+F Repair protein KO
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DNA Repair and Recombination Proteins - Penicillium digitatum
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D PDIP_62750 hypothetical protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E PDIP_56890 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E PDIP_45790 Mismatch-specific thymine-DNA glycosylase, putative K20813 TDG; thymine-DNA glycosylase [EC:3.2.2.29]
E PDIP_54700 DNA N-glycosylase, putative K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
E PDIP_10340 DNA repair protein Ntg1, putative K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E PDIP_88670 DNA (Apurinic or apyrimidinic site) lyase, endon uclease K10771 APEX1; AP endonuclease 1 [EC:3.1.11.2]
E PDIP_00830 DNA lyase Apn2 K10772 APEX2; AP endonuclease 2 [EC:3.1.11.2]
D Long Patch-BER factors
E DNA polymerase delta complex
F PDIP_37770 DNA polymerase K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F PDIP_87440 DNA polymerase delta subunit 2, putative K02328 POLD2; DNA polymerase delta subunit 2
F PDIP_38810 DNA polymerase delta subunit 4, putative K03505 POLD4; DNA polymerase delta subunit 4
E DNA polymerase epsilon complex
F PDIP_76080 DNA polymerase epsilon catalytic subunit A K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
F PDIP_56850 DNA polymerase epsilon subunit B, putative K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
E PDIP_00930 Flap endonuclease 1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E PDIP_84190 DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Short Patch-BER factors
D Other BER factors
E PDIP_63600 Tyrosyl-DNA phosphodiesterase, putative K10862 TDP1; tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
E PDIP_80490 hypothetical protein K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E PDIP_68650 DNA 3'-phosphatase Tpp1, putative K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78]
E PDIP_03420 Poly(ADP)-ribose polymerase PARP, putative K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
F PDIP_16780 Rad4 family protein K10838 XPC; xeroderma pigmentosum group C-complementing protein
F PDIP_37210 hypothetical protein K10838 XPC; xeroderma pigmentosum group C-complementing protein
F PDIP_22740 UV excision repair protein (RadW), putative K10839 RAD23; UV excision repair protein RAD23
E Cul4-DDB2 complex
F PDIP_22460 Ubiquitin ligase subunit HrtA, putative K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F PDIP_39260 UV-damaged DNA binding protein, putative K10610 DDB1; DNA damage-binding protein 1
E NER4 complex
F PDIP_01920 DNA repair protein Rad7, protein K15082 RAD7; DNA repair protein RAD7
F PDIP_01910 DNA excision repair protein Rad16, putative K15083 RAD16; DNA repair protein RAD16
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
F PDIP_66280 DNA-directed RNA polymerase K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F PDIP_55940 DNA-directed RNA polymerase K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F PDIP_35060 RNA polymerase II subunit 3 K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
F PDIP_06700 Polymerase (RNA) II (DNA directed) polypeptide D K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F PDIP_66930 hypothetical protein K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F PDIP_19870 DNA-directed RNA polymerase I, II, and III subunit Rpb6 K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F PDIP_03820 RNA polymerase II subunit 7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F PDIP_60630 DNA-directed RNA polymerases i, ii, and iii 145 kDa polypeptide K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F PDIP_84690 DNA-directed RNA polymerase subunit K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F PDIP_56710 DNA-directed RNA polymerases N/8 kDa subunit superfamily K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F PDIP_82960 hypothetical protein K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
F PDIP_86130 Hypothetical protein K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E Cul4-CSA complex
F PDIP_22460 Ubiquitin ligase subunit HrtA, putative K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F PDIP_39260 UV-damaged DNA binding protein, putative K10610 DDB1; DNA damage-binding protein 1
F PDIP_71680 WD repeat protein K10570 ERCC8; DNA excision repair protein ERCC-8
E Other TCR factor
F PDIP_16010 DNA repair protein Rhp26/Rad26, putative K10841 ERCC6; DNA excision repair protein ERCC-6
F PDIP_22130 Zinc finger protein, putative K25829 ELOF1; transcription elongation factor 1
D TFIIH complex
E PDIP_49050 hypothetical protein K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E PDIP_67210 TFIIH complex helicase Rad3, putative K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E PDIP_43030 RNA polymerase II transcription factor related protein K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E PDIP_26180 RNA polymerase TFIIH complex subunit Ssl1, putative K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E PDIP_60270 Transcription factor TFIIH subunit Tfb4, putative K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E PDIP_15600 TFIIH and nucleotide excision repair factor 3 complexes subunit (Tfb2), putative K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E PDIP_01800 hypothetical protein K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E PDIP_53110 Cyclin Ccl1, putative K06634 CCNH; cyclin H
E PDIP_21600 CDK-activating kinase assembly factor MAT1 K10842 MNAT1; CDK-activating kinase assembly factor MAT1
D RPA (replication factor A)
E PDIP_56740 hypothetical protein K07466 RFA1; replication factor A1
E PDIP_39500 putative replication factor-a protein K10739 RFA2; replication factor A2
D Other NER factors
E PDIP_47690 DNA repair protein rad14 K10847 XPA; DNA-repair protein complementing XP-A cells
E PDIP_14190 Mating-type switch/DNA repair protein Swi10/Rad10, putative K10849 ERCC1; DNA excision repair protein ERCC-1
E PDIP_61810 DNA repair protein RAD1, putative K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E PDIP_70480 DNA excision repair protein Rad2 K10846 ERCC5; DNA excision repair protein ERCC-5
E PDIP_84190 DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E PDIP_03750 DNA repair/transcription protein, putative K15075 MET18; DNA repair/transcription protein MET18/MMS19
E PDIP_88810 hypothetical protein K03869 CUL3; cullin 3
E PDIP_38770 Transcriptional elongation regulator Elc1/Elongin C, putative K03872 ELOC; elongin-C
E PDIP_85220 RNA polymerase II transcription factor SIII (Elongin) subunit A, putative K15077 ELA1; elongin-A
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E PDIP_76360 DNA mismatch repair protein Msh2, putative K08735 MSH2; DNA mismatch repair protein MSH2
E PDIP_58340 DNA mismatch repair protein Msh3 K08736 MSH3; DNA mismatch repair protein MSH3
E PDIP_88090 DNA mismatch repair protein Msh6, putative K08737 MSH6; DNA mismatch repair protein MSH6
D MutL homologs
E PDIP_60120 DNA mismatch repair protein Mlh1, putative K08734 MLH1; DNA mismatch repair protein MLH1
E PDIP_79270 DNA mismatch repair protein (Pms1), putative K10858 PMS2; DNA mismatch repair protein PMS2
E PDIP_13680 DNA mismatch repair protein (Mlh3), putative K08739 MLH3; DNA mismatch repair protein MLH3
D DNA polymerase delta complex
E PDIP_37770 DNA polymerase K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E PDIP_87440 DNA polymerase delta subunit 2, putative K02328 POLD2; DNA polymerase delta subunit 2
E PDIP_38810 DNA polymerase delta subunit 4, putative K03505 POLD4; DNA polymerase delta subunit 4
D RPA (replication factor A)
E PDIP_56740 hypothetical protein K07466 RFA1; replication factor A1
E PDIP_39500 putative replication factor-a protein K10739 RFA2; replication factor A2
D RFC (replication factor C)
E PDIP_89370 DNA replication factor C subunit Rfc1, putative K10754 RFC1; replication factor C subunit 1
E PDIP_18690 DNA replication factor C subunit Rfc4, putative K10755 RFC2_4; replication factor C subunit 2/4
E PDIP_00300 Protein transport membrane glycoprotein Sec20, putative K10755 RFC2_4; replication factor C subunit 2/4
E PDIP_89340 DNA replication factor C subunit Rfc5, putative K10756 RFC3_5; replication factor C subunit 3/5
E PDIP_47760 hypothetical protein K10756 RFC3_5; replication factor C subunit 3/5
D Other MMR factors
E PDIP_08350 Exonuclease, putative K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E PDIP_84190 DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E PDIP_43620 Hypothetical protein K24755 WDR76; WD repeat-containing protein 76
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
E PDIP_39810 Meiotic recombination protein Mre11 K10865 MRE11; double-strand break repair protein MRE11
E PDIP_44880 DNA repair protein Rad50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
E PDIP_39810 Meiotic recombination protein Mre11 K10865 MRE11; double-strand break repair protein MRE11
E PDIP_44880 DNA repair protein Rad50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D BRCA complex
E PDIP_06050 DNA repair protein RAD51, putative K04482 RAD51; DNA repair protein RAD51
D RecA family proteins
E PDIP_06050 DNA repair protein RAD51, putative K04482 RAD51; DNA repair protein RAD51
E PDIP_27210 DNA repair protein (Rad57), putative K10958 RAD57; DNA repair protein RAD57
D Rad52 family proteins
E PDIP_13160 RAD52 DNA repair protein RADC K10873 RAD52; DNA repair and recombination protein RAD52
D Rad54 family proteins
E PDIP_45320 DsDNA-dependent ATPase Rad54, putative K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E PDIP_05530 DsDNA-dependent ATPase (Rad54b), putative K10877 RAD54B; DNA repair and recombination protein RAD54B [EC:5.6.2.-]
D RecQ family DNA helicases
E PDIP_37300 RecQ family helicase MusN K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
D Bloom's syndrome complex (BTR)
E PDIP_37300 RecQ family helicase MusN K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E PDIP_71020 DNA topoisomerase K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E PDIP_08590 hypothetical protein K15364 NCE4; RecQ-mediated genome instability protein 1
D RPA (replication factor A)
E PDIP_56740 hypothetical protein K07466 RFA1; replication factor A1
E PDIP_39500 putative replication factor-a protein K10739 RFA2; replication factor A2
D Protein phosphatase 4
E PDIP_52470 hypothetical protein K17491 SMEK; protein phosphatase 4 regulatory subunit 3
D AP-5 complex
D SMC5-SMC6 complex
E PDIP_61630 Structural maintenance of chromosome complex subunit SmcA K22803 SMC5; structural maintenance of chromosomes protein 5
E PDIP_01510 DNA repair protein Rad18, putative K22804 SMC6; structural maintenance of chromosomes protein 6
E PDIP_67560 DNA repair protein Nse1, putative K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27]
E PDIP_36540 Chromosomal organization and DNA repair protein Mms21, putative K22756 NSMCE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-]
E PDIP_51630 Nuclear protein Qri2/Nse4, putative K22825 NSMCE4; non-structural maintenance of chromosomes element 4
D Other HR factors
E PDIP_59030 hypothetical protein K10882 EME1; crossover junction endonuclease EME1 [EC:3.1.22.-]
E PDIP_74520 DNA repair protein Mus81, putative K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-]
E PDIP_06110 hypothetical protein K10881 SHFM1; 26 proteasome complex subunit DSS1
E PDIP_22800 DNA repair protein Swi5/Sae3, putative K10991 SWI5; DNA repair protein Swi5/Sae3
E PDIP_66260 DNA repair protein Dds20/Mei5, putative K10992 SFR1; Swi5-dependent recombination DNA repair protein 1
E PDIP_48880 hypothetical protein K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E PDIP_23560 Rad2-like endonuclease, putative K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E PDIP_33000 Histone acetylase complex subunit MRG15-2 K11339 MORF4L1; mortality factor 4-like protein 1
E PDIP_43470 AAA family ATPase, putative K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-]
E PDIP_10440 Zinc metallopeptidase, putative K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E PDIP_83540 DEAD box helicase Mph1, putative K14635 MPH1; ATP-dependent DNA helicase MPH1 [EC:5.6.2.4]
C NHEJ (non-homologous end-joining)
D DNA-PK complex
E PDIP_52550 Ku seventy K10884 XRCC6; ATP-dependent DNA helicase 2 subunit 1
E PDIP_73590 ATP-dependent DNA helicase II subunit 2 K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2
D MRX complex
E PDIP_39810 Meiotic recombination protein Mre11 K10865 MRE11; double-strand break repair protein MRE11
E PDIP_44880 DNA repair protein Rad50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D DNA Ligase 4 complex
E PDIP_59620 DNA ligase 4 K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
E PDIP_48370 hypothetical protein K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
D X-family DNA polymerases
E PDIP_31470 DNA polymerase POL4, putative K10981 POL4; DNA polymerase IV [EC:2.7.7.7]
E PDIP_84340 Terminal deoxynucleotidyl transferase, putative K10981 POL4; DNA polymerase IV [EC:2.7.7.7]
D Other NHEJ factors
E PDIP_80490 hypothetical protein K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E PDIP_20600 DNA repair protein, putative K10887 DCLRE1C; DNA cross-link repair 1C protein [EC:3.1.-.-]
E PDIP_36640 hypothetical protein K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
E PDIP_39240 hypothetical protein K11511 APITD1; centromere protein S
D Bloom's syndrome complex (BTR)
E PDIP_37300 RecQ family helicase MusN K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E PDIP_71020 DNA topoisomerase K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E PDIP_08590 hypothetical protein K15364 NCE4; RecQ-mediated genome instability protein 1
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
E PDIP_54720 hypothetical protein K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E PDIP_06050 DNA repair protein RAD51, putative K04482 RAD51; DNA repair protein RAD51
E PDIP_78840 hypothetical protein K11137 TELO2; telomere length regulation protein
E PDIP_59980 WD repeat protein K15361 WDR48; WD repeat-containing protein 48
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
E PDIP_39020 hypothetical protein K23314 WRAP53; telomerase Cajal body protein 1
E PDIP_53130 WD repeat protein K24752 WDR70; WD repeat-containing protein 70
E PDIP_43620 Hypothetical protein K24755 WDR76; WD repeat-containing protein 76
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D PDIP_17780 hypothetical protein K03509 POLH; DNA polymerase eta [EC:2.7.7.7]
D PDIP_50230 Sister chromatid cohesion protein (Eso1), putative K03509 POLH; DNA polymerase eta [EC:2.7.7.7]
D PDIP_55140 DNA-directed polymerase kappa, putative K03511 POLK; DNA polymerase kappa [EC:2.7.7.7]
D PDIP_79660 DNA damage repair protein Mus42, putative K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-]
C B-family DNA polymerases
D PDIP_09300 DNA polymerase K02350 REV3L; DNA polymerase zeta [EC:2.7.7.7]
C A-family DNA polymerase
C Rad6 epistasis group
D PDIP_46490 Ubiquitin-conjugating enzyme E2 2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D PDIP_37810 DNA repair protein (RadR), putative K10627 RAD18; E3 ubiquitin-protein ligase RAD18 [EC:2.3.2.27]
D PDIP_82210 DNA repair protein rad5 K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D PDIP_50440 SNF2 family helicase, putative K15711 SMARCA3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
D PDIP_86050 hypothetical protein K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D PDIP_61910 Ubiquitin carrier protein K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
C Other TLS factors
D PDIP_43570 HMG box-containing protein C19G7.04 K26957 GCNA; germ cell nuclear acidic protein
B Check point factors
C Rad9-Hus1-Rad1 complex
D PDIP_64120 DNA repair protein rad9, putative K10994 RAD9A; cell cycle checkpoint control protein RAD9A [EC:3.1.11.2]
D PDIP_17210 hypothetical protein K10903 HUS1; HUS1 checkpoint protein
D PDIP_43370 DNA repair protein Rad1, putative K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C HRAD17(Rad24)-RFC complex
D PDIP_42080 Cell cycle checkpoint protein Rad17, putative K06662 HRAD17; cell cycle checkpoint protein
D PDIP_18690 DNA replication factor C subunit Rfc4, putative K10755 RFC2_4; replication factor C subunit 2/4
D PDIP_00300 Protein transport membrane glycoprotein Sec20, putative K10755 RFC2_4; replication factor C subunit 2/4
D PDIP_89340 DNA replication factor C subunit Rfc5, putative K10756 RFC3_5; replication factor C subunit 3/5
D PDIP_47760 hypothetical protein K10756 RFC3_5; replication factor C subunit 3/5
C Rad17-Mec3-Ddc1 complex
D PDIP_43370 DNA repair protein Rad1, putative K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C FPC (fork protection complex)
D PDIP_15880 DNA repair protein (Tof1), putative K10997 TIMELESS; replication fork protection complex subunit TIMELESS/Tof1/Swi1
D PDIP_14800 hypothetical protein K10998 TIPIN; replication fork protection complex subunit TIPIN/Csm3/Swi3
D PDIP_07700 hypothetical protein K11272 MRC1; mediator of replication checkpoint protein 1
C Triple T complex
D PDIP_78840 hypothetical protein K11137 TELO2; telomere length regulation protein
D PDIP_84200 hypothetical protein K20403 TTI1; TELO2-interacting protein 1
C BAG6-UBL4A-GET4 complex
D PDIP_47670 hypothetical protein K23388 UBL4; ubiquitin-like protein 4
D PDIP_18710 hypothetical protein K23387 GET4; golgi to ER traffic protein 4
C Other check point factors
D PDIP_14760 Inositol kinase kinase (UvsB), putative K06640 ATR; serine/threonine-protein kinase ATR [EC:2.7.11.1]
D PDIP_58220 Serine/threonine-protein kinase tel1 K04728 ATM; serine-protein kinase ATM [EC:2.7.11.1]
D PDIP_45050 Serine/threonine protein kinase, putative K02216 CHEK1; serine/threonine-protein kinase CHEK1 [EC:2.7.11.1]
D PDIP_01830 Cell-cycle checkpoint protein kinase, putative K06641 CHEK2; serine/threonine-protein kinase CHEK2 [EC:2.7.11.1]
D PDIP_88760 Cell cycle control protein tyrosine phosphatase Mih1, putative K02555 MIH1; M-phase inducer tyrosine phosphatase [EC:3.1.3.48]
D PDIP_72160 14-3-3 family protein ArtA, putative K06630 YWHAE; 14-3-3 protein epsilon
D PDIP_68570 14-3-3 family protein K06630 YWHAE; 14-3-3 protein epsilon
D PDIP_14380 Protein kinase, putative K03114 SWE1; mitosis inhibitor protein kinase SWE1 [EC:2.7.11.1]
D PDIP_75040 Forkhead transcription factor Fkh1/2, putative K24664 FKH; forkhead protein FKH
D PDIP_76010 Vacuolar sorting ATPase Vps4, putative K12196 VPS4; vacuolar protein-sorting-associated protein 4
D PDIP_44940 hypothetical protein K25059 SDE2; replication stress response regulator SDE2
B Other factors with a suspected DNA repair function
C DNA polymerases
D PDIP_88740 DNA polymerase V, putative K02331 POL5; DNA polymerase phi [EC:2.7.7.7]
C Nucleases
D PDIP_04690 DNA repair protein Pso2/Snm1, putative K15340 DCLRE1A; DNA cross-link repair 1A protein
D PDIP_67280 hypothetical protein K17815 EXO5; exonuclease V [EC:3.1.-.-]
D PDIP_54470 Nuclease PA3, putative K05986 NUCS; nuclease S1 [EC:3.1.30.1]
C Helicases
D PDIP_71200 DNA excision repair protein (Rad26L), putative K20098 ERCC6L2; DNA excision repair protein ERCC-6-like 2 [EC:5.6.2.-]
C PSO4 complex
D PDIP_81820 Cell cycle control protein (Cwf8), putative K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D PDIP_87140 Pre-mRNA-splicing factor cef1 K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D PDIP_69350 BCAS2 family protein K12861 BCAS2; pre-mRNA-splicing factor SPF27
D PDIP_31170 Pre-mRNA-splicing factor prp46 K12862 PLRG1; pleiotropic regulator 1
C Modulation of nucleotide pools
D PDIP_25520 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D PDIP_83740 Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D PDIP_13460 Ribonucleoside-diphosphate reductase K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D PDIP_59320 Ribonucleotide reductase small subunit RnrA, putative K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D PDIP_62750 hypothetical protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E PDIP_56890 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E PDIP_13290 DNA-3-methyladenine glycosylase, putative K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E PDIP_42800 Formamidopyrimidine-DNA glycosylase, putative K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E PDIP_10340 DNA repair protein Ntg1, putative K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D RecJ
D DNA ligase
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E PDIP_71360 ATP-depentend DNA helicase, putative K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
D Other MMR factors
E PDIP_71360 ATP-depentend DNA helicase, putative K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
D RecFOR pathway proteins
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
E Facilitator
E Supressor
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D PDIP_25520 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D PDIP_83740 Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
C Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024