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Transcription Machinery - Puccinia striiformis f. sp. tritici (wheat yellow rust fungus)
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AEukaryotic type
B RNA polymerase II system
C RNA polymerase II
D Core subunits
E Pst134EA_013926 hypothetical protein K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
E Pst134EA_007428 hypothetical protein K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
E Pst134EA_001114 hypothetical protein K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
D Pol II specific subunits
E Pst134EA_000684 hypothetical protein K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
E Pst134EA_011083 hypothetical protein K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E Pst134EA_000613 hypothetical protein K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
D Pol I, II, III common subunits
E Pst134EA_028851 hypothetical protein K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E Pst134EA_000466 hypothetical protein K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
E Pst134EA_007580 hypothetical protein K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
E Pst134EA_006960 hypothetical protein K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E Pst134EA_013081 hypothetical protein K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E Pst134EA_031339 uncharacterized protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
E Pst134EA_032428 uncharacterized protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
E Pst134EA_005023 hypothetical protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
D Pol IV and V specific subunits
C Basal transcription factors
D TFIIA
E Pst134EA_024386 hypothetical protein K03123 TFIIA2; transcription initiation factor TFIIA small subunit
D TFIIB
E Pst134EA_007486 hypothetical protein K03124 TFIIB; transcription initiation factor TFIIB
D TFIID
E Pst134EA_030442 hypothetical protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E Pst134EA_007088 hypothetical protein K23358 TAF1; transcription initiation factor TFIID subunit 1, fungi type [EC:2.3.1.48]
E Pst134EA_000024 hypothetical protein K03128 TAF2; transcription initiation factor TFIID subunit 2
E Pst134EA_015863 hypothetical protein K03130 TAF5; transcription initiation factor TFIID subunit 5
E Pst134EA_004934 hypothetical protein K03131 TAF6; transcription initiation factor TFIID subunit 6
E Pst134EA_015438 hypothetical protein K03131 TAF6; transcription initiation factor TFIID subunit 6
E Pst134EA_013168 hypothetical protein K03132 TAF7; transcription initiation factor TFIID subunit 7
E Pst134EA_005184 hypothetical protein K03133 TAF9B; transcription initiation factor TFIID subunit 9B
E Pst134EA_011549 hypothetical protein K03134 TAF10; transcription initiation factor TFIID subunit 10
E Pst134EA_017540 hypothetical protein K03134 TAF10; transcription initiation factor TFIID subunit 10
E Pst134EA_009052 hypothetical protein K03135 TAF11; transcription initiation factor TFIID subunit 11
E Pst134EA_019346 hypothetical protein K03127 TAF13; transcription initiation factor TFIID subunit 13
D TFIIE
E Pst134EA_005500 hypothetical protein K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
D TFIIF
E Pst134EA_011064 hypothetical protein K03138 TFIIF1; transcription initiation factor TFIIF subunit alpha
E Pst134EA_024549 hypothetical protein K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-]
D TFIIH
E Pst134EA_022659 hypothetical protein K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E Pst134EA_011189 hypothetical protein K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E Pst134EA_011196 hypothetical protein K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E Pst134EA_017228 hypothetical protein K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E Pst134EA_017350 hypothetical protein K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E Pst134EA_003006 hypothetical protein K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E Pst134EA_003015 hypothetical protein K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E Pst134EA_015538 hypothetical protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E Pst134EA_015568 hypothetical protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E Pst134EA_015118 hypothetical protein K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E Pst134EA_013553 hypothetical protein K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E Pst134EA_003003 hypothetical protein K10842 MNAT1; CDK-activating kinase assembly factor MAT1
E Pst134EA_003012 hypothetical protein K10842 MNAT1; CDK-activating kinase assembly factor MAT1
E Pst134EA_013922 hypothetical protein K06634 CCNH; cyclin H
C Mediator complex
D Head
E Pst134EA_024079 hypothetical protein K15128 MED6; mediator of RNA polymerase II transcription subunit 6
D Middle
E Pst134EA_017550 hypothetical protein K15151 MED10; mediator of RNA polymerase II transcription subunit 10
E Pst134EA_017811 hypothetical protein K15151 MED10; mediator of RNA polymerase II transcription subunit 10
E Pst134EA_003396 hypothetical protein K15153 MED31; mediator of RNA polymerase II transcription subunit 31
E Pst134EA_011552 hypothetical protein K15153 MED31; mediator of RNA polymerase II transcription subunit 31
D Tail
D CDK-module
E Pst134EA_011746 hypothetical protein K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23]
E Pst134EA_011774 hypothetical protein K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23]
E Pst134EA_027966 hypothetical protein K15161 CCNC; cyclin-C
D Other mediators
C Coactivators
D SAGA/TFTC/STAGA complex
E Pst134EA_007362 hypothetical protein K06062 PCAF; histone acetyltransferase [EC:2.3.1.48]
E Pst134EA_018961 hypothetical protein K08874 TRRAP; transformation/transcription domain-associated protein
E Pst134EA_013132 hypothetical protein K11313 SUPT3H; transcription initiation protein SPT3
E Pst134EA_019100 hypothetical protein K11360 SPT8; transcriptional activator SPT8
E Pst134EA_000279 hypothetical protein K11314 TADA2A; transcriptional adapter 2-alpha
E Pst134EA_032818 uncharacterized protein K11314 TADA2A; transcriptional adapter 2-alpha
E Pst134EA_000024 hypothetical protein K03128 TAF2; transcription initiation factor TFIID subunit 2
E Pst134EA_015863 hypothetical protein K03130 TAF5; transcription initiation factor TFIID subunit 5
E Pst134EA_004934 hypothetical protein K03131 TAF6; transcription initiation factor TFIID subunit 6
E Pst134EA_015438 hypothetical protein K03131 TAF6; transcription initiation factor TFIID subunit 6
E Pst134EA_013168 hypothetical protein K03132 TAF7; transcription initiation factor TFIID subunit 7
E Pst134EA_005184 hypothetical protein K03133 TAF9B; transcription initiation factor TFIID subunit 9B
E Pst134EA_011549 hypothetical protein K03134 TAF10; transcription initiation factor TFIID subunit 10
E Pst134EA_017540 hypothetical protein K03134 TAF10; transcription initiation factor TFIID subunit 10
E Pst134EA_031488 uncharacterized protein K11364 SGF29; SAGA-associated factor 29
E Pst134EA_003184 hypothetical protein K11364 SGF29; SAGA-associated factor 29
E Pst134EA_023003 hypothetical protein K11367 CHD1; chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
E Pst134EA_023012 hypothetical protein K11367 CHD1; chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
E Pst134EA_005189 hypothetical protein K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12]
E Pst134EA_029396 hypothetical protein K12830 SF3B3; splicing factor 3B subunit 3
D BAF/PBAF complex
E Pst134EA_030632 hypothetical protein K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
E Pst134EA_002908 hypothetical protein K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
D SWI/SNF complex
E Pst134EA_013645 hypothetical protein K11786 STH1_SNF2; ATP-dependent helicase STH1/SNF2 [EC:5.6.2.-]
E Pst134EA_026618 hypothetical protein K11768 ARP9; actin-related protein 9
D RSC complex
E Pst134EA_030544 hypothetical protein K11756 RSC1_2; chromatin structure-remodeling complex subunit RSC1/2
E Pst134EA_026618 hypothetical protein K11768 ARP9; actin-related protein 9
E Pst134EA_013645 hypothetical protein K11786 STH1_SNF2; ATP-dependent helicase STH1/SNF2 [EC:5.6.2.-]
D Others
C Other transcription-related factors
D Transcription elongation factors
E Pst134EA_011953 hypothetical protein K03145 TFIIS; transcription elongation factor S-II
E Pst134EA_030269 hypothetical protein K15171 SUPT4H1; transcription elongation factor SPT4
E Pst134EA_004968 hypothetical protein K15171 SUPT4H1; transcription elongation factor SPT4
E Pst134EA_011655 hypothetical protein K15172 SUPT5H; transcription elongation factor SPT5
E Pst134EA_018930 hypothetical protein K11292 SUPT6H; transcription elongation factor SPT6
D Transcription termination factor
E Pst134EA_009864 hypothetical protein K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
E Pst134EA_011577 hypothetical protein K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
E Pst134EA_011703 hypothetical protein K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E Pst134EA_019384 hypothetical protein K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E Pst134EA_006747 hypothetical protein K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E Pst134EA_005562 hypothetical protein K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E Pst134EA_011285 hypothetical protein K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E Pst134EA_026725 hypothetical protein K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
E Pst134EA_028182 hypothetical protein K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
E Pst134EA_005319 hypothetical protein K14845 RAI1; RAT1-interacting protein
E Pst134EA_005553 hypothetical protein K14845 RAI1; RAT1-interacting protein
E Pst134EA_011598 hypothetical protein K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8]
E Pst134EA_011601 hypothetical protein K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8]
D PAF1 complex
E Pst134EA_025848 hypothetical protein K15174 PAF1; RNA polymerase II-associated factor 1
E Pst134EA_003223 hypothetical protein K15175 CDC73; parafibromin
E Pst134EA_027811 hypothetical protein K15176 CTR9; RNA polymerase-associated protein CTR9
E Pst134EA_005192 hypothetical protein K15178 RTF1; RNA polymerase-associated protein RTF1
D NELF complex
D Super elongation complex (SEC)
D Little elongation complex (LEC)
D Brd4/P-TEFb complex
D BUR kinase complex
D CTDK-I complex
E Pst134EA_007078 hypothetical protein K15564 CTK2; CTD kinase subunit beta
E Pst134EA_000351 hypothetical protein K15565 CTK3; CTD kinase subunit gamma
D 7SK RNP complex
D DBIRD complex
D Others
E Pst134EA_002538 hypothetical protein K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-]
E Pst134EA_019792 hypothetical protein K21751 DR1; down-regulator of transcription 1
E Pst134EA_009051 hypothetical protein K21752 DRAP1; Dr1-associated corepressor
E Pst134EA_030437 hypothetical protein K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16]
E Pst134EA_029293 hypothetical protein K17498 SPN1; transcription factor SPN1
E Pst134EA_017782 hypothetical protein K23002 RPAP3; RNA polymerase II-associated protein 3
E Pst134EA_004751 hypothetical protein K06666 TUP1; general transcriptional corepressor TUP1
E Pst134EA_000966 hypothetical protein K24104 GPN; GPN-loop GTPase
E Pst134EA_008964 hypothetical protein K24104 GPN; GPN-loop GTPase
E Pst134EA_013090 hypothetical protein K24104 GPN; GPN-loop GTPase
B RNA polymerase III system
C RNA polymerase III
D Core subunits
E Pst134EA_013423 hypothetical protein K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]
E Pst134EA_017949 hypothetical protein K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6]
E Pst134EA_017743 hypothetical protein K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1
E Pst134EA_013656 hypothetical protein K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2
E Pst134EA_013674 hypothetical protein K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2
D Pol III specific subunits
E Pst134EA_029002 hypothetical protein K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3
E Pst134EA_007453 hypothetical protein K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6
E Pst134EA_021079 hypothetical protein K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8
E Pst134EA_003326 hypothetical protein K25304 RPC9; DNA-directed RNA polymerase III subunit RPC9
E Pst134EA_015905 hypothetical protein K25304 RPC9; DNA-directed RNA polymerase III subunit RPC9
E Pst134EA_030633 hypothetical protein K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11
D Pol I, II, III common subunits
E Pst134EA_028851 hypothetical protein K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E Pst134EA_000466 hypothetical protein K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
E Pst134EA_007580 hypothetical protein K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
E Pst134EA_006960 hypothetical protein K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E Pst134EA_013081 hypothetical protein K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E Pst134EA_031339 uncharacterized protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
E Pst134EA_032428 uncharacterized protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
E Pst134EA_005023 hypothetical protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
C Basal transcription factors
D TFIIIA
E Pst134EA_011941 hypothetical protein K09191 GTF3A; general transcription factor IIIA
D TFIIIB
E Pst134EA_030442 hypothetical protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E Pst134EA_004595 hypothetical protein K15196 BRF1; transcription factor IIIB 90 kDa subunit
D TFIIIC
E Pst134EA_011188 hypothetical protein K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4)
E Pst134EA_011195 hypothetical protein K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4)
E Pst134EA_029429 hypothetical protein K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1)
D TFIIIC, fungi type
E Pst134EA_029429 hypothetical protein K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1)
E Pst134EA_011188 hypothetical protein K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4)
E Pst134EA_011195 hypothetical protein K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4)
C Other transcription-related factors
D snRNA-activating protein complex (SNAPc)
D Octamer transcription factors
D Others
B RNA polymerase I system
C RNA polymerase I
D Core subunits
E Pst134EA_015698 hypothetical protein K02999 RPA1; DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6]
E Pst134EA_015710 hypothetical protein K02999 RPA1; DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6]
E Pst134EA_024143 hypothetical protein K03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]
E Pst134EA_017743 hypothetical protein K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1
E Pst134EA_013656 hypothetical protein K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2
E Pst134EA_013674 hypothetical protein K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2
D Pol I specific subunits
E Pst134EA_015253 hypothetical protein K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49
E Pst134EA_028967 hypothetical protein K03000 RPA12; DNA-directed RNA polymerase I subunit RPA12
D Pol I, II, III common subunits
E Pst134EA_028851 hypothetical protein K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E Pst134EA_000466 hypothetical protein K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
E Pst134EA_007580 hypothetical protein K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
E Pst134EA_006960 hypothetical protein K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E Pst134EA_013081 hypothetical protein K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E Pst134EA_031339 uncharacterized protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
E Pst134EA_032428 uncharacterized protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
E Pst134EA_005023 hypothetical protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
C Basal transcription factors
D SL1/TIF-1B
E Pst134EA_030442 hypothetical protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
C Other transcription-related factors
D UBF
D Transcription initiation factors
E Pst134EA_009207 hypothetical protein K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3
E Pst134EA_031906 uncharacterized protein K15222 RRN11; RNA polymerase I-specific transcription initiation factor RRN11
E Pst134EA_013032 hypothetical protein K15222 RRN11; RNA polymerase I-specific transcription initiation factor RRN11
E Pst134EA_011474 hypothetical protein K15223 UAF30; upstream activation factor subunit UAF30
D Transcription elongation factors
E Pst134EA_030269 hypothetical protein K15171 SUPT4H1; transcription elongation factor SPT4
E Pst134EA_004968 hypothetical protein K15171 SUPT4H1; transcription elongation factor SPT4
E Pst134EA_011655 hypothetical protein K15172 SUPT5H; transcription elongation factor SPT5
D NoRC (nucleolar remodeling complex)
E Pst134EA_000426 hypothetical protein K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
E Pst134EA_008944 hypothetical protein K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
D CTDK-I complex
E Pst134EA_007078 hypothetical protein K15564 CTK2; CTD kinase subunit beta
E Pst134EA_000351 hypothetical protein K15565 CTK3; CTD kinase subunit gamma
D Transcription termination factors
D Others
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AProkaryotic type
B Bacterial type
C RNA polymerase
D Core subunits
D Sigma factors
C Other transcription-related factors
D RNA polymerase-associated proteins
D Transcription elongation factors
D Transcription termination factor
B Archaeal type
C RNA polymerase
D Core subunits
C Basal transcription factors
D TFB
E Pst134EA_007486 hypothetical protein K03124 TFIIB; transcription initiation factor TFIIB
D TFE
E Pst134EA_005500 hypothetical protein K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
D TFS
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 9, 2024