+D GENES KO #

  KEGG Orthology (KO) - Pyrobaculum aerophilum

% ! A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:pai00010] D PAE3437 glucokinase (ROK family protein), conjectural K25026 glk; glucokinase [EC:2.7.1.2] D PAE1610 glucose-6-phosphate isomerase, conjectural K15916 pgi-pmi; glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8] D PAE0944 conserved hypothetical protein K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11] D PAE1501 triosephosphate isomerase (tpiA) K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D PAE1740 glyceraldehyde-3-phosphate dehydrogenase K00150 gap2; glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) [EC:1.2.1.59] D PAE1742 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D PAE2326 phosphonopyruvate decarboxylase, conjectural K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D PAE0812 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D PAE0819 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D PAE3383 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D PAE2423 phosphoenolpyruvate synthase (pyruvate,water dikinase) K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D PAE2644 pyruvate dehydrogenase E1 alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D PAE2646 pyruvate dehydrogenase E1 beta subunit K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D PAE2648 pyruvate dehydrogenase E2 (dihydrolipoamide acetyltransferase) K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D PAE2649 pyruvate dehydrogenase E3 (dihydrolipoamide dehydrogenase) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PAE1042 pyruvate ferredoxin oxidoreductase alpha subunit (porA) K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D PAE3275 2-ketoacid ferredoxin oxidoreductase alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D PAE1043 pyruvate ferredoxin oxidoreductase beta subunit (porB) K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D PAE3274 2-ketoacid ferredoxin oxidoreductase beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D PAE1040 pyruvate ferredoxin oxidoreductase gamma subunit (porG) K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D PAE3279 2-ketoacid ferredoxin oxidoreductase gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D PAE1041 pyruvate ferredoxin oxidoreductase delta subunit (porD) K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D PAE3276 2-ketoacid ferredoxin oxidoreductase delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D PAE0939 2-oxoacid ferredoxin oxidoreductase alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D PAE1559 2-oxoacid ferredoxin oxidoreductase alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D PAE2736 2-oxoacid ferredoxin oxidoreductase alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D PAE0938 2-oxoacid ferredoxin oxidoreductase beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D PAE1558 2-oxoacid ferredoxin oxidoreductase beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D PAE2737 2-oxoacid ferredoxin oxidoreductase beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D PAE2931 alcohol dehydrogenase (Zinc) K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D PAE2051 alcohol dehydrogenase (Zinc) K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D PAE2480 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PAE2481 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PAE2865 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PAE2867 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PAE3250 conserved hypothetical protein K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D PAE3249 conserved hypothetical protein K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13] D PAE1029 aldehyde ferredoxin oxidoreductase (aor) K11389 gapor; glyceraldehyde-3-phosphate dehydrogenase (ferredoxin) [EC:1.2.7.6] C 00020 Citrate cycle (TCA cycle) [PATH:pai00020] D PAE3585 citrate synthase part 2, authentic frameshift K01647 CS; citrate synthase [EC:2.3.3.1] D PAE1689 citrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5] D PAE3584 citrate synthase part 1, authentic frameshift K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5] D PAE1499 aconitate hydratase K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D PAE1651 isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D PAE2649 pyruvate dehydrogenase E3 (dihydrolipoamide dehydrogenase) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PAE0939 2-oxoacid ferredoxin oxidoreductase alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D PAE1559 2-oxoacid ferredoxin oxidoreductase alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D PAE2736 2-oxoacid ferredoxin oxidoreductase alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D PAE0938 2-oxoacid ferredoxin oxidoreductase beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D PAE1558 2-oxoacid ferredoxin oxidoreductase beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D PAE2737 2-oxoacid ferredoxin oxidoreductase beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D PAE2313 succinyl-CoA synthetase alpha subunit (sucD) K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D PAE2312 succinyl-CoA synthetase beta subunit (sucC) K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D PAE0716 succinate dehydrogenase flavoprotein subunit (sdhA) K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D PAE0717 succinate dehydrogenase iron-sulfur subunit (sdhB) K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D PAE0718 succinate dehydrogenase cytochrome b subunit (sdhC) K00241 sdhC; succinate dehydrogenase cytochrome b subunit D PAE0719 succinate dehydrogenase subunit D (sdhD) K18860 sdhD; succinate dehydrogenase subunit D D PAE2132 fumarate hydratase class I alpha subunit K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2] D PAE2131 fumarate hydratase class I beta subunit K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2] D PAE2743 fumarate hydratase class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D PAE2370 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D PAE2644 pyruvate dehydrogenase E1 alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D PAE2646 pyruvate dehydrogenase E1 beta subunit K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D PAE2648 pyruvate dehydrogenase E2 (dihydrolipoamide acetyltransferase) K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D PAE1042 pyruvate ferredoxin oxidoreductase alpha subunit (porA) K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D PAE3275 2-ketoacid ferredoxin oxidoreductase alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D PAE1043 pyruvate ferredoxin oxidoreductase beta subunit (porB) K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D PAE3274 2-ketoacid ferredoxin oxidoreductase beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D PAE1040 pyruvate ferredoxin oxidoreductase gamma subunit (porG) K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D PAE3279 2-ketoacid ferredoxin oxidoreductase gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D PAE1041 pyruvate ferredoxin oxidoreductase delta subunit (porD) K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D PAE3276 2-ketoacid ferredoxin oxidoreductase delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] C 00030 Pentose phosphate pathway [PATH:pai00030] D PAE1610 glucose-6-phosphate isomerase, conjectural K15916 pgi-pmi; glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8] D PAE1927 transketolase (C terminal section) K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D PAE1929 transketolase (N terminal section) K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D PAE1027 ribose 5-phosphate isomerase K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D PAE1679 D-arabino 3-hexulose 6-phosphate formaldehyde lyase, conjectural K08093 hxlA; 3-hexulose-6-phosphate synthase [EC:4.1.2.43] D PAE1489 conserved protein with sugar isomerase (SIS) domain K08094 hxlB; 6-phospho-3-hexuloisomerase [EC:5.3.1.27] D PAE1231 deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D PAE0835 sugar kinase, possible phosphofructokinase K26208 E2.7.1.239; alpha-D-ribose-1-phosphate 5-kinase (ATP) [EC:2.7.1.239] D PAE2980 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D PAE0622 aldehyde ferredoxin oxidoreductase (aor) K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5] D PAE2052 aldehyde ferredoxin oxidoreductase (aor) K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5] D PAE3427 aldehyde ferredoxin oxidoreductase (aor) K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5] D PAE1309 conserved hypothetical protein K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D PAE0944 conserved hypothetical protein K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11] C 00040 Pentose and glucuronate interconversions [PATH:pai00040] D PAE2796 conserved hypothetical protein K26933 kdgF; unsaturated pyranuronate lyase [EC:4.2.99.25] D PAE2158 fuculose-1-phosphate aldolase (fucA) K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] C 00051 Fructose and mannose metabolism [PATH:pai00051] D PAE1610 glucose-6-phosphate isomerase, conjectural K15916 pgi-pmi; glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8] D PAE0764 phosphomannomutase (pmm) K01840 manB; phosphomannomutase [EC:5.4.2.8] D PAE3554 mannose-1-phosphate guanyltransferase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D PAE2158 fuculose-1-phosphate aldolase (fucA) K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] D PAE0944 conserved hypothetical protein K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11] D PAE1501 triosephosphate isomerase (tpiA) K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] C 00052 Galactose metabolism [PATH:pai00052] D PAE1185 galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D PAE1184 galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D PAE1922 UDP-glucose 4-epimerase (galE-1) K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D PAE3437 glucokinase (ROK family protein), conjectural K25026 glk; glucokinase [EC:2.7.1.2] D PAE1968 alpha-glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20] C 00053 Ascorbate and aldarate metabolism D PAE2480 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00500 Starch and sucrose metabolism [PATH:pai00500] D PAE1968 alpha-glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D PAE1736 beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] D PAE3429 glycogen synthase (starch (bacterial glycogen) synthase), putative K00703 glgA; starch synthase [EC:2.4.1.21] D PAE3422 conserved hypothetical protein K00688 PYG; glycogen phosphorylase [EC:2.4.1.1] D PAE3428 conserved hypothetical protein K07405 E3.2.1.1A; alpha-amylase [EC:3.2.1.1] D PAE1209 4-alpha-glucanotransferase (malQ) K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25] D PAE1278 trehalose synthase K13057 treT; trehalose synthase [EC:2.4.1.245] D PAE1272 trehalose-6-phosphate synthase K16055 TPS; trehalose 6-phosphate synthase/phosphatase [EC:2.4.1.15 3.1.3.12] D PAE3437 glucokinase (ROK family protein), conjectural K25026 glk; glucokinase [EC:2.7.1.2] D PAE1610 glucose-6-phosphate isomerase, conjectural K15916 pgi-pmi; glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:pai00520] D PAE3025 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D PAE3437 glucokinase (ROK family protein), conjectural K25026 glk; glucokinase [EC:2.7.1.2] D PAE1185 galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D PAE1184 galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D PAE1922 UDP-glucose 4-epimerase (galE-1) K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D PAE1610 glucose-6-phosphate isomerase, conjectural K15916 pgi-pmi; glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8] D PAE0764 phosphomannomutase (pmm) K01840 manB; phosphomannomutase [EC:5.4.2.8] D PAE3554 mannose-1-phosphate guanyltransferase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D PAE2053 pleiotropic regulatory protein, conjectural K13010 per; perosamine synthetase [EC:2.6.1.102] C 00620 Pyruvate metabolism [PATH:pai00620] D PAE2481 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PAE2865 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PAE2867 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PAE1042 pyruvate ferredoxin oxidoreductase alpha subunit (porA) K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D PAE3275 2-ketoacid ferredoxin oxidoreductase alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D PAE1043 pyruvate ferredoxin oxidoreductase beta subunit (porB) K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D PAE3274 2-ketoacid ferredoxin oxidoreductase beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D PAE1040 pyruvate ferredoxin oxidoreductase gamma subunit (porG) K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D PAE3279 2-ketoacid ferredoxin oxidoreductase gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D PAE1041 pyruvate ferredoxin oxidoreductase delta subunit (porD) K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D PAE3276 2-ketoacid ferredoxin oxidoreductase delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D PAE0939 2-oxoacid ferredoxin oxidoreductase alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D PAE1559 2-oxoacid ferredoxin oxidoreductase alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D PAE2736 2-oxoacid ferredoxin oxidoreductase alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D PAE0938 2-oxoacid ferredoxin oxidoreductase beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D PAE1558 2-oxoacid ferredoxin oxidoreductase beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D PAE2737 2-oxoacid ferredoxin oxidoreductase beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D PAE2644 pyruvate dehydrogenase E1 alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D PAE2646 pyruvate dehydrogenase E1 beta subunit K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D PAE2648 pyruvate dehydrogenase E2 (dihydrolipoamide acetyltransferase) K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D PAE2649 pyruvate dehydrogenase E3 (dihydrolipoamide dehydrogenase) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PAE2931 alcohol dehydrogenase (Zinc) K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D PAE2051 alcohol dehydrogenase (Zinc) K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D PAE0819 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D PAE1232 acylphosphatase, putative K01512 acyP; acylphosphatase [EC:3.6.1.7] D PAE2480 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PAE2827 coA transferase, putative K01026 pct; propionate CoA-transferase [EC:2.8.3.1] D PAE3250 conserved hypothetical protein K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D PAE3249 conserved hypothetical protein K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13] D PAE1688 malate oxidoreductase (mae) K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D PAE2370 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D PAE2132 fumarate hydratase class I alpha subunit K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2] D PAE2131 fumarate hydratase class I beta subunit K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2] D PAE2743 fumarate hydratase class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D PAE3416 conserved hypothetical protein K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D PAE3383 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D PAE2423 phosphoenolpyruvate synthase (pyruvate,water dikinase) K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D PAE1287 malate synthase (glcB) K01638 aceB; malate synthase [EC:2.3.3.9] D PAE1220 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE1377 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2488 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2486 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2183 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2471 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE1330 2-isopropylmalate synthase (leuA) K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D PAE1986 2-isopropylmalate synthase (leuA) with possible unusual start codon K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D PAE1993 2-isopropylmalate synthase (leuA) with possible unusual start codon K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:pai00630] D PAE1872 isocitrate lyase K01637 ICL; isocitrate/methylisocitrate lyase [EC:4.1.3.1 4.1.3.30] D PAE2481 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PAE2865 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PAE2867 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PAE1287 malate synthase (glcB) K01638 aceB; malate synthase [EC:2.3.3.9] D PAE2370 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D PAE3585 citrate synthase part 2, authentic frameshift K01647 CS; citrate synthase [EC:2.3.3.1] D PAE1689 citrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5] D PAE3584 citrate synthase part 1, authentic frameshift K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5] D PAE1499 aconitate hydratase K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D PAE1220 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE1377 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2488 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2486 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2183 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2471 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE1286 glycolate oxidase subunit glcD K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14] D PAE2035 D-lactate dehydrogenase K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14] D PAE1284 glycolate oxidase subunit glcE K11472 glcE; glycolate dehydrogenase FAD-binding subunit [EC:1.1.99.14] D PAE1282 glycolate oxidase subunit glcF K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14] D PAE1038 D-3-phosphoglycerate dehydrogenase (serA) K00015 gyaR; glyoxylate reductase [EC:1.1.1.26] D PAE3068 phosphoglycolate phosphatase (pgp), conjectural K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D PAE3495 conserved hypothetical protein K22223 pgp; phosphoglycolate phosphatase [EC:3.1.3.18] D PAE3442 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAE2556 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAE0798 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D PAE2649 pyruvate dehydrogenase E3 (dihydrolipoamide dehydrogenase) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PAE1309 conserved hypothetical protein K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D PAE2662 formate dehydrogenase alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D PAE2661 formate dehydrogenase beta subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit D PAE2660 hypothetical protein K00127 fdoI; formate dehydrogenase subunit gamma C 00640 Propanoate metabolism [PATH:pai00640] D PAE2481 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PAE2865 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PAE2867 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PAE2827 coA transferase, putative K01026 pct; propionate CoA-transferase [EC:2.8.3.1] D PAE3250 conserved hypothetical protein K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D PAE3249 conserved hypothetical protein K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13] D PAE2649 pyruvate dehydrogenase E3 (dihydrolipoamide dehydrogenase) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PAE1042 pyruvate ferredoxin oxidoreductase alpha subunit (porA) K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D PAE3275 2-ketoacid ferredoxin oxidoreductase alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D PAE1043 pyruvate ferredoxin oxidoreductase beta subunit (porB) K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D PAE3274 2-ketoacid ferredoxin oxidoreductase beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D PAE1040 pyruvate ferredoxin oxidoreductase gamma subunit (porG) K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D PAE3279 2-ketoacid ferredoxin oxidoreductase gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D PAE1041 pyruvate ferredoxin oxidoreductase delta subunit (porD) K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D PAE3276 2-ketoacid ferredoxin oxidoreductase delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D PAE1799 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D PAE2312 succinyl-CoA synthetase beta subunit (sucC) K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D PAE2313 succinyl-CoA synthetase alpha subunit (sucD) K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D PAE1689 citrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5] D PAE3584 citrate synthase part 1, authentic frameshift K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5] D PAE1717 propionate catabolism protein prpD K01720 prpD; 2-methylcitrate dehydratase [EC:4.2.1.79] D PAE1499 aconitate hydratase K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D PAE1716 carboxyphosphonoenolpyruvate phosphonomutase (prpB) K03417 prpB; methylisocitrate lyase [EC:4.1.3.30] D PAE1872 isocitrate lyase K01637 ICL; isocitrate/methylisocitrate lyase [EC:4.1.3.1 4.1.3.30] C 00650 Butanoate metabolism [PATH:pai00650] D PAE1220 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE1377 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2488 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2486 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2183 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2471 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE0716 succinate dehydrogenase flavoprotein subunit (sdhA) K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D PAE0717 succinate dehydrogenase iron-sulfur subunit (sdhB) K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D PAE0718 succinate dehydrogenase cytochrome b subunit (sdhC) K00241 sdhC; succinate dehydrogenase cytochrome b subunit D PAE0719 succinate dehydrogenase subunit D (sdhD) K18860 sdhD; succinate dehydrogenase subunit D D PAE1799 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D PAE2693 4-hydroxyphenylacetate-3-hydroxylase, conjectural K14534 abfD; 4-hydroxybutyryl-CoA dehydratase / vinylacetyl-CoA-Delta-isomerase [EC:4.2.1.120 5.3.3.3] D PAE1042 pyruvate ferredoxin oxidoreductase alpha subunit (porA) K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D PAE3275 2-ketoacid ferredoxin oxidoreductase alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D PAE1043 pyruvate ferredoxin oxidoreductase beta subunit (porB) K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D PAE3274 2-ketoacid ferredoxin oxidoreductase beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D PAE1040 pyruvate ferredoxin oxidoreductase gamma subunit (porG) K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D PAE3279 2-ketoacid ferredoxin oxidoreductase gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D PAE1041 pyruvate ferredoxin oxidoreductase delta subunit (porD) K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D PAE3276 2-ketoacid ferredoxin oxidoreductase delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D PAE0939 2-oxoacid ferredoxin oxidoreductase alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D PAE1559 2-oxoacid ferredoxin oxidoreductase alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D PAE2736 2-oxoacid ferredoxin oxidoreductase alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D PAE0938 2-oxoacid ferredoxin oxidoreductase beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D PAE1558 2-oxoacid ferredoxin oxidoreductase beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D PAE2737 2-oxoacid ferredoxin oxidoreductase beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D PAE2185 3-oxoacyl-[acyl-carrier-protein] synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] D PAE3300 acetolactate synthase large subunit (ilvB) K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D PAE3299 acetolactate synthase small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6] C 00660 C5-Branched dibasic acid metabolism [PATH:pai00660] D PAE3300 acetolactate synthase large subunit (ilvB) K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D PAE3299 acetolactate synthase small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6] D PAE2312 succinyl-CoA synthetase beta subunit (sucC) K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D PAE2313 succinyl-CoA synthetase alpha subunit (sucD) K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D PAE1984 3-isopropylmalate dehydratase large subunit (leuC) K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D PAE1991 3-isopropylmalate dehydratase small subunit (leuD) K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D PAE1995 3-isopropylmalate dehydrogenase (leuB) K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] C 00562 Inositol phosphate metabolism [PATH:pai00562] D PAE3055 extragenic suppressor protein suhB homolog K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D PAE1761 myo-inositol-1-phosphate synthase, conjectural K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4] D PAE1501 triosephosphate isomerase (tpiA) K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:pai00190] D PAE3520 NADH-ubiquinone oxidoreductase subunit K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2] D PAE2928 NADH-ubiquinone oxidoreductase subunit K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2] D PAE2926 NADH-ubiquinone oxidoreductase subunit K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2] D PAE1582 NADH-ubiquinone oxidoreductase subunit K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2] D PAE1581 NADH-ubiquinone oxidoreductase subunit K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2] D PAE1580 NADH-ubiquinone oxidoreductase subunit K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2] D PAE1578 NADH-ubiquinone oxidoreductase subunit K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2] D PAE1577 NADH-ubiquinone oxidoreductase subunit K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2] D PAE1568 NADH-ubiquinone oxidoreductase subunit K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2] D PAE1576 NADH-ubiquinone oxidoreductase subunit K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2] D PAE0716 succinate dehydrogenase flavoprotein subunit (sdhA) K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D PAE0717 succinate dehydrogenase iron-sulfur subunit (sdhB) K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D PAE0718 succinate dehydrogenase cytochrome b subunit (sdhC) K00241 sdhC; succinate dehydrogenase cytochrome b subunit D PAE0719 succinate dehydrogenase subunit D (sdhD) K18860 sdhD; succinate dehydrogenase subunit D D PAE1333 cytochrome C oxidase assembly factor K02257 COX10; heme o synthase [EC:2.5.1.141] D PAE3597 cytochrome C oxidase assembly factor K02257 COX10; heme o synthase [EC:2.5.1.141] D PAE1357 cytochrome C oxidase subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9] D PAE1355 cytochrome C oxidase subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9] D PAE1338 cytochrome C oxidase subunit II K02826 qoxA; cytochrome aa3-600 menaquinol oxidase subunit II [EC:7.1.1.5] D PAE1337 cytochrome C oxidase subunit I/III K24011 soxM; cytochrome aa3-type oxidase subunit I/III [EC:7.1.1.4] D PAE0663 H+-transporting ATP synthase subunit A (atpA) K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1] D PAE1146 H+-transporting ATP synthase subunit B (atpB) K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B D PAE0753 H+-transporting ATP synthase subunit C (atpC) K02119 ATPVC; V/A-type H+/Na+-transporting ATPase subunit C D PAE0758 H+-transporting ATP synthase subunit D (atpD) K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D D PAE0662 conserved hypothetical protein K02121 ATPVE; V/A-type H+/Na+-transporting ATPase subunit E D PAE0661 H+-transporting ATP synthase subunit F (atpF) K02122 ATPVF; V/A-type H+/Na+-transporting ATPase subunit F D PAE1773 H+-transporting ATP synthase subunit I (atpI), conjectural K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I D PAE0754 H+-transporting ATP synthase subunit C (atpC) K02124 ATPVK; V/A-type H+/Na+-transporting ATPase subunit K C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation by Calvin cycle [PATH:pai00710] D PAE1742 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D PAE1740 glyceraldehyde-3-phosphate dehydrogenase K00150 gap2; glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) [EC:1.2.1.59] D PAE1927 transketolase (C terminal section) K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D PAE1929 transketolase (N terminal section) K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D PAE1027 ribose 5-phosphate isomerase K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D PAE1501 triosephosphate isomerase (tpiA) K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D PAE3416 conserved hypothetical protein K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D PAE3383 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D PAE2370 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] C 00720 Other carbon fixation pathways [PATH:pai00720] D PAE1042 pyruvate ferredoxin oxidoreductase alpha subunit (porA) K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D PAE3275 2-ketoacid ferredoxin oxidoreductase alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D PAE1043 pyruvate ferredoxin oxidoreductase beta subunit (porB) K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D PAE3274 2-ketoacid ferredoxin oxidoreductase beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D PAE1040 pyruvate ferredoxin oxidoreductase gamma subunit (porG) K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D PAE3279 2-ketoacid ferredoxin oxidoreductase gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D PAE1041 pyruvate ferredoxin oxidoreductase delta subunit (porD) K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D PAE3276 2-ketoacid ferredoxin oxidoreductase delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D PAE2423 phosphoenolpyruvate synthase (pyruvate,water dikinase) K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D PAE3383 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D PAE3416 conserved hypothetical protein K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D PAE2370 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D PAE2132 fumarate hydratase class I alpha subunit K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2] D PAE2131 fumarate hydratase class I beta subunit K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2] D PAE2743 fumarate hydratase class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D PAE0716 succinate dehydrogenase flavoprotein subunit (sdhA) K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D PAE0717 succinate dehydrogenase iron-sulfur subunit (sdhB) K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D PAE0718 succinate dehydrogenase cytochrome b subunit (sdhC) K00241 sdhC; succinate dehydrogenase cytochrome b subunit D PAE0719 succinate dehydrogenase subunit D (sdhD) K18860 sdhD; succinate dehydrogenase subunit D D PAE2313 succinyl-CoA synthetase alpha subunit (sucD) K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D PAE2312 succinyl-CoA synthetase beta subunit (sucC) K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D PAE2474 acetyl-coenzyme A synthetase K14467 4hbl; 4-hydroxybutyrate---CoA ligase (AMP-forming) [EC:6.2.1.40] D PAE2693 4-hydroxyphenylacetate-3-hydroxylase, conjectural K14534 abfD; 4-hydroxybutyryl-CoA dehydratase / vinylacetyl-CoA-Delta-isomerase [EC:4.2.1.120 5.3.3.3] D PAE1383 3-hydroxyacyl-CoA dehydrogenase and enoyl-CoA hydratase K15016 K15016; enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase [EC:4.2.1.17 1.1.1.35] D PAE1220 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE1377 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2488 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2486 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2183 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2471 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE0939 2-oxoacid ferredoxin oxidoreductase alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D PAE1559 2-oxoacid ferredoxin oxidoreductase alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D PAE2736 2-oxoacid ferredoxin oxidoreductase alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D PAE0938 2-oxoacid ferredoxin oxidoreductase beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D PAE1558 2-oxoacid ferredoxin oxidoreductase beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D PAE2737 2-oxoacid ferredoxin oxidoreductase beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D PAE1651 isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D PAE1499 aconitate hydratase K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D PAE1921 alcohol dehydrogenase (Zinc) K15020 K15020; acryloyl-coenzyme A reductase [EC:1.3.1.84] D PAE0220 methylenetetrahydrofolate dehydrogenase (folD) K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D PAE2481 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PAE2865 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PAE2867 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] C 00680 Methane metabolism [PATH:pai00680] D PAE2662 formate dehydrogenase alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D PAE2661 formate dehydrogenase beta subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit D PAE2660 hypothetical protein K00127 fdoI; formate dehydrogenase subunit gamma D PAE0798 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D PAE1309 conserved hypothetical protein K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D PAE0812 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D PAE3416 conserved hypothetical protein K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D PAE2370 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D PAE0944 conserved hypothetical protein K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11] D PAE1489 conserved protein with sugar isomerase (SIS) domain K08094 hxlB; 6-phospho-3-hexuloisomerase [EC:5.3.1.27] D PAE1679 D-arabino 3-hexulose 6-phosphate formaldehyde lyase, conjectural K08093 hxlA; 3-hexulose-6-phosphate synthase [EC:4.1.2.43] D PAE2481 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PAE2865 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PAE2867 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PAE1042 pyruvate ferredoxin oxidoreductase alpha subunit (porA) K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D PAE3275 2-ketoacid ferredoxin oxidoreductase alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D PAE1043 pyruvate ferredoxin oxidoreductase beta subunit (porB) K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D PAE3274 2-ketoacid ferredoxin oxidoreductase beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D PAE1040 pyruvate ferredoxin oxidoreductase gamma subunit (porG) K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D PAE3279 2-ketoacid ferredoxin oxidoreductase gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D PAE1041 pyruvate ferredoxin oxidoreductase delta subunit (porD) K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D PAE3276 2-ketoacid ferredoxin oxidoreductase delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D PAE2423 phosphoenolpyruvate synthase (pyruvate,water dikinase) K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D PAE2326 phosphonopyruvate decarboxylase, conjectural K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D PAE3320 D-3-phosphoglycerate dehydrogenase (serA) K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D PAE2017 phosphoserine phosphatase (serB) K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 00910 Nitrogen metabolism [PATH:pai00910] D PAE3611 nitrate reductase alpha subunit (narG) K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-] D PAE3612 nitrate reductase beta subunit (narH) K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-] D PAE2577 ferredoxin-nitrite reductase K00366 nirA; ferredoxin-nitrite reductase [EC:1.7.7.1] D PAE3603 nitric oxide reductase, cytochrome b subunit K04561 norB; nitric oxide reductase subunit B [EC:1.7.2.5] D PAE1996 glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D PAE3438 glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D PAE3442 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAE2556 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAE3227 glutamate synthase small subunit gltD K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D PAE1552 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] D PAE3678 carbonic anhydrase part 1, authentic frameshift K01673 cynT; carbonic anhydrase [EC:4.2.1.1] C 00920 Sulfur metabolism [PATH:pai00920] D PAE2609 sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] D PAE2563 adenylylsulfate reductase alpha subunit part 1, authentic frameshift K00394 aprA; adenylylsulfate reductase, subunit A [EC:1.8.99.2] D PAE2564 adenylylsulfate reductase alpha subunit part 2, authentic frameshift K00394 aprA; adenylylsulfate reductase, subunit A [EC:1.8.99.2] D PAE2561 adenylylsulfate reductase beta subunit part 1, authentic frameshift K00395 aprB; adenylylsulfate reductase, subunit B [EC:1.8.99.2] D PAE2562 adenylylsulfate reductase beta subunit part 2, authentic frameshift K00395 aprB; adenylylsulfate reductase, subunit B [EC:1.8.99.2] D PAE2575 phosphoadenosine phosphosulfate reductase (PAPS reductase) K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10] D PAE1989 conserved hypothetical protein K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10] D PAE2572 sulfite reductase alpha subunit K11180 dsrA; dissimilatory sulfite reductase alpha subunit [EC:1.8.1.22] D PAE2596 sulfite reductase alpha subunit K11180 dsrA; dissimilatory sulfite reductase alpha subunit [EC:1.8.1.22] D PAE2571 sulfite reductase beta subunit K11181 dsrB; dissimilatory sulfite reductase beta subunit [EC:1.8.1.22] D PAE2597 sulfite reductase beta subunit K11181 dsrB; dissimilatory sulfite reductase beta subunit [EC:1.8.1.22] D PAE2618 flavoprotein reductase, conjectural K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4] D PAE2834 conserved hypothetical protein K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4] D PAE2733 thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D PAE2420 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D PAE2730 selenium binding protein, probable K17285 SELENBP1; methanethiol oxidase [EC:1.8.3.4] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:pai00061] D PAE0797 short chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PAE2832 short chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PAE2089 short chain dehydrogenase family K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PAE1379 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D PAE2466 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:pai00071] D PAE1220 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE1377 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2488 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2486 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2183 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2471 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE3656 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D PAE1379 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D PAE2466 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D PAE2931 alcohol dehydrogenase (Zinc) K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D PAE2051 alcohol dehydrogenase (Zinc) K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D PAE2480 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00073 Cutin, suberine and wax biosynthesis C 00074 Mycolic acid biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:pai00561] D PAE1309 conserved hypothetical protein K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D PAE2480 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00564 Glycerophospholipid metabolism [PATH:pai00564] D PAE1058 glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D PAE1685 glycerol dehydrogenase (gldA) K00096 araM; glycerol-1-phosphate dehydrogenase [NAD(P)+] [EC:1.1.1.261] D PAE3045 pcrB homolog K17104 E2.5.1.41; phosphoglycerol geranylgeranyltransferase [EC:2.5.1.41] D PAE1784 conserved hypothetical protein K17105 E2.5.1.42; geranylgeranylglycerol-phosphate geranylgeranyltransferase [EC:2.5.1.42] D PAE0660 conserved hypothetical protein K19664 carS; CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase [EC:2.7.7.67] C 00565 Ether lipid metabolism C 00600 Sphingolipid metabolism C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism [PATH:pai00592] D PAE3656 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01040 Biosynthesis of unsaturated fatty acids B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:pai00230] D PAE0563 ADP ribose hydrolase, putative (mutT/nudix family protein) K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D PAE2980 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D PAE0218 amidophosphoribosyltransferase (purF) K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D PAE0226 amidophosphoribosyltransferase (purF) K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D PAE0216 phosphoribosylglycinamide synthetase (GARS) (purD) K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D PAE0219 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D PAE0225 phosphoribosylformylglycinamidine synthase II (FGAM synthase II) (purL) K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3] D PAE0224 conserved hypothetical protein K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3] D PAE0222 phosphoribosylformylglycinamidine synthase I (FGAM synthase I) (purQ) K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D PAE0221 phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (purM) K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D PAE0232 phosphoribosylaminoimidazole carboxylase ATPase subunit (AIRC) (purK) K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] D PAE0250 phosphoribosylaminoimidazole carboxylase catalytic subunit (AIRC) (purE) K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D PAE0215 phosphoribosylaminoimidazole-succinocarboxamide synthase (purC) K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D PAE0972 adenylosuccinate lyase (purB) K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D PAE0604 conserved hypothetical protein K06863 purP; 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase [EC:6.3.4.23] D PAE0608 conserved hypothetical protein K06863 purP; 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase [EC:6.3.4.23] D PAE2908 surE stationary-phase survival protein homolog K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D PAE3523 surE stationary-phase survival protein homolog K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D PAE1561 nucleoside diphosphate kinase (ndk) K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D PAE2808 conserved hypothetical protein K01529 yjjX; inosine/xanthosine triphosphatase [EC:3.6.1.73] D PAE2365 nucleoside-triphosphatase (NTPase) K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D PAE0252 diadenosine 5'5'''-P1,P4-tetraphosphate pyrophosphohydrolase (mutT/nudix family protein) K01518 NUDT2; bis(5'-nucleosidyl)-tetraphosphatase [EC:3.6.1.17] D PAE0714 diadenosine 5'5'''-P1,P4-tetraphosphate pyrophosphohydrolase (mutT/nudix family protein) K01518 NUDT2; bis(5'-nucleosidyl)-tetraphosphatase [EC:3.6.1.17] D PAE3369 GMP synthetase (glutamine-hydrolysing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D PAE3155 ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D PAE0832 adenylate cyclase K05873 cyaB; adenylate cyclase, class 2 [EC:4.6.1.1] D PAE0974 adenylosuccinate synthetase (purA) K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D PAE1681 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D PAE2951 hypothetical protein K00939 adk; adenylate kinase [EC:2.7.4.3] D PAE2972 conserved hypothetical protein K18532 AK6; adenylate kinase [EC:2.7.4.3] D PAE3292 conserved hypothetical protein K06928 NTPCR; nucleoside-triphosphatase [EC:3.6.1.15] D PAE2609 sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] D PAE1552 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] C 00240 Pyrimidine metabolism [PATH:pai00240] D PAE0947 carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D PAE0946 carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D PAE0770 aspartate carbamoyltransferase catalytic subunit (pyrB) K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D PAE3265 aspartate carbamoyltransferase, regulatory subunit (pyrI) K00610 pyrI; aspartate carbamoyltransferase regulatory subunit D PAE0322 dihydroorotase (pyrC) K01465 URA4; dihydroorotase [EC:3.5.2.3] D PAE3263 dihydroorotate dehydrogenase (pyrD) K00226 pyrD; dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1] D PAE3264 orotate phosphoribosyltransferase (pyrE) K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D PAE0768 orotidine-5'-monophosphate decarboxylase (pyrF) K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D PAE3159 uridylate kinase (pyrH) K09903 pyrH; uridylate kinase [EC:2.7.4.22] D PAE1561 nucleoside diphosphate kinase (ndk) K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D PAE0252 diadenosine 5'5'''-P1,P4-tetraphosphate pyrophosphohydrolase (mutT/nudix family protein) K01518 NUDT2; bis(5'-nucleosidyl)-tetraphosphatase [EC:3.6.1.17] D PAE0714 diadenosine 5'5'''-P1,P4-tetraphosphate pyrophosphohydrolase (mutT/nudix family protein) K01518 NUDT2; bis(5'-nucleosidyl)-tetraphosphatase [EC:3.6.1.17] D PAE3518 CTP synthase (pyrG) K01937 pyrG; CTP synthase [EC:6.3.4.2] D PAE3225 cytidylate kinase (cmk) K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D PAE2908 surE stationary-phase survival protein homolog K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D PAE3523 surE stationary-phase survival protein homolog K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D PAE3111 uridine phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3] D PAE1598 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D PAE0794 cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5] D PAE2008 deoxycytidine triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13] D PAE3155 ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D PAE0964 thymidylate kinase (tmk) K00943 tmk; dTMP kinase [EC:2.7.4.9] D PAE2453 thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21] D PAE1837 conserved hypothetical protein K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:pai00250] D PAE2251 aspartate aminotransferase (aspC), conjectural K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D PAE1964 aspartate aminotransferase (aspC), conjectural K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D PAE3083 asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D PAE0376 asparagine synthetase (asnB) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D PAE2884 argininosuccinate synthase (argG) K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D PAE2887 argininosuccinate lyase (argH) K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D PAE0974 adenylosuccinate synthetase (purA) K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D PAE0972 adenylosuccinate lyase (purB) K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D PAE0770 aspartate carbamoyltransferase catalytic subunit (pyrB) K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D PAE3265 aspartate carbamoyltransferase, regulatory subunit (pyrI) K00610 pyrI; aspartate carbamoyltransferase regulatory subunit D PAE1799 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D PAE3227 glutamate synthase small subunit gltD K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D PAE1996 glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D PAE3438 glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D PAE3442 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAE2556 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAE0947 carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D PAE0946 carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D PAE0222 phosphoribosylformylglycinamidine synthase I (FGAM synthase I) (purQ) K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D PAE3025 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D PAE0218 amidophosphoribosyltransferase (purF) K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D PAE0226 amidophosphoribosyltransferase (purF) K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:pai00260] D PAE2877 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D PAE2876 aspartate-semialdehyde dehydrogenase (asd) K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D PAE2868 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D PAE0034 homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39] D PAE2878 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D PAE0798 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D PAE1309 conserved hypothetical protein K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D PAE2326 phosphonopyruvate decarboxylase, conjectural K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D PAE3320 D-3-phosphoglycerate dehydrogenase (serA) K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D PAE2017 phosphoserine phosphatase (serB) K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D PAE2649 pyruvate dehydrogenase E3 (dihydrolipoamide dehydrogenase) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PAE2316 threonine dehydratase (ilvA) K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D PAE2458 tryptophan synthase alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D PAE2462 tryptophan synthase beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D PAE0257 tryptophan synthase beta subunit (trpB), authentic frameshift K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20] C 00270 Cysteine and methionine metabolism [PATH:pai00270] D PAE3655 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D PAE0677 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D PAE1490 conserved hypothetical protein K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D PAE1749 conserved hypothetical protein K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D PAE1203 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D PAE1476 purine nucleoside phosphorylase K00772 mtaP; 5'-methylthioadenosine phosphorylase [EC:2.4.2.28] D PAE3338 purine nucleoside phosphorylase K00772 mtaP; 5'-methylthioadenosine phosphorylase [EC:2.4.2.28] D PAE1659 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D PAE3201 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D PAE3140 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D PAE2877 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D PAE2876 aspartate-semialdehyde dehydrogenase (asd) K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D PAE2868 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D PAE0034 homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39] D PAE2420 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D PAE3297 branched-chain amino acid aminotransferase (ilvE) K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D PAE2251 aspartate aminotransferase (aspC), conjectural K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D PAE1964 aspartate aminotransferase (aspC), conjectural K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D PAE2733 thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D PAE2370 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D PAE3320 D-3-phosphoglycerate dehydrogenase (serA) K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] C 00280 Valine, leucine and isoleucine degradation [PATH:pai00280] D PAE3297 branched-chain amino acid aminotransferase (ilvE) K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D PAE2649 pyruvate dehydrogenase E3 (dihydrolipoamide dehydrogenase) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PAE3656 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D PAE1145 conserved protein (3-hydroxyisobutyrate dehydrogenase family) K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] D PAE2480 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PAE1220 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE1377 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2488 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2486 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2183 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2471 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2185 3-oxoacyl-[acyl-carrier-protein] synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:pai00290] D PAE2316 threonine dehydratase (ilvA) K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D PAE1984 3-isopropylmalate dehydratase large subunit (leuC) K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D PAE1991 3-isopropylmalate dehydratase small subunit (leuD) K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D PAE1995 3-isopropylmalate dehydrogenase (leuB) K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D PAE3300 acetolactate synthase large subunit (ilvB) K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D PAE3299 acetolactate synthase small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6] D PAE3298 acetohydroxy acid isomeroreductase (ilvC) K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D PAE0615 dihydroxy-acid dehydratase (ilvD) K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D PAE3297 branched-chain amino acid aminotransferase (ilvE) K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D PAE1330 2-isopropylmalate synthase (leuA) K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D PAE1986 2-isopropylmalate synthase (leuA) with possible unusual start codon K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D PAE1993 2-isopropylmalate synthase (leuA) with possible unusual start codon K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00300 Lysine biosynthesis [PATH:pai00300] D PAE2868 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D PAE2877 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D PAE2876 aspartate-semialdehyde dehydrogenase (asd) K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D PAE2915 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D PAE2335 possible succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D PAE2315 aminotransferase, class I K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-] D PAE2883 hypothetical protein K05826 lysW; alpha-aminoadipate/glutamate carrier protein LysW D PAE1240 ribosomal protein S6 modification protein (rimK) K05827 lysX; [lysine-biosynthesis-protein LysW]---L-2-aminoadipate ligase [EC:6.3.2.43] D PAE2882 acetylglutamate kinase (argB) K05828 lysZ; [amino group carrier protein]-L-2-aminoadipate/L-glutamate 6-kinase [EC:2.7.2.17 2.7.2.19] D PAE2881 N-acetyl-gamma-glutamyl-phosphate reductase (argC) K05829 lysY; [amino group carrier protein]-6-phospho-L-2-aminoadipate/5-phospho-L-glutamate reductase [EC:1.2.1.103 1.2.1.106] D PAE2515 acetylornithine aminotransferase (argD) K05830 lysJ; [amino-group carrier protein]-gamma-(L-lysyl/L-ornithyl)-L-glutamate aminotransferase [EC:2.6.1.118 2.6.1.124] D PAE2798 peptidase family M20/M25/M40 K05831 lysK; [amino group carrier protein]-lysine/ornithine hydrolase [EC:3.5.1.130 3.5.1.132] C 00310 Lysine degradation [PATH:pai00310] D PAE2649 pyruvate dehydrogenase E3 (dihydrolipoamide dehydrogenase) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PAE1220 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE1377 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2488 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2486 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2183 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2471 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2480 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00220 Arginine biosynthesis [PATH:pai00220] D PAE1985 ornithine carbamoyltransferase (argF) K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D PAE2884 argininosuccinate synthase (argG) K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D PAE2887 argininosuccinate lyase (argH) K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D PAE0222 phosphoribosylformylglycinamidine synthase I (FGAM synthase I) (purQ) K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D PAE3442 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAE2556 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAE0947 carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D PAE0946 carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D PAE1552 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] D PAE1996 glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D PAE3438 glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D PAE2251 aspartate aminotransferase (aspC), conjectural K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D PAE1964 aspartate aminotransferase (aspC), conjectural K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D PAE2883 hypothetical protein K05826 lysW; alpha-aminoadipate/glutamate carrier protein LysW D PAE2882 acetylglutamate kinase (argB) K05828 lysZ; [amino group carrier protein]-L-2-aminoadipate/L-glutamate 6-kinase [EC:2.7.2.17 2.7.2.19] D PAE2881 N-acetyl-gamma-glutamyl-phosphate reductase (argC) K05829 lysY; [amino group carrier protein]-6-phospho-L-2-aminoadipate/5-phospho-L-glutamate reductase [EC:1.2.1.103 1.2.1.106] D PAE2515 acetylornithine aminotransferase (argD) K05830 lysJ; [amino-group carrier protein]-gamma-(L-lysyl/L-ornithyl)-L-glutamate aminotransferase [EC:2.6.1.118 2.6.1.124] D PAE2798 peptidase family M20/M25/M40 K05831 lysK; [amino group carrier protein]-lysine/ornithine hydrolase [EC:3.5.1.130 3.5.1.132] C 00330 Arginine and proline metabolism [PATH:pai00330] D PAE2030 N-methylhydantoinase A (hyuA) K01473 hyuA; N-methylhydantoinase A [EC:3.5.2.14] D PAE2028 N-methylhydantoinase B (hyuB) K01474 hyuB; N-methylhydantoinase B [EC:3.5.2.14] D PAE2260 agmatinase (speB) K01480 speB; agmatinase [EC:3.5.3.11] D PAE1203 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D PAE1490 conserved hypothetical protein K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D PAE1749 conserved hypothetical protein K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D PAE2480 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PAE1917 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D PAE2251 aspartate aminotransferase (aspC), conjectural K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D PAE1964 aspartate aminotransferase (aspC), conjectural K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D PAE2095 conserved within P. aerophilum K17851 dpd; D-proline dehydrogenase [EC:1.5.99.13] C 00340 Histidine metabolism [PATH:pai00340] D PAE0961 ATP phosphoribosyltransferase (hisG) K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17] D PAE0986 phosphoribosyl-ATP pyrophosphohydrolase K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31] D PAE0957 phosphoribosyl-AMP cyclohydrolase K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19] D PAE0991 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (hisA) K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] D PAE0956 amidotransferase (hisH) K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D PAE0989 histidine biosynthesis protein (hisF,cyclase) K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D PAE0990 imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] D PAE0918 histidinol-phosphate aminotransferase (hisC) K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D PAE0958 histidinol-phosphate aminotransferase (hisC) K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D PAE0988 histidinol dehydrogenase (hisD) K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] D PAE2480 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00350 Tyrosine metabolism [PATH:pai00350] D PAE2251 aspartate aminotransferase (aspC), conjectural K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D PAE1964 aspartate aminotransferase (aspC), conjectural K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D PAE0918 histidinol-phosphate aminotransferase (hisC) K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D PAE0958 histidinol-phosphate aminotransferase (hisC) K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D PAE2931 alcohol dehydrogenase (Zinc) K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D PAE2051 alcohol dehydrogenase (Zinc) K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] C 00360 Phenylalanine metabolism [PATH:pai00360] D PAE2251 aspartate aminotransferase (aspC), conjectural K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D PAE1964 aspartate aminotransferase (aspC), conjectural K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D PAE0918 histidinol-phosphate aminotransferase (hisC) K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D PAE0958 histidinol-phosphate aminotransferase (hisC) K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] C 00380 Tryptophan metabolism [PATH:pai00380] D PAE2649 pyruvate dehydrogenase E3 (dihydrolipoamide dehydrogenase) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PAE1220 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE1377 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2488 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2486 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2183 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2471 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2480 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:pai00400] D PAE1932 phospho-2-dehydro-3-deoxyheptonate aldolase K03856 AROA2; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D PAE1926 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] D PAE1960 3-dehydroquinate dehydratase (aroD) / possible chorismate mutase (multidomain protein) K03785 aroD; 3-dehydroquinate dehydratase I [EC:4.2.1.10] D PAE1967 conserved hypothetical protein K00891 aroK; shikimate kinase [EC:2.7.1.71] D PAE1924 3-phosphoshikimate 1-carboxyvinyltransferase (aroA) K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D PAE1912 chorismate synthase (aroC) K01736 aroC; chorismate synthase [EC:4.2.3.5] D PAE2460 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D PAE2459 anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D PAE2461 anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] D PAE2499 phosphoribosyl anthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24] D PAE0570 indole-3-glycerol-phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48] D PAE2458 tryptophan synthase alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D PAE2462 tryptophan synthase beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D PAE0257 tryptophan synthase beta subunit (trpB), authentic frameshift K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D PAE1941 chorismate mutase, conjectural K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12] D PAE0893 chorismate mutase/prephenate dehydratase (P-protein) K04518 pheA2; prephenate dehydratase [EC:4.2.1.51] D PAE2251 aspartate aminotransferase (aspC), conjectural K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D PAE1964 aspartate aminotransferase (aspC), conjectural K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D PAE0918 histidinol-phosphate aminotransferase (hisC) K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D PAE0958 histidinol-phosphate aminotransferase (hisC) K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism [PATH:pai00410] D PAE1799 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D PAE2480 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PAE3406 conserved hypothetical protein K09722 K09722; 4-phosphopantoate---beta-alanine ligase [EC:6.3.2.36] C 00430 Taurine and hypotaurine metabolism D PAE3371 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] C 00440 Phosphonate and phosphinate metabolism C 00450 Selenocompound metabolism [PATH:pai00450] D PAE2420 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D PAE3655 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D PAE1725 thioredoxin reductase (trxB) K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D PAE2744 thioredoxin reductase (trxB) K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D PAE2609 sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] D PAE2940 methionyl-tRNA synthetase alpha subunit K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:pai00460] D PAE1736 beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] D PAE3371 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D PAE3083 asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D PAE0798 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:pai00470] D PAE0222 phosphoribosylformylglycinamidine synthase I (FGAM synthase I) (purQ) K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D PAE2095 conserved within P. aerophilum K17851 dpd; D-proline dehydrogenase [EC:1.5.99.13] C 00480 Glutathione metabolism [PATH:pai00480] D PAE3371 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D PAE1597 aminopeptidase K01256 pepN; aminopeptidase N [EC:3.4.11.2] D PAE1651 isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D PAE1203 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation C 00540 Lipopolysaccharide biosynthesis C 00542 O-Antigen repeat unit biosynthesis C 00541 O-Antigen nucleotide sugar biosynthesis C 00550 Peptidoglycan biosynthesis C 00552 Teichoic acid biosynthesis [PATH:pai00552] D PAE0576 bacitracin resistence protein K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:pai00730] D PAE0333 thiamine biosynthesis protein (thiC) K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17] D PAE2535 phosphomethylpyrimidine kinase K21219 thiDN; hydroxymethylpyrimidine kinase / phosphomethylpyrimidine kinase / thiamine-phosphate diphosphorylase [EC:2.7.1.49 2.7.4.7 2.5.1.3] D PAE3421 thiamine biosynthesis protein (thiI), probable K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D PAE0175 thiamine biosynthetic enzyme (thi1) K22699 thi4; sulfide-dependent adenosine diphosphate thiazole synthase [EC:2.4.2.59] D PAE1022 thiamine-monophosphate kinase part 2, authentic frameshift K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16] D PAE1024 thiamine-monophosphate kinase part 1, authentic frameshift K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16] D PAE3292 conserved hypothetical protein K06928 NTPCR; nucleoside-triphosphatase [EC:3.6.1.15] D PAE1681 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D PAE2951 hypothetical protein K00939 adk; adenylate kinase [EC:2.7.4.3] D PAE0170 conserved protein (tenA homolog) K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] C 00740 Riboflavin metabolism [PATH:pai00740] D PAE2984 conserved hypothetical protein K08096 gch3; GTP cyclohydrolase IIa [EC:3.5.4.29] D PAE2985 riboflavin specific deaminase, putative K14654 RIB7; 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase [EC:1.1.1.302] D PAE2986 GTP cyclohydrolase II K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12] D PAE3296 riboflavin synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D PAE2021 conserved hypothetical protein K00793 ribE; riboflavin synthase [EC:2.5.1.9] D PAE2157 conserved hypothetical protein K07732 rfk; riboflavin kinase, archaea type [EC:2.7.1.161] D PAE0683 cytidyltransferase K14656 ribL; FAD synthetase [EC:2.7.7.2] D PAE0563 ADP ribose hydrolase, putative (mutT/nudix family protein) K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D PAE1481 phenylacrylic acid decarboxylase homolog K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00750 Vitamin B6 metabolism [PATH:pai00750] D PAE2878 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D PAE2819 stress induced protein, conjectural K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6] D PAE2820 conserved hypothetical protein K08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6] C 00760 Nicotinate and nicotinamide metabolism [PATH:pai00760] D PAE3115 quinolinate synthetase A K03517 nadA; quinolinate synthase [EC:2.5.1.72] D PAE3114 nicotinate-nucleotide pyrophosphorylase AND conserved protein K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] D PAE2990 conserved hypothetical protein K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21] D PAE2908 surE stationary-phase survival protein homolog K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D PAE3523 surE stationary-phase survival protein homolog K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D PAE1438 cytidylyltransferase K00952 nadM; nicotinamide-nucleotide adenylyltransferase [EC:2.7.7.1] D PAE2259 conserved protein (possible cytidylyltransferase) K00952 nadM; nicotinamide-nucleotide adenylyltransferase [EC:2.7.7.1] D PAE1219 NH(3)-dependent NAD(+) synthetase K01916 nadE; NAD+ synthase [EC:6.3.1.5] D PAE3500 conserved hypothetical protein K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313] D PAE2959 conserved hypothetical protein K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313] D PAE0624 conserved hypothetical protein K00858 ppnK; NAD+ kinase [EC:2.7.1.23] D PAE3116 conserved hypothetical protein K00858 ppnK; NAD+ kinase [EC:2.7.1.23] C 00770 Pantothenate and CoA biosynthesis [PATH:pai00770] D PAE3300 acetolactate synthase large subunit (ilvB) K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D PAE3299 acetolactate synthase small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6] D PAE3298 acetohydroxy acid isomeroreductase (ilvC) K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D PAE0615 dihydroxy-acid dehydratase (ilvD) K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D PAE3410 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D PAE3409 2-dehydropantoate 2-reductase (ketopantoate reductase) K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D PAE3407 conserved hypothetical protein K06982 pok; pantoate kinase [EC:2.7.1.169] D PAE3406 conserved hypothetical protein K09722 K09722; 4-phosphopantoate---beta-alanine ligase [EC:6.3.2.36] D PAE1204 pantothenate metabolism flavoprotein (dfp) K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D PAE0887 conserved protein (possible cytidylyltransferase) K02201 E2.7.7.3B; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D PAE3284 conserved hypothetical protein K09735 dpck; GTP-dependent dephospho-CoA kinase [EC:2.7.1.237] D PAE3297 branched-chain amino acid aminotransferase (ilvE) K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D PAE2480 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00780 Biotin metabolism [PATH:pai00780] D PAE0797 short chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PAE2832 short chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PAE2089 short chain dehydrogenase family K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] C 00785 Lipoic acid metabolism [PATH:pai00785] D PAE2651 lipoate protein ligase B K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181] D PAE2643 lipoic acid synthetase K03644 lipA; lipoyl synthase [EC:2.8.1.8] D PAE2649 pyruvate dehydrogenase E3 (dihydrolipoamide dehydrogenase) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PAE2644 pyruvate dehydrogenase E1 alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D PAE2646 pyruvate dehydrogenase E1 beta subunit K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D PAE2648 pyruvate dehydrogenase E2 (dihydrolipoamide acetyltransferase) K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] C 00790 Folate biosynthesis [PATH:pai00790] D PAE1588 GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D PAE2937 dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D PAE2713 4a-hydroxytetrahydrobiopterin dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D PAE0010 coenzyme PQQ synthesis protein, conjectural K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D PAE2074 conserved hypothetical protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D PAE2328 conserved hypothetical protein K07142 mptE; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D PAE1703 hypothetical protein K06897 K06897; 7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase [EC:2.5.1.105] D PAE0814 molybdenum cofactor biosynthesis protein (moaA) K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D PAE0799 molybdenum cofactor biosynthesis protein (moaC) K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D PAE0727 molybdenum cofactor biosynthesis protein D/E K21142 moaX; MoaE-MoaD fusion protein [EC:2.8.1.12] D PAE0969 molybdenum cofactor biosynthesis protein (moaB) K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75] D PAE3466 molybdenum cofactor biosynthesis protein (moaA) K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D PAE3465 molybdenum cofactor biosynthesis protein (moaA) K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D PAE3048 molybdenum cofactor biosynthesis protein (moaA) K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D PAE1934 conserved protein K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76] D PAE3453 molybdopterin-guanine dinucleotide biosynthesis protein A K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77] C 00670 One carbon pool by folate [PATH:pai00670] D PAE0220 methylenetetrahydrofolate dehydrogenase (folD) K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D PAE0798 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D PAE0219 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D PAE1837 conserved hypothetical protein K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] D PAE2536 conserved hypothetical protein K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] D PAE0677 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D PAE3140 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D PAE2649 pyruvate dehydrogenase E3 (dihydrolipoamide dehydrogenase) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:pai00860] D PAE2969 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D PAE0601 glutamyl tRNA reductase (hemA) K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70] D PAE0594 glutamate-1-semialdehyde aminotransferase (hemL) K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D PAE0583 porphobilinogen synthase (delta-aminolevulinic acid dehydratase) (hemB) K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D PAE0580 porphobilinogen deaminase (hemC) K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D PAE0589 hypothetical protein K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75] D PAE2593 uroporphyrinogen-III synthase (hemD), conjectural K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75] D PAE2594 uroporphyrinogen-III synthase (hemD), conjectural K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75] D PAE0590 uroporphyrin-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107] D PAE2573 uroporphyrin-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107] D PAE3601 uroporphyrin-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107] D PAE0585 siroheme synthesis protein, conjectural K24866 sirC; precorrin-2 dehydrogenase [EC:1.3.1.76] D PAE0579 metallo cofactor biosynthesis protein K22226 ahbC; Fe-coproporphyrin III synthase D PAE0596 metallo cofactor biosynthesis protein K22227 ahbD; AdoMet-dependent heme synthase [EC:1.3.98.6] D PAE1333 cytochrome C oxidase assembly factor K02257 COX10; heme o synthase [EC:2.5.1.141] D PAE3597 cytochrome C oxidase assembly factor K02257 COX10; heme o synthase [EC:2.5.1.141] D PAE0348 cobalamin biosynthesis precorrin-3 methylase (cbiF) K03394 cobI-cbiL; precorrin-2/cobalt-factor-2 C20-methyltransferase [EC:2.1.1.130 2.1.1.151] D PAE0344 cobalamin biosynthesis precorrin-3 methylase (cbiF) K05934 cobJ; precorrin-3B C17-methyltransferase / cobalt-factor III methyltransferase [EC:2.1.1.131 2.1.1.272] D PAE0349 cobalamin biosynthesis precorrin-3 methylase (cbiF) K05936 cobM; precorrin-4/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271] D PAE0339 cobalamin biosynthesis protein G (cbiG) K02189 cbiG; cobalt-precorrin 5A hydrolase [EC:3.7.1.12] D PAE0346 cobalamin biosynthesis protein D (cbiD) K02188 cbiD; cobalt-precorrin-5B (C1)-methyltransferase [EC:2.1.1.195] D PAE0347 cobalamin biosynthesis precorrin-8W decarboxylase (cbiT) K02191 cbiT; cobalt-precorrin-6B (C15)-methyltransferase [EC:2.1.1.196] D PAE0340 cobalamin biosynthesis precorrin-6Y methylase (cbiE) K03399 cbiE; cobalt-precorrin-7 (C5)-methyltransferase [EC:2.1.1.289] D PAE0343 cobalamin biosynthesis putative precorrin-8X methylmutase (precorrin isomerase) K06042 cobH-cbiC; precorrin-8X/cobalt-precorrin-8 methylmutase [EC:5.4.99.61 5.4.99.60] D PAE2587 cobyrinic acid a,c-diamide synthase (cbiA) part 2, authentic frameshift K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11] D PAE0370 cob(I)alamin adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D PAE0381 cobalamin biosynthesis protein B (cbiB) K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10] D PAE0369 paREP1 K19712 cobY; adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.7.62] D PAE0379 cobalamin (5'-phosphate) synthase (cobS) K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26] D PAE2701 conserved hypothetical protein K03594 bfr; bacterioferritin [EC:1.16.3.1] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:pai00130] D PAE2375 4-hydroxybenzoate octaprenyltransferase (ubiA) K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D PAE1844 conserved hypothetical protein K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98] D PAE1481 phenylacrylic acid decarboxylase homolog K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D PAE2338 ubiquinone/menaquinone biosynthesis methyltransferase (ubiE), conjectural K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201] D PAE1163 conserved hypothetical protein K18285 mqnE; aminodeoxyfutalosine synthase [EC:2.5.1.120] D PAE1164 conserved hypothetical protein K11784 mqnC; cyclic dehypoxanthinyl futalosine synthase [EC:1.21.98.1] D PAE1369 conserved hypothetical protein K11785 mqnD; 5,8-dihydroxy-2-naphthoate synthase [EC:4.1.99.29] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:pai00900] D PAE1220 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE1377 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2488 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2486 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2183 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2471 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2185 3-oxoacyl-[acyl-carrier-protein] synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] D PAE2182 3-hydroxy-3-methylglutaryl-coenzyme A reductase (HMG-CoA reductase) K00021 HMGCR; hydroxymethylglutaryl-CoA reductase (NADPH) [EC:1.1.1.34] D PAE3108 mevalonate kinase K00869 MVK; mevalonate kinase [EC:2.7.1.36] D PAE1012 conserved hypothetical protein K06981 ipk; isopentenyl phosphate kinase [EC:2.7.4.26] D PAE2233 conserved hypothetical protein K25517 acnX1; phosphomecalonate degydratase large subunit [EC:4.2.1.182] D PAE2234 conserved hypothetical protein K09128 acnX2; phosphomecalonate degydratase small subunit [EC:4.2.1.182] D PAE2232 conserved hypothetical protein K25518 E4.1.1.126; anhydromevalonate phosphate decarboxylase [EC:4.1.1.126] D PAE1481 phenylacrylic acid decarboxylase homolog K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D PAE0801 conserved protein (possible oxidoreductase) K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2] D PAE1013 polyprenyl synthetase K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29] D PAE2942 conserved hypothetical protein K15888 uppS; tritrans,polycis-undecaprenyl-diphosphate synthase [geranylgeranyl-diphosphate specific] [EC:2.5.1.89] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation C 00907 Pinene, camphor and geraniol degradation [PATH:pai00907] D PAE3656 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D PAE1927 transketolase (C terminal section) K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D PAE1929 transketolase (N terminal section) K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis D PAE3024 sugar-phosphate nucleotidyl transferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides C 01055 Biosynthesis of vancomycin group antibiotics B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids [PATH:pai00946] D PAE1736 beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis D PAE3124 penicillin amidase K01434 pac; penicillin G amidase [EC:3.5.1.11] C 00332 Carbapenem biosynthesis C 00261 Monobactam biosynthesis [PATH:pai00261] D PAE2609 sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] D PAE2877 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D PAE2876 aspartate-semialdehyde dehydrogenase (asd) K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D PAE2915 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:pai00521] D PAE3437 glucokinase (ROK family protein), conjectural K25026 glk; glucokinase [EC:2.7.1.2] D PAE1761 myo-inositol-1-phosphate synthase, conjectural K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4] D PAE3055 extragenic suppressor protein suhB homolog K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D PAE3024 sugar-phosphate nucleotidyl transferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] C 00524 Neomycin, kanamycin and gentamicin biosynthesis D PAE3437 glucokinase (ROK family protein), conjectural K25026 glk; glucokinase [EC:2.7.1.2] C 00525 Acarbose and validamycin biosynthesis D PAE3024 sugar-phosphate nucleotidyl transferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] C 00401 Novobiocin biosynthesis [PATH:pai00401] D PAE1941 chorismate mutase, conjectural K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12] D PAE2251 aspartate aminotransferase (aspC), conjectural K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D PAE1964 aspartate aminotransferase (aspC), conjectural K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D PAE0918 histidinol-phosphate aminotransferase (hisC) K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D PAE0958 histidinol-phosphate aminotransferase (hisC) K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis D PAE2460 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D PAE2459 anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] C 00333 Prodigiosin biosynthesis D PAE0797 short chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PAE2832 short chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PAE2089 short chain dehydrogenase family K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics C 00999 Biosynthesis of various plant secondary metabolites [PATH:pai00999] D PAE0677 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D PAE1736 beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] C 00997 Biosynthesis of various other secondary metabolites B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation [PATH:pai00362] D PAE3656 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D PAE2685 conserved hypothetical protein K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2] D PAE1220 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE1377 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2488 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2486 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2183 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2471 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00627 Aminobenzoate degradation [PATH:pai00627] D PAE1232 acylphosphatase, putative K01512 acyP; acylphosphatase [EC:3.6.1.7] D PAE1481 phenylacrylic acid decarboxylase homolog K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00364 Fluorobenzoate degradation C 00625 Chloroalkane and chloroalkene degradation [PATH:pai00625] D PAE2931 alcohol dehydrogenase (Zinc) K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D PAE2051 alcohol dehydrogenase (Zinc) K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D PAE2480 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00361 Chlorocyclohexane and chlorobenzene degradation D PAE2685 conserved hypothetical protein K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2] C 00623 Toluene degradation C 00622 Xylene degradation [PATH:pai00622] D PAE2685 conserved hypothetical protein K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2] C 00633 Nitrotoluene degradation [PATH:pai00633] D PAE1042 pyruvate ferredoxin oxidoreductase alpha subunit (porA) K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D PAE3275 2-ketoacid ferredoxin oxidoreductase alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D PAE1043 pyruvate ferredoxin oxidoreductase beta subunit (porB) K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D PAE3274 2-ketoacid ferredoxin oxidoreductase beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D PAE1040 pyruvate ferredoxin oxidoreductase gamma subunit (porG) K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D PAE3279 2-ketoacid ferredoxin oxidoreductase gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D PAE1041 pyruvate ferredoxin oxidoreductase delta subunit (porD) K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D PAE3276 2-ketoacid ferredoxin oxidoreductase delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D PAE2572 sulfite reductase alpha subunit K11180 dsrA; dissimilatory sulfite reductase alpha subunit [EC:1.8.1.22] D PAE2596 sulfite reductase alpha subunit K11180 dsrA; dissimilatory sulfite reductase alpha subunit [EC:1.8.1.22] D PAE2571 sulfite reductase beta subunit K11181 dsrB; dissimilatory sulfite reductase beta subunit [EC:1.8.1.22] D PAE2597 sulfite reductase beta subunit K11181 dsrB; dissimilatory sulfite reductase beta subunit [EC:1.8.1.22] C 00642 Ethylbenzene degradation D PAE3656 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 00643 Styrene degradation [PATH:pai00643] D PAE2685 conserved hypothetical protein K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2] D PAE2827 coA transferase, putative K01026 pct; propionate CoA-transferase [EC:2.8.3.1] C 00791 Atrazine degradation C 00930 Caprolactam degradation C 00363 Bisphenol degradation C 00621 Dioxin degradation C 00626 Naphthalene degradation [PATH:pai00626] D PAE2931 alcohol dehydrogenase (Zinc) K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D PAE2051 alcohol dehydrogenase (Zinc) K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:pai03020] D PAE0665 DNA-directed RNA polymerase subunit B (rpoB) K13798 rpoB; DNA-directed RNA polymerase subunit B [EC:2.7.7.6] D PAE0666 DNA-directed RNA polymerase subunit A' (rpoA1) K03041 rpoA1; DNA-directed RNA polymerase subunit A' [EC:2.7.7.6] D PAE0667 DNA-directed RNA polymerase subunit A'' (rpoA2) K03042 rpoA2; DNA-directed RNA polymerase subunit A" [EC:2.7.7.6] D PAE0671 DNA-directed RNA polymerase subunit D (rpoD) K03047 rpoD; DNA-directed RNA polymerase subunit D [EC:2.7.7.6] D PAE1978 DNA-directed RNA polymerase subunit L (rpoL) K03056 rpoL; DNA-directed RNA polymerase subunit L [EC:2.7.7.6] D PAE3562 DNA-directed RNA polymerase subunit E' (rpoE1) K03049 rpoE1; DNA-directed RNA polymerase subunit E' [EC:2.7.7.6] D PAE3335 conserved hypothetical protein K03051 rpoF; DNA-directed RNA polymerase subunit F [EC:2.7.7.6] D PAE0664 DNA-directed RNA polymerase subunit H (rpoH) K03053 rpoH; DNA-directed RNA polymerase subunit H [EC:2.7.7.6] D PAE3271 DNA-directed RNA polymerase subunit K03055 rpoK; DNA-directed RNA polymerase subunit K [EC:2.7.7.6] D PAE0675a DNA-directed RNA polymerase subunit N (rpoN) K03058 rpoN; DNA-directed RNA polymerase subunit N [EC:2.7.7.6] D PAE2258 DNA-directed RNA polymerase subunit K03059 rpoP; DNA-directed RNA polymerase subunit P [EC:2.7.7.6] C 03022 Basal transcription factors [PATH:pai03022] D PAE1645 transcription initiation factor IIB (TFIIB) K03124 TFIIB; transcription initiation factor TFIIB D PAE3329 transcription initiation factor IIB (TFIIB) K03124 TFIIB; transcription initiation factor TFIIB D PAE2164 transcription initiation factor TFIID (TATA-binding) K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein D PAE0781 conserved hypothetical protein K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha D PAE2991 conserved hypothetical protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:pai03010] D PAE0817 ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D PAE1779 ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D PAE3084 ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D PAE1182 ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D PAE0733 ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D PAE2098 ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D PAE0674 ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D PAE2907 ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D PAE3179 ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D PAE0670 ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D PAE3085 ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D PAE2097 ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D PAE3485 ribosomal protein S13 K02956 RP-S15; small subunit ribosomal protein S15 D PAE1730 ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D PAE1729 ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D PAE3472 ribosomal protein S3 K02984 RP-S3Ae; small subunit ribosomal protein S3Ae D PAE3313 ribosomal protein S4 K02987 RP-S4e; small subunit ribosomal protein S4e D PAE1505 ribosomal protein S6 K02991 RP-S6e; small subunit ribosomal protein S6e D PAE3331 ribosomal protein S8 K02995 RP-S8e; small subunit ribosomal protein S8e D PAE0804 ribosomal protein S17 K02962 RP-S17e; small subunit ribosomal protein S17e D PAE3043 ribosomal protein S19 K02966 RP-S19e; small subunit ribosomal protein S19e D PAE2434 ribosomal protein S24 K02974 RP-S24e; small subunit ribosomal protein S24e D PAE2188 conserved hypothetical protein K02975 RP-S25e; small subunit ribosomal protein S25e D PAE2169 ribosomal protein S26 K02976 RP-S26e; small subunit ribosomal protein S26e D PAE3033 ribosomal protein S27 K02978 RP-S27e; small subunit ribosomal protein S27e D PAE2432 ribosomal protein S27 K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae D PAE3344 ribosomal protein S28 K02979 RP-S28e; small subunit ribosomal protein S28e D PAE2455 ribosomal protein S30 K02983 RP-S30e; small subunit ribosomal protein S30e D PAE3106 ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D PAE0803 ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D PAE1970 ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D PAE3575 ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D PAE2377 ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D PAE3107 acidic ribosomal protein P0 (L10E) K02864 RP-L10; large subunit ribosomal protein L10 D PAE3104 ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D PAE1712 ribosomal protein L12 K02869 RP-L12; large subunit ribosomal protein L12 D PAE0673 ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D PAE3136 ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D PAE3436 ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D PAE2101 ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D PAE1782 ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D PAE1972 ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D PAE3312 ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D PAE1778 ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D PAE1183 ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D PAE1971 ribosomal protein L4 K02930 RP-L4e; large subunit ribosomal protein L4e D PAE3347 ribosomal protein L7 K02936 RP-L7Ae; large subunit ribosomal protein L7Ae D PAE3567 ribosomal protein L10 K02866 RP-L10e; large subunit ribosomal protein L10e D PAE1639 ribosomal protein L13 K02873 RP-L13e; large subunit ribosomal protein L13e D PAE0862 ribosomal protein L14 K02875 RP-L14e; large subunit ribosomal protein L14e D PAE1833 ribosomal protein L15 K02877 RP-L15e; large subunit ribosomal protein L15e D PAE0672 ribosomal protein L18 K02883 RP-L18e; large subunit ribosomal protein L18e D PAE2100 ribosomal protein L19 K02885 RP-L19e; large subunit ribosomal protein L19e D PAE3334 ribosomal protein L21 K02889 RP-L21e; large subunit ribosomal protein L21e D PAE3345 ribosomal protein L24 K02896 RP-L24e; large subunit ribosomal protein L24e D PAE0668 ribosomal protein L30 K02908 RP-L30e; large subunit ribosomal protein L30e D PAE3095 ribosomal protein L31 K02910 RP-L31e; large subunit ribosomal protein L31e D PAE2099 ribosomal protein L32 K02912 RP-L32e; large subunit ribosomal protein L32e D PAE3224 ribosomal protein L34 K02915 RP-L34e; large subunit ribosomal protein L34e D PAE2202 ribosomal protein L37 K02921 RP-L37Ae; large subunit ribosomal protein L37Ae D PAE1714 ribosomal protein L38 K02923 RP-L38e; large subunit ribosomal protein L38e D PAE3255 ribosomal protein L40 K02927 RP-L40e; ubiquitin-large subunit ribosomal protein L40e D PAE3034 ribosomal protein L44 K02929 RP-L44e; large subunit ribosomal protein L44e D PAE3098 ribosomal protein LX K02944 RP-LX; large subunit ribosomal protein LX D PAErR16S small subunit 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D PAErR23S large subunit 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D PAErR5S 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:pai00970] D PAEtR25 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D PAEtR41 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D PAEtR34 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D PAEtR38 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D PAEtR44 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D PAEtR33 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D PAEtR06 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D PAEtR43 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D PAEtR36 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D PAEtR14 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D PAEtR24 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D PAEtR08 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D PAEtR37 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D PAEtR07 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D PAEtR20 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D PAEtR04 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D PAEtR17 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D PAEtR13 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D PAEtR26 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D PAEtR31 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D PAEtR01 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D PAEtR40 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D PAEtR35 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D PAEtR18 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D PAEtR19 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D PAEtR16 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D PAEtR03 tRNA-Val K14237 tRNA-Val; tRNA Val D PAE2969 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D PAE1525 Glu-tRNA(Gln) amidotransferase subunit A (gatA) K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D PAE1003 asparaginase (asnA) K09482 gatD; glutamyl-tRNA(Gln) amidotransferase subunit D [EC:6.3.5.7] D PAE3222 Glu-tRNA(Gln) amidotransferase subunit B (gatB) K03330 gatE; glutamyl-tRNA(Gln) amidotransferase subunit E [EC:6.3.5.7] D PAE3565 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D PAE0703 aspartyl-tRNA synthetase K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23] D PAE2973 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D PAE2557 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D PAE2266 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D PAE1748 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D PAE3158 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D PAE0821 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D PAE2940 methionyl-tRNA synthetase alpha subunit K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D PAE2297 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D PAE1107 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D PAE1617 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D PAE1840 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D PAE3343 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D PAE2165 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D PAE1553 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D PAE1441 phenylalanyl-tRNA synthetase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D PAE1669 phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D PAE0630 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D PAE1931 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D PAE3091 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:pai03060] D PAE3435 preprotein translocase secY subunit K03076 secY; preprotein translocase subunit SecY D PAE3365 signal recognition particle (srp54 family), putative K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D PAE3100 signal recognition particle protein (docking protein), probable K03110 ftsY; fused signal recognition particle receptor D PAE3332 signal recognition particle K03105 SRP19; signal recognition particle subunit SRP19 D PAE1427 arsenical pump-driving ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-] D PAE1546 conserved hypothetical protein K03116 tatA; sec-independent protein translocase protein TatA D PAE1547 membrane protein (mttB family) K03118 tatC; sec-independent protein translocase protein TatC D PAE0264 signal peptidase K13280 SEC11; signal peptidase I [EC:3.4.21.89] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:pai04122] D PAE2733 thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D PAE0814 molybdenum cofactor biosynthesis protein (moaA) K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D PAE2580 conserved hypothetical protein K03636 moaD; sulfur-carrier protein D PAE2135 conserved hypothetical protein K03636 moaD; sulfur-carrier protein D PAE3375 conserved hypothetical protein K03636 moaD; sulfur-carrier protein D PAE2011 conserved hypothetical protein K03636 moaD; sulfur-carrier protein D PAE0727 molybdenum cofactor biosynthesis protein D/E K21142 moaX; MoaE-MoaD fusion protein [EC:2.8.1.12] D PAE1056 thiF/moeB/hesA family protein K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80] D PAE0799 molybdenum cofactor biosynthesis protein (moaC) K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D PAE0969 molybdenum cofactor biosynthesis protein (moaB) K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75] D PAE3421 thiamine biosynthesis protein (thiI), probable K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] C 03050 Proteasome [PATH:pai03050] D PAE2215 proteasome alpha subunit K03432 psmA; proteasome alpha subunit [EC:3.4.25.1] D PAE0807 proteasome beta subunit K03433 psmB; proteasome beta subunit [EC:3.4.25.1] D PAE3595 proteasome, beta subunit K03433 psmB; proteasome beta subunit [EC:3.4.25.1] C 03018 RNA degradation [PATH:pai03018] D PAE1975 conserved protein (RNA polymerase related) K07573 CSL4; exosome complex component CSL4 D PAE2208 conserved hypothetical protein K03679 RRP4; exosome complex component RRP4 D PAE2206 3' exoribonuclease family protein K12589 RRP42; exosome complex component RRP42 D PAE2207 3' exoribonuclease family protein K11600 RRP41; exosome complex component RRP41 D PAE0812 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] B B 09124 Replication and repair C 03030 DNA replication [PATH:pai03030] D PAE2112 conserved protein (toprim domain) K02316 dnaG; DNA primase [EC:2.7.7.101] D PAE1792 hypothetical protein K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D PAE1216 ribonuclease HII (rnhB) K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D PAE2109 DNA-directed DNA polymerase (B3) K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7] D PAE2180 DNA-directed DNA polymerase (B1) K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7] D PAE1113 possible DNA-directed DNA polymerase (B2) K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7] D PAE0901 DNA replication licensing factor (mcm) K10726 mcm; replicative DNA helicase Mcm [EC:5.6.2.3] D PAE3036 DNA primase related protein K02683 priS; DNA primase small subunit [EC:2.7.7.102] D PAE2238 conserved protein (possible primase) K18882 priL; DNA primase large subunit D PAE3038 proliferating-cell nuclear antigen homolog (PCNA) K04802 PCNA; proliferating cell nuclear antigen D PAE0720 proliferating-cell nuclear antigen homolog (PCNA) K04802 PCNA; proliferating cell nuclear antigen D PAE0734 replication factor C small subunit K04801 rfcS; replication factor C small subunit D PAE1646 replication factor C small subunit K04801 rfcS; replication factor C small subunit D PAE0735 replication factor C large subunit K04800 rfcL; replication factor C large subunit D PAE0698 DNA endonuclease rad2 homolog K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D PAE0833 DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] C 03410 Base excision repair [PATH:pai03410] D PAE0880 DNA-(apurinic or apyrimidinic site) lyase (endonuclease III, PaNth) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D PAE3199 U/G & T/G mismatch specific glycosylase (Pa-MIG) K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D PAE3038 proliferating-cell nuclear antigen homolog (PCNA) K04802 PCNA; proliferating cell nuclear antigen D PAE0720 proliferating-cell nuclear antigen homolog (PCNA) K04802 PCNA; proliferating cell nuclear antigen D PAE0698 DNA endonuclease rad2 homolog K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D PAE0833 DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D PAE0651 uracil DNA glycosylase (Pa-UDGa) K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D PAE1327 uracil-DNA glycosylase (Pa-UDGb) K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D PAE3257 DNA-(apurinic or apyrimidinic site) lyase (endonuclease IV) K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D PAE2792 conserved hypothetical protein part 1, authentic frameshift K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] C 03420 Nucleotide excision repair [PATH:pai03420] D PAE2991 conserved hypothetical protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D PAE1735 conserved hypothetical protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] D PAE3038 proliferating-cell nuclear antigen homolog (PCNA) K04802 PCNA; proliferating cell nuclear antigen D PAE0720 proliferating-cell nuclear antigen homolog (PCNA) K04802 PCNA; proliferating cell nuclear antigen D PAE0833 DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] C 03430 Mismatch repair [PATH:pai03430] D PAE2792 conserved hypothetical protein part 1, authentic frameshift K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D PAE3038 proliferating-cell nuclear antigen homolog (PCNA) K04802 PCNA; proliferating cell nuclear antigen D PAE0720 proliferating-cell nuclear antigen homolog (PCNA) K04802 PCNA; proliferating cell nuclear antigen D PAE0833 DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] C 03440 Homologous recombination D PAE2792 conserved hypothetical protein part 1, authentic frameshift K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] C 03450 Non-homologous end-joining D PAE0698 DNA endonuclease rad2 homolog K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 D PAE3563 DNA-directed RNA polymerase subunit E'' (rpoE2) K15171 SUPT4H1; transcription elongation factor SPT4 D PAE3103 transcription antitermination protein nusG, putative K15172 SUPT5H; transcription elongation factor SPT5 C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus and Alphavirus C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus C 03272 Virion - Hepatitis viruses C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:pai02010] D PAE0020 binding protein, putative K05772 tupA; tungstate transport system substrate-binding protein D PAE0022 sulfate transport system, permease protein, putative K05773 tupB; tungstate transport system permease protein D PAE0023 sulfate transport system, ATP-binding protein, putative K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6] D PAE3569 hypothetical protein K15495 wtpA; molybdate/tungstate transport system substrate-binding protein D PAE3570 sulfate ABC transporter, permease protein, putative K15496 wtpB; molybdate/tungstate transport system permease protein D PAE3571 ABC transporter ATP-binding protein, putative K15497 wtpC; molybdate/tungstate transport system ATP-binding protein [EC:7.3.2.5 7.3.2.6] D PAE0061 extracellular solute binding protein, conjectural K02012 afuA; iron(III) transport system substrate-binding protein D PAE0062 molybdenum transport system permease protein, putative K02011 afuB; iron(III) transport system permease protein D PAE0063 transporter ATP-binding protein, putative K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D PAE0331 thiamine-binding periplasmic protein K02064 thiB; thiamine transport system substrate-binding protein D PAE0329 conserved hypothetical protein K02063 thiP; thiamine transport system permease protein D PAE0328 thiamine transport ATP-binding protein K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15] D PAE0953 putrescine/spermidine binding protein, conjectural K11069 potD; spermidine/putrescine transport system substrate-binding protein D PAE2893 spermidine/putrescine transport permease protein K11070 potC; spermidine/putrescine transport system permease protein D PAE2891 spermidine/putrescine transport permease protein K11071 potB; spermidine/putrescine transport system permease protein D PAE2890 spermidine/putrescine transport ATP-binding protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D PAE1321 multiple sugar-binding transport ATP-binding K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D PAE3455 maltose ABC transporter, maltose binding protein K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein D PAE3456 maltose ABC transporter, permease protein K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D PAE3457 maltose ABC transporter, permease protein K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D PAE3121 sugar binding protein K07335 bmpA; basic membrane protein A and related proteins D PAE3414 conserved hypothetical protein K07335 bmpA; basic membrane protein A and related proteins D PAE3119 ribose ABC transporter, permease protein K23535 nupB; general nucleoside transport system permease protein D PAE3412 ribose ABC transporter, permease protein K23535 nupB; general nucleoside transport system permease protein D PAE3118 ribose ABC transporter, permease protein K23536 nupC; general nucleoside transport system permease protein D PAE3411 sugar transport permease protein K23536 nupC; general nucleoside transport system permease protein D PAE3413 ribose ABC transport system ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein D PAE3120 ribose ABC transport system ATP-binding K23537 nupA; general nucleoside transport system ATP-binding protein D PAE0689 multiple sugar binding protein K10196 glcS; glucose/arabinose transport system substrate-binding protein D PAE0688 multiple sugar transport permease protein K10197 glcT; glucose/arabinose transport system permease protein D PAE0686 multiple sugar transport permease protein K10198 glcU; glucose/arabinose transport system permease protein D PAE1397 phosphate-binding periplasmic protein, putative K02040 pstS; phosphate transport system substrate-binding protein D PAE1396 phosphate ABC transporter, permease protein K02037 pstC; phosphate transport system permease protein D PAE1395 phosphate ABC transporter, permease protein K02038 pstA; phosphate transport system permease protein D PAE1393 phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D PAE2700 hypothetical protein K02044 phnD; phosphonate transport system substrate-binding protein D PAE2697 transport protein, putative K02042 phnE; phosphonate transport system permease protein D PAE2699 iron (III) ABC transporter ATP-binding protein, putative K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D PAE2082 branched-chain amino acid binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D PAE3353 branched-chain amino acid binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D PAE3268 branched-chain amino acid binding protein, putative K01999 livK; branched-chain amino acid transport system substrate-binding protein D PAE1392 branched-chain amino acid binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D PAE1391 branched-chain amino acid transport permease protein K01997 livH; branched-chain amino acid transport system permease protein D PAE2083 branched-chain amino acid transport permease protein K01997 livH; branched-chain amino acid transport system permease protein D PAE3350 branched-chain amino acid transport permease protein K01997 livH; branched-chain amino acid transport system permease protein D PAE2084 branched-chain amino acid transport permease protein K01998 livM; branched-chain amino acid transport system permease protein D PAE3348 branched-chain amino acid transport permease protein K01998 livM; branched-chain amino acid transport system permease protein D PAE1390 branched-chain amino acid transport permease protein K01998 livM; branched-chain amino acid transport system permease protein D PAE1389 branched-chain amino acid transport ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D PAE2081 branched-chain amino acid transport ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D PAE2465 branched-chain amino acid ABC transporter, ATP-binding protein, putative K01995 livG; branched-chain amino acid transport system ATP-binding protein D PAE3354 branched-chain amino acid transport ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D PAE1363 branched-chain amino acid ABC transporter, ATP-binding protein, putative K01995 livG; branched-chain amino acid transport system ATP-binding protein D PAE1388 branched-chain amino acid transport ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D PAE2080 branched-chain amino acid transport ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D PAE3269 branched-chain amino acid ABC transporter, ATP-binding protein, putative K01996 livF; branched-chain amino acid transport system ATP-binding protein C 02060 Phosphotransferase system (PTS) C 03070 Bacterial secretion system [PATH:pai03070] D PAE3435 preprotein translocase secY subunit K03076 secY; preprotein translocase subunit SecY D PAE3100 signal recognition particle protein (docking protein), probable K03110 ftsY; fused signal recognition particle receptor D PAE3365 signal recognition particle (srp54 family), putative K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D PAE1546 conserved hypothetical protein K03116 tatA; sec-independent protein translocase protein TatA D PAE1547 membrane protein (mttB family) K03118 tatC; sec-independent protein translocase protein TatC B B 09132 Signal transduction C 02020 Two-component system [PATH:pai02020] D PAE1397 phosphate-binding periplasmic protein, putative K02040 pstS; phosphate transport system substrate-binding protein D PAE1688 malate oxidoreductase (mae) K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D PAE3611 nitrate reductase alpha subunit (narG) K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-] D PAE3612 nitrate reductase beta subunit (narH) K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-] D PAE3610 nitrate reductase delta subunit (narJ) K00373 narJ; nitrate reductase molybdenum cofactor assembly chaperone NarJ/NarW D PAE3442 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAE2556 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAE1220 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE1377 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2488 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2486 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2183 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2471 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:pai02024] D PAE2460 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D PAE2459 anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D PAE2082 branched-chain amino acid binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D PAE3353 branched-chain amino acid binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D PAE3268 branched-chain amino acid binding protein, putative K01999 livK; branched-chain amino acid transport system substrate-binding protein D PAE1392 branched-chain amino acid binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D PAE1391 branched-chain amino acid transport permease protein K01997 livH; branched-chain amino acid transport system permease protein D PAE2083 branched-chain amino acid transport permease protein K01997 livH; branched-chain amino acid transport system permease protein D PAE3350 branched-chain amino acid transport permease protein K01997 livH; branched-chain amino acid transport system permease protein D PAE2084 branched-chain amino acid transport permease protein K01998 livM; branched-chain amino acid transport system permease protein D PAE3348 branched-chain amino acid transport permease protein K01998 livM; branched-chain amino acid transport system permease protein D PAE1390 branched-chain amino acid transport permease protein K01998 livM; branched-chain amino acid transport system permease protein D PAE1389 branched-chain amino acid transport ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D PAE2081 branched-chain amino acid transport ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D PAE2465 branched-chain amino acid ABC transporter, ATP-binding protein, putative K01995 livG; branched-chain amino acid transport system ATP-binding protein D PAE3354 branched-chain amino acid transport ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D PAE1363 branched-chain amino acid ABC transporter, ATP-binding protein, putative K01995 livG; branched-chain amino acid transport system ATP-binding protein D PAE1388 branched-chain amino acid transport ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D PAE2080 branched-chain amino acid transport ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D PAE3269 branched-chain amino acid ABC transporter, ATP-binding protein, putative K01996 livF; branched-chain amino acid transport system ATP-binding protein D PAE1379 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D PAE2466 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D PAE2391 dipeptide binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D PAE3088 oligopeptide binding protein, putative K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D PAE1300 dipeptide binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D PAE1299 dipeptide ABC transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D PAE2393 dipeptide transport permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D PAE3087 oligopeptide ABC transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D PAE1298 dipeptide ABC transporter, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D PAE2392 dipeptide transport permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D PAE3086 oligopeptide ABC transporter, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D PAE1297 dipeptide transport ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D PAE3317 oligopeptide transport ATP-binding protein, putative K02031 ddpD; peptide/nickel transport system ATP-binding protein D PAE1296 dipeptide transport ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D PAE3316 oligopeptide transport ATP-binding protein, putative K02032 ddpF; peptide/nickel transport system ATP-binding protein D PAE3435 preprotein translocase secY subunit K03076 secY; preprotein translocase subunit SecY D PAE3100 signal recognition particle protein (docking protein), probable K03110 ftsY; fused signal recognition particle receptor D PAE3365 signal recognition particle (srp54 family), putative K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis C 02040 Flagellar assembly C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D PAE0812 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04981 Folate transport and metabolism [PATH:pai04981] D PAE2536 conserved hypothetical protein K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] D PAE0798 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 04980 Cobalamin transport and metabolism C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance C 01502 Vancomycin resistance C 01503 Cationic antimicrobial peptide (CAMP) resistance B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:pai01000] C 01001 Protein kinases [BR:pai01001] D PAE2192 conserved hypothetical protein K08851 TP53RK; TP53 regulating kinase and related kinases [EC:2.7.11.1] D PAE3474 conserved hypothetical protein K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D PAE0680 conserved hypothetical protein K07179 RIOK2; RIO kinase 2 [EC:2.7.11.1] C 01009 Protein phosphatases and associated proteins [BR:pai01009] D PAE1373 translation initiation factor aIF-2B beta subunit K03238 EIF2S2; translation initiation factor 2 subunit 2 D PAE3140 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D PAE2017 phosphoserine phosphatase (serB) K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 01002 Peptidases and inhibitors [BR:pai01002] D PAE1599 hypothetical protein K07991 flaK; archaeal preflagellin peptidase FlaK [EC:3.4.23.52] D PAE3369 GMP synthetase (glutamine-hydrolysing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D PAE0218 amidophosphoribosyltransferase (purF) K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D PAE0226 amidophosphoribosyltransferase (purF) K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D PAE3025 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D PAE0376 asparagine synthetase (asnB) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D PAE0267 intracellular protease K05520 yhbO; deglycase [EC:3.5.1.124] D PAE0294 P. aerophilum family 322 protein K07052 K07052; CAAX protease family protein D PAE0872 conserved hypothetical protein K07052 K07052; CAAX protease family protein D PAE0966 conserved hypothetical protein K07052 K07052; CAAX protease family protein D PAE1433 P. aerophilum family 322 protein part 1, authentic frameshift K07052 K07052; CAAX protease family protein D PAE1434 P. aerophilum family 322 protein part 2, authentic frameshift K07052 K07052; CAAX protease family protein D PAE1905 P. aerophilum family 322 protein part 2, authentic frameshift K07052 K07052; CAAX protease family protein D PAE2439 conserved within P. aerophilum K07052 K07052; CAAX protease family protein D PAE1597 aminopeptidase K01256 pepN; aminopeptidase N [EC:3.4.11.2] D PAE2335 possible succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D PAE2116 methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D PAE0885 thermostable carboxypeptidase K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19] D PAE3461 heat shock protein, htpX homolog, conjectural K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D PAE3547 heat shock protein, htpX homolog, conjectural K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D PAE1990 conserved hypothetical protein K06974 amzA; archaemetzincin [EC:3.4.-.-] D PAE0243 hypothetical protein K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D PAE0264 signal peptidase K13280 SEC11; signal peptidase I [EC:3.4.21.89] D PAE1302 tricorn protease K08676 tri; tricorn protease [EC:3.4.21.-] D PAE3124 penicillin amidase K01434 pac; penicillin G amidase [EC:3.5.1.11] D PAE1099 integral membrane protein (rhomboid related), putative K07059 K07059; rhomboid family protein D PAE1124 integral membrane protein (rhomboid related), putative K07059 K07059; rhomboid family protein D PAE2215 proteasome alpha subunit K03432 psmA; proteasome alpha subunit [EC:3.4.25.1] D PAE0807 proteasome beta subunit K03433 psmB; proteasome beta subunit [EC:3.4.25.1] D PAE3595 proteasome, beta subunit K03433 psmB; proteasome beta subunit [EC:3.4.25.1] D PAE3083 asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D PAE3371 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D PAE2919 pmbA, putative modulator of DNA gyrase K03592 pmbA; PmbA protein D PAE2918 tldD, putative modulator of DNA gyrase K03568 tldD; TldD protein C 01003 Glycosyltransferases [BR:pai01003] D PAE3488 UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase K01001 ALG7; UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [EC:2.7.8.15] D PAE3030 oligosaccharyl transferase STT3 homolog K07151 STT3; dolichyl-diphosphooligosaccharide---protein glycosyltransferase [EC:2.4.99.18] D PAE1555 dolichol-phosphate mannosyltransferase K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83] D PAE3429 glycogen synthase (starch (bacterial glycogen) synthase), putative K00703 glgA; starch synthase [EC:2.4.1.21] D PAE1272 trehalose-6-phosphate synthase K16055 TPS; trehalose 6-phosphate synthase/phosphatase [EC:2.4.1.15 3.1.3.12] C 01005 Lipopolysaccharide biosynthesis proteins C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:pai01011] D PAE0576 bacitracin resistence protein K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] C 01004 Lipid biosynthesis proteins [BR:pai01004] D PAE0797 short chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PAE2832 short chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PAE2089 short chain dehydrogenase family K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PAE2481 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PAE2865 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PAE2867 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PAE3250 conserved hypothetical protein K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D PAE3249 conserved hypothetical protein K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13] D PAE1379 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D PAE2466 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 01008 Polyketide biosynthesis proteins C 01006 Prenyltransferases [BR:pai01006] D PAE1013 polyprenyl synthetase K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29] D PAE2375 4-hydroxybenzoate octaprenyltransferase (ubiA) K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D PAE1333 cytochrome C oxidase assembly factor K02257 COX10; heme o synthase [EC:2.5.1.141] D PAE3597 cytochrome C oxidase assembly factor K02257 COX10; heme o synthase [EC:2.5.1.141] C 01007 Amino acid related enzymes [BR:pai01007] D PAE2969 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D PAE0630 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D PAE1931 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D PAE3091 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D PAE0821 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D PAE3343 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D PAE2940 methionyl-tRNA synthetase alpha subunit K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D PAE1617 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D PAE2297 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D PAE1107 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D PAE1840 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D PAE2973 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D PAE2557 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D PAE0703 aspartyl-tRNA synthetase K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23] D PAE1553 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D PAE2266 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D PAE3158 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D PAE2165 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D PAE1748 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D PAE3565 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D PAE1441 phenylalanyl-tRNA synthetase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D PAE1669 phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D PAE2251 aspartate aminotransferase (aspC), conjectural K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D PAE1964 aspartate aminotransferase (aspC), conjectural K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D PAE0918 histidinol-phosphate aminotransferase (hisC) K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D PAE0958 histidinol-phosphate aminotransferase (hisC) K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D PAE2515 acetylornithine aminotransferase (argD) K05830 lysJ; [amino-group carrier protein]-gamma-(L-lysyl/L-ornithyl)-L-glutamate aminotransferase [EC:2.6.1.118 2.6.1.124] D PAE1799 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D PAE0594 glutamate-1-semialdehyde aminotransferase (hemL) K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D PAE3297 branched-chain amino acid aminotransferase (ilvE) K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D PAE2053 pleiotropic regulatory protein, conjectural K13010 per; perosamine synthetase [EC:2.6.1.102] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:pai03000] D PAE1659 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D PAE3201 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D PAE2164 transcription initiation factor TFIID (TATA-binding) K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein D PAE2210 conserved hypothetical protein K22206 thiR; XRE family transcriptional regulator, thiamine biosynthesis regulator D PAE2282 conserved hypothetical protein K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator D PAE0813 molybdenum-pterin-binding protein, conjectural K02019 modE; molybdate transport system regulatory protein D PAE0202 conserved hypothetical protein K07725 csa3; CRISPR-associated protein Csa3 D PAE1627 hypothetical protein K07728 K07728; putative transcriptional regulator D PAE1638 conserved hypothetical protein K07731 K07731; putative transcriptional regulator D PAE2022 conserved (helix-turn-helix protein, copG family) K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator D PAE0170 conserved protein (tenA homolog) K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] C 03021 Transcription machinery [BR:pai03021] D PAE1645 transcription initiation factor IIB (TFIIB) K03124 TFIIB; transcription initiation factor TFIIB D PAE3329 transcription initiation factor IIB (TFIIB) K03124 TFIIB; transcription initiation factor TFIIB D PAE2164 transcription initiation factor TFIID (TATA-binding) K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein D PAE0781 conserved hypothetical protein K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha D PAE2991 conserved hypothetical protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D PAE3563 DNA-directed RNA polymerase subunit E'' (rpoE2) K15171 SUPT4H1; transcription elongation factor SPT4 D PAE3103 transcription antitermination protein nusG, putative K15172 SUPT5H; transcription elongation factor SPT5 D PAE3333 conserved hypothetical protein K24104 GPN; GPN-loop GTPase D PAE0669 transcription termination factor NusA, putative K02600 nusA; transcription termination/antitermination protein NusA D PAE0666 DNA-directed RNA polymerase subunit A' (rpoA1) K03041 rpoA1; DNA-directed RNA polymerase subunit A' [EC:2.7.7.6] D PAE0667 DNA-directed RNA polymerase subunit A'' (rpoA2) K03042 rpoA2; DNA-directed RNA polymerase subunit A" [EC:2.7.7.6] D PAE0665 DNA-directed RNA polymerase subunit B (rpoB) K13798 rpoB; DNA-directed RNA polymerase subunit B [EC:2.7.7.6] D PAE0671 DNA-directed RNA polymerase subunit D (rpoD) K03047 rpoD; DNA-directed RNA polymerase subunit D [EC:2.7.7.6] D PAE3562 DNA-directed RNA polymerase subunit E' (rpoE1) K03049 rpoE1; DNA-directed RNA polymerase subunit E' [EC:2.7.7.6] D PAE3335 conserved hypothetical protein K03051 rpoF; DNA-directed RNA polymerase subunit F [EC:2.7.7.6] D PAE0664 DNA-directed RNA polymerase subunit H (rpoH) K03053 rpoH; DNA-directed RNA polymerase subunit H [EC:2.7.7.6] D PAE3271 DNA-directed RNA polymerase subunit K03055 rpoK; DNA-directed RNA polymerase subunit K [EC:2.7.7.6] D PAE1978 DNA-directed RNA polymerase subunit L (rpoL) K03056 rpoL; DNA-directed RNA polymerase subunit L [EC:2.7.7.6] D PAE0675a DNA-directed RNA polymerase subunit N (rpoN) K03058 rpoN; DNA-directed RNA polymerase subunit N [EC:2.7.7.6] D PAE2258 DNA-directed RNA polymerase subunit K03059 rpoP; DNA-directed RNA polymerase subunit P [EC:2.7.7.6] D PAE3480 transcription associated protein, conjectural K03057 tfs; transcription factor S D PAE3040 DNA-directed RNA polymerase subunit M K03057 tfs; transcription factor S C 03019 Messenger RNA biogenesis [BR:pai03019] D PAE3563 DNA-directed RNA polymerase subunit E'' (rpoE2) K15171 SUPT4H1; transcription elongation factor SPT4 D PAE3103 transcription antitermination protein nusG, putative K15172 SUPT5H; transcription elongation factor SPT5 D PAE3171 AAA family ATPase, possible cell division control protein cdc48 K13525 VCP; transitional endoplasmic reticulum ATPase D PAE0696 AAA family ATPase, possible cell division control protein cdc48 K13525 VCP; transitional endoplasmic reticulum ATPase D PAE3287 cell division protein pelota (pelA), conjectural K06965 PELO; protein pelota D PAE2906 peptide chain release factor aRF subunit 1 K03265 ETF1; peptide chain release factor subunit 1 D PAE1764 GTP-binding protein K03231 EEF1A; elongation factor 1-alpha D PAE3000 translation elongation factor aEF-1 alpha subunit K03231 EEF1A; elongation factor 1-alpha D PAE1975 conserved protein (RNA polymerase related) K07573 CSL4; exosome complex component CSL4 D PAE2208 conserved hypothetical protein K03679 RRP4; exosome complex component RRP4 D PAE2207 3' exoribonuclease family protein K11600 RRP41; exosome complex component RRP41 D PAE2206 3' exoribonuclease family protein K12589 RRP42; exosome complex component RRP42 D PAE0812 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 03041 Spliceosome [BR:pai03041] D PAE1008 conserved hypothetical protein K06874 ZPR1; zinc finger protein ZPR1 C 03011 Ribosome [BR:pai03011] D PAE3472 ribosomal protein S3 K02984 RP-S3Ae; small subunit ribosomal protein S3Ae D PAE3313 ribosomal protein S4 K02987 RP-S4e; small subunit ribosomal protein S4e D PAE1505 ribosomal protein S6 K02991 RP-S6e; small subunit ribosomal protein S6e D PAE3331 ribosomal protein S8 K02995 RP-S8e; small subunit ribosomal protein S8e D PAE0804 ribosomal protein S17 K02962 RP-S17e; small subunit ribosomal protein S17e D PAE3043 ribosomal protein S19 K02966 RP-S19e; small subunit ribosomal protein S19e D PAE2434 ribosomal protein S24 K02974 RP-S24e; small subunit ribosomal protein S24e D PAE2188 conserved hypothetical protein K02975 RP-S25e; small subunit ribosomal protein S25e D PAE2169 ribosomal protein S26 K02976 RP-S26e; small subunit ribosomal protein S26e D PAE3033 ribosomal protein S27 K02978 RP-S27e; small subunit ribosomal protein S27e D PAE2432 ribosomal protein S27 K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae D PAE3344 ribosomal protein S28 K02979 RP-S28e; small subunit ribosomal protein S28e D PAE2455 ribosomal protein S30 K02983 RP-S30e; small subunit ribosomal protein S30e D PAE1971 ribosomal protein L4 K02930 RP-L4e; large subunit ribosomal protein L4e D PAE3347 ribosomal protein L7 K02936 RP-L7Ae; large subunit ribosomal protein L7Ae D PAE3567 ribosomal protein L10 K02866 RP-L10e; large subunit ribosomal protein L10e D PAE1639 ribosomal protein L13 K02873 RP-L13e; large subunit ribosomal protein L13e D PAE0862 ribosomal protein L14 K02875 RP-L14e; large subunit ribosomal protein L14e D PAE1833 ribosomal protein L15 K02877 RP-L15e; large subunit ribosomal protein L15e D PAE0672 ribosomal protein L18 K02883 RP-L18e; large subunit ribosomal protein L18e D PAE2100 ribosomal protein L19 K02885 RP-L19e; large subunit ribosomal protein L19e D PAE3334 ribosomal protein L21 K02889 RP-L21e; large subunit ribosomal protein L21e D PAE3345 ribosomal protein L24 K02896 RP-L24e; large subunit ribosomal protein L24e D PAE0668 ribosomal protein L30 K02908 RP-L30e; large subunit ribosomal protein L30e D PAE3095 ribosomal protein L31 K02910 RP-L31e; large subunit ribosomal protein L31e D PAE2099 ribosomal protein L32 K02912 RP-L32e; large subunit ribosomal protein L32e D PAE3224 ribosomal protein L34 K02915 RP-L34e; large subunit ribosomal protein L34e D PAE2202 ribosomal protein L37 K02921 RP-L37Ae; large subunit ribosomal protein L37Ae D PAE1714 ribosomal protein L38 K02923 RP-L38e; large subunit ribosomal protein L38e D PAE3255 ribosomal protein L40 K02927 RP-L40e; ubiquitin-large subunit ribosomal protein L40e D PAE3034 ribosomal protein L44 K02929 RP-L44e; large subunit ribosomal protein L44e D PAE0817 ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D PAE1779 ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D PAE3084 ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D PAE1182 ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D PAE0733 ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D PAE2098 ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D PAE0674 ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D PAE2907 ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D PAE3179 ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D PAE0670 ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D PAE3085 ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D PAE2097 ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D PAE3485 ribosomal protein S13 K02956 RP-S15; small subunit ribosomal protein S15 D PAE1730 ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D PAE1729 ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D PAE3106 ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D PAE0803 ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D PAE1970 ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D PAE3575 ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D PAE2377 ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D PAE3107 acidic ribosomal protein P0 (L10E) K02864 RP-L10; large subunit ribosomal protein L10 D PAE3104 ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D PAE0673 ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D PAE3136 ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D PAE3436 ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D PAE2101 ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D PAE1782 ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D PAE1972 ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D PAE3312 ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D PAE1778 ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D PAE1183 ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D PAE1712 ribosomal protein L12 K02869 RP-L12; large subunit ribosomal protein L12 D PAE3098 ribosomal protein LX K02944 RP-LX; large subunit ribosomal protein LX D PAErR5S 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D PAErR16S small subunit 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D PAErR23S large subunit 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:pai03009] D PAE3232 nop family pre-rRNA processing protein K14564 NOP56; nucleolar protein 56 D PAE3031 conserved hypothetical protein K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3 D PAE2201 conserved hypothetical protein K14561 IMP4; U3 small nucleolar ribonucleoprotein protein IMP4 D PAE1979 conserved hypothetical protein K14568 EMG1; rRNA small subunit pseudouridine methyltransferase Nep1 [EC:2.1.1.260] D PAE3473 conserved hypothetical protein K06961 KRR1; ribosomal RNA assembly protein D PAE3474 conserved hypothetical protein K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D PAE0680 conserved hypothetical protein K07179 RIOK2; RIO kinase 2 [EC:2.7.11.1] D PAE2972 conserved hypothetical protein K18532 AK6; adenylate kinase [EC:2.7.4.3] D PAE2352 RNase L inhibitor homolog K06174 ABCE1; ATP-binding cassette, sub-family E, member 1 D PAE3626 conserved hypothetical protein K06943 NOG1; nucleolar GTP-binding protein D PAE0841 conserved hypothetical protein K06947 GRC3; polynucleotide 5'-hydroxyl-kinase GRC3/NOL9 [EC:2.7.1.-] D PAE2242 conserved hypothetical protein K06947 GRC3; polynucleotide 5'-hydroxyl-kinase GRC3/NOL9 [EC:2.7.1.-] D PAE3097 translation initiation factor aIF-6 K03264 EIF6; translation initiation factor 6 D PAE1653 conserved hypothetical protein K07562 NMD3; 60S ribosomal export protein NMD3 D PAE2209 conserved hypothetical protein K14574 SDO1; ribosome maturation protein SDO1 D PAE3171 AAA family ATPase, possible cell division control protein cdc48 K13525 VCP; transitional endoplasmic reticulum ATPase D PAE0696 AAA family ATPase, possible cell division control protein cdc48 K13525 VCP; transitional endoplasmic reticulum ATPase D PAE3228 fibrillarin-like pre-rRNA processing protein (flpA) K04795 flpA; fibrillarin-like pre-rRNA processing protein D PAE3347 ribosomal protein L7 K02936 RP-L7Ae; large subunit ribosomal protein L7Ae D PAE3330 hypothetical protein K07569 gar1; RNA-binding protein D PAE0669 transcription termination factor NusA, putative K02600 nusA; transcription termination/antitermination protein NusA D PAE3221 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D PAE3578 sun family protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D PAE2246 N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D PAE0771 N-acyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D PAE0645 ribosomal protein S6 modification protein (rimK) K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-] D PAE1818 ribosomal protein S6 modification protein (rimK) K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-] D PAE0782 conserved protein (possible hflX) K03665 hflX; GTPase D PAE2978 sua5 family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D PAE3165 GTP binding protein, putative K06942 ychF; ribosome-binding ATPase D PAE0030 conserved hypothetical protein K22469 fau-1; probable ribonuclease FAU-1 [EC:3.1.26.-] C 03016 Transfer RNA biogenesis [BR:pai03016] D PAE3282 conserved hypothetical protein K00784 rnz; ribonuclease Z [EC:3.1.26.11] D PAE3218 conserved hypothetical protein K00784 rnz; ribonuclease Z [EC:3.1.26.11] D PAE0998 conserved hypothetical protein K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8] D PAE1678 conserved hypothetical protein K24956 ZBTB8OS; protein archease D PAE1764 GTP-binding protein K03231 EEF1A; elongation factor 1-alpha D PAE3000 translation elongation factor aEF-1 alpha subunit K03231 EEF1A; elongation factor 1-alpha D PAE2969 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D PAE2165 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D PAE1617 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D PAE1107 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D PAE2940 methionyl-tRNA synthetase alpha subunit K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D PAE3343 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D PAE1840 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D PAE3565 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D PAE2973 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D PAE2557 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D PAE2266 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D PAE1748 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D PAE3158 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D PAE0821 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D PAE2297 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D PAE1553 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D PAE1441 phenylalanyl-tRNA synthetase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D PAE1669 phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D PAE0630 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D PAE1931 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D PAE3091 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D PAE2331 conserved hypothetical protein K09716 dtdA; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D PAE2317 alanyl-tRNA synthetase related protein K07050 AARSD1; misacylated tRNA(Ala) deacylase [EC:3.1.1.-] D PAE3162 HIT family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D PAE2939 conserved hypothetical protein K15865 CDKAL1; threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:2.8.4.5] D PAE1628 N2,N2-dimethylguonasine tRNA methyltransferase K00555 TRMT1; tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase [EC:2.1.1.215 2.1.1.216] D PAE1486 conserved hypothetical protein K15429 TRM5; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D PAE2166 beta-aspartate methyltransferase (pimT), conjectural K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220] D PAE0164 conserved hypothetical protein K15449 TYW1; tRNA wybutosine-synthesizing protein 1 [EC:4.1.3.44] D PAE2913 conserved hypothetical protein K15450 TYW3; tRNA wybutosine-synthesizing protein 3 [EC:2.1.1.282] D PAE1142 tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D PAE0865 tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D PAE3134 conserved hypothetical protein K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27] D PAE3368 conserved hypothetical protein K07583 PUS10; tRNA pseudouridine synthase 10 [EC:5.4.99.25] D PAE2192 conserved hypothetical protein K08851 TP53RK; TP53 regulating kinase and related kinases [EC:2.7.11.1] D PAE2430 o-syaloglycoprotein endopeptidase K01409 OSGEP; N6-L-threonylcarbamoyladenine synthase [EC:2.3.1.234] D PAE0922 conserved hypothetical protein K07739 ELP3; elongator complex protein 3 (tRNA carboxymethyluridine synthase) [EC:2.3.1.311] D PAE2978 sua5 family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D PAE3175 conserved hypothetical protein K06963 TAN1; tRNA acetyltransferase TAN1 D PAE2935 conserved hypothetical protein K06963 TAN1; tRNA acetyltransferase TAN1 D PAE3325 tRNA nucleotidyltransferase K07558 K07558; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72] D PAE2269 tRNA intron endonuclease K01170 endA; tRNA-intron endonuclease, archaea type [EC:4.6.1.16] D PAE0789 hypothetical protein K01170 endA; tRNA-intron endonuclease, archaea type [EC:4.6.1.16] D PAE3326 conserved hypothetical protein K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58] D PAE3647 conserved hypothetical protein K07559 kptA; putative RNA 2'-phosphotransferase [EC:2.7.1.-] D PAE0703 aspartyl-tRNA synthetase K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23] D PAE2175 hypothetical protein K16317 trmY; tRNA (pseudouridine54-N1)-methyltransferase [EC:2.1.1.257] D PAE0001 conserved hypothetical protein K15566 trm10; tRNA (adenine9-N1/guanine9-N1)-methyltransferase [EC:2.1.1.218 2.1.1.221] D PAE3215 conserved hypothetical protein K16318 trm14; tRNA (guanine6-N2)-methyltransferase [EC:2.1.1.256] D PAE2074 conserved hypothetical protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D PAE0010 coenzyme PQQ synthesis protein, conjectural K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D PAE0777 queuine tRNA-ribosyltransferase K18779 tgtA; 7-cyano-7-deazaguanine tRNA-ribosyltransferase [EC:2.4.2.48] D PAE3421 thiamine biosynthesis protein (thiI), probable K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D PAE0933 conserved hypothetical protein K06932 tiaS; tRNA(Ile2)-agmatinylcytidine synthase [EC:6.3.4.22] D PAE1371 conserved hypothetical protein K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193] C 03012 Translation factors [BR:pai03012] D PAE1072 translation initiation factor aIF-1A K03236 EIF1A; translation initiation factor 1A D PAE3340 translation initiation factor SUI1 homolog K03113 EIF1; translation initiation factor 1 D PAE3032 translation initiation factor aIF-2 alpha subunit K03237 EIF2S1; translation initiation factor 2 subunit 1 D PAE1373 translation initiation factor aIF-2B beta subunit K03238 EIF2S2; translation initiation factor 2 subunit 2 D PAE0064 translation initiation factor aIF-2 gamma subunit, putative K03242 EIF2S3; translation initiation factor 2 subunit 3 D PAE0741 translation initiation factor aIF-2B alpha subunit K03239 EIF2B1; translation initiation factor eIF-2B subunit alpha D PAE1244 translation initiation factor aIF-2B subunit, conjectural K03680 EIF2B4; translation initiation factor eIF-2B subunit delta D PAE3337 translation initiation factor aIF-5A K03263 EIF5A; translation initiation factor 5A D PAE1513 translation initiation factor IF-2 (infB), putative K03243 EIF5B; translation initiation factor 5B D PAE3097 translation initiation factor aIF-6 K03264 EIF6; translation initiation factor 6 D PAE1764 GTP-binding protein K03231 EEF1A; elongation factor 1-alpha D PAE3000 translation elongation factor aEF-1 alpha subunit K03231 EEF1A; elongation factor 1-alpha D PAE0695 translation elongation factor aEF-1 beta subunit K03232 EEF1B; elongation factor 1-beta D PAE0332 translation elongation factor aEF-2 K03234 EEF2; elongation factor 2 D PAE2994 conserved hypothetical protein K07561 DPH1; 2-(3-amino-3-carboxypropyl)histidine synthase [EC:2.5.1.108] D PAE2672 conserved hypothetical protein K06927 DPH6; diphthine-ammonia ligase [EC:6.3.1.14] D PAE2906 peptide chain release factor aRF subunit 1 K03265 ETF1; peptide chain release factor subunit 1 D PAE2224 conserved hypothetical protein K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D PAE0710 conserved hypothetical protein K04794 PTH2; peptidyl-tRNA hydrolase, PTH2 family [EC:3.1.1.29] C 03110 Chaperones and folding catalysts [BR:pai03110] D PAE2117 thermosome (chaperonin) alpha subunit K22447 cct; archaeal chaperonin D PAE3273 thermosome (chaperonin) beta subunit K22447 cct; archaeal chaperonin D PAE3172 small heat shock protein, hsp20 homolog, conjectural K13993 HSP20; HSP20 family protein D PAE2270 small heat shock protein, hsp20 homolog, conjectural K13993 HSP20; HSP20 family protein D PAE3099 conserved hypothetical protein K04797 pfdA; prefoldin alpha subunit D PAE2199 conserved hypothetical protein K04798 pfdB; prefoldin beta subunit D PAE0805 FKBP-type peptidyl-prolyl cis-trans isomerases K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] C 04131 Membrane trafficking [BR:pai04131] D PAE1561 nucleoside diphosphate kinase (ndk) K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D PAE3171 AAA family ATPase, possible cell division control protein cdc48 K13525 VCP; transitional endoplasmic reticulum ATPase D PAE0696 AAA family ATPase, possible cell division control protein cdc48 K13525 VCP; transitional endoplasmic reticulum ATPase D PAE1427 arsenical pump-driving ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-] D PAE0819 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D PAE1764 GTP-binding protein K03231 EEF1A; elongation factor 1-alpha D PAE3000 translation elongation factor aEF-1 alpha subunit K03231 EEF1A; elongation factor 1-alpha C 04121 Ubiquitin system [BR:pai04121] D PAE3255 ribosomal protein L40 K02927 RP-L40e; ubiquitin-large subunit ribosomal protein L40e D PAE2432 ribosomal protein S27 K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae D PAE2455 ribosomal protein S30 K02983 RP-S30e; small subunit ribosomal protein S30e C 03051 Proteasome [BR:pai03051] D PAE2215 proteasome alpha subunit K03432 psmA; proteasome alpha subunit [EC:3.4.25.1] D PAE0807 proteasome beta subunit K03433 psmB; proteasome beta subunit [EC:3.4.25.1] D PAE3595 proteasome, beta subunit K03433 psmB; proteasome beta subunit [EC:3.4.25.1] C 03032 DNA replication proteins [BR:pai03032] D PAE1792 hypothetical protein K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D PAE3038 proliferating-cell nuclear antigen homolog (PCNA) K04802 PCNA; proliferating cell nuclear antigen D PAE0720 proliferating-cell nuclear antigen homolog (PCNA) K04802 PCNA; proliferating cell nuclear antigen D PAE0698 DNA endonuclease rad2 homolog K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D PAE0833 DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D PAE1659 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D PAE3201 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D PAE3031 conserved hypothetical protein K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3 D PAE1735 conserved hypothetical protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] D PAE2112 conserved protein (toprim domain) K02316 dnaG; DNA primase [EC:2.7.7.101] D PAE0737 cell division control protein 6 (cdc6), putative K10725 cdc6A; archaeal cell division control protein 6 D PAE0901 DNA replication licensing factor (mcm) K10726 mcm; replicative DNA helicase Mcm [EC:5.6.2.3] D PAE3036 DNA primase related protein K02683 priS; DNA primase small subunit [EC:2.7.7.102] D PAE2238 conserved protein (possible primase) K18882 priL; DNA primase large subunit D PAE3035 hypothetical protein K09723 ginS; DNA replication factor GINS D PAE0965 hypothetical protein K09723 ginS; DNA replication factor GINS D PAE1216 ribonuclease HII (rnhB) K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D PAE2109 DNA-directed DNA polymerase (B3) K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7] D PAE2180 DNA-directed DNA polymerase (B1) K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7] D PAE1113 possible DNA-directed DNA polymerase (B2) K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7] D PAE0735 replication factor C large subunit K04800 rfcL; replication factor C large subunit D PAE0734 replication factor C small subunit K04801 rfcS; replication factor C small subunit D PAE1646 replication factor C small subunit K04801 rfcS; replication factor C small subunit D PAE2219 DNA topoisomerase VI (type II) subunit a K03166 top6A; DNA topoisomerase VI subunit A [EC:5.6.2.2] D PAE2217 DNA topoisomerase VI (type II) subunit b K03167 top6B; DNA topoisomerase VI subunit B [EC:5.6.2.2] D PAE2993 DNA topoisomerase (topA) K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D PAE1108 reverse gyrase K03170 topG; reverse gyrase [EC:5.6.2.2 5.6.2.-] C 03036 Chromosome and associated proteins [BR:pai03036] D PAE1659 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D PAE3201 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D PAE3431 conserved hypothetical protein K09142 SPOUT1; methyltransferase [EC:2.1.1.-] D PAE0793 conserved protein (possible ATP binding) K03593 mrp; ATP-binding protein involved in chromosome partitioning C 03400 DNA repair and recombination proteins [BR:pai03400] D PAE2012 methylated-DNA--[protein]-cysteine S-methyltransferase (ogt) K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D PAE3199 U/G & T/G mismatch specific glycosylase (Pa-MIG) K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D PAE0880 DNA-(apurinic or apyrimidinic site) lyase (endonuclease III, PaNth) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D PAE3038 proliferating-cell nuclear antigen homolog (PCNA) K04802 PCNA; proliferating cell nuclear antigen D PAE0720 proliferating-cell nuclear antigen homolog (PCNA) K04802 PCNA; proliferating cell nuclear antigen D PAE0698 DNA endonuclease rad2 homolog K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D PAE0833 DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D PAE2991 conserved hypothetical protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D PAE1735 conserved hypothetical protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] D PAE1918 mutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PAE2253 mutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PAE0651 uracil DNA glycosylase (Pa-UDGa) K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D PAE1327 uracil-DNA glycosylase (Pa-UDGb) K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D PAE3257 DNA-(apurinic or apyrimidinic site) lyase (endonuclease IV) K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D PAE0684 DNA endonuclease V, conjectural K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D PAE2792 conserved hypothetical protein part 1, authentic frameshift K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D PAE2280 conserved hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 D PAE2904 exonuclease sbcD, conjectural K03547 sbcD; DNA repair protein SbcD/Mre11 D PAE0200 conserved hypothetical protein K15342 cas1; CRISP-associated protein Cas1 D PAE0081 conserved hypothetical protein K15342 cas1; CRISP-associated protein Cas1 D PAE0654 DNA repair protein radA K04483 radA; DNA repair protein RadA D PAE3238 DNA repair protein radA K04483 radA; DNA repair protein RadA D PAE2162 Holliday Junction Resolvase K03552 hjr; holliday junction resolvase [EC:3.1.21.10] D PAE3527 conserved hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase D PAE0894 ATP-dependent, DNA binding helicase K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4] D PAE2993 DNA topoisomerase (topA) K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D PAE2362 ATP-dependent helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D PAE2130 ATP-dependent helicase, putative K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D PAE3155 ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D PAE1269 conserved hypothetical protein K22585 nreA; DNA repair protein NreA C 03029 Mitochondrial biogenesis [BR:pai03029] D PAE0630 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D PAE1931 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D PAE1107 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D PAE2266 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D PAE3343 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D PAE1525 Glu-tRNA(Gln) amidotransferase subunit A (gatA) K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D PAE0793 conserved protein (possible ATP binding) K03593 mrp; ATP-binding protein involved in chromosome partitioning D PAE1333 cytochrome C oxidase assembly factor K02257 COX10; heme o synthase [EC:2.5.1.141] D PAE3597 cytochrome C oxidase assembly factor K02257 COX10; heme o synthase [EC:2.5.1.141] D PAE1358 senC homolog K07152 SCO1; protein SCO1 D PAE2638 senC homolog K07152 SCO1; protein SCO1 B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:pai02000] D PAE3569 hypothetical protein K15495 wtpA; molybdate/tungstate transport system substrate-binding protein D PAE3570 sulfate ABC transporter, permease protein, putative K15496 wtpB; molybdate/tungstate transport system permease protein D PAE3571 ABC transporter ATP-binding protein, putative K15497 wtpC; molybdate/tungstate transport system ATP-binding protein [EC:7.3.2.5 7.3.2.6] D PAE0020 binding protein, putative K05772 tupA; tungstate transport system substrate-binding protein D PAE0022 sulfate transport system, permease protein, putative K05773 tupB; tungstate transport system permease protein D PAE0023 sulfate transport system, ATP-binding protein, putative K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6] D PAE0061 extracellular solute binding protein, conjectural K02012 afuA; iron(III) transport system substrate-binding protein D PAE0062 molybdenum transport system permease protein, putative K02011 afuB; iron(III) transport system permease protein D PAE0063 transporter ATP-binding protein, putative K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D PAE0331 thiamine-binding periplasmic protein K02064 thiB; thiamine transport system substrate-binding protein D PAE0329 conserved hypothetical protein K02063 thiP; thiamine transport system permease protein D PAE0328 thiamine transport ATP-binding protein K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15] D PAE0953 putrescine/spermidine binding protein, conjectural K11069 potD; spermidine/putrescine transport system substrate-binding protein D PAE2893 spermidine/putrescine transport permease protein K11070 potC; spermidine/putrescine transport system permease protein D PAE2891 spermidine/putrescine transport permease protein K11071 potB; spermidine/putrescine transport system permease protein D PAE2890 spermidine/putrescine transport ATP-binding protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D PAE1064 sulfonate transport permease protein, putative K02050 ABC.SN.P; NitT/TauT family transport system permease protein D PAE1066 taurine(sulfate) transport ATP-binding protein, putative K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D PAE1321 multiple sugar-binding transport ATP-binding K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D PAE3455 maltose ABC transporter, maltose binding protein K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein D PAE3456 maltose ABC transporter, permease protein K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D PAE3457 maltose ABC transporter, permease protein K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D PAE0689 multiple sugar binding protein K10196 glcS; glucose/arabinose transport system substrate-binding protein D PAE0688 multiple sugar transport permease protein K10197 glcT; glucose/arabinose transport system permease protein D PAE0686 multiple sugar transport permease protein K10198 glcU; glucose/arabinose transport system permease protein D PAE3121 sugar binding protein K07335 bmpA; basic membrane protein A and related proteins D PAE3414 conserved hypothetical protein K07335 bmpA; basic membrane protein A and related proteins D PAE3119 ribose ABC transporter, permease protein K23535 nupB; general nucleoside transport system permease protein D PAE3412 ribose ABC transporter, permease protein K23535 nupB; general nucleoside transport system permease protein D PAE3118 ribose ABC transporter, permease protein K23536 nupC; general nucleoside transport system permease protein D PAE3411 sugar transport permease protein K23536 nupC; general nucleoside transport system permease protein D PAE3413 ribose ABC transport system ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein D PAE3120 ribose ABC transport system ATP-binding K23537 nupA; general nucleoside transport system ATP-binding protein D PAE1324 multiple sugar binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D PAE1323 multiple sugar transport permease K02025 ABC.MS.P; multiple sugar transport system permease protein D PAE1322 multiple sugar transport permease K02026 ABC.MS.P1; multiple sugar transport system permease protein D PAE1397 phosphate-binding periplasmic protein, putative K02040 pstS; phosphate transport system substrate-binding protein D PAE1396 phosphate ABC transporter, permease protein K02037 pstC; phosphate transport system permease protein D PAE1395 phosphate ABC transporter, permease protein K02038 pstA; phosphate transport system permease protein D PAE1393 phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D PAE2700 hypothetical protein K02044 phnD; phosphonate transport system substrate-binding protein D PAE2697 transport protein, putative K02042 phnE; phosphonate transport system permease protein D PAE2699 iron (III) ABC transporter ATP-binding protein, putative K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D PAE2082 branched-chain amino acid binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D PAE3353 branched-chain amino acid binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D PAE3268 branched-chain amino acid binding protein, putative K01999 livK; branched-chain amino acid transport system substrate-binding protein D PAE1392 branched-chain amino acid binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D PAE1391 branched-chain amino acid transport permease protein K01997 livH; branched-chain amino acid transport system permease protein D PAE2083 branched-chain amino acid transport permease protein K01997 livH; branched-chain amino acid transport system permease protein D PAE3350 branched-chain amino acid transport permease protein K01997 livH; branched-chain amino acid transport system permease protein D PAE2084 branched-chain amino acid transport permease protein K01998 livM; branched-chain amino acid transport system permease protein D PAE3348 branched-chain amino acid transport permease protein K01998 livM; branched-chain amino acid transport system permease protein D PAE1390 branched-chain amino acid transport permease protein K01998 livM; branched-chain amino acid transport system permease protein D PAE1389 branched-chain amino acid transport ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D PAE2081 branched-chain amino acid transport ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D PAE2465 branched-chain amino acid ABC transporter, ATP-binding protein, putative K01995 livG; branched-chain amino acid transport system ATP-binding protein D PAE3354 branched-chain amino acid transport ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D PAE1363 branched-chain amino acid ABC transporter, ATP-binding protein, putative K01995 livG; branched-chain amino acid transport system ATP-binding protein D PAE1388 branched-chain amino acid transport ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D PAE2080 branched-chain amino acid transport ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D PAE3269 branched-chain amino acid ABC transporter, ATP-binding protein, putative K01996 livF; branched-chain amino acid transport system ATP-binding protein D PAE2096 bacterial extracellular solute-binding proteins, family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D PAE2954 bacterial extracellular solute-binding proteins, family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D PAE2000 glutamine transport system permease protein, putative K02029 ABC.PA.P; polar amino acid transport system permease protein D PAE2001 glutamine transport ATP-binding K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D PAE2391 dipeptide binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D PAE3088 oligopeptide binding protein, putative K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D PAE1300 dipeptide binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D PAE1299 dipeptide ABC transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D PAE2393 dipeptide transport permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D PAE3087 oligopeptide ABC transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D PAE1298 dipeptide ABC transporter, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D PAE2392 dipeptide transport permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D PAE3086 oligopeptide ABC transporter, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D PAE1297 dipeptide transport ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D PAE3317 oligopeptide transport ATP-binding protein, putative K02031 ddpD; peptide/nickel transport system ATP-binding protein D PAE1296 dipeptide transport ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D PAE3316 oligopeptide transport ATP-binding protein, putative K02032 ddpF; peptide/nickel transport system ATP-binding protein D PAE0367 conserved hypothetical protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D PAE0366 iron (III) dicitrate transport system, permease protein, putative K02015 ABC.FEV.P; iron complex transport system permease protein D PAE0564 conserved hypothetical protein K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein D PAE1247 manganese transport permease protein K02075 ABC.ZM.P; zinc/manganese transport system permease protein D PAE1246 manganese ABC transporter ATP-binding protein K02074 ABC.ZM.A; zinc/manganese transport system ATP-binding protein D PAE3064 ABC-2 type transport system, membrane protein K01992 ABC-2.P; ABC-2 type transport system permease protein D PAE0316 ABC-2 type transport system, membrane protein K01992 ABC-2.P; ABC-2 type transport system permease protein D PAE1171 conserved hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D PAE0270 membrane protein K01992 ABC-2.P; ABC-2 type transport system permease protein D PAE3065 ABC-2 type transport system, membrane protein K01992 ABC-2.P; ABC-2 type transport system permease protein D PAE1364 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D PAE1168 ABC transporter ATP-binding protein, putative K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D PAE1199 ABC transporter ATP-binding protein, putative K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D PAE0315 ABC-2 type transport system ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D PAE0269 ABC-2 type transport system ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D PAE3066 ABC-2 type transport system ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D PAE2288 conserved hypothetical protein K02004 ABC.CD.P; putative ABC transport system permease protein D PAE2286 ABC transporter ATP-binding protein, putative K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D PAE2785 ABC transporter ATP-binding protein, putative K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D PAE1808 ABC transporter, putative K09013 sufC; Fe-S cluster assembly ATP-binding protein D PAE2330 sugar transporter, conjectural K08369 ydjE; MFS transporter, putative metabolite:H+ symporter D PAE2715 cation efflux system protein K16264 czcD; cobalt-zinc-cadmium efflux system protein D PAE3636 conserved protein (gufA) K07238 TC.ZIP; zinc transporter, ZIP family D PAE0600 conserved hypothetical protein K07238 TC.ZIP; zinc transporter, ZIP family D PAE1372 conserved hypothetical protein K03298 TC.DME; drug/metabolite transporter, DME family D PAE1545 conserved hypothetical protein K03298 TC.DME; drug/metabolite transporter, DME family D PAE0566 conserved within P. aerophilum K07301 yrbG; cation:H+ antiporter D PAE1290 conserved within P. aerophilum part 2, authentic frameshift K07301 yrbG; cation:H+ antiporter D PAE2421 potassium transport peripheral protein, conjectural K03499 trkA; trk/ktr system potassium uptake protein D PAE1427 arsenical pump-driving ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-] D PAE0573 conserved hypothetical protein K09125 yhhQ; queuosine precursor transporter D PAE0791 conserved hypothetical protein K05595 marC; multiple antibiotic resistance protein D PAE0942 conserved hypothetical protein part 2, authentic frameshift K05595 marC; multiple antibiotic resistance protein D PAE1423 carbon starvation protein A homolog K06200 cstA; carbon starvation protein D PAE1771 vacuolar-type H+-pyrophosphatase K15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1] D PAE3611 nitrate reductase alpha subunit (narG) K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-] D PAE3612 nitrate reductase beta subunit (narH) K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-] D PAE0323 iron (II) transporter (feoB-2) part 1, conjectural, authentic frameshift K04759 feoB; ferrous iron transport protein B D PAE3624 cytochrome C-type biogenesis protein, probable K02198 ccmF; cytochrome c-type biogenesis protein CcmF C 02044 Secretion system [BR:pai02044] D PAE2119 conjugal transfer protein, conjectural K07332 flaI; archaeal flagellar protein FlaI D PAE2778 type II secretion system protein, conjectural K07332 flaI; archaeal flagellar protein FlaI D PAE2779 hypothetical protein K07333 flaJ; archaeal flagellar protein FlaJ D PAE1599 hypothetical protein K07991 flaK; archaeal preflagellin peptidase FlaK [EC:3.4.23.52] D PAE3435 preprotein translocase secY subunit K03076 secY; preprotein translocase subunit SecY D PAE3365 signal recognition particle (srp54 family), putative K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D PAE3100 signal recognition particle protein (docking protein), probable K03110 ftsY; fused signal recognition particle receptor D PAE3332 signal recognition particle K03105 SRP19; signal recognition particle subunit SRP19 D PAE1546 conserved hypothetical protein K03116 tatA; sec-independent protein translocase protein TatA D PAE1547 membrane protein (mttB family) K03118 tatC; sec-independent protein translocase protein TatC C 02042 Bacterial toxins C 02022 Two-component system C 02035 Bacterial motility proteins [BR:pai02035] D PAE2119 conjugal transfer protein, conjectural K07332 flaI; archaeal flagellar protein FlaI D PAE2778 type II secretion system protein, conjectural K07332 flaI; archaeal flagellar protein FlaI D PAE2779 hypothetical protein K07333 flaJ; archaeal flagellar protein FlaJ D PAE1599 hypothetical protein K07991 flaK; archaeal preflagellin peptidase FlaK [EC:3.4.23.52] C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:pai04812] D PAE0818 conserved hypothetical protein K06990 MEMO1; MEMO1 family protein D PAE2276 hypothetical protein K18641 K18641; crenactin C 04147 Exosome [BR:pai04147] D PAE0812 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D PAE1742 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D PAE0819 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D PAE2085 peroxiredoxin, probable K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24] D PAE1764 GTP-binding protein K03231 EEF1A; elongation factor 1-alpha D PAE3000 translation elongation factor aEF-1 alpha subunit K03231 EEF1A; elongation factor 1-alpha D PAE0332 translation elongation factor aEF-2 K03234 EEF2; elongation factor 2 D PAE0698 DNA endonuclease rad2 homolog K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D PAE2432 ribosomal protein S27 K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae D PAE3171 AAA family ATPase, possible cell division control protein cdc48 K13525 VCP; transitional endoplasmic reticulum ATPase D PAE0696 AAA family ATPase, possible cell division control protein cdc48 K13525 VCP; transitional endoplasmic reticulum ATPase D PAE3162 HIT family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D PAE1379 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D PAE2466 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D PAE2730 selenium binding protein, probable K17285 SELENBP1; methanethiol oxidase [EC:1.8.3.4] D PAE1220 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE1377 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2488 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2486 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2183 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE2471 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAE3140 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D PAE1681 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D PAE2951 hypothetical protein K00939 adk; adenylate kinase [EC:2.7.4.3] D PAE2887 argininosuccinate lyase (argH) K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D PAE2884 argininosuccinate synthase (argG) K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D PAE1185 galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D PAE3442 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAE2556 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAE0583 porphobilinogen synthase (delta-aminolevulinic acid dehydratase) (hemB) K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D PAE2713 4a-hydroxytetrahydrobiopterin dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D PAE3320 D-3-phosphoglycerate dehydrogenase (serA) K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D PAE2649 pyruvate dehydrogenase E3 (dihydrolipoamide dehydrogenase) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PAE0721 electron transfer flavoprotein alpha subunit (etfA) K03522 fixB; electron transfer flavoprotein alpha subunit D PAE3587 electron transfer flavoprotein alpha subunit (etfA) K03522 fixB; electron transfer flavoprotein alpha subunit D PAE1996 glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D PAE3438 glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D PAE1501 triosephosphate isomerase (tpiA) K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] C 02048 Prokaryotic defense system [BR:pai02048] D PAE0200 conserved hypothetical protein K15342 cas1; CRISP-associated protein Cas1 D PAE0081 conserved hypothetical protein K15342 cas1; CRISP-associated protein Cas1 D PAE0199 conserved hypothetical protein K09951 cas2; CRISPR-associated protein Cas2 D PAE0208 helicase, probable K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4] D PAE0068 helicase, probable K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4] D PAE0207 conserved hypothetical protein K07475 cas3; CRISPR-associated endonuclease Cas3-HD [EC:3.1.-.-] D PAE0201 conserved hypothetical protein K19085 csa1; CRISPR-associated protein Csa1 D PAE0082 conserved hypothetical protein K19085 csa1; CRISPR-associated protein Csa1 D PAE0202 conserved hypothetical protein K07725 csa3; CRISPR-associated protein Csa3 D PAE0205 conserved hypothetical protein K19086 csa4; CRISPR-associated protein Csa4 D PAE0211 conserved hypothetical protein K19087 csa5; CRISPR-associated protein Csa5 D PAE0210 conserved hypothetical protein K19075 cst2; CRISPR-associated protein Cst2 D PAE0079 conserved hypothetical protein K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] D PAE0198 conserved hypothetical protein K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] D PAE1763 conserved hypothetical protein K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] D PAE0209 hypothetical protein K19089 cas5a_b_c; CRISPR-associated protein Cas5a/b/c D PAE0109 conserved hypothetical protein K07016 csm1; CRISPR-associated protein Csm1 D PAE0114 conserved hypothetical protein K09002 csm3; CRISPR-associated protein Csm3 D PAE0112 hypothetical protein K19139 csm4; CRISPR-associated protein Csm4 D PAE0111 hypothetical protein K19140 csm5; CRISPR-associated protein Csm5 D PAE0117 hypothetical protein K19143 csx1; CRISPR-associated protein Csx1 D PAE1659 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D PAE3201 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D PAE2969 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D PAE0626 hypothetical protein K07060 nob1; endoribonuclease Nob1 [EC:3.1.-.-] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules [BR:pai04090] C 01504 Antimicrobial resistance genes C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:pai03100] D PAEtR25 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D PAEtR41 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D PAEtR34 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D PAEtR38 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D PAEtR44 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D PAEtR33 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D PAEtR06 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D PAEtR43 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D PAEtR36 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D PAEtR14 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D PAEtR24 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D PAEtR08 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D PAEtR37 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D PAEtR07 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D PAEtR20 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D PAEtR04 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D PAEtR17 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D PAEtR13 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D PAEtR26 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D PAEtR31 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D PAEtR01 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D PAEtR40 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D PAEtR35 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D PAEtR18 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D PAEtR19 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D PAEtR16 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D PAEtR03 tRNA-Val K14237 tRNA-Val; tRNA Val D PAErR16S small subunit 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D PAErR23S large subunit 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D PAErR5S 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D PAE1936 carbon monoxide dehydrogenase small subunit, conjectural K03518 coxS; aerobic carbon-monoxide dehydrogenase small subunit [EC:1.2.5.3] D PAE1939 carbon monoxide dehydrogenase medium subunit, conjectural K03519 coxM; aerobic carbon-monoxide dehydrogenase medium subunit [EC:1.2.5.3] D PAE1935 carbon monoxide dehydrogenase large subunit, conjectural K03520 coxL; aerobic carbon-monoxide dehydrogenase large subunit [EC:1.2.5.3] D PAE3477 indolepyruvate ferredoxin oxidoreductase alpha subunit part 2, authentic frameshift K00179 iorA; indolepyruvate ferredoxin oxidoreductase, alpha subunit [EC:1.2.7.8] D PAE3478 indolepyruvate ferredoxin oxidoreductase alpha subunit part 1, authentic frameshift K00179 iorA; indolepyruvate ferredoxin oxidoreductase, alpha subunit [EC:1.2.7.8] D PAE3475 indolepyruvate ferredoxin oxidoreductase beta subunit K00180 iorB; indolepyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.8] D PAE0725 electron transfer flavoprotein-quinone oxidoreductase K00313 fixC; electron transfer flavoprotein-quinone oxidoreductase [EC:1.5.5.-] D PAE2371 NADH oxidase (nox) K18367 CoADR; CoA-dependent NAD(P)H sulfur oxidoreductase [EC:1.8.1.18] D PAE2696 pseudocatalase K07217 ydbD; manganese catalase [EC:1.11.1.6] D PAE0877 antioxidant protein, putative K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D PAE2732 bacterioferritin comigratory protein homolog K24129 K24129; glutaredoxin-dependent peroxiredoxin [EC:1.11.1.25] D PAE2656 pirin homolog K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D PAE2623 mercuric reductase K00520 merA; mercuric reductase [EC:1.16.1.1] D PAE2284 molybdenum cofactor biosynthesis protein (moaA) K06937 E1.21.98.5; tetraether lipid synthase [EC:1.21.98.5] D PAE3672 pyruvate formate-lyase activating enzyme homolog K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D PAE2451 pyruvate formate-lyase activating enzyme homolog K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D PAE3184 pyruvate formate-lyase activating enzyme homolog K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D PAE2191 pyruvate formate-lyase activating enzyme homolog K04070 pflX; putative pyruvate formate lyase activating enzyme [EC:1.97.1.4] D PAE0701 protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D PAE1139 diphthine synthase (dph5) K20215 dph5; diphthine synthase [EC:2.1.1.98] D PAE3487 deoxyhypusine synthase K00809 DHPS; deoxyhypusine synthase [EC:2.5.1.46] D PAE2176 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (pgsA) K17884 E2.7.8.39; archaetidylinositol phosphate synthase [EC:2.7.8.39] D PAE2469 conserved hypothetical protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D PAE3323 conserved hypothetical protein K09116 K09116; damage-control phosphatase, subfamily I [EC:3.1.3.-] D PAE2003 conserved hypothetical protein K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D PAE1797 conserved hypothetical protein K07503 nucS; endonuclease [EC:3.1.-.-] D PAE3003 conserved hypothetical protein K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] D PAE2039 moxR related protein K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D PAE2901 conserved hypothetical protein K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D PAE2240 conserved hypothetical protein K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D PAE3627 conserved hypothetical protein K22205 E3.13.2.3; S-adenosyl-L-methionine hydrolase (adenosine-forming) [EC:3.13.2.3] D PAE2520 conserved hypothetical protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6] D PAE2237 conserved hypothetical protein K01741 E4.2.99.18; DNA-(apurinic or apyrimidinic site) lyase [EC:4.2.99.18] D PAE3596 RNA 3'-terminal phosphate cyclase K01974 RTCA; RNA 3'-terminal phosphate cyclase (ATP) [EC:6.5.1.4] C 99981 Carbohydrate metabolism D PAE3378 sugar fermentation stimulation protein, conjectural K06206 sfsA; sugar fermentation stimulation protein A D PAE1289 conserved hypothetical protein K00782 lldG; L-lactate dehydrogenase complex protein LldG C 99982 Energy metabolism D PAE2664 formate dehydrogenase delta subunit K02379 fdhD; FdhD protein D PAE2450 ferredoxin K05337 fer; ferredoxin D PAE2013 ferredoxin K05337 fer; ferredoxin D PAE0722 electron transfer flavoprotein beta subunit (etfB) K03521 fixA; electron transfer flavoprotein beta subunit D PAE3586 electron transfer flavoprotein beta subunit (etfB) K03521 fixA; electron transfer flavoprotein beta subunit D PAE0723 ferredoxin like protein K03855 fixX; ferredoxin like protein D PAE2566 siroheme-sulfite reductase gamma subunit homolog K23077 dsrC; dissimilatory sulfite reductase related protein C 99983 Lipid metabolism C 99984 Nucleotide metabolism C 99985 Amino acid metabolism C 99986 Glycan metabolism C 99987 Cofactor metabolism D PAE1759 molybdopterin-guanine dinucleotide biosynthesis protein B, conjectural K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein C 99988 Secondary metabolism D PAE2184 conserved protein associated with acetyl-CoA C-acyltransferase K07068 DUF35; scaffold protein (connect acetoacetyl-CoA thiolase and HMG-CoA synthase) C 99999 Others B B 09192 Unclassified: genetic information processing C 99973 Transcription D PAE0783 conserved helix-turn-helix protein K03627 MBF1; putative transcription factor D PAE2226 conserved hypothetical protein K03622 ssh10b; archaea-specific DNA-binding protein D PAE0790 small nuclear ribonucleoprotein homolog (Sm-like) K04796 RUXX; small nuclear ribonucleoprotein D PAE0676 small nuclear ribonucleoprotein homolog (Sm-like) K04796 RUXX; small nuclear ribonucleoprotein D PAE3132 conserved hypothetical protein K07743 K07743; transcriptional regulator D PAE3319 conserved protein with 2 CBS domains K07744 K07744; transcriptional regulator D PAE3144 conserved hypothetical protein K07745 K07745; transcriptional regulator C 99974 Translation D PAE3336 conserved hypothetical protein K07572 K07572; putative nucleotide binding protein D PAE3418 conserved hypothetical protein K07577 K07577; putative mRNA 3-end processing factor D PAE3309 mRNA 3'-end processing factor, conjectural K07577 K07577; putative mRNA 3-end processing factor D PAE0261 methylase, conjectural K07579 K07579; putative methylase D PAE0694 conserved hypothetical protein K07580 K07580; Zn-ribbon RNA-binding protein D PAE2213 conserved hypothetical protein K07581 K07581; RNA-binding protein D PAE1832 conserved protein K07581 K07581; RNA-binding protein C 99975 Protein processing D PAE2659 formate dehydrogenase protein fdhE K02380 fdhE; FdhE protein D PAE0949 hydrogenase expression/formation protein HypE K04655 hypE; hydrogenase expression/formation protein HypE D PAE0786 conserved protein with predicted RNA binding PUA domain K07398 K07398; conserved protein with predicted RNA binding PUA domain D PAE2669 conserved hypothetical protein K07402 xdhC; xanthine dehydrogenase accessory factor D PAE0749 conserved protein (nfeD homolog) K07403 nfeD; membrane-bound serine protease (ClpP class) D PAE2539 conserved hypothetical protein K07403 nfeD; membrane-bound serine protease (ClpP class) C 99976 Replication and repair D PAE1693 TBP-interacting protein TIP49 K07472 TIP49; TBP-interacting protein D PAE1523 conserved hypothetical protein K07477 K07477; translin D PAE1076 hypothetical protein K07496 K07496; putative transposase D PAE1827 paREP12 K07496 K07496; putative transposase D PAE2522 paREP12 K07496 K07496; putative transposase D PAE3530 paREP12, internal deletion K07496 K07496; putative transposase C 99979 Viral proteins C 99998 Others B B 09193 Unclassified: signaling and cellular processes C 99977 Transport C 99978 Cell growth C 99993 Cell motility C 99995 Signaling proteins D PAE3582 conserved hypothetical protein K07166 K07166; ACT domain-containing protein D PAE1625 conserved hypothetical protein K07176 K07176; putative serine/threonine protein kinase D PAE3364 conserved hypothetical protein K08482 kaiC; circadian clock protein KaiC D PAE0729 conserved hypothetical protein K08482 kaiC; circadian clock protein KaiC D PAE3044 conserved hypothetical protein K06875 PDCD5; programmed cell death protein 5 C 99992 Structural proteins C 99994 Others D PAE1386 phosphate transport system regulator, conjectural K02039 phoU; phosphate transport system protein D PAE2325 divalent cation tolerance protein, conjectural K03926 cutA; periplasmic divalent cation tolerance protein D PAE1362 nosD homolog K07218 nosD; nitrous oxidase accessory protein D PAE3465 molybdenum cofactor biosynthesis protein (moaA) K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D PAE3602 conserved hypothetical protein K07234 K07234; uncharacterized protein involved in response to NO B B 09194 Poorly characterized C 99996 General function prediction only D PAE3216 conserved hypothetical protein K06865 K06865; ATPase D PAE2298 ATP-dependent helicase K06877 K06877; DEAD/DEAH box helicase domain-containing protein D PAE2942a methionyl-tRNA synthetase beta subunit K06878 K06878; tRNA-binding protein D PAE2290 membrane protein, putative K06994 K06994; putative drug exporter of the RND superfamily D PAE1785 conserved hypothetical protein K07025 K07025; putative hydrolase of the HAD superfamily D PAE2293 hypothetical protein K07025 K07025; putative hydrolase of the HAD superfamily D PAE2947 conserved hypothetical protein K07025 K07025; putative hydrolase of the HAD superfamily D PAE1813 ABC transporter subunit, putative K09014 sufB; Fe-S cluster assembly protein SufB D PAE2050 conserved hypothetical protein K07049 K07049; TatD-related deoxyribonuclease D PAE1624 conserved hypothetical protein K07143 K07143; UPF0148 protein D PAE1635 conserved hypothetical protein K08975 K08975; putative membrane protein D PAE0653 conserved hypothetical protein K08979 K08979; putative membrane protein D PAE2526 conserved hypothetical protein K08980 K08980; putative membrane protein C 99997 Function unknown D PAE0779 conserved hypothetical protein K06869 K06869; uncharacterized protein D PAE3574 conserved hypothetical protein K06869 K06869; uncharacterized protein D PAE3507 conserved hypothetical protein K06870 K06870; uncharacterized protein D PAE0632 conserved hypothetical protein K06885 K06885; uncharacterized protein D PAE2717 conserved hypothetical protein K06888 K06888; uncharacterized protein D PAE0213 hypothetical protein K06921 K06921; uncharacterized protein D PAE1120 conserved hypothetical protein K06921 K06921; uncharacterized protein D PAE1257 conserved hypothetical protein, degenerate K06921 K06921; uncharacterized protein D PAE1306 conserved hypothetical protein K06921 K06921; uncharacterized protein D PAE1789 conserved hypothetical protein K06921 K06921; uncharacterized protein D PAE2540 conserved hypothetical protein K06921 K06921; uncharacterized protein D PAE3424 conserved hypothetical protein, degenerate K06921 K06921; uncharacterized protein D PAE2668 conserved hypothetical protein K06929 K06929; uncharacterized protein D PAE0616 metallo cofactor biosynthesis protein K06935 K06935; uncharacterized protein D PAE0858 conserved hypothetical protein K06940 K06940; uncharacterized protein D PAE2987 conserved hypothetical protein K06940 K06940; uncharacterized protein D PAE2243 conserved hypothetical protein K06953 K06953; uncharacterized protein D PAE3553 conserved hypothetical protein K06971 K06971; uncharacterized protein D PAE0636 conserved hypothetical protein K06983 K06983; uncharacterized protein D PAE3680 conserved hypothetical protein K07022 K07022; uncharacterized protein D PAE0932 conserved hypothetical protein K07033 K07033; uncharacterized protein D PAE0820 mRNA 3'-end processing factor, conjectural K07041 K07041; uncharacterized protein D PAE2829 conserved hypothetical protein K07064 K07064; uncharacterized protein D PAE2676 conserved hypothetical protein K07065 K07065; uncharacterized protein D PAE2388 hypothetical protein K07090 K07090; uncharacterized protein D PAE2552 conserved hypothetical protein K07090 K07090; uncharacterized protein D PAE2578 conserved hypothetical protein K07090 K07090; uncharacterized protein D PAE0879 conserved hypothetical protein K07092 K07092; uncharacterized protein D PAE2568 conserved hypothetical protein K07092 K07092; uncharacterized protein D PAE2565 conserved hypothetical protein K07095 K07095; uncharacterized protein D PAE3577 conserved hypothetical protein K07095 K07095; uncharacterized protein D PAE1087 conserved hypothetical protein K07096 K07096; uncharacterized protein D PAE3211 conserved hypothetical protein K07098 K07098; uncharacterized protein D PAE3049 phosphoribosyl transferase K07101 K07101; uncharacterized protein D PAE3514 xanthine-guanine phosphoribosyltransferase, conjectural K07101 K07101; uncharacterized protein D PAE1205 hypothetical protein K07108 K07108; uncharacterized protein D PAE2635 conserved hypothetical protein K07112 K07112; uncharacterized protein D PAE2255 conserved hypothetical protein K07129 K07129; uncharacterized protein D PAE0172 conserved hypothetical protein K07133 K07133; uncharacterized protein D PAE1267 conserved hypothetical protein K07133 K07133; uncharacterized protein D PAE2503 conserved hypothetical protein, frameshift K07133 K07133; uncharacterized protein D PAE0983 conserved hypothetical protein K07137 K07137; uncharacterized protein D PAE3561 conserved hypothetical protein K07158 K07158; uncharacterized protein D PAE3481 conserved hypothetical protein K08999 K08999; uncharacterized protein D PAE0766 conserved hypothetical protein K09003 K09003; uncharacterized protein D PAE2955 conserved hypothetical protein K09005 K09005; uncharacterized protein D PAE0952 conserved hypothetical protein K09120 K09120; uncharacterized protein D PAE3262 conserved hypothetical protein K09122 K09122; uncharacterized protein D PAE2307 conserved hypothetical protein K09129 K09129; uncharacterized protein D PAE2454 conserved hypothetical protein K09133 K09133; uncharacterized protein D PAE0745 conserved hypothetical protein K09141 K09141; uncharacterized protein D PAE2091 conserved hypothetical protein K09147 K09147; uncharacterized protein D PAE3212 conserved hypothetical protein K09149 K09149; uncharacterized protein D PAE0678 conserved hypothetical protein K09150 K09150; uncharacterized protein D PAE3581 conserved hypothetical protein K09157 K09157; uncharacterized protein D PAE2151 conserved hypothetical protein K09157 K09157; uncharacterized protein D PAE2323 conserved hypothetical protein K09163 K09163; uncharacterized protein D PAE1304 conserved hypothetical protein K09386 K09386; uncharacterized protein D PAE2518 conserved hypothetical protein K09715 K09715; uncharacterized protein D PAE2970 conserved hypothetical protein K09726 K09726; uncharacterized protein D PAE0681 conserved hypothetical protein K09730 K09730; uncharacterized protein D PAE0866 conserved hypothetical protein K09732 K09732; uncharacterized protein D PAE1632 conserved hypothetical protein K09736 K09736; uncharacterized protein D PAE0628 conserved hypothetical protein K09738 K09738; uncharacterized protein D PAE1976 conserved hypothetical protein K09742 K09742; uncharacterized protein D PAE2447 conserved hypothetical protein K09744 K09744; uncharacterized protein D PAE1517 hypothetical protein K09787 K09787; uncharacterized protein D PAE0597 conserved within P. aerophilum K09981 K09981; uncharacterized protein D PAE3187 conserved hypothetical protein K07220 K07220; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: October 30, 2024