+F Repair protein KO #

  DNA Repair and Recombination Proteins - Pseudomonas alkylphenolica

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D PSAKL28_14280 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D PSAKL28_45720 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E PSAKL28_10610 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E PSAKL28_06380 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E PSAKL28_03180 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E PSAKL28_11520 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E PSAKL28_23090 DEAD/DEAH box helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D PSAKL28_09370 mutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PSAKL28_32340 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PSAKL28_51500 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D PSAKL28_14280 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D PSAKL28_39090 O-6-methylguanine DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D PSAKL28_45720 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D PSAKL28_33000 alpha-ketoglutarate-dependent dioxygenase AlkB K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E PSAKL28_10610 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E PSAKL28_39080 DNA-3-methyladenine glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E PSAKL28_28430 alcohol dehydrogenase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E PSAKL28_06380 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E PSAKL28_03180 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E PSAKL28_00500 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E PSAKL28_50190 formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E PSAKL28_11520 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E PSAKL28_34720 exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E PSAKL28_51540 exodeoxyribonuclease III xth K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E PSAKL28_41630 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E PSAKL28_36680 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E PSAKL28_48610 DNA ligase B K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E PSAKL28_01060 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E PSAKL28_05220 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E PSAKL28_15070 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E PSAKL28_31780 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E PSAKL28_52200 DNA-dependent helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PSAKL28_01060 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E PSAKL28_36680 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E PSAKL28_48610 DNA ligase B K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F PSAKL28_04870 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F PSAKL28_04880 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F PSAKL28_05180 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F PSAKL28_51640 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F PSAKL28_16490 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E PSAKL28_40770 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E PSAKL28_47940 DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E PSAKL28_09850 exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E PSAKL28_42100 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E PSAKL28_05620 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E PSAKL28_40950 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E PSAKL28_00100 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E PSAKL28_42630 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E PSAKL28_06540 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E PSAKL28_14980 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E PSAKL28_03870 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E PSAKL28_35540 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E PSAKL28_06820 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E PSAKL28_36660 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E PSAKL28_36680 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E PSAKL28_48610 DNA ligase B K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E PSAKL28_52200 DNA-dependent helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PSAKL28_05240 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein E PSAKL28_30170 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E PSAKL28_46690 exodeoxyribonuclease V subunit beta K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E PSAKL28_46700 exodeoxyribonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E PSAKL28_46680 exodeoxyribonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E PSAKL28_40710 recombinase A K03553 recA; recombination protein RecA E PSAKL28_40390 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E PSAKL28_40380 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E PSAKL28_40400 Holliday junction resolvase RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E PSAKL28_49800 primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E PSAKL28_09850 exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E PSAKL28_15540 exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E PSAKL28_15550 exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E PSAKL28_40710 recombinase A K03553 recA; recombination protein RecA E PSAKL28_46270 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E PSAKL28_00110 recombination protein F RecF K03629 recF; DNA replication and repair protein RecF E PSAKL28_51730 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E PSAKL28_19770 ATPase, AAA_4 family K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E PSAKL28_41630 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E PSAKL28_10890 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E PSAKL28_36640 recombination protein RecR K06187 recR; recombination protein RecR E PSAKL28_07150 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E PSAKL28_13120 recombination associated protein K03554 rdgC; recombination associated protein RdgC E PSAKL28_40390 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E PSAKL28_40380 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E PSAKL28_40400 Holliday junction resolvase RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E PSAKL28_15540 exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E PSAKL28_15550 exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 E PSAKL28_09930 ATPase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F PSAKL28_13770 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F PSAKL28_00120 DNA gyrase subunit B GyrB K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F PSAKL28_16390 DNA topoisomerase I subunit omega K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F PSAKL28_51790 nucleoid protein HU subunit alpha K05787 hupA; DNA-binding protein HU-alpha F PSAKL28_42670 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta F PSAKL28_35650 bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F PSAKL28_41630 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F PSAKL28_10890 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F PSAKL28_36640 recombination protein RecR K06187 recR; recombination protein RecR F PSAKL28_36680 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] F PSAKL28_48610 DNA ligase B K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F PSAKL28_47210 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F PSAKL28_19570 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F PSAKL28_13830 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F PSAKL28_09850 exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F PSAKL28_38600 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F PSAKL28_05220 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F PSAKL28_15070 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D PSAKL28_40520 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D PSAKL28_19180 ultraviolet light resistance protein RulB K03502 umuC; DNA polymerase V D PSAKL28_19090 SOS response transcriptional repressor, RecA-mediated autopeptidase K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D PSAKL28_40710 recombinase A K03553 recA; recombination protein RecA D PSAKL28_16430 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D PSAKL28_32670 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D PSAKL28_07150 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D PSAKL28_32080 DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7] D PSAKL28_32660 hypothetical protein K14160 imuA; protein ImuA D PSAKL28_32650 DNA repair nucleotidyltransferase/DNA polymerase K14161 imuB; protein ImuB D PSAKL28_32640 error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D PSAKL28_05240 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D PSAKL28_30170 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D PSAKL28_40700 recombination regulator RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D PSAKL28_51280 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D PSAKL28_11960 ATP-dependent DNA helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D PSAKL28_11180 DEAD/DEAH box helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D PSAKL28_09370 mutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PSAKL28_32340 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PSAKL28_51500 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D PSAKL28_12490 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D PSAKL28_12480 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024