+D GENES KO
#
KEGG Orthology (KO) - Persephonella marina
%
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A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:pmx00010]
D PERMA_1557 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D PERMA_1298 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D PERMA_0268 fbp; fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D PERMA_1749 conserved hypothetical protein K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10]
D PERMA_1046 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D PERMA_0470 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D PERMA_1047 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (phosphoglyceromutase) (pgam) (bpg-dependent pgam) (dpgm) K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D PERMA_1636 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D PERMA_0022 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D PERMA_0568 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D PERMA_0560 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PERMA_0529 pyruvate synthase subunit PorA (Pyruvate oxidoreductasealpha chain) (POR) (Pyruvic-ferredoxin oxidoreductase subunit alpha) K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D PERMA_0528 pyruvate synthase subunit PorB (Pyruvate oxidoreductasebeta chain) (POR) (Pyruvic-ferredoxin oxidoreductase subunit beta) K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D PERMA_0531 pyruvate/ketoisovalerate oxidoreductases common subunit gamma K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D PERMA_0530 pyruvate synthase subunit PorD (Pyruvate oxidoreductasedelta chain) (POR) (Pyruvic-ferredoxin oxidoreductase subunit delta) K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D PERMA_1135 2-oxoglutarate ferredoxin oxidoreductase alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D PERMA_1136 orB; alpha oxoglutarate ferredoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D PERMA_0836 acsA_2; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PERMA_0597 acsA_1; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
C 00020 Citrate cycle (TCA cycle) [PATH:pmx00020]
D PERMA_1528 citrate synthase 2 (Citrate synthase II) K01647 CS; citrate synthase [EC:2.3.3.1]
D PERMA_1714 ATP-citrate synthase (ATP-citrate (pro-S-)-lyase)(Citrate cleavage enzyme) K15230 aclA; ATP-citrate lyase alpha-subunit [EC:2.3.3.8]
D PERMA_1715 ATP-citrate synthase (ATP-citrate (pro-S-)-lyase)(Citrate cleavage enzyme) K15231 aclB; ATP-citrate lyase beta-subunit [EC:2.3.3.8]
D PERMA_1441 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D PERMA_1716 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D PERMA_0560 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PERMA_1135 2-oxoglutarate ferredoxin oxidoreductase alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D PERMA_1136 orB; alpha oxoglutarate ferredoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D PERMA_1134 sucD; succinate-CoA ligase, alpha subunit subfamily K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D PERMA_1133 succinyl-CoA synthetase beta chain (SCS-alpha)(Vegetative protein 63) (VEG63) K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D PERMA_0359 fumarate reductase, iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D PERMA_0358 succinate dehydrogenase, subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D PERMA_1131 L(+)-tartrate dehydratase subunit alpha (L-TTD alpha) K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D PERMA_1132 fumB; fumarate hydratase, class I K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D PERMA_1130 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D PERMA_1635 accC_2; acetyl-CoA carboxylase, biotin carboxylase subunit K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1]
D PERMA_0625 oadA; oxaloacetate decarboxylase alpha subunit K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D PERMA_0529 pyruvate synthase subunit PorA (Pyruvate oxidoreductasealpha chain) (POR) (Pyruvic-ferredoxin oxidoreductase subunit alpha) K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D PERMA_0528 pyruvate synthase subunit PorB (Pyruvate oxidoreductasebeta chain) (POR) (Pyruvic-ferredoxin oxidoreductase subunit beta) K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D PERMA_0531 pyruvate/ketoisovalerate oxidoreductases common subunit gamma K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D PERMA_0530 pyruvate synthase subunit PorD (Pyruvate oxidoreductasedelta chain) (POR) (Pyruvic-ferredoxin oxidoreductase subunit delta) K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
C 00030 Pentose phosphate pathway [PATH:pmx00030]
D PERMA_1557 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D PERMA_0635 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D PERMA_1704 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D PERMA_0911 putative transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D PERMA_1103 rpiB; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D PERMA_1841 deoC; deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D PERMA_1288 ribose-Phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D PERMA_1579 putative hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D PERMA_1749 conserved hypothetical protein K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10]
D PERMA_0268 fbp; fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D PERMA_1298 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C 00040 Pentose and glucuronate interconversions [PATH:pmx00040]
D PERMA_1666 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D PERMA_0522 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D PERMA_0635 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D PERMA_0896 L-fuculose phosphate aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
C 00051 Fructose and mannose metabolism [PATH:pmx00051]
D PERMA_2004 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D PERMA_2002 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D PERMA_0896 L-fuculose phosphate aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
D PERMA_1578 glucosyl-3-phosphoglycerate phosphatase K07026 E3.1.3.70; mannosyl-3-phosphoglycerate phosphatase [EC:3.1.3.70]
D PERMA_1298 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D PERMA_0268 fbp; fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D PERMA_1749 conserved hypothetical protein K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10]
D PERMA_1046 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D PERMA_1103 rpiB; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
C 00052 Galactose metabolism [PATH:pmx00052]
D PERMA_1708 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D PERMA_2007 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D PERMA_1357 VI polysaccharide biosynthesis protein VipB/tviC K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D PERMA_0522 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D PERMA_1298 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C 00053 Ascorbate and aldarate metabolism [PATH:pmx00053]
D PERMA_1666 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D PERMA_0403 NAD-dependent epimerase/dehydratase family protein K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
C 00500 Starch and sucrose metabolism [PATH:pmx00500]
D PERMA_0522 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D PERMA_1993 rfbF; glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D PERMA_0017 alpha,alpha-trehalose-phosphate synthase [UDP-forming] (Trehalose-6-phosphate synthase) (UDP-glucose-glucosephosphateglucosyltransferase) K16055 TPS; trehalose 6-phosphate synthase/phosphatase [EC:2.4.1.15 3.1.3.12]
D PERMA_1557 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:pmx00520]
D PERMA_1982 glmS; glutamine-fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D PERMA_1394 glmU; UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D PERMA_0090 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D PERMA_0621 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D PERMA_1624 neuC; UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing K18429 legG; GDP/UDP-N,N'-diacetylbacillosamine 2-epimerase (hydrolysing) [EC:3.2.1.184]
D PERMA_1627 neuB; N-acetylneuraminate synthase K18430 legI; N,N'-diacetyllegionaminate synthase [EC:2.5.1.101]
D PERMA_0522 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D PERMA_1666 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D PERMA_1708 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D PERMA_2007 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D PERMA_1357 VI polysaccharide biosynthesis protein VipB/tviC K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D PERMA_0403 NAD-dependent epimerase/dehydratase family protein K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D PERMA_1557 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D PERMA_2004 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D PERMA_2002 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D PERMA_1629 DegT/DnrJ/EryC1/StrS aminotransferase K13010 per; perosamine synthetase [EC:2.6.1.102]
D PERMA_0060 transcriptional regulator K13010 per; perosamine synthetase [EC:2.6.1.102]
D PERMA_1993 rfbF; glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D PERMA_1995 rfbG; CDP-glucose 4,6-dehydratase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45]
D PERMA_1996 DegT/DnrJ/EryC1/StrS aminotransferase family enzyme K12452 ascC; CDP-4-dehydro-6-deoxyglucose reductase, E1 [EC:1.17.1.1]
D PERMA_1994 CDP-abequose synthase K12453 rfbS; CDP-paratose synthetase [EC:1.1.1.342]
D PERMA_1997 CDP-paratose 2-epimerase (CDP-tyvelose 2-epimerase) K12454 rfbE; CDP-paratose 2-epimerase [EC:5.1.3.10]
C 00620 Pyruvate metabolism [PATH:pmx00620]
D PERMA_0836 acsA_2; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PERMA_0597 acsA_1; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PERMA_0529 pyruvate synthase subunit PorA (Pyruvate oxidoreductasealpha chain) (POR) (Pyruvic-ferredoxin oxidoreductase subunit alpha) K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D PERMA_0528 pyruvate synthase subunit PorB (Pyruvate oxidoreductasebeta chain) (POR) (Pyruvic-ferredoxin oxidoreductase subunit beta) K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D PERMA_0531 pyruvate/ketoisovalerate oxidoreductases common subunit gamma K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D PERMA_0530 pyruvate synthase subunit PorD (Pyruvate oxidoreductasedelta chain) (POR) (Pyruvic-ferredoxin oxidoreductase subunit delta) K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D PERMA_1135 2-oxoglutarate ferredoxin oxidoreductase alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D PERMA_1136 orB; alpha oxoglutarate ferredoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D PERMA_0560 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PERMA_0022 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D PERMA_0043 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D PERMA_1083 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D PERMA_1507 accC_1; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D PERMA_1848 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D PERMA_1850 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D PERMA_0506 glyoxylate reductase (Glycolate reductase) K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28]
D PERMA_1508 beta-lactamase domain protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D PERMA_1685 maeB; NADP-dependent malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D PERMA_1635 accC_2; acetyl-CoA carboxylase, biotin carboxylase subunit K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1]
D PERMA_0625 oadA; oxaloacetate decarboxylase alpha subunit K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D PERMA_1130 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D PERMA_1131 L(+)-tartrate dehydratase subunit alpha (L-TTD alpha) K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D PERMA_1132 fumB; fumarate hydratase, class I K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D PERMA_0568 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D PERMA_0913 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D PERMA_1079 2-isopropylmalate synthase/homocitrate synthase family protein K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:pmx00630]
D PERMA_0836 acsA_2; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PERMA_0597 acsA_1; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PERMA_1130 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D PERMA_1528 citrate synthase 2 (Citrate synthase II) K01647 CS; citrate synthase [EC:2.3.3.1]
D PERMA_1441 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D PERMA_1763 D-lactate dehydrogenase K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14]
D PERMA_0921 oxido/reductase iron sulfur protein K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14]
D PERMA_1639 phosphoglycolate phosphatase (PGPase) (PGP) K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D PERMA_0642 glutamate synthase [NADPH] large chain (nadph-gogat) K00284 GLU; glutamate synthase (ferredoxin) [EC:1.4.7.1]
D PERMA_1586 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PERMA_1104 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D PERMA_0560 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PERMA_0108 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D PERMA_1579 putative hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D PERMA_0576 formate dehydrogenase alpha chain K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
C 00640 Propanoate metabolism [PATH:pmx00640]
D PERMA_0836 acsA_2; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PERMA_0597 acsA_1; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PERMA_0560 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PERMA_0529 pyruvate synthase subunit PorA (Pyruvate oxidoreductasealpha chain) (POR) (Pyruvic-ferredoxin oxidoreductase subunit alpha) K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D PERMA_0528 pyruvate synthase subunit PorB (Pyruvate oxidoreductasebeta chain) (POR) (Pyruvic-ferredoxin oxidoreductase subunit beta) K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D PERMA_0531 pyruvate/ketoisovalerate oxidoreductases common subunit gamma K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D PERMA_0530 pyruvate synthase subunit PorD (Pyruvate oxidoreductasedelta chain) (POR) (Pyruvic-ferredoxin oxidoreductase subunit delta) K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D PERMA_0043 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D PERMA_1083 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D PERMA_1507 accC_1; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D PERMA_1848 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D PERMA_1133 succinyl-CoA synthetase beta chain (SCS-alpha)(Vegetative protein 63) (VEG63) K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D PERMA_1134 sucD; succinate-CoA ligase, alpha subunit subfamily K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D PERMA_1441 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
C 00650 Butanoate metabolism [PATH:pmx00650]
D PERMA_0359 fumarate reductase, iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D PERMA_0358 succinate dehydrogenase, subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D PERMA_0529 pyruvate synthase subunit PorA (Pyruvate oxidoreductasealpha chain) (POR) (Pyruvic-ferredoxin oxidoreductase subunit alpha) K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D PERMA_0528 pyruvate synthase subunit PorB (Pyruvate oxidoreductasebeta chain) (POR) (Pyruvic-ferredoxin oxidoreductase subunit beta) K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D PERMA_0531 pyruvate/ketoisovalerate oxidoreductases common subunit gamma K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D PERMA_0530 pyruvate synthase subunit PorD (Pyruvate oxidoreductasedelta chain) (POR) (Pyruvic-ferredoxin oxidoreductase subunit delta) K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D PERMA_1135 2-oxoglutarate ferredoxin oxidoreductase alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D PERMA_1136 orB; alpha oxoglutarate ferredoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D PERMA_0158 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PERMA_0157 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D PERMA_0269 putative 2,3-butanediol dehydrogenase K00004 BDH; (R,R)-butanediol dehydrogenase / meso-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.4 1.1.1.- 1.1.1.303]
C 00660 C5-Branched dibasic acid metabolism [PATH:pmx00660]
D PERMA_0158 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PERMA_0157 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D PERMA_1133 succinyl-CoA synthetase beta chain (SCS-alpha)(Vegetative protein 63) (VEG63) K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D PERMA_1134 sucD; succinate-CoA ligase, alpha subunit subfamily K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D PERMA_1717 leuC; 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D PERMA_0505 leuD; 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D PERMA_0387 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:pmx00562]
D PERMA_0228 inositol-1-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D PERMA_0334 Myo-inositol-1-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4]
D PERMA_1920 myo-inositol-1-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4]
D PERMA_1921 glucose-1-phosphate thymidylyltransferase K23992 K23992; 1L-myo-inositol 1-phosphate cytidylyltransferase / CDP-L-myo-inositol myo-inositolphosphotransferase [EC:2.7.7.74 2.7.8.34]
D PERMA_1046 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:pmx00190]
D PERMA_1411 nuoA; NADH-quinone oxidoreductase, a subunit K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D PERMA_1412 NADH-quinone oxidoreductase chain b (nadh dehydrogenasei, chain b) (ndh-1, chain b) K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D PERMA_1413 NADH-quinone oxidoreductase subunit c/d (nadhdehydrogenase i subunit c/d) (ndh-1 subunit c/d) (Nuo3/nuo4) K13378 nuoCD; NADH-quinone oxidoreductase subunit C/D [EC:7.1.1.2]
D PERMA_0144 NADH-quinone oxidoreductase subunit c/d (nadhdehydrogenase i subunit c/d) (ndh-1 subunit c/d) K13378 nuoCD; NADH-quinone oxidoreductase subunit C/D [EC:7.1.1.2]
D PERMA_0960 NADH-quinone oxidoreductase subunit e (nadhdehydrogenase i subunit e) (ndh-1 subunit e) K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D PERMA_0961 NADH-quinone oxidoreductase subunit f (nadhdehydrogenase i subunit f) (ndh-1 subunit f) K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D PERMA_1641 NADH dehydrogenase i chain g K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D PERMA_1414 NADH-quinone oxidoreductase subunit h (nadhdehydrogenase i subunit h) (ndh-1 subunit h) K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D PERMA_1415 NADH-quinone oxidoreductase subunit i K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D PERMA_0143 NADH-quinone oxidoreductase subunit i 2 (nadhdehydrogenase i subunit i 2) (ndh-1 subunit i 2) K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D PERMA_1416 NADH-quinone oxidoreductase subunit j (nadhdehydrogenase i subunit j) (ndh-1 subunit j) K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D PERMA_1417 NADH-quinone oxidoreductase subunit k (nadhdehydrogenase i subunit k) (ndh-1 subunit k) K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D PERMA_1418 nuoL; NADH-quinone oxidoreductase, l subunit K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D PERMA_1419 NADH-quinone oxidoreductase subunit m (nadhdehydrogenase i subunit m) (ndh-1 subunit m) K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D PERMA_1420 nuoN; NADH-quinone oxidoreductase, n subunit K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D PERMA_1748 NADH dehydrogenase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D PERMA_0359 fumarate reductase, iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D PERMA_0358 succinate dehydrogenase, subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D PERMA_0586 petA; ubiquinol-Cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D PERMA_0587 cytochrome B K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D PERMA_0588 ubiquinol Cytochrome c oxidoreductase, cytochrome c1 subunit K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D PERMA_0289 cytoChrome c oxidase, subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9]
D PERMA_0288 cytochrome c oxidase, subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]
D PERMA_0411 putative cytochrome c oxidase, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D PERMA_0412 cytochrome c oxidase, Cbb3-type, subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D PERMA_0947 cytochrome c552 K08738 CYC; cytochrome c
D PERMA_0949 cytoChrome c-551 (Cytochrome c551) (Cytochrome C8) K08738 CYC; cytochrome c
D PERMA_1254 cytoChrome c-552 (Cytochrome c552) K08738 CYC; cytochrome c
D PERMA_1256 cytoChrome c-552 (Cytochrome c552) K08738 CYC; cytochrome c
D PERMA_1263 cytochrome c family protein K08738 CYC; cytochrome c
D PERMA_1541 cytochrome c K08738 CYC; cytochrome c
D PERMA_1446 cytochrome c552 K08738 CYC; cytochrome c
D PERMA_0182 atpA_1; ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D PERMA_1698 atpA_2; ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D PERMA_0184 atpD_1; ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D PERMA_1696 atpD_2; ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D PERMA_0183 atpG_1; ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D PERMA_1697 atpG_2; ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D PERMA_0181 atpH; ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D PERMA_1695 atpC_2; ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D PERMA_1050 atpC_1; ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D PERMA_1701 atpB_2; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D PERMA_0191 atpB_1; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D PERMA_1699 ATP synthase B/B' CF(0) family K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D PERMA_0179 putative ATP synthase F0 subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D PERMA_0180 putative ATP synthase F0 subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D PERMA_1700 ATP synthase C chain, sodium ion specific (Lipid-bindingprotein) K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D PERMA_0193 ATP synthase C chain (Lipid-binding protein) K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D PERMA_0038 V-type ATP synthase alpha chain (V-type ATPase subunitA) K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1]
D PERMA_0039 V-type ATP synthase beta chain (V-type ATPase subunitB) K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B
D PERMA_0040 V-type ATPase, D subunit K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D
D PERMA_0036 ATP synthase, subunit F K02122 ATPVF; V/A-type H+/Na+-transporting ATPase subunit F
D PERMA_0032 conserved hypothetical protein K02107 ATPVG; V/A-type H+/Na+-transporting ATPase subunit G/H
D PERMA_0034 V-type sodium ATP synthase subunit I K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I
D PERMA_0035 putative ATP synthase subunit C K02124 ATPVK; V/A-type H+/Na+-transporting ATPase subunit K
D PERMA_1945 ppa; inorganic diphosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms
C 00720 Carbon fixation pathways in prokaryotes [PATH:pmx00720]
D PERMA_0529 pyruvate synthase subunit PorA (Pyruvate oxidoreductasealpha chain) (POR) (Pyruvic-ferredoxin oxidoreductase subunit alpha) K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D PERMA_0528 pyruvate synthase subunit PorB (Pyruvate oxidoreductasebeta chain) (POR) (Pyruvic-ferredoxin oxidoreductase subunit beta) K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D PERMA_0531 pyruvate/ketoisovalerate oxidoreductases common subunit gamma K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D PERMA_0530 pyruvate synthase subunit PorD (Pyruvate oxidoreductasedelta chain) (POR) (Pyruvic-ferredoxin oxidoreductase subunit delta) K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D PERMA_0568 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D PERMA_1635 accC_2; acetyl-CoA carboxylase, biotin carboxylase subunit K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1]
D PERMA_0625 oadA; oxaloacetate decarboxylase alpha subunit K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D PERMA_1130 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D PERMA_1131 L(+)-tartrate dehydratase subunit alpha (L-TTD alpha) K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D PERMA_1132 fumB; fumarate hydratase, class I K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D PERMA_0359 fumarate reductase, iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D PERMA_0358 succinate dehydrogenase, subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D PERMA_1387 sdhA; succinate dehydrogenase, flavoprotein subunit K18556 frdA; NADH-dependent fumarate reductase subunit A [EC:1.3.1.6]
D PERMA_1134 sucD; succinate-CoA ligase, alpha subunit subfamily K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D PERMA_1133 succinyl-CoA synthetase beta chain (SCS-alpha)(Vegetative protein 63) (VEG63) K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D PERMA_1135 2-oxoglutarate ferredoxin oxidoreductase alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D PERMA_1136 orB; alpha oxoglutarate ferredoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D PERMA_1716 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D PERMA_1441 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D PERMA_1714 ATP-citrate synthase (ATP-citrate (pro-S-)-lyase)(Citrate cleavage enzyme) K15230 aclA; ATP-citrate lyase alpha-subunit [EC:2.3.3.8]
D PERMA_1715 ATP-citrate synthase (ATP-citrate (pro-S-)-lyase)(Citrate cleavage enzyme) K15231 aclB; ATP-citrate lyase beta-subunit [EC:2.3.3.8]
D PERMA_1040 citrate synthase K15234 ccl; citryl-CoA lyase [EC:4.1.3.34]
D PERMA_0043 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D PERMA_1083 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D PERMA_1507 accC_1; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D PERMA_1848 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D PERMA_1712 bifunctional protein fold protein K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D PERMA_0068 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D PERMA_0106 cooS; carbon-monoxide dehydrogenase, catalytic subunit K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D PERMA_0836 acsA_2; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PERMA_0597 acsA_1; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
C 00680 Methane metabolism [PATH:pmx00680]
D PERMA_0576 formate dehydrogenase alpha chain K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D PERMA_0106 cooS; carbon-monoxide dehydrogenase, catalytic subunit K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D PERMA_1104 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D PERMA_1579 putative hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D PERMA_1636 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D PERMA_1130 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D PERMA_1749 conserved hypothetical protein K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10]
D PERMA_0268 fbp; fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D PERMA_1298 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D PERMA_0836 acsA_2; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PERMA_0597 acsA_1; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PERMA_0529 pyruvate synthase subunit PorA (Pyruvate oxidoreductasealpha chain) (POR) (Pyruvic-ferredoxin oxidoreductase subunit alpha) K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D PERMA_0528 pyruvate synthase subunit PorB (Pyruvate oxidoreductasebeta chain) (POR) (Pyruvic-ferredoxin oxidoreductase subunit beta) K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D PERMA_0531 pyruvate/ketoisovalerate oxidoreductases common subunit gamma K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D PERMA_0530 pyruvate synthase subunit PorD (Pyruvate oxidoreductasedelta chain) (POR) (Pyruvic-ferredoxin oxidoreductase subunit delta) K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D PERMA_0568 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D PERMA_1047 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (phosphoglyceromutase) (pgam) (bpg-dependent pgam) (dpgm) K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D PERMA_0333 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D PERMA_0343 phosphoglycerate mutase family protein K22305 psp; phosphoserine phosphatase [EC:3.1.3.3]
D PERMA_1158 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (phosphoglyceromutase) (pgam) (bpg-dependent pgam) (dpgm) K22305 psp; phosphoserine phosphatase [EC:3.1.3.3]
C 00910 Nitrogen metabolism [PATH:pmx00910]
D PERMA_0890 major facilitator family transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D PERMA_0888 periplasmic nitrate reductase K00367 narB; ferredoxin-nitrate reductase [EC:1.7.7.2]
D PERMA_0298 napA; periplasmic nitrate reductase, large subunit K02567 napA; nitrate reductase (cytochrome) [EC:1.9.6.1]
D PERMA_0301 napB; periplasmic nitrate reductase, diheme cytochrome c subunit K02568 napB; nitrate reductase (cytochrome), electron transfer subunit
D PERMA_0891 ferredoxin--nitrite reductase K00366 nirA; ferredoxin-nitrite reductase [EC:1.7.7.1]
D PERMA_0306 nitrite reductase (Cytochrome cd1) (Cytochromeoxidase) (Hydroxylamine reductase) K15864 nirS; nitrite reductase (NO-forming) / hydroxylamine reductase [EC:1.7.2.1 1.7.99.1]
D PERMA_0314 nitric oxide reductase, cytochrome B subunit K04561 norB; nitric oxide reductase subunit B [EC:1.7.2.5]
D PERMA_1257 nitrous-oxide reductase K00376 nosZ; nitrous-oxide reductase [EC:1.7.2.4]
D PERMA_0130 2-nitropropane dioxygenase K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16]
D PERMA_1586 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PERMA_0627 gltA; glutamate synthase (NADPH), homotetrameric K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D PERMA_0642 glutamate synthase [NADPH] large chain (nadph-gogat) K00284 GLU; glutamate synthase (ferredoxin) [EC:1.4.7.1]
D PERMA_0116 carbonate dehydratase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
D PERMA_1443 carbonic anhydrase (Carbonate dehydratase) K01674 cah; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:pmx00920]
D PERMA_1983 sat; sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D PERMA_1989 cysC; adenylylsulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D PERMA_1987 cysQ; 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D PERMA_0455 phosphoesterase, RecJ domain protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
D PERMA_0519 phosphoadenosine phosphosulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D PERMA_1889 sulfur oxidation protein SoxA K17222 soxA; L-cysteine S-thiosulfotransferase [EC:2.8.5.2]
D PERMA_1893 sulfur oxidation protein SoxX K17223 soxX; L-cysteine S-thiosulfotransferase [EC:2.8.5.2]
D PERMA_1891 sulfur oxidation protein SoxY K17226 soxY; sulfur-oxidizing protein SoxY
D PERMA_1890 sulphur oxidation protein SoxZ K17227 soxZ; sulfur-oxidizing protein SoxZ
D PERMA_1888 5'-nucleotidase, C-domain protein K17224 soxB; S-sulfosulfanyl-L-cysteine sulfohydrolase [EC:3.1.6.20]
D PERMA_0693 putative [NiFe] hydrogenasegamma subunit K16951 asrB; anaerobic sulfite reductase subunit B
D PERMA_0517 ferredoxin-sulfite reductase K00392 sir; sulfite reductase (ferredoxin) [EC:1.8.7.1]
D PERMA_1461 sulfide-quinone reductase K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4]
D PERMA_0499 putative sulfide quinone reductase K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4]
D PERMA_0653 rhodanese domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:pmx00061]
D PERMA_0043 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D PERMA_1083 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D PERMA_1507 accC_1; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D PERMA_1848 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D PERMA_0508 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
D PERMA_0648 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D PERMA_0761 3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 1 (3-oxoacyl-[acyl-carrier-protein] synthase III protein 1) (Beta-ketoacyl-ACP synthase III 1) (KAS III 1) (bFabH1) K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D PERMA_0509 fabF; beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D PERMA_0507 fabG; 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PERMA_1399 3-oxoacyl-[acyl-carrier-protein] reductase (3-ketoacyl-acyl carrier protein reductase) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PERMA_1468 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D PERMA_1874 enoyl-[acyl-carrier-protein] reductase [NADH] (nadh-dependent enoyl-acp reductase) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D PERMA_1167 long-chain-fatty-acid CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PERMA_1924 2-succinylbenzoate--CoA ligase (OSB-CoA synthetase) (o-succinylbenzoyl-CoA synthetase) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation
D PERMA_1167 long-chain-fatty-acid CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PERMA_1924 2-succinylbenzoate--CoA ligase (OSB-CoA synthetase) (o-succinylbenzoyl-CoA synthetase) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:pmx00561]
D PERMA_1579 putative hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D PERMA_0763 plsX; fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D PERMA_0615 plsY; acyl-phosphate glycerol 3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D PERMA_0081 2-acylglycerophosphoethanolamine acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 00564 Glycerophospholipid metabolism [PATH:pmx00564]
D PERMA_1482 glycerol-3-phosphate dehydrogenase [NAD(P)+] (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase) (NAD(P)H-dependentdihydroxyacetone-phosphate reductase) K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D PERMA_0615 plsY; acyl-phosphate glycerol 3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D PERMA_0081 2-acylglycerophosphoethanolamine acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D PERMA_0341 glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D PERMA_0378 cdsA_1; phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D PERMA_0616 pgsA_1; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D PERMA_0146 pgpA; phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
D PERMA_1929 pgsA_2; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K08744 CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism
C 01040 Biosynthesis of unsaturated fatty acids
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:pmx00230]
D PERMA_1288 ribose-Phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D PERMA_1001 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D PERMA_1388 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D PERMA_0010 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D PERMA_1489 purT; phosphoribosylglycinamide formyltransferase 2 K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21]
D PERMA_0287 purL; phosphoribosylformylglycinamidine synthase II K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3]
D PERMA_0433 purS; phosphoribosylformylglycinamidine synthase, PurS protein K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3]
D PERMA_0435 purQ; phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D PERMA_0012 purM; phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D PERMA_0641 purE; phosphoribosylaminoimidazole carboxylase, catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D PERMA_0523 purC; phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D PERMA_0606 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D PERMA_1500 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D PERMA_1380 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D PERMA_1847 conserved hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D PERMA_1567 hpt; hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D PERMA_0224 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D PERMA_1729 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D PERMA_0076 rdgB; non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D PERMA_0029 guaA; GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D PERMA_1421 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D PERMA_0859 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D PERMA_0551 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D PERMA_0549 ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D PERMA_0297 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D PERMA_0437 deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1]
D PERMA_0614 GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D PERMA_0219 exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D PERMA_0988 adenylate cyclase K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D PERMA_0260 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D PERMA_0122 conserved hypothetical protein K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16]
D PERMA_1217 adenylate kinase (ATP-AMP transphosphorylase) K00939 adk; adenylate kinase [EC:2.7.4.3]
D PERMA_0014 ATP binding protein K06928 NTPCR; nucleoside-triphosphatase [EC:3.6.1.15]
D PERMA_1365 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D PERMA_1752 histidine triad K19710 E2.7.7.53; ATP adenylyltransferase [EC:2.7.7.53]
D PERMA_1989 cysC; adenylylsulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D PERMA_1983 sat; sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
C 00240 Pyrimidine metabolism [PATH:pmx00240]
D PERMA_0858 carbamoyl-phosphate synthase large chain, N-section (Carbamoyl-phosphate synthetase ammonia chain) K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D PERMA_0883 conserved hypothetical protein K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D PERMA_1121 carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate synthetase ammonia chain) K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D PERMA_1285 carA; carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D PERMA_0629 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D PERMA_0638 dihydroorotase (DHOase) K01465 URA4; dihydroorotase [EC:3.5.2.3]
D PERMA_0405 dihydroorotate dehydrogenase, catalytic subunit (dihydroorotate oxidase) (dhodehase) (dhodase) (dhod) K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14]
D PERMA_1386 dihydroorotate dehydrogenase electron transfer subunit K02823 pyrDII; dihydroorotate dehydrogenase electron transfer subunit
D PERMA_0284 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D PERMA_0426 pyrF; orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D PERMA_0233 pyrH; UMP kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D PERMA_1729 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D PERMA_1365 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D PERMA_0596 pyrG; CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D PERMA_0150 cmk; cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D PERMA_1380 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D PERMA_1366 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D PERMA_0122 conserved hypothetical protein K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16]
D PERMA_0297 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D PERMA_1644 dcd; deoxycytidine triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D PERMA_1053 deoxycytidine triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D PERMA_0859 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D PERMA_0551 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D PERMA_0549 ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D PERMA_0169 tmk; thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D PERMA_1648 thymidylate synthase ThyX (TS) (TSase) K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:pmx00250]
D PERMA_0163 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D PERMA_0497 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D PERMA_1950 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D PERMA_0095 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D PERMA_0260 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D PERMA_0606 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D PERMA_0629 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D PERMA_0627 gltA; glutamate synthase (NADPH), homotetrameric K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D PERMA_1586 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PERMA_0858 carbamoyl-phosphate synthase large chain, N-section (Carbamoyl-phosphate synthetase ammonia chain) K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D PERMA_0883 conserved hypothetical protein K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D PERMA_1121 carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate synthetase ammonia chain) K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D PERMA_1285 carA; carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D PERMA_0435 purQ; phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D PERMA_1982 glmS; glutamine-fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D PERMA_1001 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:pmx00260]
D PERMA_1634 asparate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4]
D PERMA_0373 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D PERMA_1054 homoserine dehydrogenase (HDH) K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D PERMA_1085 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D PERMA_0223 thrC_1; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D PERMA_0257 thrC_2; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D PERMA_1104 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D PERMA_1579 putative hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D PERMA_1047 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (phosphoglyceromutase) (pgam) (bpg-dependent pgam) (dpgm) K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D PERMA_0333 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D PERMA_0343 phosphoglycerate mutase family protein K22305 psp; phosphoserine phosphatase [EC:3.1.3.3]
D PERMA_1158 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (phosphoglyceromutase) (pgam) (bpg-dependent pgam) (dpgm) K22305 psp; phosphoserine phosphatase [EC:3.1.3.3]
D PERMA_0560 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PERMA_0108 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D PERMA_1327 trpA; tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D PERMA_0573 trpB; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D PERMA_0647 conserved hypothetical protein K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:pmx00270]
D PERMA_1670 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D PERMA_1689 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D PERMA_0400 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D PERMA_0559 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D PERMA_1668 speD_1; S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D PERMA_1687 speD_2; S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D PERMA_1438 speE; spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D PERMA_1847 conserved hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D PERMA_1735 5-methylthioadenosine/S-adenosylhomocysteine deaminase K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28]
D PERMA_0933 mtnP; methylthioadenosine phosphorylase K19696 mtiP; 5'-methylthioinosine phosphorylase [EC:2.4.2.44]
D PERMA_0495 mtnA; S-methyl-5-thioribose-1-phosphate isomerase K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23]
D PERMA_1872 mtnB; methylthioribulose-1-phosphate dehydratase K08964 mtnB; methylthioribulose-1-phosphate dehydratase [EC:4.2.1.109]
D PERMA_0408 putative ribulose bisphosphate carboxylase (RuBisCO) K08965 mtnW; 2,3-diketo-5-methylthiopentyl-1-phosphate enolase [EC:5.3.2.5]
D PERMA_0409 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase (HK-MTPenyl-1-P phosphatase) K08966 mtnX; 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase [EC:3.1.3.87]
D PERMA_0829 mtnC; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase K09880 mtnC; enolase-phosphatase E1 [EC:3.1.3.77]
D PERMA_1873 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase (5-methylthio-3-oxo-1-penten-1,2-diol dioxygenase) (DHK-MTPenedioxygenase) K08967 mtnD; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [EC:1.13.11.53 1.13.11.54]
D PERMA_0251 putative modification methylase FnuDI K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D PERMA_0556 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D PERMA_1634 asparate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4]
D PERMA_0373 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D PERMA_1054 homoserine dehydrogenase (HDH) K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D PERMA_0221 ferredoxin K23976 K23976; L-aspartate semialdehyde sulfurtransferase ferredoxin
D PERMA_1229 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D PERMA_0163 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D PERMA_0653 rhodanese domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D PERMA_1130 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D PERMA_1581 cysM; cysteine synthase B K12339 cysM; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144]
D PERMA_0333 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
C 00280 Valine, leucine and isoleucine degradation [PATH:pmx00280]
D PERMA_1229 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D PERMA_0560 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PERMA_1078 3-hydroxyisobutyrate dehydrogenase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:pmx00290]
D PERMA_1717 leuC; 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D PERMA_0505 leuD; 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D PERMA_0387 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D PERMA_0158 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PERMA_0157 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D PERMA_0155 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D PERMA_0558 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D PERMA_1229 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D PERMA_0913 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D PERMA_1079 2-isopropylmalate synthase/homocitrate synthase family protein K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:pmx00300]
D PERMA_1054 homoserine dehydrogenase (HDH) K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D PERMA_1634 asparate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4]
D PERMA_0373 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D PERMA_0058 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D PERMA_0454 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D PERMA_0117 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (Tetrahydrodipicolinate N-succinyltransferase) (THPsuccinyltransferase) (Tetrahydropicolinate succinylase) K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D PERMA_0177 acetylornithine aminotransferase (acoat) K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D PERMA_0275 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D PERMA_1018 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D PERMA_0766 dapC; succinyldiaminopimelate transaminase K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83]
D PERMA_0884 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D PERMA_1389 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D PERMA_1882 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) (UDP-MurNAc-tripeptidesynt K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D PERMA_0469 udp-murnac-pentapeptide sythetase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:pmx00310]
D PERMA_0560 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PERMA_0346 L-lysine 2,3-aminomutase (KAM) (LAM) K01843 kamA; lysine 2,3-aminomutase [EC:5.4.3.2]
C 00220 Arginine biosynthesis [PATH:pmx00220]
D PERMA_0628 argF; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D PERMA_1950 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D PERMA_0095 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D PERMA_0435 purQ; phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D PERMA_1586 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PERMA_0163 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D PERMA_1160 bifunctional protein argHA K00619 argA; amino-acid N-acetyltransferase [EC:2.3.1.1]
D PERMA_1638 argJ; glutamate N-acetyltransferase/amino-acid acetyltransferase K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
D PERMA_1517 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D PERMA_0431 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D PERMA_0177 acetylornithine aminotransferase (acoat) K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
C 00330 Arginine and proline metabolism [PATH:pmx00330]
D PERMA_0487 creatininase K01470 E3.5.2.10; creatinine amidohydrolase [EC:3.5.2.10]
D PERMA_1472 hydantoin utilization protein A (ORF2) K01473 hyuA; N-methylhydantoinase A [EC:3.5.2.14]
D PERMA_1470 5-oxoprolinase (5-oxo-L-prolinase) (Pyroglutamase) (5-OPase) K01474 hyuB; N-methylhydantoinase B [EC:3.5.2.14]
D PERMA_0148 agmatine deiminase (Agmatine iminohydrolase) K10536 aguA; agmatine deiminase [EC:3.5.3.12]
D PERMA_0013 N-carbamoylputrescine amidase K12251 aguB; N-carbamoylputrescine amidase [EC:3.5.1.53]
D PERMA_1438 speE; spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D PERMA_1668 speD_1; S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D PERMA_1687 speD_2; S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D PERMA_0589 proC; pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D PERMA_1075 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D PERMA_1682 proA; glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D PERMA_0163 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism [PATH:pmx00340]
D PERMA_1393 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D PERMA_0344 putative histidyl-tRNA synthetase K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit
D PERMA_0366 histidine biosynthesis bifunctional protein hisIE K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31]
D PERMA_1646 hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D PERMA_1328 hisH; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D PERMA_0864 hisF; imidazoleglycerol phosphate synthase, cyclase subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D PERMA_0544 hisB; imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D PERMA_1926 hisC_2; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PERMA_1118 hisC_1; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PERMA_1846 hisD; histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
C 00350 Tyrosine metabolism [PATH:pmx00350]
D PERMA_0163 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D PERMA_1926 hisC_2; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PERMA_1118 hisC_1; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00360 Phenylalanine metabolism [PATH:pmx00360]
D PERMA_0163 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D PERMA_1926 hisC_2; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PERMA_1118 hisC_1; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PERMA_0962 katG; catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21]
C 00380 Tryptophan metabolism [PATH:pmx00380]
D PERMA_0560 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PERMA_0962 katG; catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:pmx00400]
D PERMA_1749 conserved hypothetical protein K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10]
D PERMA_1476 3-dehydroquinate synthase K11646 K11646; 3-dehydroquinate synthase II [EC:1.4.1.24]
D PERMA_0321 aroD; 3-dehydroquinate dehydratase, type I K03785 aroD; 3-dehydroquinate dehydratase I [EC:4.2.1.10]
D PERMA_1072 aroE; shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D PERMA_1404 aroK; shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D PERMA_1722 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D PERMA_0190 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D PERMA_0276 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D PERMA_1560 para-aminobenzoate synthase glutamine amidotransferase component II (ADC synthase) K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D PERMA_1396 trpD; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D PERMA_1239 putative glycosyl transferase family, a/b domain protein K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D PERMA_0501 trpF; N-(5'phosphoribosyl)anthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D PERMA_0936 trpC; indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D PERMA_1327 trpA; tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D PERMA_0573 trpB; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D PERMA_0647 conserved hypothetical protein K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D PERMA_0230 pheA; chorismate mutase/prephenate dehydratase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D PERMA_1281 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D PERMA_0163 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D PERMA_1926 hisC_2; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PERMA_1118 hisC_1; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:pmx00410]
D PERMA_1512 panD; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D PERMA_1115 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
C 00430 Taurine and hypotaurine metabolism
D PERMA_0102 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D PERMA_1251 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:pmx00450]
D PERMA_1670 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D PERMA_1689 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D PERMA_1983 sat; sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D PERMA_0959 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:pmx00460]
D PERMA_0102 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D PERMA_1251 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D PERMA_1104 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:pmx00470]
D PERMA_0620 D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D PERMA_1252 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D PERMA_0435 purQ; phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D PERMA_0995 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D PERMA_0624 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D PERMA_1018 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D PERMA_0884 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D PERMA_1389 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:pmx00480]
D PERMA_0102 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D PERMA_1251 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D PERMA_0104 carboxylate-amine ligase Francci3_0693 K06048 gshA; glutamate---cysteine ligase / carboxylate-amine ligase [EC:6.3.2.2 6.3.-.-]
D PERMA_1904 cytosol aminopeptidase (Leucine aminopeptidase) (LAP)(Leucyl aminopeptidase) K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D PERMA_1716 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D PERMA_1438 speE; spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis [PATH:pmx00540]
D PERMA_0355 lpxA; acyl-(acyl-carrier-protein)-UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D PERMA_1097 lpxC; UDP-3-O-(3-hydroxymyristoyl) N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D PERMA_1743 lpxD; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D PERMA_0354 conserved hypothetical protein K09949 lpxI; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D PERMA_1354 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D PERMA_1268 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D PERMA_0165 arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D PERMA_0417 kdsA; 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D PERMA_2019 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D PERMA_0579 kdsB; 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D PERMA_1352 putative bifunctional glycosyltransferase/methyltransferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D PERMA_1057 putative lipid A biosynthesis acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D PERMA_1830 gmhA; phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D PERMA_0432 rfaE_1; bifunctional protein RfaE, domain I K21344 rfaE1; D-glycero-beta-D-manno-heptose-7-phosphate kinase [EC:2.7.1.167]
D PERMA_0686 D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D PERMA_1930 rfaE_2; bifunctional protein RfaE, domain II K21345 rfaE2; D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase [EC:2.7.7.70]
D PERMA_1084 rfaD; ADP-glyceromanno-heptose 6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D PERMA_0045 ADP-heptose:LPS heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:pmx00541]
D PERMA_0522 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D PERMA_2007 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D PERMA_1357 VI polysaccharide biosynthesis protein VipB/tviC K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D PERMA_1666 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D PERMA_0403 NAD-dependent epimerase/dehydratase family protein K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D PERMA_1747 UDP-glucuronic acid decarboxylase 1 (UDP-glucuronatedecarboxylase 1) (UXS-1) K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D PERMA_1993 rfbF; glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D PERMA_1995 rfbG; CDP-glucose 4,6-dehydratase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45]
D PERMA_1996 DegT/DnrJ/EryC1/StrS aminotransferase family enzyme K12452 ascC; CDP-4-dehydro-6-deoxyglucose reductase, E1 [EC:1.17.1.1]
D PERMA_1994 CDP-abequose synthase K12453 rfbS; CDP-paratose synthetase [EC:1.1.1.342]
D PERMA_1997 CDP-paratose 2-epimerase (CDP-tyvelose 2-epimerase) K12454 rfbE; CDP-paratose 2-epimerase [EC:5.1.3.10]
D PERMA_2004 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D PERMA_2002 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D PERMA_1629 DegT/DnrJ/EryC1/StrS aminotransferase K13010 per; perosamine synthetase [EC:2.6.1.102]
D PERMA_0060 transcriptional regulator K13010 per; perosamine synthetase [EC:2.6.1.102]
D PERMA_1394 glmU; UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
C 00550 Peptidoglycan biosynthesis [PATH:pmx00550]
D PERMA_0090 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D PERMA_0621 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D PERMA_0941 murC; UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D PERMA_0624 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D PERMA_1882 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) (UDP-MurNAc-tripeptidesynt K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D PERMA_0620 D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D PERMA_1252 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D PERMA_0469 udp-murnac-pentapeptide sythetase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D PERMA_0376 uppS; di-trans, poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D PERMA_0381 uppP; undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D PERMA_1041 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D PERMA_0622 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D PERMA_0572 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D PERMA_0054 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D PERMA_0674 division specific D,D-transpeptidase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 00552 Teichoic acid biosynthesis [PATH:pmx00552]
D PERMA_0381 uppP; undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:pmx00730]
D PERMA_0795 thiC; thiamine biosynthesis protein ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D PERMA_1664 thiD; phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D PERMA_0218 cysteine desulfurase (Nitrogenase metalloclustersbiosynthesis protein NifS) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PERMA_1065 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PERMA_0964 thiO; glycine oxidase ThiO K03153 thiO; glycine oxidase [EC:1.4.3.19]
D PERMA_0368 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D PERMA_0581 thiG; thiazole biosynthesis protein ThiG K03149 thiG; thiazole synthase [EC:2.8.1.10]
D PERMA_1123 thiamine-phosphate pyrophosphorylase (TMPpyrophosphorylase) (TMP-PPase) (Thiamine-phosphate synthase) K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D PERMA_1410 thiE; thiamine-phosphate pyrophosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D PERMA_1080 thiL; thiamine-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D PERMA_0014 ATP binding protein K06928 NTPCR; nucleoside-triphosphatase [EC:3.6.1.15]
D PERMA_0939 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D PERMA_1217 adenylate kinase (ATP-AMP transphosphorylase) K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:pmx00740]
D PERMA_1569 riboflavin biosynthesis protein ribBA K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D PERMA_1907 ribD; riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D PERMA_0153 diaminohydroxyphosphoribosylaminopyrimidine reductase K14654 RIB7; 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase [EC:1.1.1.302]
D PERMA_0061 ribH; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D PERMA_1899 ribE; riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D PERMA_1970 ribF; riboflavin biosynthesis protein RibF K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D PERMA_0863 probable aromatic acid decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism [PATH:pmx00750]
D PERMA_0123 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
D PERMA_0448 pdxJ; pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2]
D PERMA_0223 thrC_1; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D PERMA_0257 thrC_2; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:pmx00760]
D PERMA_0497 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D PERMA_1761 nadA; quinolinate synthetase complex, A subunit K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D PERMA_0388 nadC; nicotinate-nucleotide diphosphorylase (carboxylating) K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D PERMA_0940 pncB; putative nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D PERMA_1380 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D PERMA_1464 nadD; nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D PERMA_1365 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D PERMA_0609 nadE; glutamine-dependent NAD+ synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D PERMA_0323 pyrazinamidase/nicotinamidase K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-]
D PERMA_1105 inorganic polyphosphate/ATP-NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
C 00770 Pantothenate and CoA biosynthesis [PATH:pmx00770]
D PERMA_0158 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PERMA_0157 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D PERMA_0155 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D PERMA_0558 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D PERMA_1684 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D PERMA_0258 panE; 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D PERMA_1115 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D PERMA_0451 type III pantothenate kinase (Pantothenic acid kinase)(PanK-III) K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D PERMA_1092 coaBC; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D PERMA_1365 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D PERMA_1757 coaD; pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D PERMA_1592 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D PERMA_1403 acpS; holo-[acyl-carrier-protein] synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D PERMA_1229 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D PERMA_1512 panD; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
C 00780 Biotin metabolism [PATH:pmx00780]
D PERMA_1857 methyltransferase, UbiE/COQ5 family K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197]
D PERMA_0509 fabF; beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D PERMA_0507 fabG; 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PERMA_1399 3-oxoacyl-[acyl-carrier-protein] reductase (3-ketoacyl-acyl carrier protein reductase) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PERMA_1468 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D PERMA_1874 enoyl-[acyl-carrier-protein] reductase [NADH] (nadh-dependent enoyl-acp reductase) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D PERMA_1856 putative carboxylesterase BioH (Biotin synthesis protein bioH) K02170 bioH; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85]
D PERMA_1854 bioW; 6-carboxyhexanoate--CoA ligase K01906 bioW; 6-carboxyhexanoate--CoA ligase [EC:6.2.1.14]
D PERMA_1230 8-amino-7-oxononanoate synthase (aons) (8-amino-7-ketopelargonate synthase) (7-keto-8-amino-pelargonic acid synthetase)(7-kap synthetase) (l-alanine--pimelyl-coa ligase) K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D PERMA_0901 bioA; adenosylmethionine-8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D PERMA_0649 bioD; dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D PERMA_1355 bioB; biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6]
D PERMA_1238 biotin-(acetyl-CoA-carboxylase) ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:pmx00785]
D PERMA_1020 lipB; lipoyl(octanoyl) transferase K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D PERMA_0907 lipA; lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D PERMA_0560 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PERMA_0108 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:pmx00790]
D PERMA_0904 folE; GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D PERMA_2015 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D PERMA_1675 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D PERMA_0632 folylpolyglutamate synthetase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D PERMA_1569 riboflavin biosynthesis protein ribBA K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D PERMA_1545 para-aminobenzoate synthase component 1 (Para-aminobenzoate synthase component I) (ADC synthase) K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85]
D PERMA_1633 aminodeoxychorismate lyase (4-amino-4-deoxychorismatelyase) (adc lyase) (adcl) K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D PERMA_0330 6-pyruvoyl tetrahydrobiopterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D PERMA_1385 putative 6-pyruvoyl tetrahydrobiopterin synthase (ptps)(ptp synthase) K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D PERMA_0966 oxidoreductase, short-chain dehydrogenase/reductase family K03793 PTR1; pteridine reductase [EC:1.5.1.33]
D PERMA_1320 radical SAM domain protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D PERMA_1976 ExsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D PERMA_0360 queF; 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D PERMA_0781 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D PERMA_1566 molybdenum cofactor biosynthesis bifunctional protein: molybdenum cofactor biosynthesis protein C/molybdenum cofactor biosynthesis protein B K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D PERMA_0161 moaE; molybdopterin converting factor, subunit 2 K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D PERMA_1120 molybdenum cofactor biosynthesis protein A K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D PERMA_1656 putative molybdopterin-guanine biosynthesis protein K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:pmx00670]
D PERMA_1712 bifunctional protein fold protein K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D PERMA_1104 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D PERMA_0010 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D PERMA_1500 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D PERMA_0584 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D PERMA_1670 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D PERMA_1648 thymidylate synthase ThyX (TS) (TSase) K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
D PERMA_0068 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D PERMA_0070 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:pmx00860]
D PERMA_1726 hemA; glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D PERMA_1058 hemL; glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D PERMA_0460 hemB; delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D PERMA_0444 hemC; porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D PERMA_1098 hemD; uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D PERMA_0946 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D PERMA_1329 hemN; oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D PERMA_0389 conserved hypothetical protein K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-]
D PERMA_1671 hemH; ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D PERMA_0310 cobA; uroporphyrinogen-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D PERMA_0893 siroheme synthase K24866 sirC; precorrin-2 dehydrogenase [EC:1.3.1.76]
D PERMA_0311 transcriptional regulator, AsnC/Lrp family K22225 ahbAB; siroheme decarboxylase [EC:4.1.1.111]
D PERMA_0307 cytochrome c, class I K24867 nirN; dihydro-heme d1 dehydrogenase
D PERMA_0861 Cob(I)yrinic acid a,c-diamide adenosyltransferase (Cob(I)alamin adenosyltransferase) (Corrinoid adenosyltransferase) K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D PERMA_0115 bacterioferritin (BFR) (Cytochrome B-557.5) K03594 bfr; bacterioferritin [EC:1.16.3.1]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:pmx00130]
D PERMA_1467 putative 4-hydroxybenzoate polyprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D PERMA_0005 menaquinone biosynthesis decarboxylase, family K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D PERMA_0863 probable aromatic acid decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D PERMA_1008 ubiquinone/menaquinone biosynthesis methyltransferase UbiE K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D PERMA_1475 methyltransferase, UbiE/COQ5 family K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D PERMA_1530 conserved hypothetical protein K11782 mqnA; chorismate dehydratase [EC:4.2.1.151]
D PERMA_0871 putative menaquinone biosynthesis protein, family K18285 mqnE; aminodeoxyfutalosine synthase [EC:2.5.1.120]
D PERMA_0377 menaquinone biosynthesis protein, family K11784 mqnC; cyclic dehypoxanthinyl futalosine synthase [EC:1.21.98.1]
D PERMA_0868 conserved hypothetical protein K11785 mqnD; 5,8-dihydroxy-2-naphthoate synthase [EC:4.1.99.29]
D PERMA_1087 flavodoxin K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:pmx00900]
D PERMA_0368 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D PERMA_0141 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D PERMA_1159 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D PERMA_1286 ispE; 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D PERMA_1106 ispF; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D PERMA_1514 ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D PERMA_0082 ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D PERMA_0863 probable aromatic acid decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D PERMA_0361 geranyltranstransferase (Farnesyl-diphosphate synthase) K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D PERMA_1511 octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D PERMA_0376 uppS; di-trans, poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D PERMA_1704 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis
D PERMA_1747 UDP-glucuronic acid decarboxylase 1 (UDP-glucuronatedecarboxylase 1) (UXS-1) K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
C 01055 Biosynthesis of vancomycin group antibiotics
D PERMA_1747 UDP-glucuronic acid decarboxylase 1 (UDP-glucuronatedecarboxylase 1) (UXS-1) K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis [PATH:pmx00332]
D PERMA_1075 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D PERMA_1682 proA; glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:pmx00261]
D PERMA_1983 sat; sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D PERMA_1634 asparate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4]
D PERMA_0373 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D PERMA_0058 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D PERMA_0454 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:pmx00521]
D PERMA_0334 Myo-inositol-1-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4]
D PERMA_1920 myo-inositol-1-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4]
D PERMA_0228 inositol-1-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D PERMA_1747 UDP-glucuronic acid decarboxylase 1 (UDP-glucuronatedecarboxylase 1) (UXS-1) K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
C 00525 Acarbose and validamycin biosynthesis
D PERMA_1747 UDP-glucuronic acid decarboxylase 1 (UDP-glucuronatedecarboxylase 1) (UXS-1) K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:pmx00401]
D PERMA_1281 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D PERMA_0163 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D PERMA_1926 hisC_2; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PERMA_1118 hisC_1; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D PERMA_0276 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D PERMA_1560 para-aminobenzoate synthase glutamine amidotransferase component II (ADC synthase) K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D PERMA_0648 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D PERMA_0507 fabG; 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PERMA_1399 3-oxoacyl-[acyl-carrier-protein] reductase (3-ketoacyl-acyl carrier protein reductase) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PERMA_1874 enoyl-[acyl-carrier-protein] reductase [NADH] (nadh-dependent enoyl-acp reductase) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D PERMA_0508 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:pmx00999]
D PERMA_0400 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D PERMA_0559 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D PERMA_1072 aroE; shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation
D PERMA_0336 conserved domain protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00627 Aminobenzoate degradation [PATH:pmx00627]
D PERMA_1850 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D PERMA_0863 probable aromatic acid decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation
D PERMA_0336 conserved domain protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00633 Nitrotoluene degradation [PATH:pmx00633]
D PERMA_0915 hybA; hydrogenase-2, small subunit K23548 hupU; uptake hydrogenase small subunit [EC:1.12.99.6]
D PERMA_0106 cooS; carbon-monoxide dehydrogenase, catalytic subunit K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D PERMA_0529 pyruvate synthase subunit PorA (Pyruvate oxidoreductasealpha chain) (POR) (Pyruvic-ferredoxin oxidoreductase subunit alpha) K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D PERMA_0528 pyruvate synthase subunit PorB (Pyruvate oxidoreductasebeta chain) (POR) (Pyruvic-ferredoxin oxidoreductase subunit beta) K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D PERMA_0531 pyruvate/ketoisovalerate oxidoreductases common subunit gamma K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D PERMA_0530 pyruvate synthase subunit PorD (Pyruvate oxidoreductasedelta chain) (POR) (Pyruvic-ferredoxin oxidoreductase subunit delta) K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation
C 00791 Atrazine degradation
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
D PERMA_0336 conserved domain protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00626 Naphthalene degradation
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:pmx03020]
D PERMA_1189 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D PERMA_1190 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D PERMA_1224 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D PERMA_1423 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:pmx03010]
D PERMA_0041 ribosomal protein S01 K02945 RP-S1; small subunit ribosomal protein S1
D PERMA_0231 rpsB; ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D PERMA_1202 rpsC; ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D PERMA_1223 rpsD; ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D PERMA_1213 rpsE; ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D PERMA_1291 rpsF; ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D PERMA_1192 rpsG; ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D PERMA_1210 rpsH; ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D PERMA_0430 rpsI; ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D PERMA_1195 rpsJ; ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D PERMA_1222 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D PERMA_1191 rpsL; ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D PERMA_1221 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D PERMA_1209 rpsN; ribosomal protein S14p/S29e K02954 RP-S14; small subunit ribosomal protein S14
D PERMA_0243 rpsO; ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D PERMA_1432 rpsP; ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D PERMA_1205 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D PERMA_1293 rpsR; ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D PERMA_1200 rpsS; ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D PERMA_0399 rpsT; ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D PERMA_0135 rpsU; ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D PERMA_1186 rplA; ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D PERMA_1199 rplB; ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D PERMA_1196 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D PERMA_1197 rplD; ribosomal protein, L4/L1 family K02926 RP-L4; large subunit ribosomal protein L4
D PERMA_1208 50S ribosomal protein L5 (BL6) K02931 RP-L5; large subunit ribosomal protein L5
D PERMA_1211 rplF; ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D PERMA_1188 rplL; ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D PERMA_1294 rplI; ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D PERMA_1187 rplJ; ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D PERMA_1185 rplK; ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D PERMA_0429 rplM; ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D PERMA_1206 rplN; ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D PERMA_1215 rplO; ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D PERMA_1203 rplP; ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D PERMA_1225 rplQ; ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D PERMA_1212 rplR; ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D PERMA_0364 rplS; ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D PERMA_0073 rplT; ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D PERMA_0051 rplU; ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D PERMA_1201 rplV; ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D PERMA_1198 rplW; ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D PERMA_1207 rplX; ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D PERMA_1289 ribosomal protein L25, Ctc-form K02897 RP-L25; large subunit ribosomal protein L25
D PERMA_0052 rpmA; ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D PERMA_0492 rpmB; ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D PERMA_1204 rpmC; ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D PERMA_1214 rpmD; ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D PERMA_0199 rpmE; ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D PERMA_0764 rpmF; ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D PERMA_1181 rpmG; ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D PERMA_0194 rpmH; ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D PERMA_0074 rpmI; ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D PERMA_1220 rpmJ; ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D PERMA_1941 Small subunit ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PERMA_1137 Small subunit ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PERMA_1143 rrf_1; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D PERMA_1935 rrf_2; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:pmx00970]
D PERMA_0206 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PERMA_1139 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PERMA_1939 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PERMA_1943 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PERMA_0201 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PERMA_1510 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PERMA_1946 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D PERMA_0278 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D PERMA_0672 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D PERMA_1287 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D PERMA_1170 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D PERMA_1178 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D PERMA_1604 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D PERMA_1303 tRNA-His K14226 tRNA-His; tRNA His
D PERMA_1138 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D PERMA_1940 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D PERMA_0955 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PERMA_1318 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PERMA_0253 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PERMA_1317 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PERMA_0512 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PERMA_1169 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D PERMA_0398 tRNA-Met K14230 tRNA-Met; tRNA Met
D PERMA_0765 tRNA-Met K14230 tRNA-Met; tRNA Met
D PERMA_1942 tRNA-Met K14230 tRNA-Met; tRNA Met
D PERMA_2016 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D PERMA_1944 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D PERMA_1381 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D PERMA_0383 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PERMA_1681 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PERMA_1828 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PERMA_1179 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D PERMA_1176 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D PERMA_1182 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D PERMA_1771 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D PERMA_1177 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D PERMA_0279 tRNA-Val K14237 tRNA-Val; tRNA Val
D PERMA_1171 tRNA-Val K14237 tRNA-Val; tRNA Val
D PERMA_1911 gltX; glutamyl-tRNA synthetase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D PERMA_1486 glutamyl-tRNA(Gln) amidotransferase subunit A (Glu-ADTsubunit A) K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D PERMA_0555 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (Asp/Glu-ADT subunit B) K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D PERMA_1974 gatC; glutamyl-tRNA(Gln) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D PERMA_0281 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PERMA_0091 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D PERMA_0570 glyQ; glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D PERMA_0569 glyS; glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D PERMA_1678 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D PERMA_1558 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D PERMA_1474 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D PERMA_0959 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D PERMA_0584 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D PERMA_1947 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D PERMA_0784 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D PERMA_0684 ileS; isoleucine#tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D PERMA_1426 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D PERMA_0595 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D PERMA_0207 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D PERMA_1877 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D PERMA_0072 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D PERMA_0071 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D PERMA_0176 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D PERMA_0473 trpS; tryptophan tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:pmx03060]
D PERMA_1216 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D PERMA_1183 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D PERMA_1045 preprotein translocase SecG subunit K03075 secG; preprotein translocase subunit SecG
D PERMA_1555 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D PERMA_1553 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D PERMA_0065 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D PERMA_0196 inner membrane protein OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase
D PERMA_1521 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D PERMA_1433 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D PERMA_0103 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D PERMA_1173 conserved domain protein K03116 tatA; sec-independent protein translocase protein TatA
D PERMA_1661 twin-arginine translocation system component TatB K03117 tatB; sec-independent protein translocase protein TatB
D PERMA_1660 tatC; twin arginine-targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
D PERMA_0639 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D PERMA_1522 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:pmx04122]
D PERMA_0218 cysteine desulfurase (Nitrogenase metalloclustersbiosynthesis protein NifS) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PERMA_1065 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PERMA_0653 rhodanese domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D PERMA_1069 protein C/C/C/C K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D PERMA_1503 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D PERMA_1068 thiamine biosynthesis protein K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D PERMA_0161 moaE; molybdopterin converting factor, subunit 2 K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D PERMA_0781 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D PERMA_0152 moaD; molybdopterin converting factor, subunit 1 K03636 moaD; sulfur-carrier protein
D PERMA_0222 MoaD family protein K03636 moaD; sulfur-carrier protein
D PERMA_0129 molybdenum cofactor synthesis protein 3 (Molybdopterinsynthase sulfurylase) (MPT synthase sulfurylase) K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D PERMA_1566 molybdenum cofactor biosynthesis bifunctional protein: molybdenum cofactor biosynthesis protein C/molybdenum cofactor biosynthesis protein B K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D PERMA_1875 thiS; thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein
D PERMA_1249 conserved domain protein K03154 thiS; sulfur carrier protein
C 03050 Proteasome
C 03018 RNA degradation [PATH:pmx03018]
D PERMA_1636 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D PERMA_0242 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D PERMA_0178 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D PERMA_0908 dead/deah box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D PERMA_0198 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D PERMA_0069 conserved hypothetical protein K18682 rny; ribonucrease Y [EC:3.1.-.-]
D PERMA_1298 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D PERMA_0751 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D PERMA_2026 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PERMA_1428 hfq_2; RNA chaperone Hfq K03666 hfq; host factor-I protein
D PERMA_0539 hfq_1; RNA chaperone Hfq K03666 hfq; host factor-I protein
D PERMA_1501 poly A polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:pmx03030]
D PERMA_0840 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PERMA_0590 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PERMA_0903 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D PERMA_0534 dnaX; DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D PERMA_0168 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D PERMA_1759 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D PERMA_1539 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D PERMA_1295 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D PERMA_1674 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D PERMA_1292 single-strand binding protein family protein K03111 ssb; single-strand DNA-binding protein
D PERMA_0423 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D PERMA_0363 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D PERMA_1840 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:pmx03410]
D PERMA_0457 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D PERMA_0607 probable endonuclease III (DNA-(apurinic orapyrimidinic site) lyase) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D PERMA_0250 T/G-specific DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D PERMA_0425 uracil-DNA glycosylase family 4 protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D PERMA_1509 probable endonuclease 4 (Endonuclease IV)(Endodeoxyribonuclease IV) K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D PERMA_0132 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D PERMA_1840 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:pmx03420]
D PERMA_1086 transcription-repair-coupling factor (trcf) (ATP-dependent helicase mfd) K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D PERMA_1332 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D PERMA_0777 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
D PERMA_0927 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D PERMA_0992 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D PERMA_1840 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:pmx03430]
D PERMA_0758 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D PERMA_1550 MutS2 protein K07456 mutS2; DNA mismatch repair protein MutS2
D PERMA_0003 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D PERMA_0992 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D PERMA_0132 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D PERMA_1292 single-strand binding protein family protein K03111 ssb; single-strand DNA-binding protein
D PERMA_0903 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D PERMA_1539 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D PERMA_0534 dnaX; DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D PERMA_1759 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D PERMA_0168 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D PERMA_0840 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PERMA_0590 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PERMA_1840 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:pmx03440]
D PERMA_0132 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D PERMA_1292 single-strand binding protein family protein K03111 ssb; single-strand DNA-binding protein
D PERMA_0327 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D PERMA_0532 recR; recombination protein RecR K06187 recR; recombination protein RecR
D PERMA_1973 recA; protein RecA K03553 recA; recombination protein RecA
D PERMA_1583 ruvA; holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D PERMA_1760 ruvB; holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D PERMA_0078 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D PERMA_1109 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D PERMA_0903 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D PERMA_1539 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D PERMA_0534 dnaX; DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D PERMA_1759 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D PERMA_0168 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D PERMA_0840 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PERMA_0590 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PERMA_1753 putative primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus and Lyssavirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:pmx02010]
D PERMA_1918 modA; molybdate ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D PERMA_1916 modB; molybdate ABC transporter, permease protein K02018 modB; molybdate transport system permease protein
D PERMA_1915 spermidine/putrescine import ATP-binding protein PotA K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D PERMA_1477 mce related protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D PERMA_1296 ABC-type transport system involved in resistance to organic solvents, permease component K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D PERMA_0256 ABC transporter K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D PERMA_1572 pstS; phosphate ABC transporter, phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D PERMA_1573 pstC; phosphate ABC transporter, permease protein PstC K02037 pstC; phosphate transport system permease protein
D PERMA_1574 pstA; phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein
D PERMA_1575 pstB; phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D PERMA_0938 periplasmic solute binding protein family K09815 znuA; zinc transport system substrate-binding protein
D PERMA_0462 ABC-3 protein K09816 znuB; zinc transport system permease protein
D PERMA_0463 manganese transport system ATP-binding protein MntA K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D PERMA_0830 CbiM K02007 cbiM; cobalt/nickel transport system permease protein
D PERMA_0828 ABC type permease K02008 cbiQ; cobalt/nickel transport system permease protein
D PERMA_0920 cobalt import ATP-binding protein CbiO 1 K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D PERMA_0833 conserved hypothetical protein K10094 cbiK; nickel transport protein
D PERMA_0832 conserved hypothetical protein K16915 cbiL; nickel transport protein
D PERMA_1737 lipoprotein releasing system, transmembrane protein, LolC/E family K09808 lolC_E; lipoprotein-releasing system permease protein
D PERMA_1738 lipoprotein-releasing system ATP-binding protein LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D PERMA_1721 putative permease, YjgP/YjgQ family K07091 lptF; lipopolysaccharide export system permease protein
D PERMA_0229 putative permease, YjgP/YjgQ family K11720 lptG; lipopolysaccharide export system permease protein
D PERMA_1853 ABC transporter K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D PERMA_1262 nitrous-oxide metabolic protein NosY K19341 nosY; Cu-processing system permease protein
D PERMA_1261 copper-transport ATP-binding protein NosF K19340 nosF; Cu-processing system ATP-binding protein
D PERMA_0446 ABC transporter K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
C 02060 Phosphotransferase system (PTS)
C 03070 Bacterial secretion system [PATH:pmx03070]
D PERMA_0682 outer membrane efflux protein K12340 tolC; outer membrane protein
D PERMA_0803 outer membrane efflux protein K12340 tolC; outer membrane protein
D PERMA_1544 outer membrane efflux protein K12340 tolC; outer membrane protein
D PERMA_0823 gspD; general secretion pathway protein D K02453 gspD; general secretion pathway protein D
D PERMA_0814 gspG; general secretion pathway protein G K02456 gspG; general secretion pathway protein G
D PERMA_0817 conserved hypothetical protein K02460 gspK; general secretion pathway protein K
D PERMA_0819 hypothetical protein K02462 gspM; general secretion pathway protein M
D PERMA_0824 general secretion pathway protein E (Type II traffic warden ATPase)(Cholera toxin secretion protein EpsE) K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D PERMA_1555 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D PERMA_1553 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D PERMA_1183 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D PERMA_1045 preprotein translocase SecG subunit K03075 secG; preprotein translocase subunit SecG
D PERMA_1216 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D PERMA_0065 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D PERMA_0196 inner membrane protein OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase
D PERMA_1521 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D PERMA_0103 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D PERMA_1433 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D PERMA_1173 conserved domain protein K03116 tatA; sec-independent protein translocase protein TatA
D PERMA_1661 twin-arginine translocation system component TatB K03117 tatB; sec-independent protein translocase protein TatB
D PERMA_1660 tatC; twin arginine-targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:pmx02020]
D PERMA_1577 phosphate regulon sensor protein PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D PERMA_1679 alkaline phosphatase synthesis transcriptional regulatory proteinphoP K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D PERMA_1572 pstS; phosphate ABC transporter, phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D PERMA_0172 protease do K04771 degP; serine protease Do [EC:3.4.21.107]
D PERMA_1465 protease do K04771 degP; serine protease Do [EC:3.4.21.107]
D PERMA_0853 chemiosmotic efflux system B protein B K07798 cusB; membrane fusion protein, copper/silver efflux system
D PERMA_0854 cation efflux system protein CusA K07787 cusA; copper/silver efflux system protein
D PERMA_1620 flagellar filament 34.5 kDa core protein (Class B) K02406 fliC; flagellin
D PERMA_1400 RNA polymerase sigma-D factor (Sigma-28) K02405 fliA; RNA polymerase sigma factor FliA
D PERMA_0723 RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA
D PERMA_0084 chemotaxis protein PomA K02556 motA; chemotaxis protein MotA
D PERMA_0909 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D PERMA_0441 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D PERMA_0440 hypothetical protein K07346 fimC; fimbrial chaperone protein
D PERMA_0438 putative P pilus assembly, fimbrial Usher protein K07347 fimD; outer membrane usher protein
D PERMA_0002 putative (Protein-PII) uridylyltransferase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D PERMA_1585 nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1
D PERMA_2025 nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1
D PERMA_0796 putative nitrogen regulation protein NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D PERMA_0797 nitrogen regulation protein K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D PERMA_1586 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PERMA_1042 putative nitrogen regulation protein NtrY K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D PERMA_0337 nitrogen assimilation regulatory protein NtrX K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX
D PERMA_1894 acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) K07714 atoC; two-component system, NtrC family, response regulator AtoC
D PERMA_1425 type 4 fimbriae expression regulatory protein PilR K02667 pilR; two-component system, NtrC family, response regulator PilR
D PERMA_0427 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D PERMA_1148 prokaryotic N-methylation motif domain protein K02650 pilA; type IV pilus assembly protein PilA
D PERMA_1149 fimbrillin K02650 pilA; type IV pilus assembly protein PilA
D PERMA_0915 hybA; hydrogenase-2, small subunit K23548 hupU; uptake hydrogenase small subunit [EC:1.12.99.6]
D PERMA_0697 Ni-Fe hydrogenase, cytochrome B subunit K03620 hyaC; Ni/Fe-hydrogenase 1 B-type cytochrome subunit
D PERMA_0745 cheR; CheR methyltransferase, SAM binding domain protein K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D PERMA_0900 chemotaxis protein methyltransferase 2 K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D PERMA_1487 Methyl-accepting chemotaxis protein signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein
D PERMA_0401 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D PERMA_0737 putative methyl-accepting chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein
D PERMA_0738 Methyl-accepting chemotaxis protein signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein
D PERMA_0741 purine-binding chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D PERMA_0742 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D PERMA_0739 chemotactic response regulator CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D PERMA_0744 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D PERMA_0740 chemotactic response regulator CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D PERMA_1497 cell division response regulator DivK K11443 divK; two-component system, cell cycle response regulator DivK
D PERMA_1683 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D PERMA_0586 petA; ubiquinol-Cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D PERMA_0587 cytochrome B K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D PERMA_0588 ubiquinol Cytochrome c oxidoreductase, cytochrome c1 subunit K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D PERMA_0947 cytochrome c552 K08738 CYC; cytochrome c
D PERMA_0949 cytoChrome c-551 (Cytochrome c551) (Cytochrome C8) K08738 CYC; cytochrome c
D PERMA_1254 cytoChrome c-552 (Cytochrome c552) K08738 CYC; cytochrome c
D PERMA_1256 cytoChrome c-552 (Cytochrome c552) K08738 CYC; cytochrome c
D PERMA_1263 cytochrome c family protein K08738 CYC; cytochrome c
D PERMA_1541 cytochrome c K08738 CYC; cytochrome c
D PERMA_1446 cytochrome c552 K08738 CYC; cytochrome c
D PERMA_0411 putative cytochrome c oxidase, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D PERMA_0412 cytochrome c oxidase, Cbb3-type, subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D PERMA_0682 outer membrane efflux protein K12340 tolC; outer membrane protein
D PERMA_0803 outer membrane efflux protein K12340 tolC; outer membrane protein
D PERMA_1544 outer membrane efflux protein K12340 tolC; outer membrane protein
D PERMA_0217 anti sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
D PERMA_0586 petA; ubiquinol-Cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:pmx02024]
D PERMA_1428 hfq_2; RNA chaperone Hfq K03666 hfq; host factor-I protein
D PERMA_0539 hfq_1; RNA chaperone Hfq K03666 hfq; host factor-I protein
D PERMA_0276 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D PERMA_1560 para-aminobenzoate synthase glutamine amidotransferase component II (ADC synthase) K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D PERMA_1167 long-chain-fatty-acid CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PERMA_1924 2-succinylbenzoate--CoA ligase (OSB-CoA synthetase) (o-succinylbenzoyl-CoA synthetase) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PERMA_1683 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D PERMA_1907 ribD; riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D PERMA_1125 transporter K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D PERMA_1039 oligopeptide transport system permease protein AppB K02033 ABC.PE.P; peptide/nickel transport system permease protein
D PERMA_1038 oligopeptide transport system permease protein AppC K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D PERMA_1100 glutathione import ATP-binding protein GsiA K02031 ddpD; peptide/nickel transport system ATP-binding protein
D PERMA_1602 oligopeptide transport ATP-binding protein AppF K02032 ddpF; peptide/nickel transport system ATP-binding protein
D PERMA_0196 inner membrane protein OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase
D PERMA_1183 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D PERMA_1045 preprotein translocase SecG subunit K03075 secG; preprotein translocase subunit SecG
D PERMA_1216 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D PERMA_0065 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D PERMA_1521 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D PERMA_0103 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D PERMA_1433 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:pmx02030]
D PERMA_1487 Methyl-accepting chemotaxis protein signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein
D PERMA_0401 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D PERMA_0737 putative methyl-accepting chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein
D PERMA_0738 Methyl-accepting chemotaxis protein signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein
D PERMA_0742 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D PERMA_0741 purine-binding chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D PERMA_0739 chemotactic response regulator CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D PERMA_0744 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D PERMA_0740 chemotactic response regulator CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D PERMA_0745 cheR; CheR methyltransferase, SAM binding domain protein K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D PERMA_0900 chemotaxis protein methyltransferase 2 K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D PERMA_0735 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D PERMA_0734 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D PERMA_0733 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D PERMA_0711 flagellar motor switch phosphatase FliY K02417 fliN; flagellar motor switch protein FliN
D PERMA_1547 hypothetical protein K02417 fliN; flagellar motor switch protein FliN
D PERMA_0084 chemotaxis protein PomA K02556 motA; chemotaxis protein MotA
D PERMA_0085 flagellar motor protein MotB K02557 motB; chemotaxis protein MotB
D PERMA_0086 OmpA family protein K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:pmx02040]
D PERMA_0718 fliE; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D PERMA_0717 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D PERMA_0735 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D PERMA_0716 hypothetical protein K02411 fliH; flagellar assembly protein FliH
D PERMA_0715 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D PERMA_0712 fliL; flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL
D PERMA_0734 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D PERMA_0733 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D PERMA_0711 flagellar motor switch phosphatase FliY K02417 fliN; flagellar motor switch protein FliN
D PERMA_1547 hypothetical protein K02417 fliN; flagellar motor switch protein FliN
D PERMA_0709 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D PERMA_0708 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D PERMA_0707 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D PERMA_0726 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D PERMA_0706 flhB; flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D PERMA_0730 putative flagellar protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D PERMA_0720 flgB; flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D PERMA_0719 flgC; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D PERMA_0714 flagellar hook capping protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD
D PERMA_0713 flagellar basal body and hook protein FlgE K02390 flgE; flagellar hook protein FlgE
D PERMA_0732 flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D PERMA_0731 flgG; flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D PERMA_0729 flgH; flagellar L-ring protein FlgH K02393 flgH; flagellar L-ring protein FlgH
D PERMA_0728 flgI; flagellar P-ring protein FlgI K02394 flgI; flagellar P-ring protein FlgI
D PERMA_0727 conserved hypothetical protein K02395 flgJ; peptidoglycan hydrolase FlgJ
D PERMA_1614 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D PERMA_1615 flgL; flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D PERMA_1620 flagellar filament 34.5 kDa core protein (Class B) K02406 fliC; flagellin
D PERMA_1618 putative flagellar hook-associated protein 2 FliD K02407 fliD; flagellar hook-associated protein 2
D PERMA_1617 fliS; flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D PERMA_0084 chemotaxis protein PomA K02556 motA; chemotaxis protein MotA
D PERMA_0085 flagellar motor protein MotB K02557 motB; chemotaxis protein MotB
D PERMA_0086 OmpA family protein K02557 motB; chemotaxis protein MotB
D PERMA_0217 anti sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D PERMA_1673 RNA polymerase sigma factor RpoD (Sigma-70) K03086 rpoD; RNA polymerase primary sigma factor
D PERMA_0089 rpoD; RNA polymerase sigma-70 factor K03086 rpoD; RNA polymerase primary sigma factor
D PERMA_0173 RNA polymerase sigma factor RpoD (Sigma-A) (Sigma-43) K03086 rpoD; RNA polymerase primary sigma factor
D PERMA_0427 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D PERMA_1400 RNA polymerase sigma-D factor (Sigma-28) K02405 fliA; RNA polymerase sigma factor FliA
D PERMA_0723 RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D PERMA_1636 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
D PERMA_1670 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:pmx01501]
D PERMA_1480 acriflavin resistance protein AcrE K03585 acrA; membrane fusion protein, multidrug efflux system
D PERMA_0682 outer membrane efflux protein K12340 tolC; outer membrane protein
D PERMA_0803 outer membrane efflux protein K12340 tolC; outer membrane protein
D PERMA_1544 outer membrane efflux protein K12340 tolC; outer membrane protein
D PERMA_0572 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D PERMA_0054 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D PERMA_0674 division specific D,D-transpeptidase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:pmx01502]
D PERMA_0620 D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D PERMA_1252 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D PERMA_0469 udp-murnac-pentapeptide sythetase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D PERMA_1041 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D PERMA_0622 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:pmx01503]
D PERMA_0450 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D PERMA_0172 protease do K04771 degP; serine protease Do [EC:3.4.21.107]
D PERMA_1465 protease do K04771 degP; serine protease Do [EC:3.4.21.107]
D PERMA_1480 acriflavin resistance protein AcrE K03585 acrA; membrane fusion protein, multidrug efflux system
D PERMA_0682 outer membrane efflux protein K12340 tolC; outer membrane protein
D PERMA_0803 outer membrane efflux protein K12340 tolC; outer membrane protein
D PERMA_1544 outer membrane efflux protein K12340 tolC; outer membrane protein
D PERMA_0355 lpxA; acyl-(acyl-carrier-protein)-UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:pmx01000]
C 01001 Protein kinases [BR:pmx01001]
D PERMA_1577 phosphate regulon sensor protein PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D PERMA_0951 periplasmic sensor signal transduction histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D PERMA_0796 putative nitrogen regulation protein NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D PERMA_1042 putative nitrogen regulation protein NtrY K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D PERMA_1548 sensor histidine kinase/response regulator K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D PERMA_0742 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:pmx01009]
D PERMA_0556 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D PERMA_1298 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D PERMA_1232 conserved hypothetical protein K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
C 01002 Peptidases and inhibitors [BR:pmx01002]
D PERMA_1522 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D PERMA_1933 leader peptidase PppA K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D PERMA_1017 Ni/Fe hydrogenase, expression/formation protein K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-]
D PERMA_0029 guaA; GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D PERMA_1001 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D PERMA_0642 glutamate synthase [NADPH] large chain (nadph-gogat) K00284 GLU; glutamate synthase (ferredoxin) [EC:1.4.7.1]
D PERMA_1982 glmS; glutamine-fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D PERMA_1551 intracellular protease 1 (Intracellular protease I) K05520 yhbO; deglycase [EC:3.5.1.124]
D PERMA_2017 ErfK/YbiS/YcfS/YnhG family protein K16291 erfK; L,D-transpeptidase ErfK/SrfK
D PERMA_0789 caax amino protease family protein K07052 K07052; CAAX protease family protein
D PERMA_0406 oligopeptidase A K01414 prlC; oligopeptidase A [EC:3.4.24.70]
D PERMA_1652 processing protease K07263 pqqL; zinc protease [EC:3.4.24.-]
D PERMA_1904 cytosol aminopeptidase (Leucine aminopeptidase) (LAP)(Leucyl aminopeptidase) K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D PERMA_0275 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D PERMA_1218 map; methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D PERMA_1003 Xaa-Pro dipeptidase (X-Pro dipeptidase) (Prolinedipeptidase) (Prolidase) (Imidodipeptidase) K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D PERMA_0396 cell division protease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D PERMA_0749 putative protease HtpX homolog K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D PERMA_0140 rseP; RIP metalloprotease RseP K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D PERMA_0172 protease do K04771 degP; serine protease Do [EC:3.4.21.107]
D PERMA_1465 protease do K04771 degP; serine protease Do [EC:3.4.21.107]
D PERMA_1324 clpP; ATP-dependent Clp protease, proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D PERMA_1161 lon; ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D PERMA_1538 lexA; repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D PERMA_0639 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D PERMA_0187 ctpA; carboxy-peptidase K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D PERMA_0392 sppA; signal peptide peptidase SppA, 36K type K04773 sppA; protease IV [EC:3.4.21.-]
D PERMA_0416 rhomboid family protein K07059 K07059; rhomboid family protein
D PERMA_1754 hslV; ATP-dependent protease HslVU, peptidase subunit K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D PERMA_0102 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D PERMA_1251 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D PERMA_0934 prtC; collagenase K08303 prtC; U32 family peptidase [EC:3.4.-.-]
C 01003 Glycosyltransferases [BR:pmx01003]
D PERMA_0572 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D PERMA_1360 glycosyl transferase, group 1 K21011 pelF; polysaccharide biosynthesis protein PelF
D PERMA_0017 alpha,alpha-trehalose-phosphate synthase [UDP-forming] (Trehalose-6-phosphate synthase) (UDP-glucose-glucosephosphateglucosyltransferase) K16055 TPS; trehalose 6-phosphate synthase/phosphatase [EC:2.4.1.15 3.1.3.12]
D PERMA_1582 glucosyl-3-phosphoglycerate synthase K13693 gpgS; glucosyl-3-phosphoglycerate synthase [EC:2.4.1.266]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:pmx01005]
D PERMA_0355 lpxA; acyl-(acyl-carrier-protein)-UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D PERMA_1354 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D PERMA_1097 lpxC; UDP-3-O-(3-hydroxymyristoyl) N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D PERMA_1743 lpxD; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D PERMA_0354 conserved hypothetical protein K09949 lpxI; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D PERMA_1268 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D PERMA_1057 putative lipid A biosynthesis acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D PERMA_1352 putative bifunctional glycosyltransferase/methyltransferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D PERMA_0417 kdsA; 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D PERMA_0579 kdsB; 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D PERMA_2019 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D PERMA_0165 arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D PERMA_0432 rfaE_1; bifunctional protein RfaE, domain I K21344 rfaE1; D-glycero-beta-D-manno-heptose-7-phosphate kinase [EC:2.7.1.167]
D PERMA_1930 rfaE_2; bifunctional protein RfaE, domain II K21345 rfaE2; D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase [EC:2.7.7.70]
D PERMA_0045 ADP-heptose:LPS heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D PERMA_1830 gmhA; phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D PERMA_0686 D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D PERMA_1084 rfaD; ADP-glyceromanno-heptose 6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D PERMA_1998 O antigen biosynthesis abequosyltransferase RfbV K13005 rfbV; O-antigen biosynthesis alpha-1,3-abequosyltransferase [EC:2.4.1.60]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:pmx01011]
D PERMA_0090 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D PERMA_0621 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D PERMA_0941 murC; UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D PERMA_0624 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D PERMA_1882 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) (UDP-MurNAc-tripeptidesynt K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D PERMA_0620 D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D PERMA_1252 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D PERMA_0995 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D PERMA_1041 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D PERMA_0622 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D PERMA_0381 uppP; undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D PERMA_0021 mviN; integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase
D PERMA_0572 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D PERMA_0054 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D PERMA_0674 division specific D,D-transpeptidase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D PERMA_2017 ErfK/YbiS/YcfS/YnhG family protein K16291 erfK; L,D-transpeptidase ErfK/SrfK
D PERMA_1898 transglycosylase SLT domain protein K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D PERMA_1958 membrane-bound lytic murein transglycosylase C K08306 mltC; peptidoglycan lytic transglycosylase C [EC:4.2.2.29]
D PERMA_1089 mltD; membrane-bound lytic murein transglycosylase D K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D PERMA_1513 glycoside hydrolase family 23 K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D PERMA_1720 aminodeoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D PERMA_0450 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:pmx01004]
D PERMA_0648 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D PERMA_0761 3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 1 (3-oxoacyl-[acyl-carrier-protein] synthase III protein 1) (Beta-ketoacyl-ACP synthase III 1) (KAS III 1) (bFabH1) K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D PERMA_0509 fabF; beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D PERMA_0507 fabG; 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PERMA_1399 3-oxoacyl-[acyl-carrier-protein] reductase (3-ketoacyl-acyl carrier protein reductase) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PERMA_1468 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D PERMA_1874 enoyl-[acyl-carrier-protein] reductase [NADH] (nadh-dependent enoyl-acp reductase) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D PERMA_0836 acsA_2; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PERMA_0597 acsA_1; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PERMA_1167 long-chain-fatty-acid CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PERMA_1924 2-succinylbenzoate--CoA ligase (OSB-CoA synthetase) (o-succinylbenzoyl-CoA synthetase) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PERMA_0763 plsX; fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D PERMA_0615 plsY; acyl-phosphate glycerol 3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D PERMA_0081 2-acylglycerophosphoethanolamine acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins
C 01006 Prenyltransferases [BR:pmx01006]
D PERMA_0361 geranyltranstransferase (Farnesyl-diphosphate synthase) K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D PERMA_1511 octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D PERMA_0376 uppS; di-trans, poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D PERMA_0538 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D PERMA_1467 putative 4-hydroxybenzoate polyprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
C 01007 Amino acid related enzymes [BR:pmx01007]
D PERMA_1911 gltX; glutamyl-tRNA synthetase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D PERMA_0176 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D PERMA_0473 trpS; tryptophan tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D PERMA_1474 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D PERMA_0595 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D PERMA_0959 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D PERMA_0684 ileS; isoleucine#tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D PERMA_1947 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D PERMA_0784 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D PERMA_1426 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D PERMA_0091 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D PERMA_1877 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D PERMA_0570 glyQ; glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D PERMA_0569 glyS; glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D PERMA_1558 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D PERMA_0207 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D PERMA_1678 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D PERMA_0281 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PERMA_0072 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D PERMA_0071 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D PERMA_0163 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D PERMA_1852 aminotransferase, class I/II K14261 alaC; alanine-synthesizing transaminase [EC:2.6.1.-]
D PERMA_0766 dapC; succinyldiaminopimelate transaminase K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83]
D PERMA_1926 hisC_2; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PERMA_1118 hisC_1; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PERMA_1230 8-amino-7-oxononanoate synthase (aons) (8-amino-7-ketopelargonate synthase) (7-keto-8-amino-pelargonic acid synthetase)(7-kap synthetase) (l-alanine--pimelyl-coa ligase) K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D PERMA_0177 acetylornithine aminotransferase (acoat) K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D PERMA_0901 bioA; adenosylmethionine-8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D PERMA_1058 hemL; glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D PERMA_1229 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D PERMA_1629 DegT/DnrJ/EryC1/StrS aminotransferase K13010 per; perosamine synthetase [EC:2.6.1.102]
D PERMA_0060 transcriptional regulator K13010 per; perosamine synthetase [EC:2.6.1.102]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:pmx00194]
D PERMA_1695 atpC_2; ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D PERMA_1050 atpC_1; ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D PERMA_0184 atpD_1; ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D PERMA_1696 atpD_2; ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D PERMA_0183 atpG_1; ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D PERMA_1697 atpG_2; ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D PERMA_0182 atpA_1; ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D PERMA_1698 atpA_2; ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D PERMA_0181 atpH; ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D PERMA_1699 ATP synthase B/B' CF(0) family K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D PERMA_0179 putative ATP synthase F0 subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D PERMA_0180 putative ATP synthase F0 subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D PERMA_1700 ATP synthase C chain, sodium ion specific (Lipid-bindingprotein) K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D PERMA_0193 ATP synthase C chain (Lipid-binding protein) K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D PERMA_1701 atpB_2; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D PERMA_0191 atpB_1; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D PERMA_1694 putative ATP synthase K02116 atpI; ATP synthase protein I
D PERMA_0456 ATP synthase protein I K02116 atpI; ATP synthase protein I
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:pmx03000]
D PERMA_0251 putative modification methylase FnuDI K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D PERMA_0166 transcriptional regulator, LysR family K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
D PERMA_0543 YcnK K21601 ycnK; DeoR family transcriptional regulator, copper-sensing transcriptional repressor
D PERMA_0860 putative YsiA K13770 ysiA; TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein
D PERMA_0916 transcriptional regulator, TetR family K22106 fatR; TetR/AcrR family transcriptional regulator, repressor of fatR-cypB operon
D PERMA_1844 transcriptional regulator K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
D PERMA_1658 transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D PERMA_0024 ferric uptake regulator, Fur family K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
D PERMA_0277 transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D PERMA_0536 transcriptional regulator, IclR family K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D PERMA_1683 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D PERMA_0318 Rrf2 family protein K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D PERMA_1238 biotin-(acetyl-CoA-carboxylase) ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D PERMA_1932 molybdenum-pterin-binding protein K02019 modE; molybdate transport system regulatory protein
D PERMA_1919 molybdenum-pterin-binding protein K02019 modE; molybdate transport system regulatory protein
D PERMA_0919 repressor K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
D PERMA_0813 putative ParB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D PERMA_0109 glycine cleavage system regulatory protein K03567 gcvR; glycine cleavage system transcriptional repressor
D PERMA_0322 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D PERMA_1523 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D PERMA_1060 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
C 03021 Transcription machinery [BR:pmx03021]
D PERMA_1224 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D PERMA_1189 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D PERMA_1190 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D PERMA_1423 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D PERMA_1673 RNA polymerase sigma factor RpoD (Sigma-70) K03086 rpoD; RNA polymerase primary sigma factor
D PERMA_0089 rpoD; RNA polymerase sigma-70 factor K03086 rpoD; RNA polymerase primary sigma factor
D PERMA_0173 RNA polymerase sigma factor RpoD (Sigma-A) (Sigma-43) K03086 rpoD; RNA polymerase primary sigma factor
D PERMA_0427 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D PERMA_1400 RNA polymerase sigma-D factor (Sigma-28) K02405 fliA; RNA polymerase sigma factor FliA
D PERMA_0723 RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA
D PERMA_0236 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D PERMA_0062 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D PERMA_1184 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG
D PERMA_0322 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D PERMA_1523 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D PERMA_0198 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:pmx03019]
D PERMA_0998 ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D PERMA_0511 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D PERMA_0069 conserved hypothetical protein K18682 rny; ribonucrease Y [EC:3.1.-.-]
D PERMA_0178 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D PERMA_0908 dead/deah box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D PERMA_1636 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D PERMA_0242 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D PERMA_0198 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D PERMA_1298 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D PERMA_0751 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D PERMA_2026 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PERMA_1428 hfq_2; RNA chaperone Hfq K03666 hfq; host factor-I protein
D PERMA_0539 hfq_1; RNA chaperone Hfq K03666 hfq; host factor-I protein
D PERMA_1501 poly A polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
C 03041 Spliceosome
C 03011 Ribosome [BR:pmx03011]
D PERMA_0041 ribosomal protein S01 K02945 RP-S1; small subunit ribosomal protein S1
D PERMA_0231 rpsB; ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D PERMA_1202 rpsC; ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D PERMA_1223 rpsD; ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D PERMA_1213 rpsE; ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D PERMA_1291 rpsF; ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D PERMA_1192 rpsG; ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D PERMA_1210 rpsH; ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D PERMA_0430 rpsI; ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D PERMA_1195 rpsJ; ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D PERMA_1222 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D PERMA_1191 rpsL; ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D PERMA_1221 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D PERMA_1209 rpsN; ribosomal protein S14p/S29e K02954 RP-S14; small subunit ribosomal protein S14
D PERMA_0243 rpsO; ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D PERMA_1432 rpsP; ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D PERMA_1205 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D PERMA_1293 rpsR; ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D PERMA_1200 rpsS; ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D PERMA_0399 rpsT; ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D PERMA_0135 rpsU; ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D PERMA_1186 rplA; ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D PERMA_1199 rplB; ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D PERMA_1196 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D PERMA_1197 rplD; ribosomal protein, L4/L1 family K02926 RP-L4; large subunit ribosomal protein L4
D PERMA_1208 50S ribosomal protein L5 (BL6) K02931 RP-L5; large subunit ribosomal protein L5
D PERMA_1211 rplF; ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D PERMA_1294 rplI; ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D PERMA_1187 rplJ; ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D PERMA_1185 rplK; ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D PERMA_1188 rplL; ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D PERMA_0429 rplM; ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D PERMA_1206 rplN; ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D PERMA_1215 rplO; ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D PERMA_1203 rplP; ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D PERMA_1225 rplQ; ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D PERMA_1212 rplR; ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D PERMA_0364 rplS; ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D PERMA_0073 rplT; ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D PERMA_0051 rplU; ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D PERMA_1201 rplV; ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D PERMA_1198 rplW; ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D PERMA_1207 rplX; ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D PERMA_0052 rpmA; ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D PERMA_0492 rpmB; ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D PERMA_1204 rpmC; ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D PERMA_1214 rpmD; ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D PERMA_0199 rpmE; ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D PERMA_0764 rpmF; ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D PERMA_1181 rpmG; ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D PERMA_0194 rpmH; ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D PERMA_0074 rpmI; ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D PERMA_1220 rpmJ; ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D PERMA_1289 ribosomal protein L25, Ctc-form K02897 RP-L25; large subunit ribosomal protein L25
D PERMA_1143 rrf_1; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D PERMA_1935 rrf_2; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D PERMA_1941 Small subunit ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PERMA_1137 Small subunit ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
C 03009 Ribosome biogenesis [BR:pmx03009]
D PERMA_0511 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D PERMA_0644 era; GTP-binding protein Era K03595 era; GTPase
D PERMA_0490 cgtA; Obg family GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-]
D PERMA_0322 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D PERMA_1523 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D PERMA_0236 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D PERMA_0062 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D PERMA_1184 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG
D PERMA_1596 RNA pseudouridine synthase family protein K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D PERMA_0520 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D PERMA_1756 conserved hypothetical protein K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D PERMA_0461 ribosomal RNA small subunit methyltransferase E (16S rRNAm3U1498 methyltransferase) K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D PERMA_1607 gidB; 16S rRNA methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D PERMA_0676 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D PERMA_0782 conserved hypothetical protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D PERMA_0164 hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D PERMA_0585 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D PERMA_0087 methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D PERMA_0280 radical SAM enzyme, Cfr family K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D PERMA_0574 radical SAM enzyme, Cfr family K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D PERMA_1601 rumA; 23S rRNA (uracil-5-)-methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D PERMA_1025 rluB; ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D PERMA_0869 RNA pseudouridine synthase family protein K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D PERMA_0875 ribosomal large subunit pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D PERMA_1568 rimI; ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D PERMA_1966 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
D PERMA_0494 conserved hypothetical protein K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D PERMA_1842 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D PERMA_0998 ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D PERMA_1719 conserved hypothetical protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D PERMA_0908 dead/deah box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D PERMA_0939 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D PERMA_0019 engA; ribosome-associated GTPase EngA K03977 engA; GTPase
D PERMA_0540 hflX; GTP-binding protein HflX K03665 hflX; GTPase
D PERMA_1686 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D PERMA_0614 GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D PERMA_0393 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D PERMA_0235 conserved hypothetical protein K09748 rimP; ribosome maturation factor RimP
D PERMA_0996 development gene iojAP superfamily protein K09710 ybeB; ribosome-associated protein
D PERMA_1963 conserved hypothetical protein K07042 ybeY; probable rRNA maturation factor
D PERMA_0428 sigma 54 modulation protein K05808 hpf; ribosome hibernation promoting factor
D PERMA_0212 ychF; GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase
D PERMA_1642 conserved hypothetical protein K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:pmx03016]
D PERMA_1764 ribonuclease Z (RNase Z) (tRNase Z) (tRNA 3endonuclease) K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D PERMA_0954 poly A polymerase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D PERMA_0847 gp160 K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
D PERMA_0207 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D PERMA_0684 ileS; isoleucine#tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D PERMA_0784 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D PERMA_0959 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D PERMA_0595 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D PERMA_1426 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D PERMA_0091 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D PERMA_0281 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PERMA_1678 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D PERMA_1558 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D PERMA_1474 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D PERMA_1947 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D PERMA_1877 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D PERMA_0072 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D PERMA_0071 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D PERMA_0176 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D PERMA_0473 trpS; tryptophan tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D PERMA_0018 dtd; D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D PERMA_0541 histidine triad nucleotide-binding protein 2 K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D PERMA_1076 tRNA methyltransferase complex GCD14 subunit K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220]
D PERMA_0643 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D PERMA_0631 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D PERMA_0571 truD_1; tRNA pseudouridine synthase D K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D PERMA_1706 truD_2; tRNA pseudouridine synthase D K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D PERMA_0218 cysteine desulfurase (Nitrogenase metalloclustersbiosynthesis protein NifS) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PERMA_1065 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PERMA_1686 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D PERMA_0538 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D PERMA_0197 trmE; tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D PERMA_0790 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D PERMA_1987 cysQ; 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D PERMA_0259 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D PERMA_0794 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D PERMA_0570 glyQ; glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D PERMA_0569 glyS; glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D PERMA_1911 gltX; glutamyl-tRNA synthetase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D PERMA_0149 tRNA-specific adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D PERMA_0760 miaB; tRNA-I(6)A37 thiotransferase enzyme MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D PERMA_1953 conserved hypothetical protein K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5]
D PERMA_0159 trmFO; tRNA:M(5)U-54 methyltransferase K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74]
D PERMA_1163 trmD; tRNA (guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D PERMA_1049 methyltransferase small K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223]
D PERMA_1503 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D PERMA_1068 thiamine biosynthesis protein K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D PERMA_1248 PP-loop domain protein K21947 ttuA; tRNA-5-methyluridine54 2-sulfurtransferase [EC:2.8.1.15]
D PERMA_1069 protein C/C/C/C K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D PERMA_1408 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D PERMA_1976 ExsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D PERMA_0330 6-pyruvoyl tetrahydrobiopterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D PERMA_1385 putative 6-pyruvoyl tetrahydrobiopterin synthase (ptps)(ptp synthase) K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D PERMA_1320 radical SAM domain protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D PERMA_0360 queF; 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D PERMA_1610 conserved hypothetical protein K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6]
D PERMA_1878 tgt; queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D PERMA_0397 tRNA(Ile)-lysidine synthase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D PERMA_0220 putative peptidase M22 glycoprotease K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D PERMA_0185 probable O-sialoglycoprotein endopeptidase (Glycoprotease) K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D PERMA_1430 conserved hypothetical protein K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D PERMA_0178 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D PERMA_0242 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D PERMA_1869 PilT protein domain protein K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
C 03012 Translation factors [BR:pmx03012]
D PERMA_0238 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D PERMA_0498 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D PERMA_0232 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts
D PERMA_1180 tuf_1; translation elongation factor Tu K02358 tuf; elongation factor Tu
D PERMA_1194 tuf_2; translation elongation factor Tu K02358 tuf; elongation factor Tu
D PERMA_1193 fusA; translation elongation factor G K02355 fusA; elongation factor G
D PERMA_0200 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D PERMA_0234 frr; ribosome recycling factor K02838 frr; ribosome recycling factor
D PERMA_0088 prmC; protein-(glutamine-N5) methyltransferase, release factor-specific K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D PERMA_1290 pth; peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D PERMA_1219 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D PERMA_1082 efp; translation elongation factor P K02356 efp; elongation factor P
D PERMA_1095 lysine--tRNA ligase K04568 epmA; elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-]
D PERMA_1978 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
C 03110 Chaperones and folding catalysts [BR:pmx03110]
D PERMA_0757 ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D PERMA_1739 negative regulator of genetic competence ClpC/mecB K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC
D PERMA_1325 clpX; ATP-dependent Clp protease, ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D PERMA_0598 hslU; ATP-dependent protease HslVU, ATPase subunit K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D PERMA_0751 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D PERMA_2026 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PERMA_1845 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D PERMA_0979 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D PERMA_0981 grpE; co-chaperone GrpE K03687 GRPE; molecular chaperone GrpE
D PERMA_0273 small heat shock protein K13993 HSP20; HSP20 family protein
D PERMA_1162 heat shock protein Hsp20 K13993 HSP20; HSP20 family protein
D PERMA_0001 groS_1; chaperonin GroS K04078 groES; chaperonin GroES
D PERMA_2027 groS_2; chaperonin GroS K04078 groES; chaperonin GroES
D PERMA_0172 protease do K04771 degP; serine protease Do [EC:3.4.21.107]
D PERMA_1465 protease do K04771 degP; serine protease Do [EC:3.4.21.107]
D PERMA_0396 cell division protease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D PERMA_1701 atpB_2; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D PERMA_0191 atpB_1; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D PERMA_0440 hypothetical protein K07346 fimC; fimbrial chaperone protein
D PERMA_1264 periplasmiC protein conserved in bacteria with histidine K09796 pccA; periplasmic copper chaperone A
D PERMA_0350 hypA; hydrogenase nickel insertion protein HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF
D PERMA_0918 hypB; hydrogenase accessory protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB
D PERMA_1471 peptidyl-prolyl cis-trans isomerase B K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D PERMA_0679 hypothetical protein K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D PERMA_0345 peptidyl-prolyl cis-trans isomerase, fkbp-type K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D PERMA_1395 SurA N-domain family K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D PERMA_0356 trxA; thioredoxin K03671 TXN; thioredoxin
D PERMA_1247 thioredoxin domain protein K05838 ybbN; putative thioredoxin
D PERMA_A0039 thiol:disulfide interchange protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D PERMA_1102 protein disulfide isomerase K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
C 04131 Membrane trafficking [BR:pmx04131]
D PERMA_1729 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D PERMA_0470 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D PERMA_1047 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (phosphoglyceromutase) (pgam) (bpg-dependent pgam) (dpgm) K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D PERMA_0022 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D PERMA_1594 transporter, major facilitator family K06902 UMF1; MFS transporter, UMF1 family
C 04121 Ubiquitin system [BR:pmx04121]
C 03051 Proteasome
C 03032 DNA replication proteins [BR:pmx03032]
D PERMA_0423 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D PERMA_0251 putative modification methylase FnuDI K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D PERMA_1597 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D PERMA_1789 DNA-binding protein HU 1 (DNA-binding protein II) (HB) K03530 hupB; DNA-binding protein HU-beta
D PERMA_0685 DNA-binding protein HU 1 (DNA-binding protein II) (HB) K05788 ihfB; integration host factor subunit beta
D PERMA_1382 histone family protein DNA-binding protein K05788 ihfB; integration host factor subunit beta
D PERMA_0909 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D PERMA_1295 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D PERMA_A0011 DNA replication protein DnaC K02315 dnaC; DNA replication protein DnaC
D PERMA_0545 DNA replication protein DnaC K02315 dnaC; DNA replication protein DnaC
D PERMA_1790 hypothetical protein K02315 dnaC; DNA replication protein DnaC
D PERMA_1674 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D PERMA_1292 single-strand binding protein family protein K03111 ssb; single-strand DNA-binding protein
D PERMA_0903 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D PERMA_1539 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D PERMA_1759 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D PERMA_0168 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D PERMA_0840 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PERMA_0590 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PERMA_0534 dnaX; DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D PERMA_0363 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D PERMA_1840 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D PERMA_1562 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D PERMA_1540 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D PERMA_1975 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D PERMA_A0059 DNA topoisomerase 1 (DNA topoisomerase I) (Omega-protein) (Relaxing enzyme) (Untwisting enzyme) (Swivelase) K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
D PERMA_0402 rgy; reverse gyrase K03170 topG; reverse gyrase [EC:5.6.2.2 5.6.2.-]
C 03036 Chromosome and associated proteins [BR:pmx03036]
D PERMA_0251 putative modification methylase FnuDI K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D PERMA_0511 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D PERMA_1597 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D PERMA_1789 DNA-binding protein HU 1 (DNA-binding protein II) (HB) K03530 hupB; DNA-binding protein HU-beta
D PERMA_0685 DNA-binding protein HU 1 (DNA-binding protein II) (HB) K05788 ihfB; integration host factor subunit beta
D PERMA_1382 histone family protein DNA-binding protein K05788 ihfB; integration host factor subunit beta
D PERMA_0909 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D PERMA_1428 hfq_2; RNA chaperone Hfq K03666 hfq; host factor-I protein
D PERMA_0539 hfq_1; RNA chaperone Hfq K03666 hfq; host factor-I protein
D PERMA_1923 smc; chromosome segregation protein SMC K03529 smc; chromosome segregation protein
D PERMA_1269 ScpA/B protein K05896 scpA; segregation and condensation protein A
D PERMA_0618 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D PERMA_1637 putative septum formation initiator K05589 ftsB; cell division protein FtsB
D PERMA_0674 division specific D,D-transpeptidase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D PERMA_0675 ftsL; cell division protein FtsL K03586 ftsL; cell division protein FtsL
D PERMA_0619 putative polypeptide-transport-associated domain protein FtsQ-type K03589 ftsQ; cell division protein FtsQ
D PERMA_0623 cell cycle protein K03588 ftsW; cell division protein FtsW
D PERMA_0617 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D PERMA_0450 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D PERMA_1480 acriflavin resistance protein AcrE K03585 acrA; membrane fusion protein, multidrug efflux system
D PERMA_1390 minC; septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D PERMA_1391 minD; septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D PERMA_1392 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D PERMA_0057 Rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D PERMA_0056 mreC; rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D PERMA_0053 mrdB; rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA
D PERMA_0812 chromosome partitioning protein, ATPase ParA K03496 parA; chromosome partitioning protein
D PERMA_0813 putative ParB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D PERMA_0790 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D PERMA_1607 gidB; 16S rRNA methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D PERMA_0159 trmFO; tRNA:M(5)U-54 methyltransferase K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74]
D PERMA_0865 phage integrase family protein K04763 xerD; integrase/recombinase XerD
D PERMA_A0012 putative integrase/recombinase K04763 xerD; integrase/recombinase XerD
D PERMA_1064 ATPase involved in chromosome partitioning K03593 mrp; ATP-binding protein involved in chromosome partitioning
D PERMA_1326 ysxC; ribosome biogenesis GTP-binding protein YsxC K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:pmx03400]
D PERMA_0250 T/G-specific DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D PERMA_0457 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D PERMA_0607 probable endonuclease III (DNA-(apurinic orapyrimidinic site) lyase) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D PERMA_1253 adp-ribose pyrophosphatase (adp-ribose diphosphatase)(adenosine diphosphoribose pyrophosphatase) (adpr-ppase) (adp-ribosephosphohydrolase) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D PERMA_1056 MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D PERMA_0425 uracil-DNA glycosylase family 4 protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D PERMA_1509 probable endonuclease 4 (Endonuclease IV)(Endodeoxyribonuclease IV) K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D PERMA_1074 endonuclease V (Deoxyinosine 3'endonuclease)(Deoxyribonuclease V) (DNase V) K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
D PERMA_0132 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D PERMA_1840 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D PERMA_1332 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D PERMA_0777 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
D PERMA_0927 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D PERMA_0992 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D PERMA_1189 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D PERMA_1190 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D PERMA_1224 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D PERMA_1423 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D PERMA_1086 transcription-repair-coupling factor (trcf) (ATP-dependent helicase mfd) K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D PERMA_0758 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D PERMA_1550 MutS2 protein K07456 mutS2; DNA mismatch repair protein MutS2
D PERMA_0003 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D PERMA_0903 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D PERMA_1539 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D PERMA_1759 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D PERMA_0168 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D PERMA_0840 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PERMA_0590 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PERMA_0534 dnaX; DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D PERMA_1292 single-strand binding protein family protein K03111 ssb; single-strand DNA-binding protein
D PERMA_1973 recA; protein RecA K03553 recA; recombination protein RecA
D PERMA_1583 ruvA; holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D PERMA_1760 ruvB; holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D PERMA_0078 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D PERMA_0652 crossover junction endodeoxyribonuclease RusA (Hollidayjunction nuclease rusA) (Holliday junction resolvase) K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]
D PERMA_1753 putative primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D PERMA_1599 putative DNA double-strand break repair protein Rad50 K03546 sbcC; DNA repair protein SbcC/Rad50
D PERMA_0984 metallophosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11
D PERMA_0424 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D PERMA_1109 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D PERMA_0327 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D PERMA_0532 recR; recombination protein RecR K06187 recR; recombination protein RecR
D PERMA_0874 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D PERMA_1343 cas_4; crispr-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
D PERMA_1811 holliday junction resolvase Hjc K03552 hjr; holliday junction resolvase [EC:3.1.21.10]
D PERMA_1833 universally conserved protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
D PERMA_1562 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D PERMA_1540 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D PERMA_1975 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D PERMA_1597 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D PERMA_1789 DNA-binding protein HU 1 (DNA-binding protein II) (HB) K03530 hupB; DNA-binding protein HU-beta
D PERMA_0685 DNA-binding protein HU 1 (DNA-binding protein II) (HB) K05788 ihfB; integration host factor subunit beta
D PERMA_1382 histone family protein DNA-binding protein K05788 ihfB; integration host factor subunit beta
D PERMA_1538 lexA; repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D PERMA_1534 DNA polymerase 2 (DNA polymerase II) (DNA polymerase B2) K02336 polB; DNA polymerase II [EC:2.7.7.7]
D PERMA_1971 recX; regulatory protein RecX K03565 recX; regulatory protein
D PERMA_1909 DNA polymerase beta family K02347 polX; DNA polymerase (family X)
D PERMA_0859 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D PERMA_0551 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D PERMA_0549 ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D PERMA_0455 phosphoesterase, RecJ domain protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
C 03029 Mitochondrial biogenesis [BR:pmx03029]
D PERMA_0587 cytochrome B K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D PERMA_0238 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D PERMA_0498 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D PERMA_0232 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts
D PERMA_1180 tuf_1; translation elongation factor Tu K02358 tuf; elongation factor Tu
D PERMA_1194 tuf_2; translation elongation factor Tu K02358 tuf; elongation factor Tu
D PERMA_1193 fusA; translation elongation factor G K02355 fusA; elongation factor G
D PERMA_0644 era; GTP-binding protein Era K03595 era; GTPase
D PERMA_0176 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D PERMA_0784 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D PERMA_0091 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D PERMA_0595 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D PERMA_1486 glutamyl-tRNA(Gln) amidotransferase subunit A (Glu-ADTsubunit A) K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D PERMA_0555 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (Asp/Glu-ADT subunit B) K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D PERMA_1974 gatC; glutamyl-tRNA(Gln) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D PERMA_1292 single-strand binding protein family protein K03111 ssb; single-strand DNA-binding protein
D PERMA_1740 yaeT; outer membrane protein assembly complex, YaeT protein K07277 SAM50; outer membrane protein insertion porin family
D PERMA_1662 putative outer membrane protein, OMP85 family K07277 SAM50; outer membrane protein insertion porin family
D PERMA_0751 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D PERMA_0981 grpE; co-chaperone GrpE K03687 GRPE; molecular chaperone GrpE
D PERMA_2026 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PERMA_0001 groS_1; chaperonin GroS K04078 groES; chaperonin GroES
D PERMA_2027 groS_2; chaperonin GroS K04078 groES; chaperonin GroES
D PERMA_1845 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D PERMA_0979 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D PERMA_0218 cysteine desulfurase (Nitrogenase metalloclustersbiosynthesis protein NifS) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PERMA_1065 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PERMA_1064 ATPase involved in chromosome partitioning K03593 mrp; ATP-binding protein involved in chromosome partitioning
D PERMA_0196 inner membrane protein OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase
D PERMA_1265 electron transport protein SCO1/SenC K07152 SCO1; protein SCO1
D PERMA_0419 electron transport protein SCO1/SenC K07152 SCO1; protein SCO1
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:pmx02000]
D PERMA_0446 ABC transporter K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D PERMA_0991 multidrug ABC transporter, ATP-binding protein K06148 ABCC-BAC; ATP-binding cassette, subfamily C, bacterial
D PERMA_1918 modA; molybdate ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D PERMA_1916 modB; molybdate ABC transporter, permease protein K02018 modB; molybdate transport system permease protein
D PERMA_1915 spermidine/putrescine import ATP-binding protein PotA K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D PERMA_1236 ABC-type nitrate/sulfonate/bicarbonate transport system protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D PERMA_1353 putative membrane protein K02069 STAR2; UDP-glucose/iron transport system permease protein
D PERMA_1477 mce related protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D PERMA_1296 ABC-type transport system involved in resistance to organic solvents, permease component K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D PERMA_0256 ABC transporter K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D PERMA_1572 pstS; phosphate ABC transporter, phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D PERMA_1573 pstC; phosphate ABC transporter, permease protein PstC K02037 pstC; phosphate transport system permease protein
D PERMA_1574 pstA; phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein
D PERMA_1575 pstB; phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D PERMA_1125 transporter K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D PERMA_1039 oligopeptide transport system permease protein AppB K02033 ABC.PE.P; peptide/nickel transport system permease protein
D PERMA_1038 oligopeptide transport system permease protein AppC K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D PERMA_1100 glutathione import ATP-binding protein GsiA K02031 ddpD; peptide/nickel transport system ATP-binding protein
D PERMA_1602 oligopeptide transport ATP-binding protein AppF K02032 ddpF; peptide/nickel transport system ATP-binding protein
D PERMA_0938 periplasmic solute binding protein family K09815 znuA; zinc transport system substrate-binding protein
D PERMA_0462 ABC-3 protein K09816 znuB; zinc transport system permease protein
D PERMA_0463 manganese transport system ATP-binding protein MntA K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D PERMA_0828 ABC type permease K02008 cbiQ; cobalt/nickel transport system permease protein
D PERMA_0830 CbiM K02007 cbiM; cobalt/nickel transport system permease protein
D PERMA_0920 cobalt import ATP-binding protein CbiO 1 K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D PERMA_0833 conserved hypothetical protein K10094 cbiK; nickel transport protein
D PERMA_0832 conserved hypothetical protein K16915 cbiL; nickel transport protein
D PERMA_1721 putative permease, YjgP/YjgQ family K07091 lptF; lipopolysaccharide export system permease protein
D PERMA_0229 putative permease, YjgP/YjgQ family K11720 lptG; lipopolysaccharide export system permease protein
D PERMA_1853 ABC transporter K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D PERMA_1262 nitrous-oxide metabolic protein NosY K19341 nosY; Cu-processing system permease protein
D PERMA_1261 copper-transport ATP-binding protein NosF K19340 nosF; Cu-processing system ATP-binding protein
D PERMA_0810 multidrug ABC transporter K25181 ybhS; drug efflux transport system permease protein
D PERMA_0808 multidrug ABC transporter K25182 ybhF; drug efflux transport system ATP-binding protein
D PERMA_0806 efflux system, membrane fusion protein K25183 ybhG; membrane fusion protein YbhG
D PERMA_1737 lipoprotein releasing system, transmembrane protein, LolC/E family K09808 lolC_E; lipoprotein-releasing system permease protein
D PERMA_1738 lipoprotein-releasing system ATP-binding protein LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D PERMA_0811 multidrug ABC transporter, permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D PERMA_1484 ABC-type transport system, permease component K02004 ABC.CD.P; putative ABC transport system permease protein
D PERMA_1485 macrolide export ATP-binding/permease protein MacB K02004 ABC.CD.P; putative ABC transport system permease protein
D PERMA_0680 macrolide export ATP-binding/permease protein MacB K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D PERMA_1055 anion transporter K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5
D PERMA_1144 sodium-driven multidrug efflux pump protein K26939 norM; MATE family, multidrug efflux pump
D PERMA_1526 general substrate transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D PERMA_0890 major facilitator family transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D PERMA_0805 major facilitator family transporter K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D PERMA_1594 transporter, major facilitator family K06902 UMF1; MFS transporter, UMF1 family
D PERMA_1900 TrkA-N domain family protein K10716 kch; voltage-gated potassium channel
D PERMA_1096 putative potassium channel protein K10716 kch; voltage-gated potassium channel
D PERMA_2024 ammonium transporter NrgA (Membrane protein nrgA) (Protein amtB) K03320 amt; ammonium transporter, Amt family
D PERMA_0121 ammonium transporter NrgA (Membrane protein nrgA) (Protein amtB) K03320 amt; ammonium transporter, Amt family
D PERMA_0699 putative von Willebrand factor type A domain protein K07114 yfbK; Ca-activated chloride channel homolog
D PERMA_0701 putative von Willebrand factor, type A K07114 yfbK; Ca-activated chloride channel homolog
D PERMA_0846 mechanosensitive ion channel MscS K16052 ynaI; MscS family membrane protein
D PERMA_0645 mgtE; magnesium transporter K06213 mgtE; magnesium transporter
D PERMA_0084 chemotaxis protein PomA K02556 motA; chemotaxis protein MotA
D PERMA_0085 flagellar motor protein MotB K02557 motB; chemotaxis protein MotB
D PERMA_0086 OmpA family protein K02557 motB; chemotaxis protein MotB
D PERMA_1968 MotA/TolQ/ExbB proton channel family protein K03561 exbB; biopolymer transport protein ExbB
D PERMA_0420 biopolymer transport protein ExbB K03561 exbB; biopolymer transport protein ExbB
D PERMA_1967 biopolymer transport protein ExbD/TolR K03559 exbD; biopolymer transport protein ExbD
D PERMA_0421 biopolymer transport protein ExbD K03560 tolR; biopolymer transport protein TolR
D PERMA_1612 corA; magnesium and cobalt transport protein CorA K03284 corA; magnesium transporter
D PERMA_0270 crcB; CrcB protein K06199 crcB; fluoride exporter
D PERMA_1603 CBS/transporter-associated domain protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D PERMA_1605 hemolysin K03699 tlyC; magnesium and cobalt exporter, CNNM family
D PERMA_1949 hypothetical protein K16079 omp31; outer membrane immunogenic protein
D PERMA_0666 membrane protein involved in aromatic hydrocarbon degradation K06076 fadL; long-chain fatty acid transport protein
D PERMA_1925 membrane protein K06076 fadL; long-chain fatty acid transport protein
D PERMA_0438 putative P pilus assembly, fimbrial Usher protein K07347 fimD; outer membrane usher protein
D PERMA_1692 TonB-dependent receptor K16092 btuB; vitamin B12 transporter
D PERMA_1266 outer membrane protein C K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D PERMA_0352 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D PERMA_0877 outer membrane efflux protein K15725 czcC; outer membrane protein, heavy metal efflux system
D PERMA_0682 outer membrane efflux protein K12340 tolC; outer membrane protein
D PERMA_0803 outer membrane efflux protein K12340 tolC; outer membrane protein
D PERMA_1544 outer membrane efflux protein K12340 tolC; outer membrane protein
D PERMA_1740 yaeT; outer membrane protein assembly complex, YaeT protein K07277 SAM50; outer membrane protein insertion porin family
D PERMA_1662 putative outer membrane protein, OMP85 family K07277 SAM50; outer membrane protein insertion porin family
D PERMA_0997 conserved hypothetical protein K05807 bamD; outer membrane protein assembly factor BamD
D PERMA_1561 conserved hypothetical protein K09800 tamB; translocation and assembly module TamB
D PERMA_1724 lptA; lipopolysaccharide transport periplasmic protein LptA K09774 lptA; lipopolysaccharide export system protein LptA
D PERMA_0537 putative organic solvent tolerance protein K04744 lptD; LPS-assembly protein
D PERMA_0872 cation efflux protein K16264 czcD; cobalt-zinc-cadmium efflux system protein
D PERMA_1108 GufA protein K07238 TC.ZIP; zinc transporter, ZIP family
D PERMA_0879 cation efflux system protein CzcA K15726 czcA; heavy metal efflux system protein
D PERMA_0854 cation efflux system protein CusA K07787 cusA; copper/silver efflux system protein
D PERMA_0042 sodium/calcium exchanger K07301 yrbG; cation:H+ antiporter
D PERMA_1015 sodium/calcium exchanger membrane region K07301 yrbG; cation:H+ antiporter
D PERMA_0838 sodium/solute symporter family protein K14393 actP; cation/acetate symporter
D PERMA_0160 GerN K26730 napA; Na+:H+ antiporter
D PERMA_1093 TrkA domain protein K07228 khtT; K+:H+ antiporter subunit KhtT
D PERMA_1094 sodium/hydrogen exchanger K26732 khtU; K+:H+ antiporter subunit KhtU
D PERMA_1271 Trk system, membrane component K03498 trkH; trk/ktr system potassium uptake protein
D PERMA_1272 TrkA-N domain family protein K03499 trkA; trk/ktr system potassium uptake protein
D PERMA_0592 TrkA-N domain family protein K03499 trkA; trk/ktr system potassium uptake protein
D PERMA_1270 chloride channel protein K03281 clcA; chloride channel protein, CIC family
D PERMA_0021 mviN; integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase
D PERMA_0215 putative integral membrane protein K24180 mleP; malate permease and related proteins
D PERMA_1351 putative rubrerythrin subfamily K22736 VIT; vacuolar iron transporter family protein
D PERMA_0623 cell cycle protein K03588 ftsW; cell division protein FtsW
D PERMA_0422 TonB family C-domain protein K03832 tonB; periplasmic protein TonB
D PERMA_1483 hypothetical protein K03832 tonB; periplasmic protein TonB
D PERMA_1742 C-type cytochrome biogenesis protein K06196 ccdA; cytochrome c-type biogenesis protein
D PERMA_0804 multidrug-efflux transporter, MFS family K03543 emrA; membrane fusion protein, multidrug efflux system
D PERMA_0878 cation efflux system K15727 czcB; membrane fusion protein, heavy metal efflux system
D PERMA_0853 chemiosmotic efflux system B protein B K07798 cusB; membrane fusion protein, copper/silver efflux system
D PERMA_1480 acriflavin resistance protein AcrE K03585 acrA; membrane fusion protein, multidrug efflux system
D PERMA_0466 conserved domain protein K04758 feoA; ferrous iron transport protein A
D PERMA_0465 feoB; ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B
C 02044 Secretion system [BR:pmx02044]
D PERMA_0682 outer membrane efflux protein K12340 tolC; outer membrane protein
D PERMA_0803 outer membrane efflux protein K12340 tolC; outer membrane protein
D PERMA_1544 outer membrane efflux protein K12340 tolC; outer membrane protein
D PERMA_0968 peptidoglycan-binding domain 1 protein K02450 gspA; general secretion pathway protein A
D PERMA_1723 general secretion pathway protein A K02450 gspA; general secretion pathway protein A
D PERMA_1370 peptidoglycan-binding domain 1 protein K02450 gspA; general secretion pathway protein A
D PERMA_0823 gspD; general secretion pathway protein D K02453 gspD; general secretion pathway protein D
D PERMA_0824 general secretion pathway protein E (Type II traffic warden ATPase)(Cholera toxin secretion protein EpsE) K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D PERMA_0814 gspG; general secretion pathway protein G K02456 gspG; general secretion pathway protein G
D PERMA_0817 conserved hypothetical protein K02460 gspK; general secretion pathway protein K
D PERMA_0819 hypothetical protein K02462 gspM; general secretion pathway protein M
D PERMA_1933 leader peptidase PppA K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D PERMA_1148 prokaryotic N-methylation motif domain protein K02650 pilA; type IV pilus assembly protein PilA
D PERMA_1149 fimbrillin K02650 pilA; type IV pilus assembly protein PilA
D PERMA_0209 type IV pilus assembly protein TapB K02652 pilB; type IV pilus assembly protein PilB
D PERMA_0977 type IV pilus assembly protein TapB K02652 pilB; type IV pilus assembly protein PilB
D PERMA_1506 type IV pilus assembly protein TapB K02652 pilB; type IV pilus assembly protein PilB
D PERMA_0826 fimbrial assembly protein PilC2 K02653 pilC; type IV pilus assembly protein PilC
D PERMA_1504 pilC; type IV pilus biogenesis protein PilC K02653 pilC; type IV pilus assembly protein PilC
D PERMA_0567 hypothetical protein K02662 pilM; type IV pilus assembly protein PilM
D PERMA_0566 Fimbrial assembly protein K02663 pilN; type IV pilus assembly protein PilN
D PERMA_0563 fimbrial assembly protein PilQ K02666 pilQ; type IV pilus assembly protein PilQ
D PERMA_1972 twitching mobility protein K02669 pilT; twitching motility protein PilT
D PERMA_1505 twitching mobility protein K02669 pilT; twitching motility protein PilT
D PERMA_1152 prokaryotic N-methylation motif domain protein K02671 pilV; type IV pilus assembly protein PilV
D PERMA_1151 prokaryotic N-methylation motif domain protein K02672 pilW; type IV pilus assembly protein PilW
D PERMA_1154 conserved hypothetical protein K02674 pilY1; type IV pilus assembly protein PilY1
D PERMA_0972 putative pilus K12282 mshL; MSHA biogenesis protein MshL
D PERMA_1227 yggt family protein K02221 yggT; YggT family protein
D PERMA_0488 putative competence protein ComEA helix-hairpin-helix repeat protein K02237 comEA; competence protein ComEA
D PERMA_2021 competence protein K02238 comEC; competence protein ComEC
D PERMA_2010 beta-lactamase domain protein K02238 comEC; competence protein ComEC
D PERMA_1665 phosphoribosyltransferase K02242 comFC; competence protein ComFC
D PERMA_0726 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D PERMA_0706 flhB; flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D PERMA_0112 flagellar biosynthetic protein FlhB K04061 flhB2; flagellar biosynthesis protein
D PERMA_0717 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D PERMA_0716 hypothetical protein K02411 fliH; flagellar assembly protein FliH
D PERMA_0715 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D PERMA_0733 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D PERMA_0711 flagellar motor switch phosphatase FliY K02417 fliN; flagellar motor switch protein FliN
D PERMA_1547 hypothetical protein K02417 fliN; flagellar motor switch protein FliN
D PERMA_0709 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D PERMA_0708 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D PERMA_0707 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D PERMA_A0031 putative membrane protein K12056 traG; conjugal transfer mating pair stabilization protein TraG
D PERMA_A0033 hypothetical protein K12057 traF; conjugal transfer pilus assembly protein TraF
D PERMA_A0019 hypothetical protein K12058 traN; conjugal transfer mating pair stabilization protein TraN
D PERMA_A0023 putative TraU K12060 traU; conjugal transfer pilus assembly protein TraU
D PERMA_A0024 hypothetical protein K12061 traW; conjugal transfer pilus assembly protein TraW
D PERMA_A0037 traC; type-IV secretion system protein TraC K12063 traC; conjugal transfer ATP-binding protein TraC
D PERMA_A0038 traV; type IV conjugative transfer system protein TraV K12064 traV; conjugal transfer pilus assembly protein TraV
D PERMA_A0042 TraB pilus assembly family protein K12065 traB; conjugal transfer pilus assembly protein TraB
D PERMA_A0045 traE; type IV conjugative transfer system protein TraE K12067 traE; conjugal transfer pilus assembly protein TraE
D PERMA_A0046 traL; type IV conjugative transfer system protein TraL K12068 traL; conjugal transfer pilus assembly protein TraL
D PERMA_A0039 thiol:disulfide interchange protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D PERMA_1102 protein disulfide isomerase K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D PERMA_A0032 hypothetical protein K12072 traH; conjugative transfer pilus assembly protein TraH
D PERMA_0440 hypothetical protein K07346 fimC; fimbrial chaperone protein
D PERMA_0438 putative P pilus assembly, fimbrial Usher protein K07347 fimD; outer membrane usher protein
D PERMA_0441 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D PERMA_1521 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D PERMA_1555 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D PERMA_1183 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D PERMA_1553 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D PERMA_1045 preprotein translocase SecG subunit K03075 secG; preprotein translocase subunit SecG
D PERMA_1216 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D PERMA_1433 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D PERMA_0103 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D PERMA_0065 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D PERMA_0196 inner membrane protein OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase
D PERMA_1173 conserved domain protein K03116 tatA; sec-independent protein translocase protein TatA
D PERMA_1661 twin-arginine translocation system component TatB K03117 tatB; sec-independent protein translocase protein TatB
D PERMA_1660 tatC; twin arginine-targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:pmx02042]
D PERMA_1603 CBS/transporter-associated domain protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D PERMA_1605 hemolysin K03699 tlyC; magnesium and cobalt exporter, CNNM family
C 02022 Two-component system [BR:pmx02022]
D PERMA_1577 phosphate regulon sensor protein PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D PERMA_1679 alkaline phosphatase synthesis transcriptional regulatory proteinphoP K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D PERMA_0951 periplasmic sensor signal transduction histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D PERMA_0796 putative nitrogen regulation protein NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D PERMA_0797 nitrogen regulation protein K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D PERMA_1042 putative nitrogen regulation protein NtrY K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D PERMA_0337 nitrogen assimilation regulatory protein NtrX K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX
D PERMA_1894 acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) K07714 atoC; two-component system, NtrC family, response regulator AtoC
D PERMA_1425 type 4 fimbriae expression regulatory protein PilR K02667 pilR; two-component system, NtrC family, response regulator PilR
D PERMA_1548 sensor histidine kinase/response regulator K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D PERMA_0742 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D PERMA_0739 chemotactic response regulator CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D PERMA_0744 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D PERMA_0740 chemotactic response regulator CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D PERMA_1497 cell division response regulator DivK K11443 divK; two-component system, cell cycle response regulator DivK
C 02035 Bacterial motility proteins [BR:pmx02035]
D PERMA_0742 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D PERMA_0741 purine-binding chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D PERMA_0745 cheR; CheR methyltransferase, SAM binding domain protein K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D PERMA_0900 chemotaxis protein methyltransferase 2 K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D PERMA_0744 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D PERMA_0739 chemotactic response regulator CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D PERMA_0740 chemotactic response regulator CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D PERMA_1487 Methyl-accepting chemotaxis protein signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein
D PERMA_0401 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D PERMA_0737 putative methyl-accepting chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein
D PERMA_0738 Methyl-accepting chemotaxis protein signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein
D PERMA_0716 hypothetical protein K02411 fliH; flagellar assembly protein FliH
D PERMA_0715 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D PERMA_0709 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D PERMA_0708 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D PERMA_0707 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D PERMA_0726 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D PERMA_0706 flhB; flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D PERMA_0735 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D PERMA_0734 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D PERMA_0733 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D PERMA_0711 flagellar motor switch phosphatase FliY K02417 fliN; flagellar motor switch protein FliN
D PERMA_1547 hypothetical protein K02417 fliN; flagellar motor switch protein FliN
D PERMA_0717 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D PERMA_0728 flgI; flagellar P-ring protein FlgI K02394 flgI; flagellar P-ring protein FlgI
D PERMA_0730 putative flagellar protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D PERMA_0729 flgH; flagellar L-ring protein FlgH K02393 flgH; flagellar L-ring protein FlgH
D PERMA_0712 fliL; flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL
D PERMA_0718 fliE; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D PERMA_0720 flgB; flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D PERMA_0719 flgC; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D PERMA_0714 flagellar hook capping protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD
D PERMA_0732 flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D PERMA_0731 flgG; flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D PERMA_0727 conserved hypothetical protein K02395 flgJ; peptidoglycan hydrolase FlgJ
D PERMA_0713 flagellar basal body and hook protein FlgE K02390 flgE; flagellar hook protein FlgE
D PERMA_1614 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D PERMA_1615 flgL; flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D PERMA_1620 flagellar filament 34.5 kDa core protein (Class B) K02406 fliC; flagellin
D PERMA_1618 putative flagellar hook-associated protein 2 FliD K02407 fliD; flagellar hook-associated protein 2
D PERMA_1617 fliS; flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D PERMA_1400 RNA polymerase sigma-D factor (Sigma-28) K02405 fliA; RNA polymerase sigma factor FliA
D PERMA_0723 RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA
D PERMA_0084 chemotaxis protein PomA K02556 motA; chemotaxis protein MotA
D PERMA_0085 flagellar motor protein MotB K02557 motB; chemotaxis protein MotB
D PERMA_0086 OmpA family protein K02557 motB; chemotaxis protein MotB
D PERMA_0217 anti sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D PERMA_1619 flagellar protein FlaG K06603 flaG; flagellar protein FlaG
D PERMA_0725 flhF; flagellar biosynthetic protein FlhF K02404 flhF; flagellar biosynthesis protein FlhF
D PERMA_1402 GTP-binding signal recognition particle SRP54 G-domain protein K02404 flhF; flagellar biosynthesis protein FlhF
D PERMA_0724 flagellar biosynthesis switch protein FlhG K04562 flhG; flagellar biosynthesis protein FlhG
D PERMA_1401 cobyrinic Acid a,c-diamide synthase K04562 flhG; flagellar biosynthesis protein FlhG
D PERMA_1425 type 4 fimbriae expression regulatory protein PilR K02667 pilR; two-component system, NtrC family, response regulator PilR
D PERMA_1972 twitching mobility protein K02669 pilT; twitching motility protein PilT
D PERMA_1505 twitching mobility protein K02669 pilT; twitching motility protein PilT
D PERMA_1148 prokaryotic N-methylation motif domain protein K02650 pilA; type IV pilus assembly protein PilA
D PERMA_1149 fimbrillin K02650 pilA; type IV pilus assembly protein PilA
D PERMA_0209 type IV pilus assembly protein TapB K02652 pilB; type IV pilus assembly protein PilB
D PERMA_0977 type IV pilus assembly protein TapB K02652 pilB; type IV pilus assembly protein PilB
D PERMA_1506 type IV pilus assembly protein TapB K02652 pilB; type IV pilus assembly protein PilB
D PERMA_0826 fimbrial assembly protein PilC2 K02653 pilC; type IV pilus assembly protein PilC
D PERMA_1504 pilC; type IV pilus biogenesis protein PilC K02653 pilC; type IV pilus assembly protein PilC
D PERMA_1933 leader peptidase PppA K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D PERMA_0563 fimbrial assembly protein PilQ K02666 pilQ; type IV pilus assembly protein PilQ
D PERMA_0566 Fimbrial assembly protein K02663 pilN; type IV pilus assembly protein PilN
D PERMA_0567 hypothetical protein K02662 pilM; type IV pilus assembly protein PilM
D PERMA_1152 prokaryotic N-methylation motif domain protein K02671 pilV; type IV pilus assembly protein PilV
D PERMA_1151 prokaryotic N-methylation motif domain protein K02672 pilW; type IV pilus assembly protein PilW
D PERMA_1154 conserved hypothetical protein K02674 pilY1; type IV pilus assembly protein PilY1
D PERMA_0440 hypothetical protein K07346 fimC; fimbrial chaperone protein
D PERMA_0438 putative P pilus assembly, fimbrial Usher protein K07347 fimD; outer membrane usher protein
D PERMA_0441 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:pmx04812]
D PERMA_0113 conserved hypothetical protein K06990 MEMO1; MEMO1 family protein
D PERMA_0057 Rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D PERMA_0617 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D PERMA_0618 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D PERMA_1390 minC; septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D PERMA_1391 minD; septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D PERMA_1392 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D PERMA_0812 chromosome partitioning protein, ATPase ParA K03496 parA; chromosome partitioning protein
D PERMA_0813 putative ParB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:pmx04147]
D PERMA_1636 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D PERMA_0470 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D PERMA_0022 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D PERMA_2026 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PERMA_0751 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D PERMA_1557 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D PERMA_0224 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D PERMA_1180 tuf_1; translation elongation factor Tu K02358 tuf; elongation factor Tu
D PERMA_1194 tuf_2; translation elongation factor Tu K02358 tuf; elongation factor Tu
D PERMA_0541 histidine triad nucleotide-binding protein 2 K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D PERMA_1167 long-chain-fatty-acid CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PERMA_1924 2-succinylbenzoate--CoA ligase (OSB-CoA synthetase) (o-succinylbenzoyl-CoA synthetase) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PERMA_0556 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D PERMA_1217 adenylate kinase (ATP-AMP transphosphorylase) K00939 adk; adenylate kinase [EC:2.7.4.3]
D PERMA_0095 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D PERMA_1950 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D PERMA_0268 fbp; fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D PERMA_1586 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PERMA_0460 hemB; delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D PERMA_0333 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D PERMA_1500 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D PERMA_0560 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PERMA_1046 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D PERMA_1047 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (phosphoglyceromutase) (pgam) (bpg-dependent pgam) (dpgm) K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
C 02048 Prokaryotic defense system [BR:pmx02048]
D PERMA_1343 cas_4; crispr-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
D PERMA_1344 crispr-associated protein Cas2 K09951 cas2; CRISPR-associated protein Cas2
D PERMA_1338 crispr-associated helicase Cas3 K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D PERMA_1334 crispr-associated cxxc_cxxc protein Cst1 K19088 cst1; CRISPR-associated protein Cst1
D PERMA_1335 cst; crispr-associated regulatory protein, devr family K19075 cst2; CRISPR-associated protein Cst2
D PERMA_1340 cas_3; crispr-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D PERMA_A0049 conserved hypothetical protein K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D PERMA_1337 cas5t; crispr-associated protein Cas5, tneap subtype K19090 cas5t; CRISPR-associated protein Cas5t
D PERMA_1333 cas_2; crispr-associated protein Cas6 K19091 cas6; CRISPR-associated endoribonuclease Cas6 [EC:3.1.-.-]
D PERMA_1765 cas_5; crispr-associated protein Cas6 K19091 cas6; CRISPR-associated endoribonuclease Cas6 [EC:3.1.-.-]
D PERMA_1090 cas_1; crispr-associated protein Cas6 K19091 cas6; CRISPR-associated endoribonuclease Cas6 [EC:3.1.-.-]
D PERMA_1307 hsdR; type I restriction enzyme R protein (HsdR) K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D PERMA_1309 type I restriction-modification system specificty subunit K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D PERMA_1311 hsdM; type I restriction enzyme M protein (HsdM) K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D PERMA_0251 putative modification methylase FnuDI K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D PERMA_A0025 DNA-damage-inducible protein J K07473 dinJ; DNA-damage-inducible protein J
D PERMA_1869 PilT protein domain protein K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
D PERMA_1868 putative virulence protein K18829 mvpT; antitoxin VapB
D PERMA_0617 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D PERMA_0057 Rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D PERMA_0218 cysteine desulfurase (Nitrogenase metalloclustersbiosynthesis protein NifS) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PERMA_1065 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules [BR:pmx04090]
C 01504 Antimicrobial resistance genes [BR:pmx01504]
D PERMA_1480 acriflavin resistance protein AcrE K03585 acrA; membrane fusion protein, multidrug efflux system
D PERMA_0682 outer membrane efflux protein K12340 tolC; outer membrane protein
D PERMA_0803 outer membrane efflux protein K12340 tolC; outer membrane protein
D PERMA_1544 outer membrane efflux protein K12340 tolC; outer membrane protein
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:pmx03100]
D PERMA_0206 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PERMA_1139 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PERMA_1939 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PERMA_1943 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PERMA_0201 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PERMA_1510 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PERMA_1946 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D PERMA_0278 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D PERMA_0672 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D PERMA_1287 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D PERMA_1170 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D PERMA_1178 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D PERMA_1604 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D PERMA_1303 tRNA-His K14226 tRNA-His; tRNA His
D PERMA_1138 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D PERMA_1940 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D PERMA_0955 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PERMA_1318 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PERMA_0253 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PERMA_1317 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PERMA_0512 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PERMA_1169 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D PERMA_0398 tRNA-Met K14230 tRNA-Met; tRNA Met
D PERMA_0765 tRNA-Met K14230 tRNA-Met; tRNA Met
D PERMA_1942 tRNA-Met K14230 tRNA-Met; tRNA Met
D PERMA_2016 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D PERMA_1944 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D PERMA_1381 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D PERMA_0383 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PERMA_1681 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PERMA_1828 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PERMA_1179 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D PERMA_1176 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D PERMA_1182 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D PERMA_1771 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D PERMA_1177 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D PERMA_0279 tRNA-Val K14237 tRNA-Val; tRNA Val
D PERMA_1171 tRNA-Val K14237 tRNA-Val; tRNA Val
D PERMA_1941 Small subunit ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PERMA_1137 Small subunit ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PERMA_1143 rrf_1; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D PERMA_1935 rrf_2; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D PERMA_0031 alcohol dehydrogenase K16216 yueD; benzil reductase ((S)-benzoin forming) [EC:1.1.1.320]
D PERMA_0689 ferredoxin-thioredoxin reductase catalytic chain, precursor (FTR-C) (Ferredoxin-thioredoxin reductasesubunit B) (FTR-B) (B1) K17892 FTRC; ferredoxin-thioredoxin reductase catalytic chain [EC:1.8.7.2]
D PERMA_0386 cytochrome c551 peroxidase (Cytochrome cperoxidase) K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5]
D PERMA_1429 cytochrome c551 peroxidase (Cytochrome cperoxidase) (CCP) K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5]
D PERMA_0365 bacterioferritin comigratory protein BCP K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D PERMA_1174 putative bacterioferritin comigratory protein K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D PERMA_0898 thiol peroxidase (Scavengase P20) K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D PERMA_0133 ahpC; alkyl hydroperoxide reductase, C subunit K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26]
D PERMA_0696 uptake hydrogenase large subunit (Hydrogenlyase)(Membrane-bound hydrogenase large subunit) K05922 hydB; quinone-reactive Ni/Fe-hydrogenase large subunit [EC:1.12.5.1]
D PERMA_0695 quinone-reactive Ni/Fe-hydrogenase small chain (Membrane-bound hydrogenase small subunit) (Hydrogen:quinoneoxidoreductase) K05927 hydA; quinone-reactive Ni/Fe-hydrogenase small subunit [EC:1.12.5.1]
D PERMA_1906 desulfoferrodoxin, ferrous iron-binding region K05919 dfx; superoxide reductase [EC:1.15.1.2]
D PERMA_0809 protein ArsC (Arsenate reductase) (Arsenical pumpmodifier) (Low molecular weight protein-tyrosine-phosphatase) K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4]
D PERMA_0296 anaerobic ribonucleoside-triphosphate reductase activating protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D PERMA_0856 [pyruvate formate-lyase]-activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D PERMA_1273 radical SAM domain protein K04070 pflX; putative pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D PERMA_0026 N-acetyltransferase, gnat family K22441 paiA; diamine N-acetyltransferase [EC:2.3.1.57]
D PERMA_1302 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D PERMA_1705 aat; leucyl/phenylalanyl-tRNA--protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D PERMA_1111 transglutaminase domain protein K22452 tgpA; protein-glutamine gamma-glutamyltransferase [EC:2.3.2.13]
D PERMA_1580 glycosyl transferase, group 2 family K21349 ggs; glucosylglycerate synthase [EC:2.4.1.268]
D PERMA_1439 conserved hypothetical protein K07057 bpsA; N4-bis(aminopropyl)spermidine synthase [EC:2.5.1.128]
D PERMA_0633 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D PERMA_1278 thiamine biosynthesis lipoprotein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D PERMA_0637 cdsA_2; phosphatidate cytidylyltransferase K18678 VTE5; phytol kinase [EC:2.7.1.182]
D PERMA_0170 glutamate ammonia ligase adenylyl-transferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D PERMA_1871 diguanylate cyclase with GAF sensor K13069 E2.7.7.65; diguanylate cyclase [EC:2.7.7.65]
D PERMA_1676 conserved hypothetical protein K18672 dacA; diadenylate cyclase [EC:2.7.7.85]
D PERMA_0500 CDP-alcohol phosphatidyltransferase K17884 E2.7.8.39; archaetidylinositol phosphate synthase [EC:2.7.8.39]
D PERMA_0154 CDP-alcohol phosphatidyltransferase K17884 E2.7.8.39; archaetidylinositol phosphate synthase [EC:2.7.8.39]
D PERMA_1650 appr-1-p processing domain protein K23518 MACROD; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106]
D PERMA_0956 4-hydroxybenzoyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D PERMA_1494 response regulator receiver modulated metal dependent phosphohydrolase K07814 K07814; cyclic di-GMP phosphodiesterase [EC:3.1.4.-]
D PERMA_0395 hydrolase, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D PERMA_0640 thermonuclease (TNase) (Micrococcal nuclease)(Staphylococcal nuclease) K01174 nuc; micrococcal nuclease [EC:3.1.31.1]
D PERMA_1608 N-glycosylase/DNA lyase K03653 K03653; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
D PERMA_0634 def_2; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D PERMA_0110 def_1; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D PERMA_0944 polysaccharide deacetylase K21478 icaB; poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase [EC:3.5.1.-]
D PERMA_1645 putative endoribonuclease L-PSP K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D PERMA_0702 moxR; ATPase, MoxR family K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D PERMA_1114 ATPase, AAA family K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D PERMA_1166 DUF62-containing protein K22205 E3.13.2.3; S-adenosyl-L-methionine hydrolase (adenosine-forming) [EC:3.13.2.3]
D PERMA_0264 yjef family protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D PERMA_0339 copper-transporting atpase Ran1 (protein responsive toantagonist 1) K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9]
D PERMA_1529 copper-translocating P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9]
D PERMA_1014 cation-transporting ATPase Pma1 K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]
C 99981 Carbohydrate metabolism
D PERMA_0945 sfsA; sugar fermentation stimulation protein K06206 sfsA; sugar fermentation stimulation protein A
C 99982 Energy metabolism
D PERMA_1837 conserved domain protein K05337 fer; ferredoxin
D PERMA_1598 conserved domain protein K05337 fer; ferredoxin
D PERMA_1067 nitrogen-fixing NifU domain protein K04488 iscU; nitrogen fixation protein NifU and related proteins
D PERMA_0304 periplasmic nitrate reductase component NapD K02570 napD; periplasmic nitrate reductase NapD
D PERMA_0302 periplasmic nitrate reductase maturation protein NapF K02572 napF; ferredoxin-type protein NapF
D PERMA_0299 periplasmic nitrate reductase, ferredoxin-type protein NapG K02573 napG; ferredoxin-type protein NapG
D PERMA_0300 ferredoxin-type protein NapH K02574 napH; ferredoxin-type protein NapH
D PERMA_0999 putative ferredoxin-type protein, NapH/MauN family K02574 napH; ferredoxin-type protein NapH
D PERMA_0309 heme d1 biosynthesis protein NirF K19345 nirF; protein NirF
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D PERMA_0917 glyoxalase family protein K08234 yaeR; glyoxylase I family protein
D PERMA_0107 pyridoxal phosphate enzyme, YggS family K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
D PERMA_0800 putative membrane protein K07027 K07027; glycosyltransferase 2 family protein
C 99987 Cofactor metabolism
D PERMA_0308 heme d1 biosynthesis protein NirJ K24868 nirJ; heme d1 biosynthesis protein
D PERMA_1647 putative ubiquinone biosynthesis protein AarF K03688 ubiB; ubiquinone biosynthesis protein
D PERMA_1849 mobB; molybdopterin-guanine dinucleotide biosynthesis protein B K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein
C 99988 Secondary metabolism
C 99999 Others
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D PERMA_1024 conserved domain protein K03704 cspA; cold shock protein
C 99974 Translation
D PERMA_0582 metallo-beta-lactamase family protein K07576 K07576; metallo-beta-lactamase family protein
C 99975 Protein processing
D PERMA_1463 clpS; ATP-dependent Clp protease adaptor protein ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D PERMA_1323 tig; trigger factor K03545 tig; trigger factor
D PERMA_0604 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein
D PERMA_1010 hypC; hydrogenase assembly chaperone HypC/HupF K04653 hypC; hydrogenase expression/formation protein HypC
D PERMA_1013 hypD; hydrogenase expression/formation protein HypD K04654 hypD; hydrogenase expression/formation protein HypD
D PERMA_1016 hypE; hydrogenase expression/formation protein HypE K04655 hypE; hydrogenase expression/formation protein HypE
D PERMA_0705 hypF; (NiFe) hydrogenase maturation protein HypF K04656 hypF; hydrogenase maturation protein HypF
D PERMA_0845 HypF finger family K04656 hypF; hydrogenase maturation protein HypF
D PERMA_0380 putative Mg chelatase family protein K07391 comM; magnesium chelatase family protein
D PERMA_0773 putative OsmC family protein K07397 yhfA; putative redox protein
D PERMA_0105 nodulation competitiveness protein NfeD K07403 nfeD; membrane-bound serine protease (ClpP class)
C 99976 Replication and repair
D PERMA_1469 DNA repair protein RadC K03630 radC; DNA repair protein RadC
D PERMA_0080 endonuclease III K07457 K07457; endonuclease III related protein
D PERMA_0362 conserved hypothetical protein K07460 yraN; putative endonuclease
D PERMA_0241 protein smf (DNA-processing chain A) K04096 smf; DNA processing protein
D PERMA_1009 polysaccharide biosynthesis protein K07501 K07501; 3'-5' exonuclease
D PERMA_1314 TniA transposase K07497 K07497; putative transposase
C 99979 Viral proteins
C 99998 Others
D PERMA_0533 conserved hypothetical protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D PERMA_1727 sodium-dependent transporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
C 99978 Cell growth
D PERMA_1299 putative septation protein spoVG K06412 spoVG; stage V sporulation protein G
C 99993 Cell motility
C 99995 Signaling proteins
D PERMA_0925 typA; GTP-binding protein TypA/BipA K06207 typA; GTP-binding protein
D PERMA_1965 phosphate starvation-inducible protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D PERMA_1591 conserved hypothetical protein K07176 K07176; putative serine/threonine protein kinase
D PERMA_0839 putative nucleotidyltransferase family K07182 K07182; CBS domain-containing protein
C 99992 Structural proteins
D PERMA_1246 outer membrane lipoprotein carrier protein LolA K03634 lolA; outer membrane lipoprotein carrier protein
D PERMA_1741 conserved hypothetical protein K06142 hlpA; outer membrane protein
D PERMA_1165 outer membrane chaperone Skp K06142 hlpA; outer membrane protein
D PERMA_1300 conserved hypothetical protein K07283 ydiY; putative salt-induced outer membrane protein
D PERMA_1693 conserved hypothetical protein K07283 ydiY; putative salt-induced outer membrane protein
D PERMA_0681 secretion protein HlyD K02005 ABC.CD.TX; HlyD family secretion protein
D PERMA_1667 PerM protein K11744 tqsA; AI-2 transport protein TqsA
C 99994 Others
D PERMA_1576 phoU; phosphate transport system regulatory protein PhoU K02039 phoU; phosphate transport system protein
D PERMA_0755 periplasmic divalent cation tolerance protein K03926 cutA; periplasmic divalent cation tolerance protein
D PERMA_1769 conserved hypothetical protein K07216 hr; hemerythrin
D PERMA_1876 hemerythrin sipunculid K07216 hr; hemerythrin
D PERMA_1260 periplasmic copper-binding protein NosD K07218 nosD; nitrous oxidase accessory protein
D PERMA_0050 copper resistance protein B K07233 pcoB; copper resistance protein B
D PERMA_1259 nitrous-oxide reductase accessory protein NosL K19342 nosL; copper chaperone NosL
B
B 09194 Poorly characterized
C 99996 General function prediction only
D PERMA_0137 cvpA; CvpA family protein K03558 cvpA; membrane protein required for colicin V production
D PERMA_0942 BAX protein K03796 bax; Bax protein
D PERMA_0475 ATP-dependent rna helicase, dead/deah box family K06877 K06877; DEAD/DEAH box helicase domain-containing protein
D PERMA_0980 patatin K07001 K07001; NTE family protein
D PERMA_0768 putative membrane protein K07058 K07058; membrane protein
D PERMA_1834 phosphoribosyltransferase K07100 K07100; putative phosphoribosyl transferase
D PERMA_0016 phosphoribosyltransferase K07100 K07100; putative phosphoribosyl transferase
D PERMA_0094 histidinol-phosphate phosphatase K11777 K11777; HAD superfamily phosphatase
D PERMA_1690 conserved hypothetical protein K08993 yhhL; putative membrane protein
C 99997 Function unknown
D PERMA_0326 2-5A-dependent ribonuclease (2-5A-dependent RNase)(Ribonuclease L) (RNase L) (Ribonuclease 4) K06867 K06867; uncharacterized protein
D PERMA_1928 conserved hypothetical protein K06888 K06888; uncharacterized protein
D PERMA_0841 putative archaeal ATPase K06921 K06921; uncharacterized protein
D PERMA_0785 putative archaeal ATPase K06921 K06921; uncharacterized protein
D PERMA_0905 CoA-binding domain protein K06929 K06929; uncharacterized protein
D PERMA_0282 conserved domain protein K06934 K06934; uncharacterized protein
D PERMA_1736 small GTP-binding protein K06945 K06945; uncharacterized protein
D PERMA_1431 conserved domain protein K06960 K06960; uncharacterized protein
D PERMA_1028 peptidase C39 bacteriocin processing K06992 K06992; uncharacterized protein
D PERMA_1175 esterase K07000 K07000; uncharacterized protein
D PERMA_0312 V4R domain protein K07013 K07013; uncharacterized protein
D PERMA_1012 putative PIN domain protein K07064 K07064; uncharacterized protein
D PERMA_2006 PIN K07065 K07065; uncharacterized protein
D PERMA_1339 YcgL K07074 K07074; uncharacterized protein
D PERMA_0521 conserved domain protein K07090 K07090; uncharacterized protein
D PERMA_1631 membrane protein K07090 K07090; uncharacterized protein
D PERMA_0548 putative phosphoesterase, dhha1 K07097 K07097; uncharacterized protein
D PERMA_0654 conserved hypothetical protein K07112 K07112; uncharacterized protein
D PERMA_1733 roadblock/LC7 domain protein K07131 K07131; uncharacterized protein
D PERMA_1440 ATPase, AAA+ superfamily K07133 K07133; uncharacterized protein
D PERMA_1319 archaeal ATPase family protein K07133 K07133; uncharacterized protein
D PERMA_0046 ATPase K07133 K07133; uncharacterized protein
D PERMA_0384 radical SAM protein, family K07139 K07139; uncharacterized protein
D PERMA_1019 putative zinc ribbon domain family K07164 K07164; uncharacterized protein
D PERMA_0195 conserved hypothetical protein K08998 K08998; uncharacterized protein
D PERMA_0762 hypothetical protein K08999 K08999; uncharacterized protein
D PERMA_0369 conserved hypothetical protein K08999 K08999; uncharacterized protein
D PERMA_1895 conserved hypothetical protein K09004 K09004; uncharacterized protein
D PERMA_0791 conserved hypothetical protein K09009 K09009; uncharacterized protein
D PERMA_0136 GatB/Yqey domain protein K09117 K09117; uncharacterized protein
D PERMA_1342 conserved hypothetical protein K09124 K09124; uncharacterized protein
D PERMA_1406 protein CPn_0497//CPj0497/CpB0517 K09131 K09131; uncharacterized protein
D PERMA_0271 CBS domain containing protein K09137 K09137; uncharacterized protein
D PERMA_0114 conserved hypothetical protein K09141 K09141; uncharacterized protein
D PERMA_0394 YlxP K09764 K09764; uncharacterized protein
D PERMA_0691 hypothetical protein K09790 K09790; uncharacterized protein
D PERMA_1124 tetraacyldisaccharide 4'-kinase (Lipid A 4'-kinase) K09791 K09791; uncharacterized protein
D PERMA_0583 heavy-metal-associated domain protein K09792 K09792; uncharacterized protein
D PERMA_1707 conserved hypothetical protein K09804 K09804; uncharacterized protein
D PERMA_0317 conserved hypothetical protein K09943 K09943; uncharacterized protein
!
#
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 23, 2024