+E Transcription factors KO #

  Transcription Factors - Pseudoalteromonas sp. Bsw20308

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D D172_020795 DNA methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D D172_004065 AraC family transcriptional regulator K25495 nimR; AraC family transcriptional regulator, regulator of nimT D D172_009700 AraC family transcriptional regulator K13652 K13652; AraC family transcriptional regulator D D172_018705 transcriptional regulator K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] C LysR family D D172_011895 transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D D172_009065 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D D172_013140 transcriptional regulator K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC D D172_011135 transcriptional regulator K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D D172_001980 LysR family transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D D172_013585 hyalorunate lyase K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D D172_017340 LysR family transcriptional regulator K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D D172_018795 cysB; LysR family transcriptional regulator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D D172_005250 transcriptional regulator K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon D D172_010405 LysR family transcriptional regulator K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator D D172_020975 LysR family transcriptional regulator K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon D D172_002880 LysR family transcriptional regulator K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator C DeoR family C LacI family D D172_015520 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D D172_007565 regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D D172_009780 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D D172_010255 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D D172_010400 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D D172_018280 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D D172_018345 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor C GntR family D D172_015960 histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D D172_013195 fatty acid metabolism transcriptional regulator FadR K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA D D172_002345 pdhR; transcriptional regulator PdhR K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D D172_004990 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase C TetR/AcrR family D D172_019430 transcriptional repressor BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes D D172_002440 TetR family transcriptional regulator K05501 slmA; TetR/AcrR family transcriptional regulator D D172_017950 TetR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator D D172_008855 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D D172_018000 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D D172_017490 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D D172_018890 TetR family transcriptional regulator K16138 uidR; TetR/AcrR family transcriptional regulator, repressor for uid operon D D172_016710 transcriptional regulator K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator C Lrp/AsnC family D D172_007905 leucine-responsive transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D D172_013830 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D D172_017145 transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D D172_009560 AsnC family transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator C LuxR family D D172_016835 LuxR family transcriptional regulator K20918 vpsT; LuxR family transcriptional regulator, positive regulator of biofilm formation D D172_017740 LuxR family transcriptional regulator K20918 vpsT; LuxR family transcriptional regulator, positive regulator of biofilm formation C MarR family D D172_020335 MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D D172_017460 transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D D172_007610 transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D D172_012345 MerR family transcriptional regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA D D172_017685 transcriptional regulator K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR C Fur family D D172_008380 fur; ferric uptake regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D D172_003200 XRE family transcriptional regulator K09823 zur; Fur family transcriptional regulator, zinc uptake regulator C IclR family C CRP/FNR family D D172_010360 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D D172_006835 transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein C Rrf2 family D D172_015510 transcriptional regulator K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor C ArsR family D D172_017470 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D D172_016320 ArsR family transcriptional regulator K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator C XRE family C PadR family C Other families D D172_007585 penicillinase repressor K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D D172_000705 CopY family transcriptional repressor K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D D172_016810 biotin--[acetyl-CoA-carboxylase] synthetase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D D172_002150 fis; Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D D172_013455 Fis family transcriptional regulator K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D D172_016650 transcriptional regulator K12266 norR; anaerobic nitric oxide reductase transcription regulator D D172_006505 Fis family transcriptional regulator K15836 fhlA; formate hydrogenlyase transcriptional activator D D172_016280 transcriptional regulator K07729 K07729; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families D D172_015885 transcriptional regulator K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor D D172_013835 putA; transcriptional regulator K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] B Other transcription factors C BglG family C Others D D172_020285 iron-sulfur cluster-binding protein K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator D D172_004895 transcriptional regulator K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D D172_000225 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D D172_020210 transcriptional regulator K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D D172_002395 ArgR family transcriptional regulator K03402 argR; transcriptional regulator of arginine metabolism D D172_010910 HrcA family transcriptional regulator K03705 hrcA; heat-inducible transcriptional repressor D D172_005395 TyrR family transcriptional regulator K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D D172_011370 transcriptional regulator K03567 gcvR; glycine cleavage system transcriptional repressor D D172_012745 AAA family ATPase K03974 pspF; psp operon transcriptional activator D D172_012730 phage shock protein C K03973 pspC; phage shock protein C D D172_003340 hypothetical protein K03973 pspC; phage shock protein C D D172_004980 transcriptional regulator K07734 paiB; transcriptional regulator D D172_002725 hypothetical protein K07735 algH; putative transcriptional regulator D D172_014410 dksA; RNA polymerase-binding transcription factor K06204 dksA; RNA polymerase-binding transcription factor D D172_011080 conjugal transfer protein TraR K06204 dksA; RNA polymerase-binding transcription factor D D172_014355 NrdR family transcriptional regulator K07738 nrdR; transcriptional repressor NrdR D D172_014985 division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024 #
Classification taken and modified from TRANSFAC 7.0