+E Transcription factors KO
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Transcription Factors - Pseudoalteromonas sp. Bsw20308
%
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D D172_020795 DNA methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D D172_004065 AraC family transcriptional regulator K25495 nimR; AraC family transcriptional regulator, regulator of nimT
D D172_009700 AraC family transcriptional regulator K13652 K13652; AraC family transcriptional regulator
D D172_018705 transcriptional regulator K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
C LysR family
D D172_011895 transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D D172_009065 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D D172_013140 transcriptional regulator K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D D172_011135 transcriptional regulator K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D D172_001980 LysR family transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D D172_013585 hyalorunate lyase K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D D172_017340 LysR family transcriptional regulator K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D D172_018795 cysB; LysR family transcriptional regulator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D D172_005250 transcriptional regulator K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon
D D172_010405 LysR family transcriptional regulator K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
D D172_020975 LysR family transcriptional regulator K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
D D172_002880 LysR family transcriptional regulator K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
C DeoR family
C LacI family
D D172_015520 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D D172_007565 regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D D172_009780 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D D172_010255 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D D172_010400 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D D172_018280 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D D172_018345 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
C GntR family
D D172_015960 histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D D172_013195 fatty acid metabolism transcriptional regulator FadR K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D D172_002345 pdhR; transcriptional regulator PdhR K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D D172_004990 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
C TetR/AcrR family
D D172_019430 transcriptional repressor BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D D172_002440 TetR family transcriptional regulator K05501 slmA; TetR/AcrR family transcriptional regulator
D D172_017950 TetR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator
D D172_008855 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D D172_018000 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D D172_017490 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D D172_018890 TetR family transcriptional regulator K16138 uidR; TetR/AcrR family transcriptional regulator, repressor for uid operon
D D172_016710 transcriptional regulator K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
C Lrp/AsnC family
D D172_007905 leucine-responsive transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D D172_013830 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D D172_017145 transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D D172_009560 AsnC family transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
D D172_016835 LuxR family transcriptional regulator K20918 vpsT; LuxR family transcriptional regulator, positive regulator of biofilm formation
D D172_017740 LuxR family transcriptional regulator K20918 vpsT; LuxR family transcriptional regulator, positive regulator of biofilm formation
C MarR family
D D172_020335 MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D D172_017460 transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D D172_007610 transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D D172_012345 MerR family transcriptional regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
D D172_017685 transcriptional regulator K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
C Fur family
D D172_008380 fur; ferric uptake regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D D172_003200 XRE family transcriptional regulator K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
C CRP/FNR family
D D172_010360 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D D172_006835 transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
D D172_015510 transcriptional regulator K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
C ArsR family
D D172_017470 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D D172_016320 ArsR family transcriptional regulator K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator
C XRE family
C PadR family
C Other families
D D172_007585 penicillinase repressor K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D D172_000705 CopY family transcriptional repressor K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D D172_016810 biotin--[acetyl-CoA-carboxylase] synthetase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D D172_002150 fis; Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D D172_013455 Fis family transcriptional regulator K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D D172_016650 transcriptional regulator K12266 norR; anaerobic nitric oxide reductase transcription regulator
D D172_006505 Fis family transcriptional regulator K15836 fhlA; formate hydrogenlyase transcriptional activator
D D172_016280 transcriptional regulator K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
D D172_015885 transcriptional regulator K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D D172_013835 putA; transcriptional regulator K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D D172_020285 iron-sulfur cluster-binding protein K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator
D D172_004895 transcriptional regulator K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D D172_000225 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D D172_020210 transcriptional regulator K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D D172_002395 ArgR family transcriptional regulator K03402 argR; transcriptional regulator of arginine metabolism
D D172_010910 HrcA family transcriptional regulator K03705 hrcA; heat-inducible transcriptional repressor
D D172_005395 TyrR family transcriptional regulator K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D D172_011370 transcriptional regulator K03567 gcvR; glycine cleavage system transcriptional repressor
D D172_012745 AAA family ATPase K03974 pspF; psp operon transcriptional activator
D D172_012730 phage shock protein C K03973 pspC; phage shock protein C
D D172_003340 hypothetical protein K03973 pspC; phage shock protein C
D D172_004980 transcriptional regulator K07734 paiB; transcriptional regulator
D D172_002725 hypothetical protein K07735 algH; putative transcriptional regulator
D D172_014410 dksA; RNA polymerase-binding transcription factor K06204 dksA; RNA polymerase-binding transcription factor
D D172_011080 conjugal transfer protein TraR K06204 dksA; RNA polymerase-binding transcription factor
D D172_014355 NrdR family transcriptional regulator K07738 nrdR; transcriptional repressor NrdR
D D172_014985 division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0