+F Repair protein KO #

  DNA Repair and Recombination Proteins - Pseudomonas entomophila

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D PSEEN3169 ogt; methylated-DNA--protein-cysteine methyltransferase (6-O-methylguanine-DNA methyltransferase) (O-6-methylguanine-DNA-alkyltransferase) K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D PSEEN0881 phrB; deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E PSEEN4312 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E PSEEN4832 putative DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E PSEEN5199 mutY; A/G specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E PSEEN1214 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E PSEEN2644 conserved hypothetical protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D PSEEN4474 putative hydrolase MutT/nudix family/Thiamine monophosphate synthase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PSEEN2524 putative hydrolase, MutT/nudix family K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PSEEN2060 conserved hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PSEEN5433 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D PSEEN3169 ogt; methylated-DNA--protein-cysteine methyltransferase (6-O-methylguanine-DNA methyltransferase) (O-6-methylguanine-DNA-alkyltransferase) K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D PSEEN0845 ada; O6-methylguanine-DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D PSEEN0881 phrB; deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D PSEEN2739 putative photolyase K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] D PSEEN2825 alkB; oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions, repair of alkylated DNA K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E PSEEN4312 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E PSEEN0843 putative DNA-3-methyladenine glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E PSEEN2569 putative DNA-3-methyladenine glycosylase II K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E PSEEN4832 putative DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E PSEEN5199 mutY; A/G specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E PSEEN0018 tag; 3-methyl-adenine DNA glycosylase I, constitutive K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E PSEEN0287 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E PSEEN1214 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E PSEEN5437 putative catabolite repression control protein Crc K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E PSEEN2076 xthA; exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E PSEEN4244 recJ; ss DNA specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E PSEEN5027 putative DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E PSEEN1769 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E PSEEN0076 polA; DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E PSEEN0519 uvrA; DNA excision repair enzyme subunit, with UvrBC K03701 uvrA; excinuclease ABC subunit A E PSEEN2620 putative excinuclease ABC, UvrA-like K03701 uvrA; excinuclease ABC subunit A E PSEEN1636 uvrB; exonuclease ABC subunit B (ATP-dependent DNA excision repair enzyme UvrAC) K03702 uvrB; excinuclease ABC subunit B E PSEEN3449 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E PSEEN5504 uvrD; DNA-dependent ATPase I and helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PSEEN0076 polA; DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7] E PSEEN5027 putative DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E PSEEN1769 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F PSEEN0482 rpoB; RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F PSEEN0483 rpoC; RNA polymerase, beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F PSEEN0514 rpoA; RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F PSEEN5446 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F PSEEN3715 mfd; transcription-repair coupling protein K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E PSEEN4187 mutS; methyl-directed mismatch repair, recognize exocyclic adducts of guanosine K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E PSEEN4945 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E PSEEN1150 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E PSEEN4397 xseA; exonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E PSEEN0602 putative exonuclease VII, small subunit XseB K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E PSEEN4205 dnaE; DNA polymerase III, alpha chain K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E PSEEN0002 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E PSEEN4444 holC; DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E PSEEN4815 holA; DNA polymerase III, delta subunit, probably ATP hydrolase K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E PSEEN1625 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E PSEEN3558 dnaQ; DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E PSEEN5130 putative exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E PSEEN1788 dnaX; DNA polymerase III, tau and gamma subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E PSEEN5027 putative DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E PSEEN1769 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E PSEEN5504 uvrD; DNA-dependent ATPase I and helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PSEEN0521 ssb; ssDNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E PSEEN0692 recB; exonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E PSEEN0691 recC; exonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E PSEEN0693 recD; exonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E PSEEN4128 recA; DNA strand exchange and recombination protein with protease and nuclease activity. K03553 recA; recombination protein RecA E PSEEN4093 ruvA; holliday junction helicase subunit A K03550 ruvA; holliday junction DNA helicase RuvA E PSEEN4092 ruvB; Holliday junction helicase, subunit B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E PSEEN4094 ruvC; holliday junction nuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E PSEEN0324 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E PSEEN1150 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E PSEEN1721 sbcC; exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E PSEEN1722 sbcD; exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E PSEEN4128 recA; DNA strand exchange and recombination protein with protease and nuclease activity. K03553 recA; recombination protein RecA E PSEEN4770 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E PSEEN0003 recF; DNA replication, recombinaison and repair protein K03629 recF; DNA replication and repair protein RecF E PSEEN5455 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E PSEEN4244 recJ; ss DNA specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E PSEEN4288 recO; Recombination protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E PSEEN1790 recR; recombination protein recR K06187 recR; recombination protein RecR E PSEEN0776 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E PSEEN1411 putative recombination associated protein RdgC K03554 rdgC; recombination associated protein RdgC E PSEEN4093 ruvA; holliday junction helicase subunit A K03550 ruvA; holliday junction DNA helicase RuvA E PSEEN4092 ruvB; Holliday junction helicase, subunit B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E PSEEN4094 ruvC; holliday junction nuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E PSEEN1721 sbcC; exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E PSEEN1722 sbcD; exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 E PSEEN1155 conserved hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E PSEEN2761 Ku protein K10979 ku; DNA end-binding protein Ku E PSEEN2767 putative DNA ligase, ATP-dependent K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F PSEEN1487 gyrA; DNA gyrase, subunit A, type II topoisomerase K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F PSEEN0004 gyrB; DNA gyrase, subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F PSEEN3725 topA; DNA topoisomerase type I, omega protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F PSEEN2283 putative DNA topoisomerase IB K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F PSEEN5458 hupA; DNA-binding protein HU-alpha K05787 hupA; DNA-binding protein HU-alpha F PSEEN4448 hupN; DNA-binding protein HU form N K03530 hupB; DNA-binding protein HU-beta F PSEEN1871 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F PSEEN4244 recJ; ss DNA specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F PSEEN4288 recO; Recombination protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F PSEEN1790 recR; recombination protein recR K06187 recR; recombination protein RecR F PSEEN5027 putative DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] F PSEEN1769 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F PSEEN4862 fis; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F PSEEN1969 ihfA; integration host factor (IHF), alpha subunit, DNA-binding protein, DNA replication K04764 ihfA; integration host factor subunit alpha F PSEEN1493 himD; integration host factor (IHF),beta subunit, site specific recombination K05788 ihfB; integration host factor subunit beta E Supressor F PSEEN1150 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F PSEEN3922 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F PSEEN1997 putative ATP-dependent DNA helicase, RecQ-like K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F PSEEN0519 uvrA; DNA excision repair enzyme subunit, with UvrBC K03701 uvrA; excinuclease ABC subunit A F PSEEN2620 putative excinuclease ABC, UvrA-like K03701 uvrA; excinuclease ABC subunit A F PSEEN1636 uvrB; exonuclease ABC subunit B (ATP-dependent DNA excision repair enzyme UvrAC) K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D PSEEN4107 dinP; DNA polymerase IV, damage-inducible protein P K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D PSEEN4128 recA; DNA strand exchange and recombination protein with protease and nuclease activity. K03553 recA; recombination protein RecA D PSEEN3721 lexA; transcriptional repressor for SOS response (signal peptidase of LexA family) K01356 lexA; repressor LexA [EC:3.4.21.88] D PSEEN2412 putative LexA repressor 2 K01356 lexA; repressor LexA [EC:3.4.21.88] D PSEEN0776 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D PSEEN3365 polB; DNA polymerase II and 3'-> 5' exonuclease K02336 polB; DNA polymerase II [EC:2.7.7.7] D PSEEN2413 conserved hypothetical protein K14160 imuA; protein ImuA D PSEEN2414 Putative nucleotidyltransferase/DNA polymerase involved in DNA repair K14161 imuB; protein ImuB D PSEEN2415 probable DNA polymerase III, alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D PSEEN0521 ssb; ssDNA-binding protein K03111 ssb; single-strand DNA-binding protein D PSEEN4127 recX; regulatory protein, inhibitor of RecA recombinase and coprotease activities K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D PSEEN5410 rep; ATP-dependent DNA helicase K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D PSEEN1273 putative ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D PSEEN1182 putative ATP-dependent DNA helicase Lhr K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D PSEEN4474 putative hydrolase MutT/nudix family/Thiamine monophosphate synthase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PSEEN2524 putative hydrolase, MutT/nudix family K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PSEEN2060 conserved hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PSEEN5433 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D PSEEN1337 nrdA; ribonucleoside diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D PSEEN1335 nrdB; ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024