiquinone oxidoreductase, subunit RnfD K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2] D PAM18_1477 electron transport complex protein RnfC K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2] D PAM18_1478 electron transport complex protein RnfB K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2] D PAM18_1961 nqrA; Na(+)-translocating NADH-quinone reductase subunit A K00346 nqrA; Na+-transporting NADH:ubiquinone oxidoreductase subunit A [EC:7.2.1.1] D PAM18_1962 nqrB; Na(+)-translocating NADH-quinone reductase subunit B K00347 nqrB; Na+-transporting NADH:ubiquinone oxidoreductase subunit B [EC:7.2.1.1] D PAM18_1963 nqrC; Na(+)-translocating NADH-quinone reductase subunit C K00348 nqrC; Na+-transporting NADH:ubiquinone oxidoreductase subunit C [EC:7.2.1.1] D PAM18_1964 nqrD; Na(+)-translocating NADH-quinone reductase subunit D K00349 nqrD; Na+-transporting NADH:ubiquinone oxidoreductase subunit D [EC:7.2.1.1] D PAM18_1965 nqrE; Na(+)-translocating NADH-quinone reductase subunit E K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1] D PAM18_1966 nqrF; Na(+)-translocating NADH-quinone reductase subunit F K00351 nqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:7.2.1.1] D PAM18_3500 putative cation-transporting P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9] D PAM18_1256 putative metal-transporting P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21] D PAM18_4936 mgtA; Mg(2+) transport ATPase, P-type 2 K01531 mgtA; P-type Mg2+ transporter [EC:7.2.2.14] C 99981 Carbohydrate metabolism D PAM18_4828 sugar fermentation stimulation protein A K06206 sfsA; sugar fermentation stimulation protein A C 99982 Energy metabolism D PAM18_5298 putative formate dehydrogenase accessory protein FdhD K02379 fdhD; FdhD protein D PAM18_1129 fdx2; ferredoxin K04755 fdx; ferredoxin, 2Fe-2S D PAM18_1325 fdxA; ferredoxin I K05524 fdxA; ferredoxin D PAM18_2257 putative ferredoxin K05524 fdxA; ferredoxin D PAM18_1475 putative NADH:ubiquinone oxidoreductase, subunit RnfG K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G D PAM18_1474 electron transport complex RsxE subunit K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E D PAM18_1479 putative NADH:ubiquinone oxidoreductase, subunit RnfA K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A D PAM18_1531 flavodoxin K06205 mioC; MioC protein D PAM18_1125 iscU; scaffold protein K04488 iscU; nitrogen fixation protein NifU and related proteins D PAM18_0524 putative dinitrification protein NorD K02448 norD; nitric oxide reductase NorD protein D PAM18_0520 putative cytochrome c oxidase subunit K02164 norE; nitric oxide reductase NorE protein D PAM18_0519 nirQ; regulatory protein NirQ K04748 norQ; nitric oxide reductase NorQ protein D PAM18_3858 napD; NapD protein of periplasmic nitrate reductase K02570 napD; periplasmic nitrate reductase NapD D PAM18_3857 napF; ferredoxin protein NapF K02572 napF; ferredoxin-type protein NapF D PAM18_3856 napE; periplasmic nitrate reductase protein NapE K02571 napE; periplasmic nitrate reductase NapE D PAM18_3861 napC; cytochrome c-type protein NapC K02569 napC; cytochrome c-type protein NapC D PAM18_2009 etfB; electron transfer flavoprotein beta-subunit K03521 fixA; electron transfer flavoprotein beta subunit D PAM18_0516 nirC; putative c-type cytochrome precursor K19344 nirC; cytochrome c55X D PAM18_0515 nirF; heme d1 biosynthesis protein NirF K19345 nirF; protein NirF D PAM18_0039 hypothetical protein K09165 K09165; dodecin C 99983 Lipid metabolism D PAM18_0967 putative acyl-CoA dehydrogenase K09456 aidB; putative acyl-CoA dehydrogenase D PAM18_5413 pchP; phosphorylcholine phosphatase K21830 pchP; phosphorylcholine phosphatase C 99984 Nucleotide metabolism C 99985 Amino acid metabolism D PAM18_4194 putative sulfate transport protein CysZ K06203 cysZ; CysZ protein D PAM18_3640 putative transporter K04023 eutH; ethanolamine transporter D PAM18_2492 putative ring-cleaving dioxygenase K08234 yaeR; glyoxylase I family protein D PAM18_0394 putative PLP dependent enzyme K06997 yggS; PLP dependent protein D PAM18_0133 hypothetical protein K21700 bauB; beta-alanine degradation protein BauB D PAM18_1699 putative acetyltransferase K22479 argA; N-acetyltransferase C 99986 Glycan metabolism D PAM18_1443 algK; alginate biosynthetic protein AlgK precursor K19292 algK; alginate biosynthesis protein AlgK D PAM18_2884 hypothetical protein K07027 K07027; glycosyltransferase 2 family protein D PAM18_4402 hypothetical protein K07027 K07027; glycosyltransferase 2 family protein C 99987 Cofactor metabolism D PAM18_2017 putative cobalamin biosynthesis protein cobW K02234 cobW; cobalamin biosynthesis protein CobW D PAM18_5377 putative enzyme of heme biosynthesis K02498 hemY; HemY protein D PAM18_0510 nirJ; heme d1 biosynthesis protein NirJ K24868 nirJ; heme d1 biosynthesis protein D PAM18_5180 ubiB; ubiquinone biosynthetic protein UbiB K03688 ubiB; ubiquinone biosynthesis protein D PAM18_5179 hypothetical protein K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ D PAM18_5410 hypothetical protein K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK D PAM18_1029 Putative lipid carrier protein K24843 ubiT; O2-independent ubiquinone biosynthesis accessory factor UbiT D PAM18_2021 putative magnesium chelatase K13580 K13580; magnesium chelatase subunit ChlD-like protein C 99988 Secondary metabolism D PAM18_0544 putative depolymerase K03932 lpqC; polyhydroxybutyrate depolymerase D PAM18_0747 pqsL; putative monooxygenase K18004 pqsL; HQNO biosynthesis monooxygenase PqsL D PAM18_3829 putative oxidoreductase K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone) D PAM18_2387 pltB; Polyketide synthase module-like protein K22714 pltB_C; polyketide synthase D PAM18_2388 pltC; polyketide synthase type I K22714 pltB_C; polyketide synthase C 99999 Others D PAM18_5032 putative phospholipase K21831 choE; cholinesterase D PAM18_2099 hypothetical protein K15977 K15977; putative oxidoreductase D PAM18_0835 hypothetical protein K15977 K15977; putative oxidoreductase D PAM18_1079 carboxylesterase K06999 K06999; phospholipase/carboxylesterase B B 09192 Unclassified: genetic information processing C 99973 Transcription D PAM18_4076 putative cold-shock protein K03704 cspA; cold shock protein D PAM18_1703 capB; cold acclimation protein B K03704 cspA; cold shock protein D PAM18_0454 putative cold-shock protein K03704 cspA; cold shock protein D PAM18_2465 capB; cold acclimation protein B K03704 cspA; cold shock protein D PAM18_3874 putative cold-shock protein K03704 cspA; cold shock protein D PAM18_2353 cspD; cold-shock protein CspD K03704 cspA; cold shock protein D PAM18_5375 algQ; anti-RNA polymerase sigma 70 factor K07740 rsd; regulator of sigma D D PAM18_5409 glnK; nitrogen regulatory protein P-II 2 K04752 glnK; nitrogen regulatory protein P-II 2 D PAM18_5320 putative transcriptional accessory protein K06959 tex; protein Tex C 99974 Translation D PAM18_5350 putative ATP-binding/permease fusion ABC transporter K13926 rbbA; ribosome-dependent ATPase D PAM18_1371 putative metallo-beta-lactamase superfamily protein K07576 K07576; metallo-beta-lactamase family protein C 99975 Protein processing D PAM18_4114 hypothetical protein K03668 hslJ; heat shock protein HslJ D PAM18_2354 hypothetical protein K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS D PAM18_3244 tig; trigger factor K03545 tig; trigger factor D PAM18_4798 putative sulfite oxidase subunit YedZ K17247 msrQ; methionine sulfoxide reductase heme-binding subunit D PAM18_4918 fdhE; FdhE protein K02380 fdhE; FdhE protein D PAM18_5003 ureE; urease accessory protein UreE K03187 ureE; urease accessory protein D PAM18_5004 ureF; urease accessory protein UreF K03188 ureF; urease accessory protein D PAM18_5005 ureG; urease accessory protein UreG K03189 ureG; urease accessory protein D PAM18_4976 ureD; urease accessory protein K03190 ureD; urease accessory protein D PAM18_4876 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein D PAM18_5411 putative magnesium chelatase K07391 comM; magnesium chelatase family protein D PAM18_0306 putative proline hydroxylase K07394 K07394; SM-20-related protein D PAM18_3313 putative proteasome-type protease K07395 K07395; putative proteasome-type protease D PAM18_4181 hypothetical protein K07396 K07396; putative protein-disulfide isomerase D PAM18_0059 putative protein-disulfide isomerase K07396 K07396; putative protein-disulfide isomerase D PAM18_3830 putative redox protein K07397 yhfA; putative redox protein D PAM18_0634 putative redox protein K07397 yhfA; putative redox protein D PAM18_3195 hypothetical protein K07400 nfuA; Fe/S biogenesis protein NfuA D PAM18_1627 hypothetical protein K07401 K07401; selenoprotein W-related protein D PAM18_3526 putative xanthine dehydrogenase accessory factor X K07402 xdhC; xanthine dehydrogenase accessory factor D PAM18_4713 putative xanthine dehydrogenase accessory factor X K07402 xdhC; xanthine dehydrogenase accessory factor D PAM18_0449 putative membrane-bound protease K07403 nfeD; membrane-bound serine protease (ClpP class) C 99976 Replication and repair D PAM18_4483 putative methyltransferase K07443 ybaZ; methylated-DNA-protein-cysteine methyltransferase related protein D PAM18_5439 radC; DNA repair protein RadC K03630 radC; DNA repair protein RadC D PAM18_4014 hypothetical protein K09760 rmuC; DNA recombination protein RmuC D PAM18_4515 hypothetical protein K07460 yraN; putative endonuclease D PAM18_1084 GIY-YIG nuclease superfamily protein K07461 K07461; putative endonuclease D PAM18_0021 putative Rossmann fold nucleotide-binding protein K04096 smf; DNA processing protein D PAM18_2362 recombination factor protein RarA K07478 ycaJ; putative ATPase D PAM18_2242 hypothetical protein K07483 K07483; transposase D PAM18_3879 hypothetical protein K07491 rayT; REP-associated tyrosine transposase D PAM18_0043 conserved hypothetical protein K07491 rayT; REP-associated tyrosine transposase D PAM18_2243 putative transposase K07497 K07497; putative transposase D PAM18_3532 insertion sequence IS407 OrfB K07497 K07497; putative transposase D PAM18_3531 hypothetical protein K07497 K07497; putative transposase C 99979 Viral proteins C 99998 Others D PAM18_3515 hypothetical protein K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D PAM18_2186 putative transporter, formate/nitrite transporter family K21990 yfdC; formate-nitrite transporter family protein D PAM18_4248 putative amino acid permease K03293 TC.AAT; amino acid transporter, AAT family D PAM18_2964 putative amino acid permease K03293 TC.AAT; amino acid transporter, AAT family D PAM18_3225 putative amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D PAM18_5589 putative citrate transporter K03300 TC.CITMHS; citrate-Mg2+:H+ or citrate-Ca2+:H+ symporter, CitMHS family D PAM18_0448 putative phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family D PAM18_5325 putative phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family D PAM18_0282 gpuP; 3-guanidinopropionate transport protein K03307 TC.SSS; solute:Na+ symporter, SSS family D PAM18_3713 putative sodium:solute symport protein K03307 TC.SSS; solute:Na+ symporter, SSS family D PAM18_2505 putative sodium:alanine symporter K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D PAM18_2788 putative AGCS sodium/alanine/glycine symporter K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D PAM18_1305 putative amino acid permease K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D PAM18_3457 braB; branched chain amino acid transporter K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family D PAM18_3074 braZ; branched chain amino acid transporter BraZ K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family D PAM18_3396 putative transporter K03453 TC.BASS; bile acid:Na+ symporter, BASS family D PAM18_1705 putative transporter K03453 TC.BASS; bile acid:Na+ symporter, BASS family D PAM18_0442 putative transporter K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family D PAM18_0475 putative permease K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family D PAM18_5213 putative transporter K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family D PAM18_2971 putative transporter (membrane subunit) K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family C 99978 Cell growth D PAM18_1770 yciB; intracellular septation protein A K06190 ispZ; intracellular septation protein D PAM18_0587 SpoVR family protein K06415 spoVR; stage V sporulation protein R D PAM18_5247 putative membrane-bound metallopeptidase K22719 envC; murein hydrolase activator C 99993 Cell motility D PAM18_4810 hypothetical protein K07343 tfoX; DNA transformation protein and related proteins D PAM18_0857 cupB4; chaperone CupB4 K15540 ecpD; chaperone protein EcpD D PAM18_4055 cupC2; chaperone CupC2 K15540 ecpD; chaperone protein EcpD C 99995 Signaling proteins D PAM18_4612 hypothetical protein K03807 ampE; AmpE protein D PAM18_2411 putative activator of osmoprotectant transporter K03607 proQ; ProP effector D PAM18_1943 putative universal stress protein K06149 uspA; universal stress protein A D PAM18_4418 putative universal stress protein K14055 uspE; universal stress protein E D PAM18_5231 typA; regulatory protein TypA K06207 typA; GTP-binding protein D PAM18_3188 putative CBS-domain-containing membrane protein K07168 K07168; CBS domain-containing membrane protein D PAM18_0958 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins D PAM18_1021 hypothetical protein K07175 phoH2; PhoH-like ATPase D PAM18_0589 putative protein kinase K07180 prkA; serine protein kinase D PAM18_1738 putative signal-transduction protein K07182 K07182; CBS domain-containing protein D PAM18_0783 putative SH3 domain protein K07184 ygiM; SH3 domain protein D PAM18_5072 hypothetical protein K07186 smp; membrane protein D PAM18_4486 putative nucleotide-binding protein K09767 yajQ; cyclic-di-GMP-binding protein C 99992 Structural proteins D PAM18_2361 lolA; outer-membrane lipoprotein carrier protein K03634 lolA; outer membrane lipoprotein carrier protein D PAM18_4765 lolB; outer membrane lipoprotein LolB K02494 lolB; outer membrane lipoprotein LolB D PAM18_1732 vacJ; putative surface lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA D PAM18_2163 putative lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA D PAM18_3991 hypothetical protein K06077 slyB; outer membrane lipoprotein SlyB D PAM18_1299 putative outer membrane protein precursor K06142 hlpA; outer membrane protein D PAM18_5035 putative metalloendopeptidase-related membrane protein K12943 ygeR; lipoprotein YgeR D PAM18_0874 oprG; Outer membrane protein OprG precursor K07275 ompW; outer membrane protein D PAM18_4736 putative lipoprotein K07286 yajG; uncharacterized lipoprotein D PAM18_5262 Putative outer membrane biogenesis protein K07289 asmA; AsmA protein D PAM18_4991 hypothetical protein K07290 yhjG; AsmA family protein D PAM18_5329 hypothetical protein K07340 ybbJ; inner membrane protein D PAM18_1565 hypothetical protein K01993 ABC-2.TX; HlyD family secretion protein D PAM18_5351 putative membrane fusion protein K01993 ABC-2.TX; HlyD family secretion protein D PAM18_4684 hypothetical protein K02005 ABC.CD.TX; HlyD family secretion protein D PAM18_4988 osmE; DNA-binding transcriptional activator OsmE K04064 osmE; osmotically inducible lipoprotein OsmE D PAM18_0464 creD; hypothetical protein K06143 creD; inner membrane protein D PAM18_3653 ccmE; cytochrome c-type biogenesis protein CcmE K02197 ccmE; cytochrome c-type biogenesis protein CcmE D PAM18_3649 cycH; cytochrome c-type biogenesis protein K02200 ccmH; cytochrome c-type biogenesis protein CcmH D PAM18_3650 ccmH; cytochrome C-type biogenesis protein CcmH K02200 ccmH; cytochrome c-type biogenesis protein CcmH D PAM18_1134 hypothetical protein K15539 rodZ; cytoskeleton protein RodZ D PAM18_1663 hypothetical protein K21695 aaeX; protein AaeX D PAM18_2603 hypothetical protein K21695 aaeX; protein AaeX C 99994 Others D PAM18_5485 phoU; phosphate uptake regulatory protein PhoU K02039 phoU; phosphate transport system protein D PAM18_1456 putative bacterioferritin-associated ferredoxin K02192 bfd; bacterioferritin-associated ferredoxin D PAM18_5193 mdoD; glucan biosynthesis protein D K03670 mdoG; periplasmic glucans biosynthesis protein D PAM18_2489 putative membrane protein, TerC family K05794 terC; tellurite resistance protein TerC D PAM18_1591 phnK; phosphonate C-P lyase system protein PhnK K05781 phnK; putative phosphonate transport system ATP-binding protein D PAM18_0592 apaG; ApaG K06195 apaG; ApaG protein D PAM18_5396 cyaY; frataxin-like protein K06202 cyaY; iron-sulfur cluster assembly protein CyaY D PAM18_3374 hypothetical protein K07216 hr; hemerythrin D PAM18_1574 nosD; NosD protein K07218 nosD; nitrous oxidase accessory protein D PAM18_5512 putative monooxygenase K07222 K07222; putative flavoprotein involved in K+ transport D PAM18_4816 putative hemin degrading factor K07225 hmuS; putative hemin transport protein D PAM18_4461 icmP; Insulin-cleaving metalloproteinase outer membrane protein precursor K07231 K07231; putative iron-regulated protein D PAM18_2980 pcoB; copper resistance protein B precursor K07233 pcoB; copper resistance protein B D PAM18_2311 putative membraine protein K07234 K07234; uncharacterized protein involved in response to NO D PAM18_1571 nosL; NosL protein K19342 nosL; copper chaperone NosL D PAM18_2900 putative metallothionein K21904 smtA; metallothionein B B 09194 Poorly characterized C 99996 General function prediction only D PAM18_1400 glpM; membrane protein GlpM K02442 glpM; membrane protein GlpM D PAM18_1854 cvpA; putative colicin V production protein K03558 cvpA; membrane protein required for colicin V production D PAM18_0616 putative lytic enzyme K03791 K03791; putative chitinase D PAM18_2447 putative chitinase K03791 K03791; putative chitinase D PAM18_1344 putative chitinase K03791 K03791; putative chitinase D PAM18_4795 paraquat-inducible protein B-like protein K06192 pqiB; paraquat-inducible protein B D PAM18_0117 putative acyltransferase K02348 elaA; ElaA protein D PAM18_0487 hypothetical protein K05811 yfiM; putative lipoprotein D PAM18_4847 hypothetical protein K04065 osmY; hyperosmotically inducible periplasmic protein D PAM18_3060 hypothetical protein K06135 pqqA; pyrroloquinoline quinone biosynthesis protein A D PAM18_3059 pqqB; pyrroloquinoline quinone biosynthesis protein PqqB K06136 pqqB; pyrroloquinoline quinone biosynthesis protein B D PAM18_3057 pqqD; pyrroloquinoline quinone biosynthesis protein PqqD K06138 pqqD; pyrroloquinoline quinone biosynthesis protein D D PAM18_1750 csaA; CsaA protein K06878 K06878; tRNA-binding protein D PAM18_3407 putative esterase K07001 K07001; NTE family protein D PAM18_1730 putative patatin family protein K07001 K07001; NTE family protein D PAM18_1626 hypothetical protein K07001 K07001; NTE family protein D PAM18_0646 iron-sulfur cluster insertion protein ErpA K15724 erpA; iron-sulfur cluster insertion protein D PAM18_5073 putative membrane-bound metal-dependent hydrolase K07038 K07038; inner membrane protein D PAM18_2217 hypothetical protein K07058 K07058; membrane protein D PAM18_4087 putative ribonuclease K07058 K07058; membrane protein D PAM18_4478 fxsA; FxsA K07113 fxsA; UPF0716 protein FxsA D PAM18_1278 putative Fe-S center assembly protein K02426 sufE; cysteine desulfuration protein SufE D PAM18_4182 hypothetical protein K07146 K07146; UPF0176 protein D PAM18_2348 hypothetical protein K07153 hflD; high frequency lysogenization protein D PAM18_3549 hypothetical protein K04750 phnB; PhnB protein D PAM18_4738 hypothetical protein K04750 phnB; PhnB protein D PAM18_5472 putative GlcG protein K11477 glcG; glc operon protein GlcG D PAM18_2760 putative arsenical resistance protein K11811 arsH; arsenical resistance protein ArsH D PAM18_4460 putative lemA-like protein K03744 lemA; LemA protein D PAM18_0538 hypothetical protein K03744 lemA; LemA protein D PAM18_4077 hypothetical protein K03745 slyX; SlyX protein D PAM18_4657 hypothetical protein K05805 creA; CreA protein D PAM18_3844 hypothetical protein K02742 sprT; SprT protein D PAM18_1853 putative DedD protein K03749 dedD; DedD protein D PAM18_5152 putative Type II secretory pathway protein K03112 damX; DamX protein D PAM18_4188 cbpD; chitin-binding protein CbpD precursor K03933 cpbD; chitin-binding protein D PAM18_0911 hypothetical protein K03975 dedA; membrane-associated protein D PAM18_4796 paraquat-inducible protein A K03808 pqiA; paraquat-inducible protein A D PAM18_4797 putative paraquat-inducible protein K03808 pqiA; paraquat-inducible protein A D PAM18_4939 hypothetical protein K08983 K08983; putative membrane protein D PAM18_3980 hypothetical protein K08985 K08985; putative lipoprotein D PAM18_4003 hypothetical protein K08993 yhhL; putative membrane protein D PAM18_2907 putative outer membrane protein K08995 K08995; putative membrane protein D PAM18_4006 hypothetical protein K09858 K09858; SEC-C motif domain protein D PAM18_1272 putative lipoprotein K09914 K09914; putative lipoprotein D PAM18_0130 putative alkylphosphonate uptake protein K06193 phnA; protein PhnA C 99997 Function unknown D PAM18_4706 ankyrin-like protein K06867 K06867; uncharacterized protein D PAM18_2541 hypothetical protein K06867 K06867; uncharacterized protein D PAM18_1681 putative ankyrin domain protein K06867 K06867; uncharacterized protein D PAM18_3680 hypothetical protein K06872 K06872; uncharacterized protein D PAM18_3681 hypothetical protein K06872 K06872; uncharacterized protein D PAM18_0537 putative dehydrogenase K06872 K06872; uncharacterized protein D PAM18_2846 hypothetical protein K06884 K06884; uncharacterized protein D PAM18_2893 hypothetical protein K06884 K06884; uncharacterized protein D PAM18_2817 hypothetical protein K06889 K06889; uncharacterized protein D PAM18_1251 putative hydrolase, alpha/beta family K06889 K06889; uncharacterized protein D PAM18_2870 putative hydrolase K06889 K06889; uncharacterized protein D PAM18_3367 putative hydrolase K06889 K06889; uncharacterized protein D PAM18_1109 putative hydrolase K06889 K06889; uncharacterized protein D PAM18_3227 hypothetical protein K06893 K06893; uncharacterized protein D PAM18_1633 putative isomerase K06893 K06893; uncharacterized protein D PAM18_2140 putative ATPase K06923 K06923; uncharacterized protein D PAM18_3258 hypothetical protein K06938 K06938; uncharacterized protein D PAM18_1193 hypothetical protein K06938 K06938; uncharacterized protein D PAM18_5395 hypothetical protein K06938 K06938; uncharacterized protein D PAM18_1776 putative Fe-S protein K06938 K06938; uncharacterized protein D PAM18_3469 putative Fe-S-cluster oxidoreductase K06940 K06940; uncharacterized protein D PAM18_1762 putative ferredoxin K06940 K06940; uncharacterized protein D PAM18_1283 hypothetical protein K06940 K06940; uncharacterized protein D PAM18_4927 hypothetical protein K06940 K06940; uncharacterized protein D PAM18_4638 hypothetical protein K06950 K06950; uncharacterized protein D PAM18_3297 hypothetical protein K06975 K06975; uncharacterized protein D PAM18_4401 putative deacetylase K06986 K06986; uncharacterized protein D PAM18_4148 hypothetical protein K06987 K06987; uncharacterized protein D PAM18_4220 putative ring-cleaving dioxygenase K06991 K06991; uncharacterized protein D PAM18_3284 putative peptidase K06992 K06992; uncharacterized protein D PAM18_3092 putative double-glycine peptidase K06992 K06992; uncharacterized protein D PAM18_3124 hypothetical protein K06995 K06995; uncharacterized protein D PAM18_2203 hypothetical protein K06995 K06995; uncharacterized protein D PAM18_2722 putative enzyme of the cupin superfamily K06995 K06995; uncharacterized protein D PAM18_1540 hypothetical protein K06995 K06995; uncharacterized protein D PAM18_5434 hypothetical protein K06995 K06995; uncharacterized protein D PAM18_3375 putative enzyme K06996 K06996; uncharacterized protein D PAM18_5079 putative esterase K07000 K07000; uncharacterized protein D PAM18_1884 putative export protein K07003 K07003; uncharacterized protein D PAM18_1031 putative extracellular nuclease K07004 K07004; uncharacterized protein D PAM18_1924 putative oxidase K07006 K07006; uncharacterized protein D PAM18_4115 hypothetical protein K07014 K07014; uncharacterized protein D PAM18_4531 putative hydrolase K07018 K07018; uncharacterized protein D PAM18_0367 putative hydrolase K07019 K07019; uncharacterized protein D PAM18_3489 putative hydrolase K07020 K07020; uncharacterized protein D PAM18_4808 hypothetical protein K07028 K07028; uncharacterized protein D PAM18_4609 hypothetical protein K07032 K07032; uncharacterized protein D PAM18_3691 hypothetical protein K07039 K07039; uncharacterized protein D PAM18_4211 hypothetical protein K07044 K07044; uncharacterized protein D PAM18_3507 putative hydrolase K07044 K07044; uncharacterized protein D PAM18_1640 putative hydrolase K07044 K07044; uncharacterized protein D PAM18_4824 putative zinc metallopeptidase K07054 K07054; uncharacterized protein D PAM18_4032 hypothetical protein K07068 K07068; uncharacterized protein D PAM18_0069 putative nucleic-acid-binding protein K07070 K07070; uncharacterized protein D PAM18_4753 putative sugar nucleotide epimerase K07071 K07071; uncharacterized protein D PAM18_4677 putative nucleotidyltransferase K07074 K07074; uncharacterized protein D PAM18_2418 putative nitroreductase K07078 K07078; uncharacterized protein D PAM18_5667 putative periplasmic transport protein K07080 K07080; uncharacterized protein D PAM18_1090 putative periplasmic transport protein K07080 K07080; uncharacterized protein D PAM18_2116 putative permease K07090 K07090; uncharacterized protein D PAM18_0273 hypothetical protein K07090 K07090; uncharacterized protein D PAM18_1164 hypothetical protein K07090 K07090; uncharacterized protein D PAM18_1508 putative transmembrane protein K07090 K07090; uncharacterized protein D PAM18_4247 hypothetical protein K07090 K07090; uncharacterized protein D PAM18_3220 putative membrain protein K07090 K07090; uncharacterized protein D PAM18_5139 hypothetical protein K07090 K07090; uncharacterized protein D PAM18_0338 putative permease K07090 K07090; uncharacterized protein D PAM18_4904 putative peroxiredoxin K07092 K07092; uncharacterized protein D PAM18_2340 putative phosphatase K07093 K07093; uncharacterized protein D PAM18_0349 putative phosphoesterase K07095 K07095; uncharacterized protein D PAM18_1315 putative inner membrane protein K07112 K07112; uncharacterized protein D PAM18_5550 hypothetical protein K07112 K07112; uncharacterized protein D PAM18_4298 hypothetical protein K07118 K07118; uncharacterized protein D PAM18_4288 hypothetical protein K07120 K07120; uncharacterized protein D PAM18_4514 putative lipoprotein K07121 K07121; uncharacterized protein D PAM18_0639 putative short-chain dehydrogenase K07124 K07124; uncharacterized protein D PAM18_4943 putative short-chain dehydrogenase K07124 K07124; uncharacterized protein D PAM18_4607 hypothetical protein K07126 K07126; uncharacterized protein D PAM18_0358 hypothetical protein K07126 K07126; uncharacterized protein D PAM18_0961 hypothetical protein K07126 K07126; uncharacterized protein D PAM18_1938 hypothetical protein K07140 K07140; MOSC domain-containing protein D PAM18_0928 hypothetical protein K07157 K07157; uncharacterized protein D PAM18_2999 hypothetical protein K08998 K08998; uncharacterized protein D PAM18_0579 hypothetical protein K09117 K09117; uncharacterized protein D PAM18_0391 hypothetical protein K09131 K09131; uncharacterized protein D PAM18_0942 hypothetical protein K09158 K09158; uncharacterized protein D PAM18_3604 hypothetical protein K09160 K09160; uncharacterized protein D PAM18_5366 hypothetical protein K09768 K09768; uncharacterized protein D PAM18_1769 yciI; YciI-like protein K09780 K09780; uncharacterized protein D PAM18_3185 hypothetical protein K09781 K09781; uncharacterized protein D PAM18_0588 hypothetical protein K09786 K09786; uncharacterized protein D PAM18_3692 hypothetical protein K09790 K09790; uncharacterized protein D PAM18_1981 hypothetical protein K09791 K09791; uncharacterized protein D PAM18_3502 hypothetical protein K09792 K09792; uncharacterized protein D PAM18_4705 hypothetical protein K09794 K09794; uncharacterized protein D PAM18_5249 putative divergent polysaccharide deacetylase K09798 K09798; uncharacterized protein D PAM18_4874 hypothetical protein K09801 K09801; uncharacterized protein D PAM18_1968 hypothetical protein K05952 K05952; uncharacterized protein D PAM18_3916 hypothetical protein K00243 K00243; uncharacterized protein D PAM18_5074 hypothetical protein K09857 K09857; uncharacterized protein D PAM18_1447 hypothetical protein K09861 K09861; uncharacterized protein D PAM18_4622 zinc-binding protein K09862 K09862; uncharacterized protein D PAM18_5343 hypothetical protein K09895 K09895; uncharacterized protein D PAM18_1502 hypothetical protein K09898 K09898; uncharacterized protein D PAM18_3608 hypothetical protein K09902 K09902; uncharacterized protein D PAM18_4532 hypothetical protein K09908 K09908; uncharacterized protein D PAM18_4102 hypothetical protein K09912 K09912; uncharacterized protein D PAM18_1512 hypothetical protein K09915 K09915; uncharacterized protein D PAM18_1878 hypothetical protein K09916 K09916; uncharacterized protein D PAM18_1553 hypothetical protein K09918 K09918; uncharacterized protein D PAM18_1741 hypothetical protein K09919 K09919; uncharacterized protein D PAM18_5081 hypothetical protein K09920 K09920; uncharacterized protein D PAM18_5400 hypothetical protein K09921 K09921; uncharacterized protein D PAM18_3471 hypothetical protein K09922 K09922; uncharacterized protein D PAM18_1914 hypothetical protein K09923 K09923; uncharacterized protein D PAM18_3200 hypothetical protein K09923 K09923; uncharacterized protein D PAM18_4184 hypothetical protein K09924 K09924; uncharacterized protein D PAM18_3512 hypothetical protein K09925 K09925; uncharacterized protein D PAM18_3499 hypothetical protein K09926 K09926; uncharacterized protein D PAM18_2119 hypothetical protein K09927 K09927; uncharacterized protein D PAM18_1976 hypothetical protein K09928 K09928; uncharacterized protein D PAM18_1687 hypothetical protein K09929 K09929; uncharacterized protein D PAM18_0834 hypothetical protein K09929 K09929; uncharacterized protein D PAM18_1686 hypothetical protein K09930 K09930; uncharacterized protein D PAM18_0833 hypothetical protein K09930 K09930; uncharacterized protein D PAM18_1611 hypothetical protein K09931 K09931; uncharacterized protein D PAM18_1530 hypothetical protein K09932 K09932; uncharacterized protein D PAM18_4581 hypothetical protein K09934 K09934; uncharacterized protein D PAM18_5051 putative transmembrane protein K09937 K09937; uncharacterized protein D PAM18_4092 hypothetical protein K09938 K09938; uncharacterized protein D PAM18_5453 hypothetical protein K09940 K09940; uncharacterized protein D PAM18_0988 hypothetical protein K09945 K09945; uncharacterized protein D PAM18_0326 hypothetical protein K09946 K09946; uncharacterized protein D PAM18_4464 hypothetical protein K09947 K09947; uncharacterized protein D PAM18_1526 hypothetical protein K09948 K09948; uncharacterized protein D PAM18_0875 putative lipoprotein K09950 K09950; uncharacterized protein D PAM18_5543 hypothetical protein K09950 K09950; uncharacterized protein D PAM18_1373 hypothetical protein K09954 K09954; uncharacterized protein D PAM18_0850 hypothetical protein K09956 K09956; uncharacterized protein D PAM18_3051 hypothetical protein K09957 K09957; uncharacterized protein D PAM18_5514 hypothetical protein K09958 K09958; uncharacterized protein D PAM18_4887 hypothetical protein K09962 K09962; uncharacterized protein D PAM18_4455 hypothetical protein K09964 K09964; uncharacterized protein D PAM18_1179 hypothetical protein K09965 K09965; uncharacterized protein D PAM18_3475 putative periplasmic protein K09974 K09974; uncharacterized protein D PAM18_5218 hypothetical protein K09975 K09975; uncharacterized protein D PAM18_1874 hypothetical protein K09977 K09977; uncharacterized protein D PAM18_5425 hypothetical protein K09978 K09978; uncharacterized protein D PAM18_1214 hypothetical protein K09980 K09980; uncharacterized protein D PAM18_4324 hypothetical protein K09982 K09982; uncharacterized protein D PAM18_0056 hypothetical protein K09983 K09983; uncharacterized protein D PAM18_3193 hypothetical protein K09984 K09984; uncharacterized protein D PAM18_2007 hypothetical protein K09986 K09986; uncharacterized protein D PAM18_2267 hypothetical protein K09989 K09989; uncharacterized protein D PAM18_5326 putative phosphate transport regulator K07220 K07220; uncharacterized protein D PAM18_4463 putative lipoprotein K07338 K07338; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 3, 2024