+D GENES KO
#
KEGG Orthology (KO) - Raineyella fluvialis
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:rain00010]
D Rai3103_06810 ROK family glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D Rai3103_08465 ROK family glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D Rai3103_08025 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Rai3103_09075 ATP-dependent 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D Rai3103_14990 pyrophosphate--fructose-6-phosphate 1-phosphotransferase K00895 pfp; diphosphate-dependent phosphofructokinase [EC:2.7.1.90]
D Rai3103_14525 glpX; class II fructose-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D Rai3103_03465 hypothetical protein K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D Rai3103_09185 fbaA; class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Rai3103_07415 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D Rai3103_06340 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Rai3103_11935 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Rai3103_11940 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D Rai3103_10185 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Rai3103_10720 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Rai3103_11830 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Rai3103_08330 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D Rai3103_05140 hypothetical protein K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D Rai3103_14430 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rai3103_06875 nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D Rai3103_02830 2-oxoacid:acceptor oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D Rai3103_02835 2-oxoacid:ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D Rai3103_06195 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D Rai3103_10745 alcohol dehydrogenase catalytic domain-containing protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D Rai3103_03375 zinc-binding alcohol dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D Rai3103_05875 alcohol dehydrogenase catalytic domain-containing protein K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D Rai3103_08405 alcohol dehydrogenase catalytic domain-containing protein K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D Rai3103_01460 aldehyde dehydrogenase family protein K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-]
D Rai3103_14345 AMP-binding protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Rai3103_05905 aldose epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D Rai3103_04315 aldose epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D Rai3103_11180 HAD-IA family hydrolase K20866 yihX; glucose-1-phosphatase [EC:3.1.3.10]
D Rai3103_13330 alpha-D-glucose phosphate-specific phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Rai3103_08085 ROK family protein K00886 ppgK; polyphosphate glucokinase [EC:2.7.1.63]
D Rai3103_04390 ROK family protein K00886 ppgK; polyphosphate glucokinase [EC:2.7.1.63]
D Rai3103_08020 D-hexose-6-phosphate mutarotase K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15]
D Rai3103_03695 phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
D Rai3103_01880 family 1 glycosylhydrolase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D Rai3103_06910 PTS glucose transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
C 00020 Citrate cycle (TCA cycle) [PATH:rain00020]
D Rai3103_03815 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D Rai3103_14430 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rai3103_02830 2-oxoacid:acceptor oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D Rai3103_02835 2-oxoacid:ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D Rai3103_01215 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D Rai3103_01220 sucC; ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D Rai3103_08295 succinate CoA transferase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]
D Rai3103_16205 sdhA; succinate dehydrogenase (quinone) flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D Rai3103_16200 succinate dehydrogenase/fumarate reductase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D Rai3103_16210 succinate dehydrogenase K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D Rai3103_05995 fumarate hydratase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D Rai3103_06375 aspartate ammonia-lyase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D Rai3103_01175 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D Rai3103_16120 mqo; malate dehydrogenase (quinone) K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D Rai3103_10360 pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1]
D Rai3103_03695 phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
D Rai3103_06875 nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
C 00030 Pentose phosphate pathway [PATH:rain00030]
D Rai3103_08025 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Rai3103_11970 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D Rai3103_12905 gndA; NADP-dependent phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D Rai3103_07270 gnd; decarboxylating 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D Rai3103_13765 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D Rai3103_05820 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Rai3103_05825 transketolase family protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Rai3103_06440 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Rai3103_06445 transketolase family protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Rai3103_11980 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Rai3103_04475 transketolase family protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Rai3103_04480 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Rai3103_11975 tal; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D Rai3103_05800 rpiA; ribose-5-phosphate isomerase RpiA K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D Rai3103_05840 ribose-5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D Rai3103_00155 ribose-5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D Rai3103_05080 ribose-5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D Rai3103_01390 RpiB/LacA/LacB family sugar-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D Rai3103_09785 ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D Rai3103_00390 ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D Rai3103_13330 alpha-D-glucose phosphate-specific phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Rai3103_10675 ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D Rai3103_01995 hypothetical protein K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D Rai3103_07260 AAA family ATPase K00851 idnK; gluconokinase [EC:2.7.1.12]
D Rai3103_08290 sugar kinase K25031 gntK; gluconokinase [EC:2.7.1.12]
D Rai3103_09265 sugar kinase K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
D Rai3103_05170 sugar kinase K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
D Rai3103_03465 hypothetical protein K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D Rai3103_09185 fbaA; class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Rai3103_14525 glpX; class II fructose-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D Rai3103_09075 ATP-dependent 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D Rai3103_14990 pyrophosphate--fructose-6-phosphate 1-phosphotransferase K00895 pfp; diphosphate-dependent phosphofructokinase [EC:2.7.1.90]
C 00040 Pentose and glucuronate interconversions [PATH:rain00040]
D Rai3103_12920 uxaC; glucuronate isomerase K01812 uxaC; glucuronate isomerase [EC:5.3.1.12]
D Rai3103_05155 uxaC; glucuronate isomerase K01812 uxaC; glucuronate isomerase [EC:5.3.1.12]
D Rai3103_12925 mannitol dehydrogenase family protein K00040 uxuB; fructuronate reductase [EC:1.1.1.57]
D Rai3103_06775 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D Rai3103_10385 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D Rai3103_04310 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D Rai3103_03460 hypothetical protein K00880 lyxK; L-xylulokinase [EC:2.7.1.53]
D Rai3103_07420 TIM barrel protein K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]
D Rai3103_12115 L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D Rai3103_05075 L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D Rai3103_13765 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D Rai3103_12135 araA; L-arabinose isomerase K01804 araA; L-arabinose isomerase [EC:5.3.1.4]
D Rai3103_09360 xylB; xylulokinase K00854 xylB; xylulokinase [EC:2.7.1.17]
D Rai3103_05805 xylulose kinase K00854 xylB; xylulokinase [EC:2.7.1.17]
D Rai3103_05925 xylB; xylulokinase K00854 xylB; xylulokinase [EC:2.7.1.17]
D Rai3103_03475 sugar kinase K00854 xylB; xylulokinase [EC:2.7.1.17]
D Rai3103_05930 xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D Rai3103_04420 rhaI; L-rhamnose isomerase K01820 rhaA; L-rhamnose isomerase / sugar isomerase [EC:5.3.1.14 5.3.1.-]
D Rai3103_04430 rhamnulose-1-phosphate aldolase K01629 rhaD; rhamnulose-1-phosphate aldolase [EC:4.1.2.19]
D Rai3103_00370 class II aldolase/adducin family protein K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
C 00051 Fructose and mannose metabolism [PATH:rain00051]
D Rai3103_11670 carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D Rai3103_04545 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D Rai3103_00975 manB; phosphomannomutase/phosphoglucomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D Rai3103_00995 NTP transferase domain-containing protein K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D Rai3103_00370 class II aldolase/adducin family protein K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
D Rai3103_04420 rhaI; L-rhamnose isomerase K01820 rhaA; L-rhamnose isomerase / sugar isomerase [EC:5.3.1.14 5.3.1.-]
D Rai3103_04430 rhamnulose-1-phosphate aldolase K01629 rhaD; rhamnulose-1-phosphate aldolase [EC:4.1.2.19]
D Rai3103_09075 ATP-dependent 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D Rai3103_14990 pyrophosphate--fructose-6-phosphate 1-phosphotransferase K00895 pfp; diphosphate-dependent phosphofructokinase [EC:2.7.1.90]
D Rai3103_14525 glpX; class II fructose-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D Rai3103_16285 phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D Rai3103_05930 xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D Rai3103_09370 mannitol dehydrogenase family protein K00045 E1.1.1.67; mannitol 2-dehydrogenase [EC:1.1.1.67]
D Rai3103_03465 hypothetical protein K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D Rai3103_09185 fbaA; class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Rai3103_07415 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D Rai3103_05840 ribose-5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D Rai3103_00155 ribose-5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D Rai3103_05080 ribose-5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D Rai3103_01390 RpiB/LacA/LacB family sugar-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D Rai3103_03985 PTS lactose transporter subunit IIC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D Rai3103_13940 HAD-IA family hydrolase K19270 hxpA; mannitol-1-/sugar-/sorbitol-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50]
D Rai3103_07300 HAD-IA family hydrolase K19270 hxpA; mannitol-1-/sugar-/sorbitol-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50]
D Rai3103_05690 PTS sorbitol transporter subunit IIA K02781 srlB; glucitol/sorbitol PTS system EIIA component [EC:2.7.1.198]
D Rai3103_05695 PTS sorbitol transporter subunit IIB K02782 srlE; glucitol/sorbitol PTS system EIIB component [EC:2.7.1.198]
D Rai3103_05700 srlA; PTS glucitol/sorbitol transporter subunit IIC K02783 srlA; glucitol/sorbitol PTS system EIIC component
C 00052 Galactose metabolism [PATH:rain00052]
D Rai3103_05905 aldose epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D Rai3103_04315 aldose epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D Rai3103_04305 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D Rai3103_05645 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Rai3103_10385 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D Rai3103_04310 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D Rai3103_13330 alpha-D-glucose phosphate-specific phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Rai3103_06810 ROK family glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D Rai3103_08465 ROK family glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D Rai3103_05240 glf; UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D Rai3103_13935 hypothetical protein K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D Rai3103_09075 ATP-dependent 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D Rai3103_00250 DUF3459 domain-containing protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
C 00053 Ascorbate and aldarate metabolism [PATH:rain00053]
D Rai3103_06775 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D Rai3103_07420 TIM barrel protein K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]
D Rai3103_12115 L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D Rai3103_05075 L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D Rai3103_03460 hypothetical protein K00880 lyxK; L-xylulokinase [EC:2.7.1.53]
C 00500 Starch and sucrose metabolism [PATH:rain00500]
D Rai3103_00250 DUF3459 domain-containing protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D Rai3103_03895 sucrose phosphorylase K00690 E2.4.1.7; sucrose phosphorylase [EC:2.4.1.7]
D Rai3103_10385 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D Rai3103_04310 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D Rai3103_09825 glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Rai3103_04415 glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Rai3103_01880 family 1 glycosylhydrolase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D Rai3103_11290 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D Rai3103_13340 glgB; 1,4-alpha-glucan branching protein GlgB K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D Rai3103_13360 glgP; alpha-glucan family phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D Rai3103_08510 glgP; glycogen/starch/alpha-glucan family phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D Rai3103_13350 treS; maltose alpha-D-glucosyltransferase K05343 treS; maltose alpha-D-glucosyltransferase / alpha-amylase [EC:5.4.99.16 3.2.1.1]
D Rai3103_03810 DUF3459 domain-containing protein K01208 cd; cyclomaltodextrinase / maltogenic alpha-amylase / neopullulanase [EC:3.2.1.54 3.2.1.133 3.2.1.135]
D Rai3103_00870 malQ; 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D Rai3103_13345 phosphotransferase K16146 pep2; maltokinase [EC:2.7.1.175]
D Rai3103_11285 glgA; glycogen synthase K16148 glgM; alpha-maltose-1-phosphate synthase [EC:2.4.1.342]
D Rai3103_06910 PTS glucose transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D Rai3103_10915 glgX; glycogen debranching protein GlgX K01214 ISA; isoamylase [EC:3.2.1.68]
D Rai3103_04250 glgX; glycogen debranching protein GlgX K01214 ISA; isoamylase [EC:3.2.1.68]
D Rai3103_02600 treY; malto-oligosyltrehalose synthase K06044 treY; (1->4)-alpha-D-glucan 1-alpha-D-glucosylmutase [EC:5.4.99.15]
D Rai3103_12675 trehalose-6-phosphate synthase K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347]
D Rai3103_12680 otsB; trehalose-phosphatase K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12]
D Rai3103_10140 glycoside hydrolase family 65 protein K05342 treP; alpha,alpha-trehalose phosphorylase [EC:2.4.1.64]
D Rai3103_13330 alpha-D-glucose phosphate-specific phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Rai3103_06810 ROK family glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D Rai3103_08465 ROK family glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D Rai3103_08025 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Rai3103_11670 carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:rain00520]
D Rai3103_10070 glycoside hydrolase family 3 protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D Rai3103_16670 chitosanase K01233 csn; chitosanase [EC:3.2.1.132]
D Rai3103_06910 PTS glucose transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D Rai3103_06925 PTS N-acetylglucosamine transporter subunit IIBC K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D Rai3103_06935 nagA; N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D Rai3103_06930 nagB; glucosamine-6-phosphate deaminase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6]
D Rai3103_11670 carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D Rai3103_02280 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D Rai3103_02295 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D Rai3103_08860 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D Rai3103_08865 UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D Rai3103_10670 glmU; UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D Rai3103_14425 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D Rai3103_02725 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D Rai3103_13930 gfo/Idh/MocA family oxidoreductase K13020 wlbA; UDP-N-acetyl-2-amino-2-deoxyglucuronate dehydrogenase [EC:1.1.1.335]
D Rai3103_07960 pseB; UDP-N-acetylglucosamine 4,6-dehydratase (inverting) K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-]
D Rai3103_06810 ROK family glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D Rai3103_08465 ROK family glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D Rai3103_08085 ROK family protein K00886 ppgK; polyphosphate glucokinase [EC:2.7.1.63]
D Rai3103_04390 ROK family protein K00886 ppgK; polyphosphate glucokinase [EC:2.7.1.63]
D Rai3103_13330 alpha-D-glucose phosphate-specific phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Rai3103_10385 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D Rai3103_04310 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D Rai3103_06775 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D Rai3103_09740 NAD-dependent epimerase/dehydratase family protein K06118 SQD1; UDP-sulfoquinovose synthase [EC:3.13.1.1]
D Rai3103_04305 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D Rai3103_05645 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Rai3103_05240 glf; UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D Rai3103_08025 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Rai3103_04545 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D Rai3103_00975 manB; phosphomannomutase/phosphoglucomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D Rai3103_00995 NTP transferase domain-containing protein K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D Rai3103_11290 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
C 00620 Pyruvate metabolism [PATH:rain00620]
D Rai3103_14345 AMP-binding protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Rai3103_06875 nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D Rai3103_02830 2-oxoacid:acceptor oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D Rai3103_02835 2-oxoacid:ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D Rai3103_14430 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rai3103_00285 acetaldehyde dehydrogenase (acetylating) K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10]
D Rai3103_10745 alcohol dehydrogenase catalytic domain-containing protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D Rai3103_03375 zinc-binding alcohol dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D Rai3103_05875 alcohol dehydrogenase catalytic domain-containing protein K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D Rai3103_08405 alcohol dehydrogenase catalytic domain-containing protein K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D Rai3103_11830 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Rai3103_01075 biotin/lipoyl-binding protein K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D Rai3103_14940 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D Rai3103_01460 aldehyde dehydrogenase family protein K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-]
D Rai3103_08295 succinate CoA transferase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]
D Rai3103_06195 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D Rai3103_12405 FAD-binding protein K18930 dld; D-lactate dehydrogenase
D Rai3103_07000 VOC family protein K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D Rai3103_13615 MBL fold metallo-hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D Rai3103_10360 pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1]
D Rai3103_01175 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D Rai3103_16120 mqo; malate dehydrogenase (quinone) K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D Rai3103_05995 fumarate hydratase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D Rai3103_06375 aspartate ammonia-lyase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D Rai3103_03695 phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
D Rai3103_02390 hypothetical protein K20370 PEPCK; phosphoenolpyruvate carboxykinase (diphosphate) [EC:4.1.1.38]
D Rai3103_08330 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D Rai3103_05140 hypothetical protein K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D Rai3103_13990 malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9]
D Rai3103_13865 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rai3103_14085 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rai3103_00795 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rai3103_01375 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rai3103_15740 citramalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D Rai3103_12480 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:rain00630]
D Rai3103_13995 aceA; isocitrate lyase K01637 E4.1.3.1; isocitrate lyase [EC:4.1.3.1]
D Rai3103_14345 AMP-binding protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Rai3103_13990 malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9]
D Rai3103_01175 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D Rai3103_03815 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D Rai3103_13865 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rai3103_14085 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rai3103_00795 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rai3103_01375 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rai3103_13300 mce; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D Rai3103_01075 biotin/lipoyl-binding protein K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D Rai3103_01045 methylmalonyl-CoA carboxyltransferase K27094 accD5; propionyl-/long chain acyl-CoA carboxylase carboxyl transferase subunit beta 5 [EC:6.4.1.3 6.4.1.- 2.1.3.15]
D Rai3103_07560 mutA; methylmalonyl-CoA mutase small subunit K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D Rai3103_07565 scpA; methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D Rai3103_01145 methylmalonyl-CoA mutase K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2]
D Rai3103_14500 HAD-IA family hydrolase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D Rai3103_09900 HAD hydrolase-like protein K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D Rai3103_13950 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rai3103_10585 glnT; type III glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rai3103_11390 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rai3103_11460 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rai3103_10225 glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Rai3103_05775 gcvP; aminomethyl-transferring glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D Rai3103_05770 gcvT; glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D Rai3103_14430 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rai3103_05765 gcvH; glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein
D Rai3103_15020 gcvH; glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein
D Rai3103_06485 gcl; glyoxylate carboligase K01608 gcl; tartronate-semialdehyde synthase [EC:4.1.1.47]
D Rai3103_06490 2-hydroxy-3-oxopropionate reductase K00042 garR; 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60]
D Rai3103_06475 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D Rai3103_11530 hypothetical protein K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D Rai3103_01995 hypothetical protein K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D Rai3103_14875 molybdopterin-dependent oxidoreductase K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D Rai3103_14870 4Fe-4S dicluster domain-containing protein K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D Rai3103_01170 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
C 00640 Propanoate metabolism [PATH:rain00640]
D Rai3103_14345 AMP-binding protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Rai3103_07715 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D Rai3103_07720 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D Rai3103_07725 2-oxo acid dehydrogenase subunit E2 K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D Rai3103_14430 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rai3103_01380 acyl-CoA oxidase K00232 E1.3.3.6; acyl-CoA oxidase [EC:1.3.3.6]
D Rai3103_03015 acryloyl-CoA reductase K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-]
D Rai3103_03290 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D Rai3103_01075 biotin/lipoyl-binding protein K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D Rai3103_10160 methylmalonyl-CoA carboxytransferase subunit 5S K03416 E2.1.3.1-5S; methylmalonyl-CoA carboxyltransferase 5S subunit [EC:2.1.3.1]
D Rai3103_10165 acyl-CoA carboxylase subunit beta K17489 E2.1.3.1-12S; methylmalonyl-CoA carboxyltransferase 12S subunit [EC:2.1.3.1]
D Rai3103_10170 hypothetical protein K17489 E2.1.3.1-12S; methylmalonyl-CoA carboxyltransferase 12S subunit [EC:2.1.3.1]
D Rai3103_12095 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D Rai3103_01045 methylmalonyl-CoA carboxyltransferase K27094 accD5; propionyl-/long chain acyl-CoA carboxylase carboxyl transferase subunit beta 5 [EC:6.4.1.3 6.4.1.- 2.1.3.15]
D Rai3103_13300 mce; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D Rai3103_07560 mutA; methylmalonyl-CoA mutase small subunit K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D Rai3103_07565 scpA; methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D Rai3103_01145 methylmalonyl-CoA mutase K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2]
D Rai3103_01220 sucC; ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D Rai3103_01215 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D Rai3103_04110 mmsA; CoA-acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D Rai3103_06195 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
C 00650 Butanoate metabolism [PATH:rain00650]
D Rai3103_13865 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rai3103_14085 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rai3103_00795 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rai3103_01375 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rai3103_07425 3-hydroxyacyl-CoA dehydrogenase family protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D Rai3103_03290 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D Rai3103_00285 acetaldehyde dehydrogenase (acetylating) K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10]
D Rai3103_16205 sdhA; succinate dehydrogenase (quinone) flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D Rai3103_16200 succinate dehydrogenase/fumarate reductase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D Rai3103_16210 succinate dehydrogenase K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D Rai3103_12095 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D Rai3103_12100 aldehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D Rai3103_04700 aldehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D Rai3103_08295 succinate CoA transferase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]
D Rai3103_06875 nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D Rai3103_02830 2-oxoacid:acceptor oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D Rai3103_02835 2-oxoacid:ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D Rai3103_00775 3-oxoacid CoA-transferase subunit A K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D Rai3103_00790 SDR family oxidoreductase K00019 BDH1; 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30]
D Rai3103_14590 alcohol dehydrogenase catalytic domain-containing protein K18369 adh2; alcohol dehydrogenase [EC:1.1.1.-]
D Rai3103_00180 thiamine pyrophosphate-binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Rai3103_15765 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Rai3103_15760 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:rain00660]
D Rai3103_00180 thiamine pyrophosphate-binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Rai3103_15765 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Rai3103_15760 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D Rai3103_01220 sucC; ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D Rai3103_01215 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D Rai3103_15650 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D Rai3103_15645 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D Rai3103_15750 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:rain00562]
D Rai3103_07005 hypothetical protein K21302 sapM; phosphatidylinositol-3-phosphatase [EC:3.1.3.64]
D Rai3103_01945 phosphoesterase K01114 plc; phospholipase C [EC:3.1.4.3]
D Rai3103_14045 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3]
D Rai3103_08120 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D Rai3103_12350 inositol-3-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4]
D Rai3103_07080 dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D Rai3103_04070 inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D Rai3103_04140 iolG; inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D Rai3103_04065 TIM barrel protein K03335 iolE; inosose dehydratase [EC:4.2.1.44]
D Rai3103_04115 iolD; 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) K03336 iolD; 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) [EC:3.7.1.22]
D Rai3103_04120 iolB; 5-deoxy-glucuronate isomerase K03337 iolB; 5-deoxy-glucuronate isomerase [EC:5.3.1.30]
D Rai3103_04130 iolC; 5-dehydro-2-deoxygluconokinase K03338 iolC; 5-dehydro-2-deoxygluconokinase [EC:2.7.1.92]
D Rai3103_04110 mmsA; CoA-acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D Rai3103_07415 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:rain00190]
D Rai3103_02935 NADH-quinone oxidoreductase subunit A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D Rai3103_02825 NADH-quinone oxidoreductase subunit B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D Rai3103_02930 NADH-quinone oxidoreductase subunit B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D Rai3103_02820 NADH-quinone oxidoreductase subunit C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2]
D Rai3103_02925 NADH-quinone oxidoreductase subunit C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2]
D Rai3103_09885 hypothetical protein K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2]
D Rai3103_02920 NADH-quinone oxidoreductase subunit D K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2]
D Rai3103_02915 nuoE; NADH-quinone oxidoreductase subunit NuoE K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D Rai3103_02910 nuoF; NADH-quinone oxidoreductase subunit NuoF K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D Rai3103_02905 NADH-quinone oxidoreductase subunit G K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D Rai3103_02815 4Fe-4S dicluster domain-containing protein K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D Rai3103_02895 nuoI; NADH-quinone oxidoreductase subunit NuoI K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D Rai3103_02890 NADH-quinone oxidoreductase subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D Rai3103_02885 nuoK; NADH-quinone oxidoreductase subunit NuoK K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D Rai3103_02880 nuoL; NADH-quinone oxidoreductase subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D Rai3103_02875 NADH-quinone oxidoreductase subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D Rai3103_02870 nuoN; NADH-quinone oxidoreductase subunit NuoN K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D Rai3103_09405 FAD-dependent oxidoreductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D Rai3103_16205 sdhA; succinate dehydrogenase (quinone) flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D Rai3103_16200 succinate dehydrogenase/fumarate reductase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D Rai3103_16210 succinate dehydrogenase K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D Rai3103_11565 Rieske 2Fe-2S domain-containing protein K03890 qcrA; quinol---cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D Rai3103_11570 c-type cytochrome K03889 qcrC; quinol---cytochrome-c reductase cytochrome c subunit [EC:7.1.1.8]
D Rai3103_11985 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D Rai3103_11550 cytochrome c oxidase subunit 4 K27109 ctaF; cytochrome c oxidase subunit IV [EC:7.1.1.9]
D Rai3103_11575 heme-copper oxidase subunit III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9]
D Rai3103_11545 ctaD; cytochrome c oxidase subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9]
D Rai3103_11540 coxB; cytochrome c oxidase subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]
D Rai3103_16630 heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9]
D Rai3103_08540 cytochrome oxidase assembly protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D Rai3103_07225 cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D Rai3103_07230 cydB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D Rai3103_13250 F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D Rai3103_13260 atpD; F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D Rai3103_13255 F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D Rai3103_13245 F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D Rai3103_13265 F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D Rai3103_13230 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D Rai3103_13240 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D Rai3103_13235 atpE; ATP synthase F0 subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D Rai3103_09810 inorganic diphosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D Rai3103_10425 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D Rai3103_11425 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms
C 00720 Carbon fixation pathways in prokaryotes
C 00680 Methane metabolism [PATH:rain00680]
D Rai3103_14875 molybdopterin-dependent oxidoreductase K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D Rai3103_14870 4Fe-4S dicluster domain-containing protein K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D Rai3103_10225 glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Rai3103_10720 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Rai3103_01175 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D Rai3103_03465 hypothetical protein K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D Rai3103_09185 fbaA; class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Rai3103_14525 glpX; class II fructose-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D Rai3103_09075 ATP-dependent 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D Rai3103_10590 glutamine amidotransferase K22081 mgsA; methylamine---glutamate N-methyltransferase subunit A [EC:2.1.1.21]
D Rai3103_10595 protein glxC K22082 mgsB; methylamine---glutamate N-methyltransferase subunit B [EC:2.1.1.21]
D Rai3103_06905 Rieske 2Fe-2S domain-containing protein K22083 mgsC; methylamine---glutamate N-methyltransferase subunit C [EC:2.1.1.21]
D Rai3103_14345 AMP-binding protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Rai3103_05140 hypothetical protein K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D Rai3103_10185 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Rai3103_13095 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Rai3103_10370 phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00910 Nitrogen metabolism [PATH:rain00910]
D Rai3103_02560 MFS transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D Rai3103_04965 MFS transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D Rai3103_02565 nitrate reductase subunit alpha K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D Rai3103_02570 narH; nitrate reductase subunit beta K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D Rai3103_02580 narI; respiratory nitrate reductase subunit gamma K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-]
D Rai3103_04955 NAD(P)/FAD-dependent oxidoreductase K00360 nasB; assimilatory nitrate reductase electron transfer subunit [EC:1.7.99.-]
D Rai3103_04970 nirD; nitrite reductase small subunit NirD K00363 nirD; nitrite reductase (NADH) small subunit [EC:1.7.1.15]
D Rai3103_00460 multicopper oxidase domain-containing protein K00368 nirK; nitrite reductase (NO-forming) [EC:1.7.2.1]
D Rai3103_05430 nitric-oxide reductase large subunit K04561 norB; nitric oxide reductase subunit B [EC:1.7.2.5]
D Rai3103_03380 nitronate monooxygenase K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16]
D Rai3103_14475 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D Rai3103_13950 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rai3103_10585 glnT; type III glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rai3103_11390 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rai3103_11460 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rai3103_13475 gltD; glutamate synthase small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D Rai3103_06520 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
D Rai3103_15370 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:rain00920]
D Rai3103_06625 sulfate ABC transporter substrate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D Rai3103_06620 cysT; sulfate ABC transporter permease subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D Rai3103_06615 sulfate ABC transporter permease subunit K02047 cysW; sulfate/thiosulfate transport system permease protein
D Rai3103_12415 sulfate ABC transporter permease subunit K02047 cysW; sulfate/thiosulfate transport system permease protein
D Rai3103_06610 cysA; sulfate ABC transporter ATP-binding protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D Rai3103_12410 cysA; sulfate ABC transporter ATP-binding protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D Rai3103_04630 aliphatic sulfonate ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D Rai3103_04620 ABC transporter permease subunit K15554 ssuC; sulfonate transport system permease protein
D Rai3103_04625 ATP-binding cassette domain-containing protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D Rai3103_15255 LLM class flavin-dependent oxidoreductase K04091 ssuD; alkanesulfonate monooxygenase [EC:1.14.14.5 1.14.14.34]
D Rai3103_04635 LLM class flavin-dependent oxidoreductase K04091 ssuD; alkanesulfonate monooxygenase [EC:1.14.14.5 1.14.14.34]
D Rai3103_06630 oxidoreductase K00299 ssuE; FMN reductase [EC:1.5.1.38]
D Rai3103_15250 ssuE; NADPH-dependent FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38]
D Rai3103_14460 sulfate adenylyltransferase K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D Rai3103_14455 cysD; sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D Rai3103_14450 phosphoadenylyl-sulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D Rai3103_14445 nitrite/sulfite reductase K00392 sir; sulfite reductase (ferredoxin) [EC:1.8.7.1]
D Rai3103_06395 NAD(P)/FAD-dependent oxidoreductase K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4]
D Rai3103_15340 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D Rai3103_10515 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D Rai3103_01275 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D Rai3103_14375 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D Rai3103_16145 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:rain00061]
D Rai3103_01075 biotin/lipoyl-binding protein K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D Rai3103_12755 acyl carrier protein K02078 acpP; acyl carrier protein
D Rai3103_12760 fabH; beta-ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D Rai3103_12750 beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Rai3103_07815 SDR family NAD(P)-dependent oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rai3103_01370 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rai3103_16525 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rai3103_05540 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rai3103_03900 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rai3103_00265 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:rain00071]
D Rai3103_13865 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rai3103_14085 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rai3103_00795 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rai3103_01375 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rai3103_03290 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D Rai3103_01380 acyl-CoA oxidase K00232 E1.3.3.6; acyl-CoA oxidase [EC:1.3.3.6]
D Rai3103_05540 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rai3103_03900 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rai3103_00265 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rai3103_14305 ferredoxin reductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3]
D Rai3103_09215 hypothetical protein K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3]
D Rai3103_10745 alcohol dehydrogenase catalytic domain-containing protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D Rai3103_03375 zinc-binding alcohol dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
C 00073 Cutin, suberine and wax biosynthesis
D Rai3103_13550 HAD-IB family hydrolase K13356 FAR; alcohol-forming fatty acyl-CoA reductase [EC:1.2.1.84]
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:rain00561]
D Rai3103_06475 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D Rai3103_11530 hypothetical protein K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D Rai3103_05875 alcohol dehydrogenase catalytic domain-containing protein K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D Rai3103_08405 alcohol dehydrogenase catalytic domain-containing protein K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D Rai3103_04575 dhaK; dihydroxyacetone kinase subunit DhaK K05878 dhaK; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaK [EC:2.7.1.121]
D Rai3103_04580 dhaL; dihydroxyacetone kinase subunit L K05879 dhaL; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaL [EC:2.7.1.121]
D Rai3103_04585 HPr family phosphocarrier protein K05881 dhaM; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaM [EC:2.7.1.121]
D Rai3103_00115 glpK; glycerol kinase GlpK K00864 glpK; glycerol kinase [EC:2.7.1.30]
D Rai3103_15885 HAD-IIA family hydrolase K06117 E3.1.3.21; glycerol-1-phosphatase [EC:3.1.3.21]
D Rai3103_05580 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Rai3103_13840 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Rai3103_11635 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Rai3103_11105 hypothetical protein K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D Rai3103_03765 diacylglycerol kinase K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D Rai3103_15795 diacylglycerol kinase family lipid kinase K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D Rai3103_02215 DUF1298 domain-containing protein K00635 tgs; diacylglycerol O-acyltransferase / wax synthase [EC:2.3.1.20 2.3.1.75]
D Rai3103_09740 NAD-dependent epimerase/dehydratase family protein K06118 SQD1; UDP-sulfoquinovose synthase [EC:3.13.1.1]
D Rai3103_13935 hypothetical protein K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
C 00564 Glycerophospholipid metabolism [PATH:rain00564]
D Rai3103_15635 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D Rai3103_05740 FAD-dependent oxidoreductase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D Rai3103_02990 FAD-dependent oxidoreductase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D Rai3103_05580 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Rai3103_13840 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Rai3103_11635 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Rai3103_11105 hypothetical protein K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D Rai3103_03765 diacylglycerol kinase K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D Rai3103_15795 diacylglycerol kinase family lipid kinase K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D Rai3103_01945 phosphoesterase K01114 plc; phospholipase C [EC:3.1.4.3]
D Rai3103_14045 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3]
D Rai3103_14415 glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D Rai3103_05285 hypothetical protein K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D Rai3103_15045 CDP-alcohol phosphatidyltransferase family protein K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D Rai3103_15595 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D Rai3103_11140 CDP-alcohol phosphatidyltransferase family protein K08744 CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41]
C 00565 Ether lipid metabolism [PATH:rain00565]
D Rai3103_05585 FAD-binding protein K00803 AGPS; alkyldihydroxyacetonephosphate synthase [EC:2.5.1.26]
D Rai3103_01945 phosphoesterase K01114 plc; phospholipase C [EC:3.1.4.3]
D Rai3103_14045 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3]
C 00600 Sphingolipid metabolism [PATH:rain00600]
D Rai3103_13935 hypothetical protein K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism [PATH:rain00592]
D Rai3103_01380 acyl-CoA oxidase K00232 E1.3.3.6; acyl-CoA oxidase [EC:1.3.3.6]
C 01040 Biosynthesis of unsaturated fatty acids [PATH:rain01040]
D Rai3103_01380 acyl-CoA oxidase K00232 E1.3.3.6; acyl-CoA oxidase [EC:1.3.3.6]
D Rai3103_15430 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:rain00230]
D Rai3103_13330 alpha-D-glucose phosphate-specific phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Rai3103_10675 ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D Rai3103_09385 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D Rai3103_09270 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D Rai3103_01195 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D Rai3103_09290 purS; phosphoribosylformylglycinamidine synthase subunit PurS K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3]
D Rai3103_09295 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D Rai3103_09390 phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D Rai3103_01025 5-(carboxyamino)imidazole ribonucleotide synthase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D Rai3103_09275 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D Rai3103_01190 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D Rai3103_13600 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D Rai3103_08115 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D Rai3103_16280 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D Rai3103_11795 hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D Rai3103_09840 hpt; hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D Rai3103_16715 nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D Rai3103_00825 rdgB; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D Rai3103_15060 type 1 glutamine amidotransferase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D Rai3103_14570 glutamine amidotransferase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D Rai3103_01270 guaA; glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D Rai3103_08015 dgt; dNTP triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1]
D Rai3103_13605 RelA/SpoT family protein K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D Rai3103_10735 exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D Rai3103_05030 GTP pyrophosphokinase family protein K07816 E2.7.6.5; GTP pyrophosphokinase [EC:2.7.6.5]
D Rai3103_09250 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D Rai3103_01130 hypothetical protein K01488 add; adenosine deaminase [EC:3.5.4.4]
D Rai3103_04805 ade; adenine deaminase K01486 ade; adenine deaminase [EC:3.5.4.2]
D Rai3103_02430 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D Rai3103_15050 HIT domain-containing protein K19710 E2.7.7.53; ATP adenylyltransferase [EC:2.7.7.53]
D Rai3103_14460 sulfate adenylyltransferase K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D Rai3103_14455 cysD; sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D Rai3103_06525 Asp/Glu/hydantoin racemase K16841 hpxA; allantoin racemase [EC:5.1.99.3]
D Rai3103_06505 allB; allantoinase AllB K01466 allB; allantoinase [EC:3.5.2.5]
D Rai3103_06500 aspartate carbamoyltransferase K24871 E2.1.3.16; ureidoglycine carbamoyltransferase [EC:2.1.3.16]
D Rai3103_06520 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
C 00240 Pyrimidine metabolism [PATH:rain00240]
D Rai3103_13705 carA; glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D Rai3103_06460 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D Rai3103_00240 amidohydrolase family protein K01465 URA4; dihydroorotase [EC:3.5.2.3]
D Rai3103_06870 dihydroorotate dehydrogenase-like protein K00226 pyrD; dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1]
D Rai3103_09155 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D Rai3103_13720 pyrF; orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D Rai3103_16470 UMP kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D Rai3103_16715 nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D Rai3103_01055 septum formation inhibitor Maf K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D Rai3103_13835 cmk; (d)CMP kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D Rai3103_08115 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D Rai3103_16280 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D Rai3103_00235 pyrR; bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D Rai3103_01135 cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D Rai3103_08350 dCTP deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D Rai3103_09700 tmk; dTMP kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D Rai3103_15310 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D Rai3103_15730 thymidine phosphorylase K00758 deoA; thymidine phosphorylase [EC:2.4.2.4]
D Rai3103_15345 thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21]
D Rai3103_00820 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D Rai3103_10615 allantoate amidohydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:rain00250]
D Rai3103_11410 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D Rai3103_06465 hypothetical protein K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D Rai3103_08280 ald; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D Rai3103_08595 ald; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D Rai3103_12455 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D Rai3103_15920 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D Rai3103_09250 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D Rai3103_09275 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D Rai3103_06460 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D Rai3103_12095 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D Rai3103_12100 aldehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D Rai3103_04700 aldehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D Rai3103_13475 gltD; glutamate synthase small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D Rai3103_14475 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D Rai3103_13950 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rai3103_10585 glnT; type III glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rai3103_11390 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rai3103_11460 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rai3103_13705 carA; glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D Rai3103_09295 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D Rai3103_02280 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D Rai3103_09385 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:rain00260]
D Rai3103_03315 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Rai3103_09970 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Rai3103_13185 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D Rai3103_13770 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D Rai3103_08625 threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48]
D Rai3103_10225 glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Rai3103_06475 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D Rai3103_11530 hypothetical protein K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D Rai3103_10185 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Rai3103_13095 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Rai3103_10370 phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D Rai3103_05775 gcvP; aminomethyl-transferring glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D Rai3103_05770 gcvT; glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D Rai3103_14430 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rai3103_05765 gcvH; glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein
D Rai3103_15020 gcvH; glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein
D Rai3103_12065 aldehyde dehydrogenase family protein K00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8]
D Rai3103_04540 solA; N-methyl-L-tryptophan oxidase K00301 E1.5.3.1; sarcosine oxidase [EC:1.5.3.1]
D Rai3103_10610 FAD-dependent oxidoreductase K00301 E1.5.3.1; sarcosine oxidase [EC:1.5.3.1]
D Rai3103_05760 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D Rai3103_13455 tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D Rai3103_13450 trpB; tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D Rai3103_03610 TrpB-like pyridoxal phosphate-dependent enzyme K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:rain00270]
D Rai3103_10515 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D Rai3103_01275 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D Rai3103_09480 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D Rai3103_11795 hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D Rai3103_05485 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D Rai3103_00945 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D Rai3103_03315 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Rai3103_09970 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Rai3103_14375 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D Rai3103_16145 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D Rai3103_04690 bifunctional O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D Rai3103_15745 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Rai3103_15340 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D Rai3103_06195 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D Rai3103_01175 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D Rai3103_05760 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D Rai3103_13095 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Rai3103_10370 phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:rain00280]
D Rai3103_15745 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Rai3103_07715 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D Rai3103_07720 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D Rai3103_07725 2-oxo acid dehydrogenase subunit E2 K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D Rai3103_14430 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rai3103_03290 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D Rai3103_01075 biotin/lipoyl-binding protein K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D Rai3103_01045 methylmalonyl-CoA carboxyltransferase K27094 accD5; propionyl-/long chain acyl-CoA carboxylase carboxyl transferase subunit beta 5 [EC:6.4.1.3 6.4.1.- 2.1.3.15]
D Rai3103_13300 mce; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D Rai3103_07560 mutA; methylmalonyl-CoA mutase small subunit K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D Rai3103_07565 scpA; methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D Rai3103_01145 methylmalonyl-CoA mutase K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2]
D Rai3103_04110 mmsA; CoA-acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D Rai3103_12095 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D Rai3103_00775 3-oxoacid CoA-transferase subunit A K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D Rai3103_13865 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rai3103_14085 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rai3103_00795 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rai3103_01375 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:rain00290]
D Rai3103_15650 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D Rai3103_15645 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D Rai3103_15750 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D Rai3103_00180 thiamine pyrophosphate-binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Rai3103_15765 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Rai3103_15760 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D Rai3103_15755 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D Rai3103_06900 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D Rai3103_14480 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D Rai3103_15745 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Rai3103_15740 citramalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D Rai3103_12480 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:rain00300]
D Rai3103_03315 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Rai3103_09970 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Rai3103_11300 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D Rai3103_16335 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D Rai3103_11255 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D Rai3103_15935 acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D Rai3103_13690 pyridoxal phosphate-dependent aminotransferase K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17]
D Rai3103_11265 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D Rai3103_15525 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D Rai3103_13175 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D Rai3103_06050 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-]
D Rai3103_11750 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D Rai3103_11755 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:rain00310]
D Rai3103_14430 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rai3103_03290 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D Rai3103_13865 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rai3103_14085 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rai3103_00795 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rai3103_01375 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rai3103_12095 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D Rai3103_12100 aldehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D Rai3103_04700 aldehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D Rai3103_14395 hypothetical protein K18014 kal; 3-aminobutyryl-CoA ammonia-lyase [EC:4.3.1.14]
C 00220 Arginine biosynthesis [PATH:rain00220]
D Rai3103_15930 argF; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D Rai3103_12455 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D Rai3103_15920 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D Rai3103_05040 atzF; allophanate hydrolase K01457 atzF; allophanate hydrolase [EC:3.5.1.54]
D Rai3103_09295 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D Rai3103_13950 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rai3103_10585 glnT; type III glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rai3103_11390 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rai3103_11460 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rai3103_13705 carA; glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D Rai3103_06520 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
D Rai3103_14475 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D Rai3103_15945 argJ; bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
D Rai3103_15940 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D Rai3103_15950 N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D Rai3103_15935 acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D Rai3103_16310 argE; acetylornithine deacetylase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16]
C 00330 Arginine and proline metabolism [PATH:rain00330]
D Rai3103_04265 hypothetical protein K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D Rai3103_15225 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D Rai3103_11035 rocD; ornithine--oxo-acid transaminase K00819 rocD; ornithine--oxo-acid transaminase [EC:2.6.1.13]
D Rai3103_09975 hypothetical protein K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D Rai3103_12010 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D Rai3103_12020 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00340 Histidine metabolism [PATH:rain00340]
D Rai3103_16035 ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D Rai3103_13425 hisI; phosphoribosyl-AMP cyclohydrolase K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19]
D Rai3103_13545 priA; bifunctional 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase/phosphoribosylanthranilate isomerase PriA K24017 priA; phosphoribosyl isomerase A [EC:5.3.1.16 5.3.1.24]
D Rai3103_13540 hisH; imidazole glycerol phosphate synthase subunit HisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D Rai3103_15785 hisF; imidazole glycerol phosphate synthase subunit HisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D Rai3103_13535 hisB; imidazoleglycerol-phosphate dehydratase HisB K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D Rai3103_09925 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Rai3103_13525 hisD; histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
C 00350 Tyrosine metabolism [PATH:rain00350]
D Rai3103_09925 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Rai3103_05485 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D Rai3103_04535 ornithine cyclodeaminase K25272 tynB; tyramine oxidase subunit B [EC:1.4.3.-]
D Rai3103_10745 alcohol dehydrogenase catalytic domain-containing protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D Rai3103_03375 zinc-binding alcohol dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D Rai3103_11930 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase K02510 hpaI; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52]
D Rai3103_12100 aldehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D Rai3103_04700 aldehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D Rai3103_11185 maleylpyruvate isomerase family mycothiol-dependent enzyme K16163 K16163; maleylpyruvate isomerase [EC:5.2.1.4]
D Rai3103_11870 maleylpyruvate isomerase family mycothiol-dependent enzyme K16163 K16163; maleylpyruvate isomerase [EC:5.2.1.4]
D Rai3103_09340 FAA hydrolase family protein K16164 K16164; acylpyruvate hydrolase [EC:3.7.1.5]
C 00360 Phenylalanine metabolism [PATH:rain00360]
D Rai3103_03290 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D Rai3103_07425 3-hydroxyacyl-CoA dehydrogenase family protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D Rai3103_09925 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Rai3103_05485 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D Rai3103_05495 katG; catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21]
D Rai3103_04265 hypothetical protein K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D Rai3103_15225 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D Rai3103_07630 Rieske 2Fe-2S domain-containing protein K05708 hcaE; 3-phenylpropionate/trans-cinnamate dioxygenase subunit alpha [EC:1.14.12.19]
D Rai3103_07610 Rieske 2Fe-2S domain-containing protein K05710 hcaC; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin component
D Rai3103_14305 ferredoxin reductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3]
D Rai3103_09215 hypothetical protein K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3]
D Rai3103_02130 bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase K05712 mhpA; 3-(3-hydroxy-phenyl)propionate hydroxylase [EC:1.14.13.127]
D Rai3103_08995 bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase K05712 mhpA; 3-(3-hydroxy-phenyl)propionate hydroxylase [EC:1.14.13.127]
D Rai3103_02135 3-carboxyethylcatechol 2,3-dioxygenase K05713 mhpB; 2,3-dihydroxyphenylpropionate 1,2-dioxygenase [EC:1.13.11.16]
D Rai3103_07640 3-carboxyethylcatechol 2,3-dioxygenase K05713 mhpB; 2,3-dihydroxyphenylpropionate 1,2-dioxygenase [EC:1.13.11.16]
D Rai3103_07600 alpha/beta fold hydrolase K05714 mhpC; 2-hydroxy-6-oxonona-2,4-dienedioate hydrolase [EC:3.7.1.14]
D Rai3103_12615 2-keto-4-pentenoate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
D Rai3103_00290 dmpG; 4-hydroxy-2-oxovalerate aldolase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39]
D Rai3103_00285 acetaldehyde dehydrogenase (acetylating) K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10]
C 00380 Tryptophan metabolism [PATH:rain00380]
D Rai3103_04020 amidohydrolase family protein K03392 ACMSD; aminocarboxymuconate-semialdehyde decarboxylase [EC:4.1.1.45]
D Rai3103_09200 amidohydrolase family protein K03392 ACMSD; aminocarboxymuconate-semialdehyde decarboxylase [EC:4.1.1.45]
D Rai3103_12630 2-hydroxymuconic semialdehyde dehydrogenase K10217 dmpC; aminomuconate-semialdehyde/2-hydroxymuconate-6-semialdehyde dehydrogenase [EC:1.2.1.32 1.2.1.85]
D Rai3103_14430 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rai3103_03290 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D Rai3103_13865 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rai3103_14085 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rai3103_00795 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rai3103_01375 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rai3103_04265 hypothetical protein K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D Rai3103_15225 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D Rai3103_01925 amidase K21801 iaaH; indoleacetamide hydrolase [EC:3.5.1.-]
D Rai3103_05495 katG; catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:rain00400]
D Rai3103_11640 3-deoxy-7-phosphoheptulonate synthase class II K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D Rai3103_13685 3-dehydroquinate synthase K13829 aroKB; shikimate kinase / 3-dehydroquinate synthase [EC:2.7.1.71 4.2.3.4]
D Rai3103_14005 type I 3-dehydroquinate dehydratase K03785 aroD; 3-dehydroquinate dehydratase I [EC:4.2.1.10]
D Rai3103_03920 aroQ; type II 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D Rai3103_03925 TIM barrel protein K26400 quiC1; 3-dehydroshikimate dehydratase [EC:4.2.1.118]
D Rai3103_00170 shikimate dehydrogenase K25901 qsuD; quinate/shikimate dehydrogenase (NAD+) [EC:1.1.1.24]
D Rai3103_13110 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D Rai3103_13430 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D Rai3103_11585 trpD; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D Rai3103_05125 hypothetical protein K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D Rai3103_13545 priA; bifunctional 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase/phosphoribosylanthranilate isomerase PriA K24017 priA; phosphoribosyl isomerase A [EC:5.3.1.16 5.3.1.24]
D Rai3103_13445 trpC; indole-3-glycerol phosphate synthase TrpC K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D Rai3103_13455 tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D Rai3103_13450 trpB; tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D Rai3103_03610 TrpB-like pyridoxal phosphate-dependent enzyme K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D Rai3103_01300 chorismate mutase K04092 tyrA1; chorismate mutase [EC:5.4.99.5]
D Rai3103_13830 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D Rai3103_03775 pheA; prephenate dehydratase K04518 pheA2; prephenate dehydratase [EC:4.2.1.51]
D Rai3103_09925 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Rai3103_05485 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:rain00410]
D Rai3103_11130 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D Rai3103_12095 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D Rai3103_11120 pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D Rai3103_10615 allantoate amidohydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D Rai3103_03290 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D Rai3103_01380 acyl-CoA oxidase K00232 E1.3.3.6; acyl-CoA oxidase [EC:1.3.3.6]
D Rai3103_04110 mmsA; CoA-acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
C 00430 Taurine and hypotaurine metabolism [PATH:rain00430]
D Rai3103_08280 ald; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D Rai3103_08595 ald; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D Rai3103_14475 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:rain00450]
D Rai3103_16145 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D Rai3103_14460 sulfate adenylyltransferase K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D Rai3103_14455 cysD; sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D Rai3103_14850 L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D Rai3103_01120 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:rain00460]
D Rai3103_09825 glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Rai3103_04415 glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Rai3103_06465 hypothetical protein K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D Rai3103_10225 glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:rain00470]
D Rai3103_02265 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D Rai3103_06055 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Rai3103_15630 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Rai3103_09295 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D Rai3103_00845 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D Rai3103_15525 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D Rai3103_13175 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:rain00480]
D Rai3103_01975 5-oxoprolinase K01469 OPLAH; 5-oxoprolinase (ATP-hydrolysing) [EC:3.5.2.9]
D Rai3103_01070 hypothetical protein K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9]
D Rai3103_07330 YbdK family carboxylate-amine ligase K06048 gshA; glutamate---cysteine ligase / carboxylate-amine ligase [EC:6.3.2.2 6.3.-.-]
D Rai3103_11510 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D Rai3103_09345 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D Rai3103_00215 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D Rai3103_12905 gndA; NADP-dependent phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D Rai3103_07270 gnd; decarboxylating 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D Rai3103_11970 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis [PATH:rain00515]
D Rai3103_10525 phospholipid carrier-dependent glycosyltransferase K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109]
C 00514 Other types of O-glycan biosynthesis [PATH:rain00514]
D Rai3103_10525 phospholipid carrier-dependent glycosyltransferase K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109]
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis [PATH:rain00540]
D Rai3103_14190 SIS domain-containing protein K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D Rai3103_14165 rfaE2; D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D Rai3103_14210 HAD-IIIA family hydrolase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
C 00542 O-Antigen repeat unit biosynthesis [PATH:rain00542]
D Rai3103_13215 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:rain00541]
D Rai3103_10385 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D Rai3103_04310 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D Rai3103_05645 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Rai3103_05240 glf; UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D Rai3103_06775 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D Rai3103_09655 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Rai3103_06740 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Rai3103_09635 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Rai3103_06750 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Rai3103_06745 sugar nucleotide-binding protein K23987 rfbCD; dTDP-4-dehydrorhamnose 3,5-epimerase/reductase [EC:5.1.3.13 1.1.1.133]
D Rai3103_09640 sugar nucleotide-binding protein K23987 rfbCD; dTDP-4-dehydrorhamnose 3,5-epimerase/reductase [EC:5.1.3.13 1.1.1.133]
D Rai3103_04545 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D Rai3103_00975 manB; phosphomannomutase/phosphoglucomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D Rai3103_00995 NTP transferase domain-containing protein K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D Rai3103_08865 UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D Rai3103_10670 glmU; UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D Rai3103_07960 pseB; UDP-N-acetylglucosamine 4,6-dehydratase (inverting) K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-]
D Rai3103_13930 gfo/Idh/MocA family oxidoreductase K13020 wlbA; UDP-N-acetyl-2-amino-2-deoxyglucuronate dehydrogenase [EC:1.1.1.335]
C 00550 Peptidoglycan biosynthesis [PATH:rain00550]
D Rai3103_14425 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D Rai3103_02725 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D Rai3103_11750 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D Rai3103_06055 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Rai3103_15630 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Rai3103_11755 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D Rai3103_11760 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D Rai3103_11775 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D Rai3103_11745 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D Rai3103_09815 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D Rai3103_00395 DUF1727 domain-containing protein K23393 murT; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13]
D Rai3103_00400 glutamine amidotransferase K07009 gatD; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13]
C 00552 Teichoic acid biosynthesis [PATH:rain00552]
D Rai3103_13215 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D Rai3103_07845 glycosyltransferase K09809 tagF; CDP-glycerol glycerophosphotransferase [EC:2.7.8.12]
D Rai3103_03720 LytR family transcriptional regulator K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-]
D Rai3103_01010 LytR family transcriptional regulator K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-]
D Rai3103_06020 LytR family transcriptional regulator K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:rain00543]
D Rai3103_06705 hypothetical protein K16710 wcaK; colanic acid/amylovoran biosynthesis protein WcaK/AmsJ
D Rai3103_13215 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D Rai3103_10515 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D Rai3103_01005 glycosyltransferase K16557 exoA; succinoglycan biosynthesis protein ExoA [EC:2.4.-.-]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:rain00730]
D Rai3103_15235 thiC; phosphomethylpyrimidine synthase ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D Rai3103_15610 thiD; bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D Rai3103_03430 aminotransferase class V-fold PLP-dependent enzyme K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Rai3103_14105 thiH; 2-iminoacetate synthase ThiH K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19]
D Rai3103_10950 thiO; glycine oxidase ThiO K03153 thiO; glycine oxidase [EC:1.4.3.19]
D Rai3103_15190 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D Rai3103_14110 thiazole synthase K03149 thiG; thiazole synthase [EC:2.8.1.10]
D Rai3103_10960 thiazole synthase K03149 thiG; thiazole synthase [EC:2.8.1.10]
D Rai3103_10945 thiamine phosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D Rai3103_15615 thiamine-phosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D Rai3103_13105 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D Rai3103_02430 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D Rai3103_15770 tenA; thiaminase II K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D Rai3103_08535 TenA family transcriptional regulator K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
C 00740 Riboflavin metabolism [PATH:rain00740]
D Rai3103_16445 ribB; 3,4-dihydroxy-2-butanone-4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D Rai3103_16435 ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D Rai3103_16450 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D Rai3103_16355 bifunctional riboflavin kinase/FAD synthetase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D Rai3103_06630 oxidoreductase K00299 ssuE; FMN reductase [EC:1.5.1.38]
D Rai3103_15250 ssuE; NADPH-dependent FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38]
C 00750 Vitamin B6 metabolism [PATH:rain00750]
D Rai3103_14420 pdxY; pyridoxal kinase PdxY K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D Rai3103_01610 oxidoreductase K05275 E1.1.1.65; pyridoxine 4-dehydrogenase [EC:1.1.1.65]
D Rai3103_10370 phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D Rai3103_13770 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D Rai3103_12240 pdxS; pyridoxal 5'-phosphate synthase lyase subunit PdxS K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6]
D Rai3103_12235 pdxT; pyridoxal 5'-phosphate synthase glutaminase subunit PdxT K08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6]
C 00760 Nicotinate and nicotinamide metabolism [PATH:rain00760]
D Rai3103_11410 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D Rai3103_11415 nadA; quinolinate synthase NadA K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D Rai3103_11405 carboxylating nicotinate-nucleotide diphosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D Rai3103_00865 nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D Rai3103_08115 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D Rai3103_16280 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D Rai3103_12995 hypothetical protein K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D Rai3103_13000 NUDIX domain-containing protein K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D Rai3103_15675 NAD(+) synthase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D Rai3103_04800 NAD-dependent protein deacylase K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D Rai3103_15870 NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D Rai3103_10805 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D Rai3103_12100 aldehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D Rai3103_04700 aldehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:rain00770]
D Rai3103_00180 thiamine pyrophosphate-binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Rai3103_15765 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Rai3103_15760 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D Rai3103_15755 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D Rai3103_06900 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D Rai3103_14480 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D Rai3103_11125 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D Rai3103_06330 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D Rai3103_14775 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D Rai3103_11120 pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D Rai3103_02285 type I pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33]
D Rai3103_13740 coaBC; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D Rai3103_16305 coaD; pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D Rai3103_11500 dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D Rai3103_02275 holo-ACP synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D Rai3103_15745 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Rai3103_10615 allantoate amidohydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D Rai3103_11130 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
C 00780 Biotin metabolism [PATH:rain00780]
D Rai3103_12750 beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Rai3103_07815 SDR family NAD(P)-dependent oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rai3103_01370 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rai3103_16525 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rai3103_02665 bioB; biotin synthase BioB K01012 bioB; biotin synthase [EC:2.8.1.6]
D Rai3103_01040 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:rain00785]
D Rai3103_11495 lipB; lipoyl(octanoyl) transferase LipB K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D Rai3103_11490 lipA; lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D Rai3103_14430 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rai3103_07715 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D Rai3103_07720 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D Rai3103_07725 2-oxo acid dehydrogenase subunit E2 K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D Rai3103_05775 gcvP; aminomethyl-transferring glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D Rai3103_05770 gcvT; glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D Rai3103_05765 gcvH; glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein
D Rai3103_15020 gcvH; glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:rain00790]
D Rai3103_09860 folB; dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D Rai3103_09865 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D Rai3103_09855 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D Rai3103_01160 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D Rai3103_00815 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D Rai3103_16725 dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D Rai3103_16445 ribB; 3,4-dihydroxy-2-butanone-4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D Rai3103_07350 aminodeoxychorismate/anthranilate synthase component II K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85]
D Rai3103_16135 aminodeoxychorismate lyase K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D Rai3103_05345 aminodeoxychorismate lyase K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D Rai3103_05385 pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D Rai3103_16535 moaA; GTP 3',8-cyclase MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D Rai3103_10445 moaC; cyclic pyranopterin monophosphate synthase MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D Rai3103_13035 molybdenum cofactor biosynthesis protein MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
C 00670 One carbon pool by folate [PATH:rain00670]
D Rai3103_00815 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D Rai3103_01185 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D Rai3103_10225 glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Rai3103_01195 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D Rai3103_01190 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D Rai3103_13755 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D Rai3103_05770 gcvT; glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D Rai3103_00820 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D Rai3103_01170 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D Rai3103_11665 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:rain00860]
D Rai3103_15720 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Rai3103_15825 tRNA glutamyl-Q(34) synthetase GluQRS K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Rai3103_10000 glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D Rai3103_10020 hemL; glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D Rai3103_10015 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D Rai3103_10005 hemC; hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D Rai3103_15175 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D Rai3103_09460 hypothetical protein K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3]
D Rai3103_07710 hemG; protoporphyrinogen oxidase K00231 PPOX; protoporphyrinogen/coproporphyrinogen III oxidase [EC:1.3.3.4 1.3.3.15]
D Rai3103_15330 ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D Rai3103_15170 hypothetical protein K00435 hemQ; hydrogen peroxide-dependent heme synthase [EC:1.3.98.5]
D Rai3103_10010 bifunctional uroporphyrinogen-III C-methyltransferase/uroporphyrinogen-III synthase K13542 cobA-hemD; uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75]
D Rai3103_14465 hypothetical protein K24866 sirC; precorrin-2 dehydrogenase [EC:1.3.1.76]
D Rai3103_12700 TIGR04053 family radical SAM/SPASM domain-containing protein K22227 ahbD; AdoMet-dependent heme synthase [EC:1.3.98.6]
D Rai3103_11985 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D Rai3103_16630 heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9]
D Rai3103_08540 cytochrome oxidase assembly protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D Rai3103_03665 cobalamin biosynthesis protein K03795 cbiX; sirohydrochlorin cobaltochelatase [EC:4.99.1.3]
D Rai3103_03650 cobI; precorrin-2 C(20)-methyltransferase K03394 cobI-cbiL; precorrin-2/cobalt-factor-2 C20-methyltransferase [EC:2.1.1.130 2.1.1.151]
D Rai3103_07660 cobJ; precorrin-3B C(17)-methyltransferase K13540 cobIJ; precorrin-2 C20-methyltransferase / precorrin-3B C17-methyltransferase [EC:2.1.1.130 2.1.1.131]
D Rai3103_07665 cobalamin biosynthesis protein CobG K02229 cobG; precorrin-3B synthase [EC:1.14.13.83]
D Rai3103_07675 hypothetical protein K02229 cobG; precorrin-3B synthase [EC:1.14.13.83]
D Rai3103_03660 cobJ; precorrin-3B C(17)-methyltransferase K13541 cbiGH-cobJ; cobalt-precorrin 5A hydrolase / cobalt-factor III methyltransferase / precorrin-3B C17-methyltransferase [EC:3.7.1.12 2.1.1.272 2.1.1.131]
D Rai3103_07550 cobM; precorrin-4 C(11)-methyltransferase K05936 cobM; precorrin-4/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271]
D Rai3103_07695 precorrin-6A synthase (deacetylating) K02228 cobF; precorrin-6A synthase [EC:2.1.1.152]
D Rai3103_07515 cobalt-precorrin-6A reductase K05895 cobK-cbiJ; precorrin-6A/cobalt-precorrin-6A reductase [EC:1.3.1.54 1.3.1.106]
D Rai3103_04750 cobalt-precorrin-6A reductase K05895 cobK-cbiJ; precorrin-6A/cobalt-precorrin-6A reductase [EC:1.3.1.54 1.3.1.106]
D Rai3103_03670 cobalt-precorrin-5B (C(1))-methyltransferase K02188 cbiD; cobalt-precorrin-5B (C1)-methyltransferase [EC:2.1.1.195]
D Rai3103_07545 cbiE; precorrin-6y C5,15-methyltransferase (decarboxylating) subunit CbiE K00595 cobL-cbiET; precorrin-6B C5,15-methyltransferase / cobalt-precorrin-6B C5,C15-methyltransferase [EC:2.1.1.132 2.1.1.289 2.1.1.196]
D Rai3103_03675 precorrin-8X methylmutase K06042 cobH-cbiC; precorrin-8X/cobalt-precorrin-8 methylmutase [EC:5.4.99.61 5.4.99.60]
D Rai3103_07670 precorrin-8X methylmutase K06042 cobH-cbiC; precorrin-8X/cobalt-precorrin-8 methylmutase [EC:5.4.99.61 5.4.99.60]
D Rai3103_07525 cobyrinate a,c-diamide synthase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11]
D Rai3103_13275 cob(I)yrinic acid a,c-diamide adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D Rai3103_07530 cobO; cob(I)yrinic acid a,c-diamide adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D Rai3103_07705 cobyric acid synthase K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10]
D Rai3103_03875 cobalamin biosynthesis protein K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
D Rai3103_03870 adenosylcobinamide-GDP ribazoletransferase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26]
D Rai3103_09880 bluB; 5,6-dimethylbenzimidazole synthase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21]
D Rai3103_03865 cobT; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21]
D Rai3103_07535 putative cobaltochelatase K03404 chlD; magnesium chelatase subunit D [EC:6.6.1.1]
D Rai3103_04205 magnesium chelatase K03405 chlI; magnesium chelatase subunit I [EC:6.6.1.1]
D Rai3103_00350 bfr; bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:rain00130]
D Rai3103_02955 demethylmenaquinone methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D Rai3103_02945 isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
D Rai3103_02965 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9]
D Rai3103_02970 o-succinylbenzoate synthase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113]
D Rai3103_02975 AMP-binding protein K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26]
D Rai3103_03555 1,4-dihydroxy-2-naphthoyl-CoA synthase K01661 menB; naphthoate synthase [EC:4.1.3.36]
D Rai3103_00425 hotdog fold thioesterase K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28]
D Rai3103_02980 1,4-dihydroxy-2-naphthoate polyprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D Rai3103_03590 NAD(P)H-binding protein K19267 qorB; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D Rai3103_14095 NAD(P)H-binding protein K19267 qorB; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D Rai3103_16110 hypothetical protein K09834 VTE1; tocopherol cyclase [EC:5.5.1.24]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:rain00900]
D Rai3103_15190 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D Rai3103_16425 1-deoxy-D-xylulose-5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D Rai3103_10215 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D Rai3103_10220 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D Rai3103_16415 ispG; flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D Rai3103_10985 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D Rai3103_13865 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rai3103_14085 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rai3103_00795 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rai3103_01375 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rai3103_11660 polyprenyl synthetase family protein K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D Rai3103_10930 isoprenyl transferase K12503 E2.5.1.68; short-chain Z-isoprenyl diphosphate synthase [EC:2.5.1.68]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis [PATH:rain00906]
D Rai3103_07465 phytoene/squalene synthase family protein K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32]
D Rai3103_07455 lycopene cyclase domain-containing protein K22502 crtY; lycopene beta-cyclase [EC:5.5.1.19]
D Rai3103_07445 FAD-dependent oxidoreductase K09879 crtU; carotenoid phi-ring synthase / carotenoid chi-ring synthase [EC:1.3.99.39 1.3.99.40]
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation [PATH:rain00907]
D Rai3103_03290 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D Rai3103_12165 SDR family oxidoreductase K13775 atuG; citronellol/citronellal dehydrogenase
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D Rai3103_05820 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Rai3103_05825 transketolase family protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Rai3103_06440 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Rai3103_06445 transketolase family protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Rai3103_11980 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Rai3103_04475 transketolase family protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Rai3103_04480 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:rain00523]
D Rai3103_09655 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Rai3103_06740 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Rai3103_09635 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Rai3103_06750 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Rai3103_06745 sugar nucleotide-binding protein K23987 rfbCD; dTDP-4-dehydrorhamnose 3,5-epimerase/reductase [EC:5.1.3.13 1.1.1.133]
D Rai3103_09640 sugar nucleotide-binding protein K23987 rfbCD; dTDP-4-dehydrorhamnose 3,5-epimerase/reductase [EC:5.1.3.13 1.1.1.133]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
D Rai3103_02945 isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
C 01055 Biosynthesis of vancomycin group antibiotics
D Rai3103_09635 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Rai3103_06750 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids [PATH:rain00946]
D Rai3103_09825 glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Rai3103_04415 glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Rai3103_04410 Bacterial alpha-L-rhamnosidase K05989 ramA; alpha-L-rhamnosidase [EC:3.2.1.40]
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis [PATH:rain00332]
D Rai3103_12010 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D Rai3103_12020 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:rain00261]
D Rai3103_14460 sulfate adenylyltransferase K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D Rai3103_14455 cysD; sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D Rai3103_03315 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Rai3103_09970 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Rai3103_11300 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D Rai3103_16335 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:rain00521]
D Rai3103_06810 ROK family glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D Rai3103_08465 ROK family glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D Rai3103_13330 alpha-D-glucose phosphate-specific phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Rai3103_12350 inositol-3-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4]
D Rai3103_08120 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D Rai3103_07080 dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D Rai3103_04070 inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D Rai3103_04140 iolG; inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D Rai3103_09655 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Rai3103_06740 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Rai3103_09635 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Rai3103_06750 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Rai3103_06745 sugar nucleotide-binding protein K23987 rfbCD; dTDP-4-dehydrorhamnose 3,5-epimerase/reductase [EC:5.1.3.13 1.1.1.133]
D Rai3103_09640 sugar nucleotide-binding protein K23987 rfbCD; dTDP-4-dehydrorhamnose 3,5-epimerase/reductase [EC:5.1.3.13 1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D Rai3103_06810 ROK family glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D Rai3103_08465 ROK family glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:rain00525]
D Rai3103_09655 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Rai3103_06740 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Rai3103_09635 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Rai3103_06750 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:rain00401]
D Rai3103_13830 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D Rai3103_09925 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Rai3103_05485 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D Rai3103_13430 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D Rai3103_07815 SDR family NAD(P)-dependent oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rai3103_01370 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rai3103_16525 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D Rai3103_12755 acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:rain00999]
D Rai3103_09480 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D Rai3103_09825 glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Rai3103_04415 glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:rain00362]
D Rai3103_09960 benB; benzoate 1,2-dioxygenase small subunit K05550 benB-xylY; benzoate/toluate 1,2-dioxygenase subunit beta [EC:1.14.12.10 1.14.12.-]
D Rai3103_09955 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase K05784 benC-xylZ; benzoate/toluate 1,2-dioxygenase reductase component [EC:1.18.1.-]
D Rai3103_01645 alpha/beta fold hydrolase K01055 pcaD; 3-oxoadipate enol-lactonase [EC:3.1.1.24]
D Rai3103_07195 phenol 2-monooxygenase K16243 dmpL; phenol/toluene 2-monooxygenase (NADH) P1/A1 [EC:1.14.13.244 1.14.13.243]
D Rai3103_07190 monooxygenase K16244 dmpM; phenol/toluene 2-monooxygenase (NADH) P2/A2 [EC:1.14.13.244 1.14.13.243]
D Rai3103_07185 YHS domain-containing protein K16242 dmpN; phenol/toluene 2-monooxygenase (NADH) P3/A3 [EC:1.14.13.244 1.14.13.243]
D Rai3103_07175 2Fe-2S iron-sulfur cluster binding domain-containing protein K16246 dmpP; phenol/toluene 2-monooxygenase (NADH) P5/A5 [EC:1.14.13.244 1.14.13.243]
D Rai3103_12600 catechol 2,3-dioxygenase K00446 dmpB; catechol 2,3-dioxygenase [EC:1.13.11.2]
D Rai3103_14530 catechol 2,3-dioxygenase K00446 dmpB; catechol 2,3-dioxygenase [EC:1.13.11.2]
D Rai3103_08985 alpha/beta fold hydrolase K10216 dmpD; 2-hydroxymuconate-semialdehyde hydrolase [EC:3.7.1.9]
D Rai3103_16615 alpha/beta fold hydrolase K10216 dmpD; 2-hydroxymuconate-semialdehyde hydrolase [EC:3.7.1.9]
D Rai3103_12615 2-keto-4-pentenoate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
D Rai3103_00290 dmpG; 4-hydroxy-2-oxovalerate aldolase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39]
D Rai3103_00285 acetaldehyde dehydrogenase (acetylating) K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10]
D Rai3103_12630 2-hydroxymuconic semialdehyde dehydrogenase K10217 dmpC; aminomuconate-semialdehyde/2-hydroxymuconate-6-semialdehyde dehydrogenase [EC:1.2.1.32 1.2.1.85]
D Rai3103_12625 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D Rai3103_12620 4-oxalocrotonate decarboxylase K01617 dmpH; 2-oxo-3-hexenedioate decarboxylase [EC:4.1.1.77]
D Rai3103_10470 carboxymuconolactone decarboxylase family protein K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
D Rai3103_09035 4-hydroxybenzoate 3-monooxygenase K00481 pobA; p-hydroxybenzoate 3-monooxygenase [EC:1.14.13.2]
D Rai3103_09195 4-hydroxybenzoate 3-monooxygenase K00481 pobA; p-hydroxybenzoate 3-monooxygenase [EC:1.14.13.2]
D Rai3103_03290 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D Rai3103_07425 3-hydroxyacyl-CoA dehydrogenase family protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D Rai3103_13865 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rai3103_14085 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rai3103_00795 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rai3103_01375 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00627 Aminobenzoate degradation [PATH:rain00627]
D Rai3103_04265 hypothetical protein K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D Rai3103_15225 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D Rai3103_14940 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D Rai3103_01905 2Fe-2S iron-sulfur cluster binding domain-containing protein K11311 antC; anthranilate 1,2-dioxygenase reductase component [EC:1.18.1.-]
D Rai3103_03290 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
C 00364 Fluorobenzoate degradation [PATH:rain00364]
D Rai3103_09960 benB; benzoate 1,2-dioxygenase small subunit K05550 benB-xylY; benzoate/toluate 1,2-dioxygenase subunit beta [EC:1.14.12.10 1.14.12.-]
D Rai3103_09955 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase K05784 benC-xylZ; benzoate/toluate 1,2-dioxygenase reductase component [EC:1.18.1.-]
D Rai3103_07100 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D Rai3103_14970 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00625 Chloroalkane and chloroalkene degradation [PATH:rain00625]
D Rai3103_10745 alcohol dehydrogenase catalytic domain-containing protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D Rai3103_03375 zinc-binding alcohol dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D Rai3103_00095 haloacid dehalogenase type II K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:rain00361]
D Rai3103_07195 phenol 2-monooxygenase K16243 dmpL; phenol/toluene 2-monooxygenase (NADH) P1/A1 [EC:1.14.13.244 1.14.13.243]
D Rai3103_07190 monooxygenase K16244 dmpM; phenol/toluene 2-monooxygenase (NADH) P2/A2 [EC:1.14.13.244 1.14.13.243]
D Rai3103_07185 YHS domain-containing protein K16242 dmpN; phenol/toluene 2-monooxygenase (NADH) P3/A3 [EC:1.14.13.244 1.14.13.243]
D Rai3103_07175 2Fe-2S iron-sulfur cluster binding domain-containing protein K16246 dmpP; phenol/toluene 2-monooxygenase (NADH) P5/A5 [EC:1.14.13.244 1.14.13.243]
D Rai3103_07100 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D Rai3103_14970 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D Rai3103_12600 catechol 2,3-dioxygenase K00446 dmpB; catechol 2,3-dioxygenase [EC:1.13.11.2]
D Rai3103_14530 catechol 2,3-dioxygenase K00446 dmpB; catechol 2,3-dioxygenase [EC:1.13.11.2]
D Rai3103_00095 haloacid dehalogenase type II K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
C 00623 Toluene degradation [PATH:rain00623]
D Rai3103_07195 phenol 2-monooxygenase K16243 dmpL; phenol/toluene 2-monooxygenase (NADH) P1/A1 [EC:1.14.13.244 1.14.13.243]
D Rai3103_07190 monooxygenase K16244 dmpM; phenol/toluene 2-monooxygenase (NADH) P2/A2 [EC:1.14.13.244 1.14.13.243]
D Rai3103_07185 YHS domain-containing protein K16242 dmpN; phenol/toluene 2-monooxygenase (NADH) P3/A3 [EC:1.14.13.244 1.14.13.243]
D Rai3103_07175 2Fe-2S iron-sulfur cluster binding domain-containing protein K16246 dmpP; phenol/toluene 2-monooxygenase (NADH) P5/A5 [EC:1.14.13.244 1.14.13.243]
D Rai3103_07100 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D Rai3103_14970 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00622 Xylene degradation [PATH:rain00622]
D Rai3103_09960 benB; benzoate 1,2-dioxygenase small subunit K05550 benB-xylY; benzoate/toluate 1,2-dioxygenase subunit beta [EC:1.14.12.10 1.14.12.-]
D Rai3103_09955 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase K05784 benC-xylZ; benzoate/toluate 1,2-dioxygenase reductase component [EC:1.18.1.-]
D Rai3103_12600 catechol 2,3-dioxygenase K00446 dmpB; catechol 2,3-dioxygenase [EC:1.13.11.2]
D Rai3103_14530 catechol 2,3-dioxygenase K00446 dmpB; catechol 2,3-dioxygenase [EC:1.13.11.2]
D Rai3103_08985 alpha/beta fold hydrolase K10216 dmpD; 2-hydroxymuconate-semialdehyde hydrolase [EC:3.7.1.9]
D Rai3103_16615 alpha/beta fold hydrolase K10216 dmpD; 2-hydroxymuconate-semialdehyde hydrolase [EC:3.7.1.9]
D Rai3103_12630 2-hydroxymuconic semialdehyde dehydrogenase K10217 dmpC; aminomuconate-semialdehyde/2-hydroxymuconate-6-semialdehyde dehydrogenase [EC:1.2.1.32 1.2.1.85]
D Rai3103_12625 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D Rai3103_12620 4-oxalocrotonate decarboxylase K01617 dmpH; 2-oxo-3-hexenedioate decarboxylase [EC:4.1.1.77]
D Rai3103_12615 2-keto-4-pentenoate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
D Rai3103_00290 dmpG; 4-hydroxy-2-oxovalerate aldolase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39]
D Rai3103_00285 acetaldehyde dehydrogenase (acetylating) K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10]
C 00633 Nitrotoluene degradation [PATH:rain00633]
D Rai3103_04930 alkene reductase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
D Rai3103_04840 hydrogenase 1 large subunit K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6]
D Rai3103_04845 hydrogenase small subunit K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation [PATH:rain00643]
D Rai3103_04265 hypothetical protein K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D Rai3103_15225 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D Rai3103_12600 catechol 2,3-dioxygenase K00446 dmpB; catechol 2,3-dioxygenase [EC:1.13.11.2]
D Rai3103_14530 catechol 2,3-dioxygenase K00446 dmpB; catechol 2,3-dioxygenase [EC:1.13.11.2]
D Rai3103_08985 alpha/beta fold hydrolase K10216 dmpD; 2-hydroxymuconate-semialdehyde hydrolase [EC:3.7.1.9]
D Rai3103_16615 alpha/beta fold hydrolase K10216 dmpD; 2-hydroxymuconate-semialdehyde hydrolase [EC:3.7.1.9]
C 00791 Atrazine degradation
D Rai3103_05040 atzF; allophanate hydrolase K01457 atzF; allophanate hydrolase [EC:3.5.1.54]
C 00930 Caprolactam degradation
D Rai3103_03290 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
C 00363 Bisphenol degradation
C 00621 Dioxin degradation [PATH:rain00621]
D Rai3103_12625 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D Rai3103_12620 4-oxalocrotonate decarboxylase K01617 dmpH; 2-oxo-3-hexenedioate decarboxylase [EC:4.1.1.77]
D Rai3103_12615 2-keto-4-pentenoate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
D Rai3103_00290 dmpG; 4-hydroxy-2-oxovalerate aldolase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39]
D Rai3103_00285 acetaldehyde dehydrogenase (acetylating) K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10]
C 00626 Naphthalene degradation [PATH:rain00626]
D Rai3103_10745 alcohol dehydrogenase catalytic domain-containing protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D Rai3103_03375 zinc-binding alcohol dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
D Rai3103_00195 FAD-dependent oxidoreductase K05898 kstD; 3-oxosteroid 1-dehydrogenase [EC:1.3.99.4]
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:rain03020]
D Rai3103_02660 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D Rai3103_02655 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D Rai3103_02350 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D Rai3103_13735 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
D Rai3103_10315 helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:rain03010]
D Rai3103_11850 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D Rai3103_16480 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D Rai3103_02505 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D Rai3103_02355 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D Rai3103_02450 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D Rai3103_05525 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D Rai3103_02645 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D Rai3103_02465 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D Rai3103_02300 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D Rai3103_02540 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D Rai3103_02360 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D Rai3103_02365 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D Rai3103_02470 type Z 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D Rai3103_16320 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D Rai3103_16230 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D Rai3103_02490 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D Rai3103_05515 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D Rai3103_02515 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D Rai3103_12330 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D Rai3103_02695 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D Rai3103_02520 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D Rai3103_02535 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D Rai3103_02530 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D Rai3103_02475 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D Rai3103_02460 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D Rai3103_02685 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D Rai3103_05510 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D Rai3103_02690 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D Rai3103_02700 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D Rai3103_02305 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D Rai3103_02485 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D Rai3103_02440 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D Rai3103_02500 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D Rai3103_02345 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D Rai3103_02455 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D Rai3103_16190 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D Rai3103_15990 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D Rai3103_11995 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D Rai3103_02510 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D Rai3103_02525 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D Rai3103_02480 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D Rai3103_10680 50S ribosomal protein L25/general stress protein Ctc K02897 RP-L25; large subunit ribosomal protein L25
D Rai3103_12000 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D Rai3103_16315 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D Rai3103_02495 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D Rai3103_02445 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D Rai3103_13195 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D Rai3103_16270 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D Rai3103_02740 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D Rai3103_07490 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D Rai3103_06105 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D Rai3103_15995 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D Rai3103_02370 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D Rai3103_01315 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Rai3103_04660 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Rai3103_15910 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Rai3103_01310 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Rai3103_15905 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Rai3103_04655 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Rai3103_01305 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Rai3103_15900 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Rai3103_04650 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:rain00970]
D Rai3103_10465 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Rai3103_12040 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Rai3103_12045 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Rai3103_05795 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Rai3103_13170 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Rai3103_03690 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Rai3103_10390 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Rai3103_00325 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Rai3103_12665 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D Rai3103_09420 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D Rai3103_15070 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D Rai3103_15090 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D Rai3103_10655 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D Rai3103_15710 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D Rai3103_15700 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Rai3103_03035 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Rai3103_15705 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Rai3103_15075 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Rai3103_15095 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Rai3103_08150 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Rai3103_16805 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Rai3103_00380 tRNA-His K14226 tRNA-His; tRNA His
D Rai3103_06160 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D Rai3103_00720 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Rai3103_16075 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Rai3103_11835 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Rai3103_07385 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Rai3103_10740 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Rai3103_03020 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Rai3103_00700 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Rai3103_12685 tRNA-Ile K14230 tRNA-Met; tRNA Met
D Rai3103_12140 tRNA-Met K14230 tRNA-Met; tRNA Met
D Rai3103_13065 tRNA-Met K14230 tRNA-Met; tRNA Met
D Rai3103_02745 tRNA-Met K14230 tRNA-Met; tRNA Met
D Rai3103_09415 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D Rai3103_13880 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Rai3103_03235 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Rai3103_16775 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Rai3103_03730 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Rai3103_03715 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Rai3103_03405 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Rai3103_03520 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Rai3103_09720 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Rai3103_02750 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Rai3103_02715 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D Rai3103_02755 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D Rai3103_12790 tRNA-Val K14237 tRNA-Val; tRNA Val
D Rai3103_15065 tRNA-Val K14237 tRNA-Val; tRNA Val
D Rai3103_15085 tRNA-Val K14237 tRNA-Val; tRNA Val
D Rai3103_15100 tRNA-Val K14237 tRNA-Val; tRNA Val
D Rai3103_14855 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D Rai3103_15720 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Rai3103_15825 tRNA glutamyl-Q(34) synthetase GluQRS K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Rai3103_13415 gatA; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D Rai3103_13420 gatB; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D Rai3103_13410 gatC; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D Rai3103_14585 glutamine--tRNA ligase/YqeY domain fusion protein K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D Rai3103_13660 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Rai3103_13635 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Rai3103_03755 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D Rai3103_14850 L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D Rai3103_10240 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Rai3103_01120 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Rai3103_13755 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D Rai3103_16750 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D Rai3103_12300 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Rai3103_03345 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D Rai3103_09305 lysX; bifunctional lysylphosphatidylglycerol synthetase/lysine--tRNA ligase LysX K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D Rai3103_08100 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Rai3103_13620 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Rai3103_15970 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D Rai3103_15965 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D Rai3103_15915 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Rai3103_01030 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:rain03060]
D Rai3103_02435 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D Rai3103_11955 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D Rai3103_13590 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D Rai3103_13595 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D Rai3103_13585 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D Rai3103_06090 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Rai3103_16240 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D Rai3103_03400 ffs; signal recognition particle sRNA small type K01983 ffs; SRP RNA
D Rai3103_16245 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D Rai3103_07025 arsA; arsenical pump-driving ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D Rai3103_15805 tatA; twin-arginine translocase TatA/TatE family subunit K03116 tatA; sec-independent protein translocase protein TatA
D Rai3103_11310 translocase K03117 tatB; sec-independent protein translocase protein TatB
D Rai3103_15800 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC
D Rai3103_16185 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D Rai3103_12390 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D Rai3103_11820 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:rain04122]
D Rai3103_03430 aminotransferase class V-fold PLP-dependent enzyme K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Rai3103_15340 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D Rai3103_13035 molybdenum cofactor biosynthesis protein MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D Rai3103_16535 moaA; GTP 3',8-cyclase MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D Rai3103_10115 MoaD/ThiS family protein K03636 moaD; sulfur-carrier protein
D Rai3103_10445 moaC; cyclic pyranopterin monophosphate synthase MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D Rai3103_10955 thiS; sulfur carrier protein ThiS K03154 thiS; sulfur carrier protein
C 03050 Proteasome [PATH:rain03050]
D Rai3103_13825 prcA; proteasome subunit alpha K03432 psmA; proteasome alpha subunit [EC:3.4.25.1]
D Rai3103_13820 prcB; proteasome subunit beta K03433 psmB; proteasome beta subunit [EC:3.4.25.1]
C 03018 RNA degradation [PATH:rain03018]
D Rai3103_10720 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Rai3103_16325 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D Rai3103_13980 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D Rai3103_13190 transcription termination factor Rho K03628 rho; transcription termination factor Rho
D Rai3103_15565 rny; ribonuclease Y K18682 rny; ribonucrease Y [EC:3.1.-.-]
D Rai3103_16350 RNase J family beta-CASP ribonuclease K12574 rnj; ribonuclease J [EC:3.1.-.-]
D Rai3103_08715 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D Rai3103_10290 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Rai3103_01345 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Rai3103_10425 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D Rai3103_11425 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D Rai3103_06225 CCA tRNA nucleotidyltransferase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:rain03030]
D Rai3103_11615 endonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Rai3103_00410 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Rai3103_13485 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Rai3103_03390 DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Rai3103_09705 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Rai3103_12320 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Rai3103_06115 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Rai3103_07150 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D Rai3103_12645 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D Rai3103_05520 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D Rai3103_00305 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D Rai3103_11145 DUF4440 domain-containing protein K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D Rai3103_16180 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D Rai3103_11845 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Rai3103_13385 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:rain03410]
D Rai3103_03200 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D Rai3103_10840 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D Rai3103_09905 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D Rai3103_15665 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D Rai3103_11090 Fpg/Nei family DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D Rai3103_16260 mutM; bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D Rai3103_00145 Fpg/Nei family DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
D Rai3103_10765 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D Rai3103_02800 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D Rai3103_14760 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D Rai3103_05570 deoxyribonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D Rai3103_11845 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Rai3103_13385 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:rain03420]
D Rai3103_10705 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D Rai3103_11890 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D Rai3103_04355 AAA family ATPase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Rai3103_12990 AAA family ATPase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Rai3103_01235 AAA family ATPase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Rai3103_11845 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Rai3103_13385 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Rai3103_10315 helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
C 03430 Mismatch repair [PATH:rain03430]
D Rai3103_04355 AAA family ATPase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Rai3103_12990 AAA family ATPase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Rai3103_01235 AAA family ATPase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Rai3103_10980 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D Rai3103_10975 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D Rai3103_05520 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D Rai3103_00305 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D Rai3103_13485 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Rai3103_06115 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Rai3103_03390 DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Rai3103_12320 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Rai3103_09705 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Rai3103_11615 endonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Rai3103_00410 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Rai3103_13385 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:rain03440]
D Rai3103_05520 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D Rai3103_00305 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D Rai3103_06125 recF; DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF
D Rai3103_12500 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D Rai3103_15575 recA; recombinase RecA K03553 recA; recombination protein RecA
D Rai3103_11845 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Rai3103_13575 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D Rai3103_13580 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D Rai3103_13570 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D Rai3103_16290 DEAD/DEAH box helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D Rai3103_13010 AAA family ATPase K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D Rai3103_13015 hypothetical protein K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D Rai3103_13005 recD; exodeoxyribonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D Rai3103_13485 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Rai3103_06115 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Rai3103_03390 DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Rai3103_12320 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Rai3103_09705 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Rai3103_11615 endonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Rai3103_00410 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Rai3103_13760 primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
D Rai3103_14715 ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D Rai3103_15480 ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1 [PATH:rain03250]
D Rai3103_11600 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus and Lyssavirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:rain02010]
D Rai3103_06625 sulfate ABC transporter substrate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D Rai3103_06620 cysT; sulfate ABC transporter permease subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D Rai3103_06615 sulfate ABC transporter permease subunit K02047 cysW; sulfate/thiosulfate transport system permease protein
D Rai3103_12415 sulfate ABC transporter permease subunit K02047 cysW; sulfate/thiosulfate transport system permease protein
D Rai3103_06610 cysA; sulfate ABC transporter ATP-binding protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D Rai3103_12410 cysA; sulfate ABC transporter ATP-binding protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D Rai3103_04630 aliphatic sulfonate ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D Rai3103_04620 ABC transporter permease subunit K15554 ssuC; sulfonate transport system permease protein
D Rai3103_04625 ATP-binding cassette domain-containing protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D Rai3103_08210 modA; molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D Rai3103_08215 modB; molybdate ABC transporter permease subunit K02018 modB; molybdate transport system permease protein
D Rai3103_08220 ATP-binding cassette domain-containing protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D Rai3103_03570 ABC transporter substrate-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein
D Rai3103_03575 ABC transporter permease subunit K05846 opuBD; osmoprotectant transport system permease protein
D Rai3103_03580 ABC transporter permease subunit K05846 opuBD; osmoprotectant transport system permease protein
D Rai3103_03585 ATP-binding cassette domain-containing protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D Rai3103_10250 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D Rai3103_13915 ATP-binding cassette domain-containing protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D Rai3103_01280 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D Rai3103_01295 extracellular solute-binding protein K10236 thuE; trehalose/maltose transport system substrate-binding protein
D Rai3103_01290 ABC transporter permease subunit K10237 thuF; trehalose/maltose transport system permease protein
D Rai3103_01285 ABC transporter permease subunit K10238 thuG; trehalose/maltose transport system permease protein
D Rai3103_05920 substrate-binding domain-containing protein K10546 chvE; putative multiple sugar transport system substrate-binding protein
D Rai3103_01420 substrate-binding domain-containing protein K10546 chvE; putative multiple sugar transport system substrate-binding protein
D Rai3103_05910 sugar ABC transporter permease K10547 gguB; putative multiple sugar transport system permease protein
D Rai3103_01410 sugar ABC transporter permease K10547 gguB; putative multiple sugar transport system permease protein
D Rai3103_05915 ATP-binding cassette domain-containing protein K10548 gguA; putative multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D Rai3103_01415 ATP-binding cassette domain-containing protein K10548 gguA; putative multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D Rai3103_09790 substrate-binding domain-containing protein K10439 rbsB; ribose transport system substrate-binding protein
D Rai3103_09800 ATP-binding cassette domain-containing protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D Rai3103_11370 ATP-binding cassette domain-containing protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D Rai3103_09780 rbsD; D-ribose pyranase K06726 rbsD; D-ribose pyranase [EC:5.4.99.62]
D Rai3103_14720 substrate-binding domain-containing protein K10543 xylF; D-xylose transport system substrate-binding protein
D Rai3103_14730 sugar ABC transporter permease K10544 xylH; D-xylose transport system permease protein
D Rai3103_14725 ATP-binding cassette domain-containing protein K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10]
D Rai3103_03440 substrate-binding domain-containing protein K10559 rhaS; rhamnose transport system substrate-binding protein
D Rai3103_03450 ABC transporter permease K10560 rhaP; rhamnose transport system permease protein
D Rai3103_03445 ABC transporter permease K10561 rhaQ; rhamnose transport system permease protein
D Rai3103_03455 ATP-binding cassette domain-containing protein K10562 rhaT; rhamnose transport system ATP-binding protein [EC:7.5.2.-]
D Rai3103_10095 pstS; phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D Rai3103_10090 pstC; phosphate ABC transporter permease subunit PstC K02037 pstC; phosphate transport system permease protein
D Rai3103_10085 pstA; phosphate ABC transporter permease PstA K02038 pstA; phosphate transport system permease protein
D Rai3103_10080 phosphate ABC transporter ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D Rai3103_10885 ABC transporter permease subunit K10036 glnH; glutamine transport system substrate-binding protein
D Rai3103_10890 ATP-binding cassette domain-containing protein K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1]
D Rai3103_15555 ABC transporter permease subunit K10006 gluC; glutamate transport system permease protein
D Rai3103_15560 ABC transporter permease subunit K10007 gluD; glutamate transport system permease protein
D Rai3103_15545 ATP-binding cassette domain-containing protein K10008 gluA; glutamate transport system ATP-binding protein [EC:7.4.2.1]
D Rai3103_03280 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rai3103_05420 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rai3103_03275 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D Rai3103_03270 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein
D Rai3103_03265 ATP-binding cassette domain-containing protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rai3103_05410 ATP-binding cassette domain-containing protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rai3103_03260 ATP-binding cassette domain-containing protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rai3103_05405 ATP-binding cassette domain-containing protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rai3103_15285 methionine ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D Rai3103_04170 ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D Rai3103_15295 ABC transporter permease subunit K02072 metI; D-methionine transport system permease protein
D Rai3103_04180 ABC transporter permease subunit K02072 metI; D-methionine transport system permease protein
D Rai3103_15290 ATP-binding cassette domain-containing protein K02071 metN; D-methionine transport system ATP-binding protein
D Rai3103_04175 ATP-binding cassette domain-containing protein K02071 metN; D-methionine transport system ATP-binding protein
D Rai3103_11200 ABC transporter permease subunit K15581 oppB; oligopeptide transport system permease protein
D Rai3103_11205 ABC transporter permease subunit K15582 oppC; oligopeptide transport system permease protein
D Rai3103_11210 ATP-binding cassette domain-containing protein K15583 oppD; oligopeptide transport system ATP-binding protein
D Rai3103_12555 hypothetical protein K09815 znuA; zinc transport system substrate-binding protein
D Rai3103_12535 iron chelate uptake ABC transporter family permease subunit K09816 znuB; zinc transport system permease protein
D Rai3103_12540 ATP-binding cassette domain-containing protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D Rai3103_07585 cobalt transporter K02009 cbiN; cobalt/nickel transport protein
D Rai3103_07590 energy-coupling factor ABC transporter permease K02007 cbiM; cobalt/nickel transport system permease protein
D Rai3103_07580 cbiQ; cobalt ECF transporter T component CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D Rai3103_07575 ATP-binding cassette domain-containing protein K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D Rai3103_13870 biotin transporter BioY K03523 bioY; biotin transport system substrate-specific component
D Rai3103_13855 energy-coupling factor transporter transmembrane protein EcfT K16783 bioN; biotin transport system permease protein
D Rai3103_13860 ATP-binding cassette domain-containing protein K16784 bioM; biotin transport system ATP-binding protein [EC:7.6.2.-]
D Rai3103_09585 ABC transporter permease K09690 wzm; homopolymeric O-antigen transport system permease protein
D Rai3103_09580 ATP-binding cassette domain-containing protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D Rai3103_12820 FtsX-like permease family protein K09811 ftsX; cell division transport system permease protein
D Rai3103_12815 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D Rai3103_07290 ATP-binding cassette domain-containing protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D Rai3103_07280 ATP-binding cassette domain-containing protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D Rai3103_07235 cydD; thiol reductant ABC exporter subunit CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
C 02060 Phosphotransferase system (PTS) [PATH:rain02060]
D Rai3103_03970 ptsP; phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D Rai3103_03990 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr
D Rai3103_05685 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr
D Rai3103_06910 PTS glucose transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D Rai3103_06925 PTS N-acetylglucosamine transporter subunit IIBC K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D Rai3103_08675 PTS beta-glucoside transporter subunit EIIBCA K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D Rai3103_01875 PTS beta-glucoside transporter subunit EIIBCA K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D Rai3103_05690 PTS sorbitol transporter subunit IIA K02781 srlB; glucitol/sorbitol PTS system EIIA component [EC:2.7.1.198]
D Rai3103_05695 PTS sorbitol transporter subunit IIB K02782 srlE; glucitol/sorbitol PTS system EIIB component [EC:2.7.1.198]
D Rai3103_05700 srlA; PTS glucitol/sorbitol transporter subunit IIC K02783 srlA; glucitol/sorbitol PTS system EIIC component
D Rai3103_03985 PTS lactose transporter subunit IIC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D Rai3103_16285 phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
C 03070 Bacterial secretion system [PATH:rain03070]
D Rai3103_13590 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D Rai3103_13595 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D Rai3103_11955 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D Rai3103_02435 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D Rai3103_13585 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D Rai3103_06090 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Rai3103_16245 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D Rai3103_16240 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D Rai3103_15805 tatA; twin-arginine translocase TatA/TatE family subunit K03116 tatA; sec-independent protein translocase protein TatA
D Rai3103_11310 translocase K03117 tatB; sec-independent protein translocase protein TatB
D Rai3103_15800 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:rain02020]
D Rai3103_10195 two-component sensor histidine kinase K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D Rai3103_10200 response regulator K07776 regX3; two-component system, OmpR family, response regulator RegX3
D Rai3103_10095 pstS; phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D Rai3103_16630 heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9]
D Rai3103_08540 cytochrome oxidase assembly protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D Rai3103_12640 trypsin-like serine protease K08372 pepD; putative serine protease PepD [EC:3.4.21.-]
D Rai3103_11305 PDZ domain-containing protein K08372 pepD; putative serine protease PepD [EC:3.4.21.-]
D Rai3103_12870 HAMP domain-containing protein K07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3]
D Rai3103_12865 response regulator K07670 mtrA; two-component system, OmpR family, response regulator MtrA
D Rai3103_06110 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D Rai3103_09120 CoA ester lyase K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34]
D Rai3103_02565 nitrate reductase subunit alpha K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D Rai3103_02570 narH; nitrate reductase subunit beta K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D Rai3103_02580 narI; respiratory nitrate reductase subunit gamma K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-]
D Rai3103_02575 narJ; nitrate reductase molybdenum cofactor assembly chaperone K00373 narJ; nitrate reductase molybdenum cofactor assembly chaperone NarJ/NarW
D Rai3103_12190 Flp family type IVb pilin K02651 flp; pilus assembly protein Flp/PilA
D Rai3103_12205 hypothetical protein K02279 cpaB; pilus assembly protein CpaB
D Rai3103_12210 AAA family ATPase K02282 cpaE; pilus assembly protein CpaE
D Rai3103_06245 secretion protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D Rai3103_03160 TadA family conjugal transfer-associated ATPase K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D Rai3103_12215 CpaF family protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D Rai3103_03155 hypothetical protein K12510 tadB; tight adherence protein B
D Rai3103_12220 type II secretion system protein F K12510 tadB; tight adherence protein B
D Rai3103_06255 hypothetical protein K12511 tadC; tight adherence protein C
D Rai3103_12225 type II secretion system F family protein K12511 tadC; tight adherence protein C
D Rai3103_12885 HD domain-containing protein K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D Rai3103_12890 P-II family nitrogen regulator K04751 glnB; nitrogen regulatory protein P-II 1
D Rai3103_13950 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rai3103_10585 glnT; type III glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rai3103_11390 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rai3103_11460 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rai3103_13865 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rai3103_14085 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rai3103_00795 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rai3103_01375 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rai3103_05360 dctA; C4-dicarboxylate transporter DctA K11103 dctA; aerobic C4-dicarboxylate transport protein
D Rai3103_04845 hydrogenase small subunit K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]
D Rai3103_04840 hydrogenase 1 large subunit K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6]
D Rai3103_03205 cyclic nucleotide-binding domain-containing protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Rai3103_07225 cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D Rai3103_07230 cydB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D Rai3103_11645 low molecular weight phosphatase family protein K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
D Rai3103_04760 low molecular weight phosphotyrosine protein phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:rain02024]
D Rai3103_13430 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D Rai3103_11640 3-deoxy-7-phosphoheptulonate synthase class II K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D Rai3103_03435 MarR family transcriptional regulator K11531 lsrR; lsr operon transcriptional repressor
D Rai3103_03280 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rai3103_05420 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rai3103_03275 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D Rai3103_03270 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein
D Rai3103_03265 ATP-binding cassette domain-containing protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rai3103_05410 ATP-binding cassette domain-containing protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rai3103_03260 ATP-binding cassette domain-containing protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rai3103_05405 ATP-binding cassette domain-containing protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rai3103_00040 hypothetical protein K20276 bapA; large repetitive protein
D Rai3103_05540 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rai3103_03900 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rai3103_00265 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rai3103_03205 cyclic nucleotide-binding domain-containing protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Rai3103_16435 ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D Rai3103_11200 ABC transporter permease subunit K15581 oppB; oligopeptide transport system permease protein
D Rai3103_11205 ABC transporter permease subunit K15582 oppC; oligopeptide transport system permease protein
D Rai3103_11210 ATP-binding cassette domain-containing protein K15583 oppD; oligopeptide transport system ATP-binding protein
D Rai3103_12015 hypothetical protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D Rai3103_13085 ABC transporter permease subunit K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D Rai3103_13090 dipeptide ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D Rai3103_06090 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Rai3103_11955 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D Rai3103_02435 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D Rai3103_13585 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D Rai3103_16245 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D Rai3103_16240 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D Rai3103_01945 phosphoesterase K01114 plc; phospholipase C [EC:3.1.4.3]
D Rai3103_14045 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis
D Rai3103_09790 substrate-binding domain-containing protein K10439 rbsB; ribose transport system substrate-binding protein
C 02040 Flagellar assembly
D Rai3103_15405 RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D Rai3103_10720 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism [PATH:rain04980]
D Rai3103_13275 cob(I)yrinic acid a,c-diamide adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D Rai3103_07570 meaB; methylmalonyl Co-A mutase-associated GTPase MeaB K07588 MMAA; GTPase [EC:3.6.5.-]
D Rai3103_07560 mutA; methylmalonyl-CoA mutase small subunit K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D Rai3103_07565 scpA; methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:rain01501]
D Rai3103_10070 glycoside hydrolase family 3 protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D Rai3103_11200 ABC transporter permease subunit K15581 oppB; oligopeptide transport system permease protein
D Rai3103_11205 ABC transporter permease subunit K15582 oppC; oligopeptide transport system permease protein
D Rai3103_11210 ATP-binding cassette domain-containing protein K15583 oppD; oligopeptide transport system ATP-binding protein
D Rai3103_11745 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:rain01502]
D Rai3103_06055 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Rai3103_15630 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Rai3103_02265 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D Rai3103_11755 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D Rai3103_11760 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D Rai3103_11775 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance
D Rai3103_11600 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:rain01000]
C 01001 Protein kinases [BR:rain01001]
D Rai3103_11655 PASTA domain-containing protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D Rai3103_09545 polysaccharide biosynthesis tyrosine autokinase K25588 K25588; tyrosine-protein kinase [EC:2.7.10.3]
D Rai3103_10195 two-component sensor histidine kinase K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D Rai3103_12870 HAMP domain-containing protein K07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3]
D Rai3103_08380 two-component sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D Rai3103_08760 HAMP domain-containing protein K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D Rai3103_00335 hypothetical protein K02476 K02476; two-component system, CitB family, sensor kinase [EC:2.7.13.3]
D Rai3103_13135 PAS domain-containing protein K00936 pdtaS; two-component system, sensor histidine kinase PdtaS [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:rain01009]
D Rai3103_00945 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D Rai3103_08335 SpoIIE family protein phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
C 01002 Peptidases and inhibitors [BR:rain01002]
D Rai3103_11820 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D Rai3103_11590 hypothetical protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D Rai3103_12230 prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D Rai3103_04830 hydrogenase maturation protease K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-]
D Rai3103_15060 type 1 glutamine amidotransferase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D Rai3103_14570 glutamine amidotransferase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D Rai3103_01270 guaA; glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D Rai3103_08850 SH3 domain-containing protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D Rai3103_09385 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D Rai3103_02280 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D Rai3103_14915 DJ-1/PfpI/YhbO family deglycase/protease K05520 yhbO; deglycase [EC:3.5.1.124]
D Rai3103_09145 class E sortase K07284 srtA; sortase A [EC:3.4.22.70]
D Rai3103_16680 CPBP family intramembrane metalloprotease K07052 K07052; CAAX protease family protein
D Rai3103_15715 CPBP family intramembrane metalloprotease K07052 K07052; CAAX protease family protein
D Rai3103_09345 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D Rai3103_00215 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D Rai3103_13060 peptidase M16 K07263 pqqL; zinc protease [EC:3.4.24.-]
D Rai3103_13055 hypothetical protein K07263 pqqL; zinc protease [EC:3.4.24.-]
D Rai3103_11510 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D Rai3103_10295 membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D Rai3103_03700 M20/M25/M40 family metallo-hydrolase K01295 cpg; glutamate carboxypeptidase [EC:3.4.17.11]
D Rai3103_11265 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D Rai3103_02425 map; type I methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D Rai3103_11375 map; type I methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D Rai3103_11340 M24 family metallopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D Rai3103_09845 hflB; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D Rai3103_00320 PrsW family intramembrane metalloprotease K24131 prsW; protease PrsW [EC:3.4.-.-]
D Rai3103_10700 PrsW family intramembrane metalloprotease K24131 prsW; protease PrsW [EC:3.4.-.-]
D Rai3103_12640 trypsin-like serine protease K08372 pepD; putative serine protease PepD [EC:3.4.21.-]
D Rai3103_11305 PDZ domain-containing protein K08372 pepD; putative serine protease PepD [EC:3.4.21.-]
D Rai3103_15420 prolyl oligopeptidase family serine peptidase K01354 ptrB; oligopeptidase B [EC:3.4.21.83]
D Rai3103_09815 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D Rai3103_16760 ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D Rai3103_16765 ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D Rai3103_13040 PDZ domain-containing protein K07177 K07177; Lon-like protease
D Rai3103_15505 lexA; transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D Rai3103_16185 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D Rai3103_12390 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D Rai3103_09100 peptidase K04773 sppA; protease IV [EC:3.4.21.-]
D Rai3103_13825 prcA; proteasome subunit alpha K03432 psmA; proteasome alpha subunit [EC:3.4.25.1]
D Rai3103_13820 prcB; proteasome subunit beta K03433 psmB; proteasome beta subunit [EC:3.4.25.1]
C 01003 Glycosyltransferases [BR:rain01003]
D Rai3103_14400 glycosyltransferase K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83]
D Rai3103_10525 phospholipid carrier-dependent glycosyltransferase K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109]
D Rai3103_09620 glycosyltransferase K08256 pimA; phosphatidyl-myo-inositol alpha-mannosyltransferase [EC:2.4.1.345]
D Rai3103_09650 DUF2029 domain-containing protein K13669 pimE; alpha-1,2-mannosyltransferase [EC:2.4.1.-]
D Rai3103_02260 glycosyltransferase K12583 mgtA; phosphatidylinositol alpha 1,6-mannosyltransferase [EC:2.4.1.-]
D Rai3103_11285 glgA; glycogen synthase K16148 glgM; alpha-maltose-1-phosphate synthase [EC:2.4.1.342]
D Rai3103_13215 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D Rai3103_09680 DUF2029 domain-containing protein K13671 K13671; alpha-1,2-mannosyltransferase [EC:2.4.1.-]
D Rai3103_06150 DUF2029 domain-containing protein K13671 K13671; alpha-1,2-mannosyltransferase [EC:2.4.1.-]
D Rai3103_15775 DUF2029 domain-containing protein K13671 K13671; alpha-1,2-mannosyltransferase [EC:2.4.1.-]
D Rai3103_02810 DUF2029 domain-containing protein K14337 mptA; alpha-1,6-mannosyltransferase [EC:2.4.1.-]
D Rai3103_07825 hypothetical protein K14337 mptA; alpha-1,6-mannosyltransferase [EC:2.4.1.-]
D Rai3103_07830 hypothetical protein K14337 mptA; alpha-1,6-mannosyltransferase [EC:2.4.1.-]
D Rai3103_03795 hypothetical protein K14339 mptB; alpha-1,6-mannosyltransferase [EC:2.4.1.-]
D Rai3103_07950 hypothetical protein K14340 K14340; mannosyltransferase [EC:2.4.1.-]
D Rai3103_01005 glycosyltransferase K16557 exoA; succinoglycan biosynthesis protein ExoA [EC:2.4.-.-]
D Rai3103_12675 trehalose-6-phosphate synthase K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:rain01005]
D Rai3103_14190 SIS domain-containing protein K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D Rai3103_14210 HAD-IIIA family hydrolase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D Rai3103_14165 rfaE2; D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D Rai3103_07755 glycosyltransferase K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-]
D Rai3103_07770 glycosyltransferase K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-]
D Rai3103_13215 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:rain01011]
D Rai3103_14425 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D Rai3103_02725 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D Rai3103_11750 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D Rai3103_06055 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Rai3103_15630 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Rai3103_02265 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D Rai3103_00845 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D Rai3103_11760 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D Rai3103_11775 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D Rai3103_06215 murJ; murein biosynthesis integral membrane protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase
D Rai3103_11745 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D Rai3103_09815 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D Rai3103_08850 SH3 domain-containing protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D Rai3103_09145 class E sortase K07284 srtA; sortase A [EC:3.4.22.70]
D Rai3103_13670 mltG; endolytic transglycosylase MltG K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
C 01004 Lipid biosynthesis proteins [BR:rain01004]
D Rai3103_12760 fabH; beta-ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D Rai3103_12750 beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Rai3103_07815 SDR family NAD(P)-dependent oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rai3103_01370 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rai3103_16525 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rai3103_15430 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D Rai3103_16520 fabI; enoyl-ACP reductase FabI K11611 inhA; meromycolic acid enoyl-[acyl-carrier-protein] reductase [EC:1.3.1.118]
D Rai3103_14345 AMP-binding protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Rai3103_00540 AMP-binding protein K12507 fadK; acyl-CoA synthetase [EC:6.2.1.-]
D Rai3103_05540 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rai3103_03900 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rai3103_00265 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rai3103_05580 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Rai3103_13840 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Rai3103_11635 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins
C 01006 Prenyltransferases [BR:rain01006]
D Rai3103_11660 polyprenyl synthetase family protein K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D Rai3103_10930 isoprenyl transferase K12503 E2.5.1.68; short-chain Z-isoprenyl diphosphate synthase [EC:2.5.1.68]
D Rai3103_07465 phytoene/squalene synthase family protein K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32]
D Rai3103_15530 miaA; tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D Rai3103_02980 1,4-dihydroxy-2-naphthoate polyprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D Rai3103_11985 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D Rai3103_01060 decaprenyl-phosphate phosphoribosyltransferase K14136 K14136; decaprenyl-phosphate phosphoribosyltransferase [EC:2.4.2.45]
C 01007 Amino acid related enzymes [BR:rain01007]
D Rai3103_15720 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Rai3103_15825 tRNA glutamyl-Q(34) synthetase GluQRS K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Rai3103_14585 glutamine--tRNA ligase/YqeY domain fusion protein K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D Rai3103_15915 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Rai3103_01030 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D Rai3103_10240 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Rai3103_08100 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Rai3103_01120 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Rai3103_03345 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D Rai3103_16750 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D Rai3103_12300 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Rai3103_09305 lysX; bifunctional lysylphosphatidylglycerol synthetase/lysine--tRNA ligase LysX K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D Rai3103_13635 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Rai3103_13620 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Rai3103_03755 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D Rai3103_13660 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Rai3103_15970 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D Rai3103_15965 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D Rai3103_05485 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D Rai3103_13690 pyridoxal phosphate-dependent aminotransferase K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17]
D Rai3103_09925 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Rai3103_11035 rocD; ornithine--oxo-acid transaminase K00819 rocD; ornithine--oxo-acid transaminase [EC:2.6.1.13]
D Rai3103_15935 acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D Rai3103_12095 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D Rai3103_10020 hemL; glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D Rai3103_15745 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Rai3103_10370 phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:rain00194]
D Rai3103_13265 F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D Rai3103_13260 atpD; F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D Rai3103_13255 F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D Rai3103_13250 F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D Rai3103_13245 F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D Rai3103_13240 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D Rai3103_13235 atpE; ATP synthase F0 subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D Rai3103_13230 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D Rai3103_13225 hypothetical protein K02116 atpI; ATP synthase protein I
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:rain03000]
D Rai3103_08660 methylated-DNA--[protein]-cysteine S-methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D Rai3103_08835 LysR family transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D Rai3103_08585 ArgP/LysG family DNA-binding transcriptional regulator K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D Rai3103_05830 DeoR family transcriptional regulator K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
D Rai3103_13895 DeoR family transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D Rai3103_03975 DeoR family transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D Rai3103_09805 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Rai3103_04395 substrate-binding domain-containing protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Rai3103_04400 substrate-binding domain-containing protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Rai3103_06920 UTRA domain-containing protein K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D Rai3103_09175 UTRA domain-containing protein K03710 K03710; GntR family transcriptional regulator
D Rai3103_12505 FCD domain-containing protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D Rai3103_12245 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D Rai3103_02670 TetR family transcriptional regulator K18476 tetR; TetR/AcrR family transcriptional regulator, tetracycline repressor protein
D Rai3103_06335 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D Rai3103_08730 MerR family transcriptional regulator K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
D Rai3103_07480 MerR family transcriptional regulator K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
D Rai3103_12530 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D Rai3103_06425 helix-turn-helix domain-containing protein K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D Rai3103_06510 helix-turn-helix domain-containing protein K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D Rai3103_12610 helix-turn-helix domain-containing protein K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D Rai3103_03205 cyclic nucleotide-binding domain-containing protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Rai3103_00445 cyclic nucleotide-binding domain-containing protein K21562 flp; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D Rai3103_06990 metalloregulator ArsR/SmtB family transcription factor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D Rai3103_07045 metalloregulator ArsR/SmtB family transcription factor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D Rai3103_07040 metalloregulator ArsR/SmtB family transcription factor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D Rai3103_14000 helix-turn-helix domain-containing protein K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator
D Rai3103_15585 helix-turn-helix domain-containing protein K27043 clgR; XRE family transcriptional regulator, stress-response regulator
D Rai3103_05440 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D Rai3103_03055 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D Rai3103_14825 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D Rai3103_10410 dihydrofolate reductase K26252 dtxR; DtxR family transcriptional regulator, iron-dependent repressor
D Rai3103_01040 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D Rai3103_00490 ImmA/IrrE family metallo-endopeptidase K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D Rai3103_09995 redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor
D Rai3103_01885 PRD domain-containing protein K03488 licT; beta-glucoside operon transcriptional antiterminator
D Rai3103_04280 PRD domain-containing protein K03488 licT; beta-glucoside operon transcriptional antiterminator
D Rai3103_05710 PRD domain-containing protein K03491 licR; probable licABCH operon transcriptional regulator
D Rai3103_13140 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D Rai3103_03220 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D Rai3103_00990 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D Rai3103_07155 metal-sensing transcriptional repressor K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D Rai3103_06070 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Rai3103_10210 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D Rai3103_15925 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D Rai3103_12375 hrcA; heat-inducible transcriptional repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D Rai3103_15770 tenA; thiaminase II K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D Rai3103_08535 TenA family transcriptional regulator K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D Rai3103_09135 PspC domain-containing protein K03973 pspC; phage shock protein C
D Rai3103_05745 MarR family transcriptional regulator K05346 deoR; deoxyribonucleoside regulator
D Rai3103_05860 MarR family transcriptional regulator K05346 deoR; deoxyribonucleoside regulator
D Rai3103_03435 MarR family transcriptional regulator K11531 lsrR; lsr operon transcriptional repressor
D Rai3103_00235 pyrR; bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D Rai3103_10305 FMN-binding negative transcriptional regulator K07734 paiB; transcriptional regulator
D Rai3103_12860 YqgE/AlgH family protein K07735 algH; putative transcriptional regulator
D Rai3103_11815 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor
D Rai3103_15495 nrdR; transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR
D Rai3103_11730 mraZ; division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:rain03021]
D Rai3103_10315 helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
D Rai3103_02350 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D Rai3103_02660 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D Rai3103_02655 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D Rai3103_13735 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Rai3103_15405 RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor
D Rai3103_12650 hypothetical protein K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
D Rai3103_06210 sigM; RNA polymerase sigma factor SigM K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D Rai3103_14240 sigma-70 family RNA polymerase sigma factor K03090 sigB; RNA polymerase sigma-B factor
D Rai3103_16380 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
D Rai3103_13700 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D Rai3103_02705 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG
D Rai3103_04675 alpha/beta fold hydrolase K19707 rsbQ; sigma-B regulation protein RsbQ
D Rai3103_11815 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor
D Rai3103_10860 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D Rai3103_13190 transcription termination factor Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:rain03019]
D Rai3103_16350 RNase J family beta-CASP ribonuclease K12574 rnj; ribonuclease J [EC:3.1.-.-]
D Rai3103_15565 rny; ribonuclease Y K18682 rny; ribonucrease Y [EC:3.1.-.-]
D Rai3103_00375 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Rai3103_13980 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D Rai3103_10720 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Rai3103_16325 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D Rai3103_13190 transcription termination factor Rho K03628 rho; transcription termination factor Rho
D Rai3103_08715 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D Rai3103_10290 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Rai3103_01345 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Rai3103_10425 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D Rai3103_11425 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D Rai3103_06225 CCA tRNA nucleotidyltransferase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D Rai3103_02625 rraA; ribonuclease E activity regulator RraA K02553 rraA; regulator of ribonuclease activity A
D Rai3103_15790 DEAD/DEAH box helicase K03727 helY; ATP-dependent RNA helicase HelY [EC:5.6.2.6]
D Rai3103_15440 hrpA; ATP-dependent RNA helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
C 03041 Spliceosome
C 03011 Ribosome [BR:rain03011]
D Rai3103_11850 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D Rai3103_16480 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D Rai3103_02505 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D Rai3103_02355 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D Rai3103_02450 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D Rai3103_05525 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D Rai3103_02645 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D Rai3103_02465 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D Rai3103_02300 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D Rai3103_02540 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D Rai3103_02360 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D Rai3103_02365 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D Rai3103_02470 type Z 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D Rai3103_16320 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D Rai3103_16230 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D Rai3103_02490 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D Rai3103_05515 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D Rai3103_02515 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D Rai3103_12330 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D Rai3103_02695 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D Rai3103_02520 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D Rai3103_02535 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D Rai3103_02530 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D Rai3103_02475 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D Rai3103_02460 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D Rai3103_05510 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D Rai3103_02690 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D Rai3103_02700 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D Rai3103_02685 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D Rai3103_02305 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D Rai3103_02485 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D Rai3103_02440 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D Rai3103_02500 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D Rai3103_02345 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D Rai3103_02455 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D Rai3103_16190 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D Rai3103_15990 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D Rai3103_11995 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D Rai3103_02510 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D Rai3103_02525 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D Rai3103_02480 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D Rai3103_12000 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D Rai3103_16315 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D Rai3103_02495 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D Rai3103_02445 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D Rai3103_13195 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D Rai3103_16270 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D Rai3103_02740 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D Rai3103_07490 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D Rai3103_06105 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D Rai3103_15995 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D Rai3103_02370 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D Rai3103_10680 50S ribosomal protein L25/general stress protein Ctc K02897 RP-L25; large subunit ribosomal protein L25
D Rai3103_01305 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Rai3103_15900 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Rai3103_04650 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Rai3103_01315 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Rai3103_04660 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Rai3103_15910 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Rai3103_01310 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Rai3103_15905 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Rai3103_04655 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:rain03009]
D Rai3103_00375 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Rai3103_12450 GTPase Era K03595 era; GTPase
D Rai3103_12005 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
D Rai3103_11815 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor
D Rai3103_16380 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
D Rai3103_13700 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D Rai3103_02705 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG
D Rai3103_10625 rsmA; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D Rai3103_13750 rRNA cytosine-C5-methylase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D Rai3103_02330 methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D Rai3103_08320 methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D Rai3103_16300 rsmD; 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D Rai3103_12385 16S rRNA (uracil(1498)-N(3))-methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D Rai3103_06080 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D Rai3103_11735 rsmH; 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D Rai3103_10530 rsmI; 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D Rai3103_15880 TlyA family RNA methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D Rai3103_16550 hypothetical protein K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D Rai3103_10235 rlmB; 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D Rai3103_16455 rlmN; 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D Rai3103_03845 pseudouridylate synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D Rai3103_15840 pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D Rai3103_02240 GNAT family N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D Rai3103_08635 GNAT family N-acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
D Rai3103_10455 GNAT family N-acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
D Rai3103_16220 rimM; ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM
D Rai3103_13665 ruvX; Holliday junction resolvase RuvX K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D Rai3103_13980 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D Rai3103_13105 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D Rai3103_13845 ribosome biogenesis GTPase Der K03977 engA; GTPase
D Rai3103_13210 threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D Rai3103_13605 RelA/SpoT family protein K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D Rai3103_16365 rbfA; 30S ribosome-binding factor RbfA K02834 rbfA; ribosome-binding factor A
D Rai3103_16385 rimP; ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP
D Rai3103_08395 RNA-binding S4 domain-containing protein K14761 rlbA; ribosome-associated protein
D Rai3103_12030 rsfS; ribosome silencing factor K09710 ybeB; ribosome-associated protein
D Rai3103_12440 ybeY; rRNA maturation RNase YbeY K07042 ybeY; probable rRNA maturation factor
D Rai3103_11020 ychF; redox-regulated ATPase YchF K06942 ychF; ribosome-binding ATPase
C 03016 Transfer RNA biogenesis [BR:rain03016]
D Rai3103_15720 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Rai3103_15825 tRNA glutamyl-Q(34) synthetase GluQRS K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Rai3103_03345 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D Rai3103_12300 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Rai3103_01120 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Rai3103_14585 glutamine--tRNA ligase/YqeY domain fusion protein K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D Rai3103_08100 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Rai3103_09305 lysX; bifunctional lysylphosphatidylglycerol synthetase/lysine--tRNA ligase LysX K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D Rai3103_13635 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Rai3103_13660 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Rai3103_03755 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D Rai3103_10240 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Rai3103_16750 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D Rai3103_13620 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Rai3103_15970 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D Rai3103_15965 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D Rai3103_15915 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Rai3103_01030 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D Rai3103_10120 D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D Rai3103_02320 trmB; tRNA (guanosine(46)-N7)-methyltransferase TrmB K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D Rai3103_02325 truA; tRNA pseudouridine(38-40) synthase TruA K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D Rai3103_16360 truB; tRNA pseudouridine(55) synthase TruB K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D Rai3103_03430 aminotransferase class V-fold PLP-dependent enzyme K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Rai3103_13210 threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D Rai3103_15530 miaA; tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D Rai3103_06100 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D Rai3103_11360 rnpB; RNase P RNA component class A K01978 rnpB; M1 RNA
D Rai3103_00830 ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D Rai3103_15185 ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D Rai3103_14330 thpR; RNA 2',3'-cyclic phosphodiesterase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D Rai3103_07595 Rieske 2Fe-2S domain-containing protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D Rai3103_13495 ybaK; Cys-tRNA(Pro) deacylase K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D Rai3103_15540 miaB; tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D Rai3103_16215 trmD; tRNA (guanosine(37)-N1)-methyltransferase TrmD K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D Rai3103_03850 tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase TrmL K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D Rai3103_15985 RNA methyltransferase K03437 spoU; RNA methyltransferase, TrmH family
D Rai3103_03845 pseudouridylate synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D Rai3103_09835 tilS; tRNA lysidine(34) synthetase TilS K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D Rai3103_02245 tsaB; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D Rai3103_02235 tsaD; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D Rai3103_02250 tsaE; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D Rai3103_16325 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:rain03012]
D Rai3103_16475 elongation factor Ts K02357 tsf; elongation factor Ts
D Rai3103_02640 fusA; elongation factor G K02355 fusA; elongation factor G
D Rai3103_14845 selB; selenocysteine-specific translation elongation factor K03833 selB; selenocysteine-specific elongation factor
D Rai3103_16465 ribosome recycling factor K02838 frr; ribosome recycling factor
D Rai3103_13205 prmC; peptide chain release factor N(5)-glutamine methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D Rai3103_10505 HemK family protein methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D Rai3103_10685 aminoacyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D Rai3103_02375 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D Rai3103_13695 efp; elongation factor P K02356 efp; elongation factor P
D Rai3103_12810 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
D Rai3103_14640 aminoacyl-tRNA hydrolase K15034 yaeJ; ribosome-associated protein
C 03110 Chaperones and folding catalysts [BR:rain03110]
D Rai3103_09110 clpB; ATP-dependent chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D Rai3103_09895 AAA domain-containing protein K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC
D Rai3103_16755 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D Rai3103_08715 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D Rai3103_10290 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Rai3103_01345 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Rai3103_12380 dnaJ; molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ
D Rai3103_08720 grpE; nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE
D Rai3103_16015 Hsp20 family protein K13993 HSP20; HSP20 family protein
D Rai3103_09685 Hsp20 family protein K13993 HSP20; HSP20 family protein
D Rai3103_09675 RNA-binding S4 domain-containing protein K04762 hslR; ribosome-associated heat shock protein Hsp15
D Rai3103_00705 co-chaperone GroES K04078 groES; chaperonin GroES
D Rai3103_01350 co-chaperone GroES K04078 groES; chaperonin GroES
D Rai3103_09845 hflB; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D Rai3103_13230 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D Rai3103_04825 hydrogenase maturation nickel metallochaperone HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF
D Rai3103_04850 hypB; hydrogenase nickel incorporation protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB
D Rai3103_11600 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D Rai3103_13280 peptidylprolyl isomerase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D Rai3103_06030 hypothetical protein K03671 TXN; thioredoxin
D Rai3103_10395 trxA; thioredoxin K03671 TXN; thioredoxin
D Rai3103_04550 trxA; thioredoxin K03671 TXN; thioredoxin
D Rai3103_06880 trxA; thioredoxin K03672 trxC; thioredoxin 2 [EC:1.8.1.8]
D Rai3103_13335 tetratricopeptide repeat protein K05838 ybbN; putative thioredoxin
D Rai3103_03195 redoxin family protein K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
C 04131 Membrane trafficking [BR:rain04131]
D Rai3103_16715 nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D Rai3103_08805 UPF0016 domain-containing protein K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family
D Rai3103_07025 arsA; arsenical pump-driving ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D Rai3103_06340 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Rai3103_11935 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Rai3103_10185 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Rai3103_11830 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Rai3103_14410 MFS transporter K06902 UMF1; MFS transporter, UMF1 family
C 04121 Ubiquitin system [BR:rain04121]
D Rai3103_13815 ubiquitin-like protein Pup K13570 pup; prokaryotic ubiquitin-like protein Pup
C 03051 Proteasome [BR:rain03051]
D Rai3103_13825 prcA; proteasome subunit alpha K03432 psmA; proteasome alpha subunit [EC:3.4.25.1]
D Rai3103_13820 prcB; proteasome subunit beta K03433 psmB; proteasome beta subunit [EC:3.4.25.1]
D Rai3103_15835 pafA; Pup--protein ligase K13571 pafA; proteasome accessory factor A [EC:6.3.1.19]
D Rai3103_15820 WYL domain-containing protein K13572 pafB; proteasome accessory factor B
D Rai3103_15815 WYL domain-containing protein K13573 pafC; proteasome accessory factor C
D Rai3103_13810 proteasome accessory factor PafA2 K20814 dop; Pup amidohydrolase [EC:3.5.1.119]
C 03032 DNA replication proteins [BR:rain03032]
D Rai3103_11145 DUF4440 domain-containing protein K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D Rai3103_08495 integration host factor K03530 hupB; DNA-binding protein HU-beta
D Rai3103_06110 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D Rai3103_07150 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D Rai3103_12645 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D Rai3103_05520 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D Rai3103_00305 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D Rai3103_13485 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Rai3103_06115 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Rai3103_12320 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Rai3103_09705 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Rai3103_11615 endonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Rai3103_00410 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Rai3103_03390 DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Rai3103_16180 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D Rai3103_11845 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Rai3103_13385 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Rai3103_06140 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D Rai3103_15365 DNA topoisomerase 4 subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D Rai3103_06135 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D Rai3103_15390 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D Rai3103_00100 DNA topoisomerase IB K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D Rai3103_09690 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:rain03036]
D Rai3103_09890 Lsr2 family protein K26249 lsr2; nucleoid-associated protein Lsr2
D Rai3103_08495 integration host factor K03530 hupB; DNA-binding protein HU-beta
D Rai3103_06110 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D Rai3103_08585 ArgP/LysG family DNA-binding transcriptional regulator K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D Rai3103_12815 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D Rai3103_11745 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D Rai3103_06545 hypothetical protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D Rai3103_15605 DNA translocase FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D Rai3103_11785 FtsQ-type POTRA domain-containing protein K03589 ftsQ; cell division protein FtsQ
D Rai3103_11770 ftsW; putative lipid II flippase FtsW K03588 ftsW; cell division protein FtsW
D Rai3103_12820 FtsX-like permease family protein K09811 ftsX; cell division transport system permease protein
D Rai3103_11790 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D Rai3103_11800 DUF552 domain-containing protein K09772 sepF; cell division inhibitor SepF
D Rai3103_06075 AAA family ATPase K03496 parA; chromosome partitioning protein
D Rai3103_04360 AAA family ATPase K03496 parA; chromosome partitioning protein
D Rai3103_04370 AAA family ATPase K03496 parA; chromosome partitioning protein
D Rai3103_15845 AAA family ATPase K03496 parA; chromosome partitioning protein
D Rai3103_06070 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Rai3103_06080 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D Rai3103_16490 tyrosine recombinase K03733 xerC; integrase/recombinase XerC
D Rai3103_15850 tyrosine recombinase K04763 xerD; integrase/recombinase XerD
C 03400 DNA repair and recombination proteins [BR:rain03400]
D Rai3103_08545 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D Rai3103_10840 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D Rai3103_15665 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D Rai3103_09905 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D Rai3103_03200 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D Rai3103_10315 helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
D Rai3103_11025 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Rai3103_11055 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Rai3103_05380 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Rai3103_03645 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Rai3103_15310 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D Rai3103_08660 methylated-DNA--[protein]-cysteine S-methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D Rai3103_09080 hypothetical protein K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
D Rai3103_10765 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D Rai3103_11090 Fpg/Nei family DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D Rai3103_16260 mutM; bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D Rai3103_00145 Fpg/Nei family DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
D Rai3103_02800 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D Rai3103_14760 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D Rai3103_05570 deoxyribonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D Rai3103_13385 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Rai3103_11845 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Rai3103_11890 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D Rai3103_04355 AAA family ATPase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Rai3103_12990 AAA family ATPase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Rai3103_01235 AAA family ATPase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Rai3103_02660 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D Rai3103_02655 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D Rai3103_02350 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D Rai3103_13735 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Rai3103_10705 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D Rai3103_10980 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D Rai3103_10975 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D Rai3103_13485 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Rai3103_06115 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Rai3103_12320 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Rai3103_09705 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Rai3103_11615 endonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Rai3103_00410 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Rai3103_03390 DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Rai3103_05520 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D Rai3103_00305 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D Rai3103_13010 AAA family ATPase K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D Rai3103_13015 hypothetical protein K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D Rai3103_13005 recD; exodeoxyribonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D Rai3103_15575 recA; recombinase RecA K03553 recA; recombination protein RecA
D Rai3103_13575 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D Rai3103_13580 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D Rai3103_13570 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D Rai3103_13760 primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D Rai3103_06320 AAA family ATPase K03546 sbcC; DNA repair protein SbcC/Rad50
D Rai3103_06315 sbcD; exonuclease subunit SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
D Rai3103_09920 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D Rai3103_06125 recF; DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF
D Rai3103_16290 DEAD/DEAH box helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D Rai3103_12500 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D Rai3103_15865 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D Rai3103_14715 ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D Rai3103_15480 ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D Rai3103_06140 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D Rai3103_15365 DNA topoisomerase 4 subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D Rai3103_06135 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D Rai3103_15390 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D Rai3103_00100 DNA topoisomerase IB K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D Rai3103_09690 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D Rai3103_08495 integration host factor K03530 hupB; DNA-binding protein HU-beta
D Rai3103_05750 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D Rai3103_11705 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D Rai3103_15505 lexA; transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D Rai3103_15570 recombination regulator RecX K03565 recX; regulatory protein
D Rai3103_01790 AAA family ATPase K03658 helD; DNA helicase IV [EC:5.6.2.4]
D Rai3103_15510 ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D Rai3103_08525 ATP-dependent helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D Rai3103_10100 NUDIX domain-containing protein K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69]
D Rai3103_15855 NUDIX domain-containing protein K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
C 03029 Mitochondrial biogenesis [BR:rain03029]
D Rai3103_16475 elongation factor Ts K02357 tsf; elongation factor Ts
D Rai3103_02640 fusA; elongation factor G K02355 fusA; elongation factor G
D Rai3103_12450 GTPase Era K03595 era; GTPase
D Rai3103_15915 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Rai3103_12300 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Rai3103_13635 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Rai3103_08100 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Rai3103_13415 gatA; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D Rai3103_13420 gatB; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D Rai3103_13410 gatC; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D Rai3103_05520 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D Rai3103_00305 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D Rai3103_08715 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D Rai3103_08720 grpE; nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE
D Rai3103_10290 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Rai3103_01345 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Rai3103_00705 co-chaperone GroES K04078 groES; chaperonin GroES
D Rai3103_01350 co-chaperone GroES K04078 groES; chaperonin GroES
D Rai3103_12380 dnaJ; molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ
D Rai3103_03430 aminotransferase class V-fold PLP-dependent enzyme K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Rai3103_11985 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D Rai3103_16630 heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9]
D Rai3103_08540 cytochrome oxidase assembly protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D Rai3103_06090 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:rain02000]
D Rai3103_07290 ATP-binding cassette domain-containing protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D Rai3103_07280 ATP-binding cassette domain-containing protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D Rai3103_08165 ATP-binding cassette domain-containing protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D Rai3103_15670 ATP-binding cassette domain-containing protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D Rai3103_07235 cydD; thiol reductant ABC exporter subunit CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D Rai3103_11475 ATP-binding cassette domain-containing protein K15738 uup; ABC transport system ATP-binding/permease protein
D Rai3103_06625 sulfate ABC transporter substrate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D Rai3103_06620 cysT; sulfate ABC transporter permease subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D Rai3103_06615 sulfate ABC transporter permease subunit K02047 cysW; sulfate/thiosulfate transport system permease protein
D Rai3103_12415 sulfate ABC transporter permease subunit K02047 cysW; sulfate/thiosulfate transport system permease protein
D Rai3103_06610 cysA; sulfate ABC transporter ATP-binding protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D Rai3103_12410 cysA; sulfate ABC transporter ATP-binding protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D Rai3103_08210 modA; molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D Rai3103_08215 modB; molybdate ABC transporter permease subunit K02018 modB; molybdate transport system permease protein
D Rai3103_08220 ATP-binding cassette domain-containing protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D Rai3103_04630 aliphatic sulfonate ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D Rai3103_04620 ABC transporter permease subunit K15554 ssuC; sulfonate transport system permease protein
D Rai3103_04625 ATP-binding cassette domain-containing protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D Rai3103_03570 ABC transporter substrate-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein
D Rai3103_03575 ABC transporter permease subunit K05846 opuBD; osmoprotectant transport system permease protein
D Rai3103_03580 ABC transporter permease subunit K05846 opuBD; osmoprotectant transport system permease protein
D Rai3103_03585 ATP-binding cassette domain-containing protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D Rai3103_10250 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D Rai3103_13915 ATP-binding cassette domain-containing protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D Rai3103_01280 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D Rai3103_01295 extracellular solute-binding protein K10236 thuE; trehalose/maltose transport system substrate-binding protein
D Rai3103_01290 ABC transporter permease subunit K10237 thuF; trehalose/maltose transport system permease protein
D Rai3103_01285 ABC transporter permease subunit K10238 thuG; trehalose/maltose transport system permease protein
D Rai3103_14720 substrate-binding domain-containing protein K10543 xylF; D-xylose transport system substrate-binding protein
D Rai3103_14730 sugar ABC transporter permease K10544 xylH; D-xylose transport system permease protein
D Rai3103_14725 ATP-binding cassette domain-containing protein K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10]
D Rai3103_05920 substrate-binding domain-containing protein K10546 chvE; putative multiple sugar transport system substrate-binding protein
D Rai3103_01420 substrate-binding domain-containing protein K10546 chvE; putative multiple sugar transport system substrate-binding protein
D Rai3103_05910 sugar ABC transporter permease K10547 gguB; putative multiple sugar transport system permease protein
D Rai3103_01410 sugar ABC transporter permease K10547 gguB; putative multiple sugar transport system permease protein
D Rai3103_05915 ATP-binding cassette domain-containing protein K10548 gguA; putative multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D Rai3103_01415 ATP-binding cassette domain-containing protein K10548 gguA; putative multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D Rai3103_03440 substrate-binding domain-containing protein K10559 rhaS; rhamnose transport system substrate-binding protein
D Rai3103_03450 ABC transporter permease K10560 rhaP; rhamnose transport system permease protein
D Rai3103_03445 ABC transporter permease K10561 rhaQ; rhamnose transport system permease protein
D Rai3103_03455 ATP-binding cassette domain-containing protein K10562 rhaT; rhamnose transport system ATP-binding protein [EC:7.5.2.-]
D Rai3103_09790 substrate-binding domain-containing protein K10439 rbsB; ribose transport system substrate-binding protein
D Rai3103_09800 ATP-binding cassette domain-containing protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D Rai3103_11370 ATP-binding cassette domain-containing protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D Rai3103_12635 ABC transporter permease K02069 STAR2; UDP-glucose/iron transport system permease protein
D Rai3103_05110 extracellular solute-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D Rai3103_13905 ABC transporter permease subunit K02025 ABC.MS.P; multiple sugar transport system permease protein
D Rai3103_05105 ABC transporter permease subunit K02025 ABC.MS.P; multiple sugar transport system permease protein
D Rai3103_13910 ABC transporter permease subunit K02026 ABC.MS.P1; multiple sugar transport system permease protein
D Rai3103_05100 ABC transporter permease subunit K02026 ABC.MS.P1; multiple sugar transport system permease protein
D Rai3103_05670 substrate-binding domain-containing protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein
D Rai3103_02065 substrate-binding domain-containing protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein
D Rai3103_02045 hypothetical protein K02057 ABC.SS.P; simple sugar transport system permease protein
D Rai3103_02050 ABC transporter permease K02057 ABC.SS.P; simple sugar transport system permease protein
D Rai3103_05660 ABC transporter permease K02057 ABC.SS.P; simple sugar transport system permease protein
D Rai3103_05665 ATP-binding cassette domain-containing protein K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-]
D Rai3103_02060 ATP-binding cassette domain-containing protein K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-]
D Rai3103_10095 pstS; phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D Rai3103_10090 pstC; phosphate ABC transporter permease subunit PstC K02037 pstC; phosphate transport system permease protein
D Rai3103_10085 pstA; phosphate ABC transporter permease PstA K02038 pstA; phosphate transport system permease protein
D Rai3103_10080 phosphate ABC transporter ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D Rai3103_10885 ABC transporter permease subunit K10036 glnH; glutamine transport system substrate-binding protein
D Rai3103_10890 ATP-binding cassette domain-containing protein K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1]
D Rai3103_15555 ABC transporter permease subunit K10006 gluC; glutamate transport system permease protein
D Rai3103_15560 ABC transporter permease subunit K10007 gluD; glutamate transport system permease protein
D Rai3103_15545 ATP-binding cassette domain-containing protein K10008 gluA; glutamate transport system ATP-binding protein [EC:7.4.2.1]
D Rai3103_03280 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rai3103_05420 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rai3103_03275 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D Rai3103_03270 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein
D Rai3103_03265 ATP-binding cassette domain-containing protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rai3103_05410 ATP-binding cassette domain-containing protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rai3103_03260 ATP-binding cassette domain-containing protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rai3103_05405 ATP-binding cassette domain-containing protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rai3103_15285 methionine ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D Rai3103_04170 ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D Rai3103_15295 ABC transporter permease subunit K02072 metI; D-methionine transport system permease protein
D Rai3103_04180 ABC transporter permease subunit K02072 metI; D-methionine transport system permease protein
D Rai3103_15290 ATP-binding cassette domain-containing protein K02071 metN; D-methionine transport system ATP-binding protein
D Rai3103_04175 ATP-binding cassette domain-containing protein K02071 metN; D-methionine transport system ATP-binding protein
D Rai3103_02400 ABC transporter permease K05832 K05832; putative tryptophan/tyrosine transport system permease protein
D Rai3103_02395 ATP-binding cassette domain-containing protein K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein
D Rai3103_00120 transporter substrate-binding domain-containing protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D Rai3103_00125 transporter substrate-binding domain-containing protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D Rai3103_11200 ABC transporter permease subunit K15581 oppB; oligopeptide transport system permease protein
D Rai3103_11205 ABC transporter permease subunit K15582 oppC; oligopeptide transport system permease protein
D Rai3103_11210 ATP-binding cassette domain-containing protein K15583 oppD; oligopeptide transport system ATP-binding protein
D Rai3103_12015 hypothetical protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D Rai3103_13085 ABC transporter permease subunit K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D Rai3103_13090 dipeptide ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D Rai3103_12555 hypothetical protein K09815 znuA; zinc transport system substrate-binding protein
D Rai3103_12535 iron chelate uptake ABC transporter family permease subunit K09816 znuB; zinc transport system permease protein
D Rai3103_12540 ATP-binding cassette domain-containing protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D Rai3103_07585 cobalt transporter K02009 cbiN; cobalt/nickel transport protein
D Rai3103_07580 cbiQ; cobalt ECF transporter T component CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D Rai3103_07590 energy-coupling factor ABC transporter permease K02007 cbiM; cobalt/nickel transport system permease protein
D Rai3103_07575 ATP-binding cassette domain-containing protein K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D Rai3103_13870 biotin transporter BioY K03523 bioY; biotin transport system substrate-specific component
D Rai3103_13855 energy-coupling factor transporter transmembrane protein EcfT K16783 bioN; biotin transport system permease protein
D Rai3103_13860 ATP-binding cassette domain-containing protein K16784 bioM; biotin transport system ATP-binding protein [EC:7.6.2.-]
D Rai3103_09585 ABC transporter permease K09690 wzm; homopolymeric O-antigen transport system permease protein
D Rai3103_09580 ATP-binding cassette domain-containing protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D Rai3103_14625 ABC transporter permease subunit K25180 ybhR; drug efflux transport system permease protein
D Rai3103_14620 ABC transporter permease subunit K25181 ybhS; drug efflux transport system permease protein
D Rai3103_14615 ATP-binding cassette domain-containing protein K25182 ybhF; drug efflux transport system ATP-binding protein
D Rai3103_14630 ATP-binding cassette domain-containing protein K25182 ybhF; drug efflux transport system ATP-binding protein
D Rai3103_14610 HlyD family efflux transporter periplasmic adaptor subunit K25183 ybhG; membrane fusion protein YbhG
D Rai3103_00745 hypothetical protein K25149 narB; polyether ionophore transport system permease protein
D Rai3103_00740 ATP-binding cassette domain-containing protein K25150 narA; polyether ionophore transport system ATP-binding protein
D Rai3103_12820 FtsX-like permease family protein K09811 ftsX; cell division transport system permease protein
D Rai3103_12815 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D Rai3103_16625 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D Rai3103_14810 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D Rai3103_15210 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D Rai3103_03965 ABC transporter permease subunit K01992 ABC-2.P; ABC-2 type transport system permease protein
D Rai3103_00480 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D Rai3103_03960 ATP-binding cassette domain-containing protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Rai3103_14815 ATP-binding cassette domain-containing protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Rai3103_15200 ATP-binding cassette domain-containing protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Rai3103_00475 ATP-binding cassette domain-containing protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Rai3103_16620 ATP-binding cassette domain-containing protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Rai3103_08815 FtsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein
D Rai3103_14285 FtsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein
D Rai3103_14800 FtsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein
D Rai3103_08050 FtsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein
D Rai3103_14795 ATP-binding cassette domain-containing protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Rai3103_08045 ATP-binding cassette domain-containing protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Rai3103_08820 ATP-binding cassette domain-containing protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Rai3103_16595 sufC; Fe-S cluster assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein
D Rai3103_07215 bile acid:sodium symporter K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D Rai3103_05505 MATE family efflux transporter K26937 dinF; MATE family, multidrug efflux pump
D Rai3103_13850 sugar porter family MFS transporter K06609 iolT; MFS transporter, SP family, major inositol transporter
D Rai3103_04055 MFS transporter K06609 iolT; MFS transporter, SP family, major inositol transporter
D Rai3103_04405 MFS transporter K06610 iolF; MFS transporter, SP family, inositol transporter
D Rai3103_00545 MFS transporter K08177 oxlT; MFS transporter, OFA family, oxalate/formate antiporter
D Rai3103_05855 MFS transporter K03535 gudP; MFS transporter, ACS family, glucarate transporter
D Rai3103_16430 MFS transporter K05548 benK; MFS transporter, AAHS family, benzoate transport protein
D Rai3103_02175 MFS transporter K03449 MFS.CP; MFS transporter, CP family, cyanate transporter
D Rai3103_08915 MFS transporter K03449 MFS.CP; MFS transporter, CP family, cyanate transporter
D Rai3103_08170 MFS transporter K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter
D Rai3103_02560 MFS transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D Rai3103_04965 MFS transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D Rai3103_11345 Bcr/CflA family efflux MFS transporter K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D Rai3103_04940 Bcr/CflA family efflux MFS transporter K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D Rai3103_05720 DHA2 family efflux MFS transporter permease subunit K08166 mmr; MFS transporter, DHA2 family, methylenomycin A resistance protein
D Rai3103_16795 MFS transporter K08170 norB; MFS transporter, DHA2 family, multidrug resistance protein
D Rai3103_11480 DHA2 family efflux MFS transporter permease subunit K18926 lmrB; MFS transporter, DHA2 family, lincomycin resistance protein
D Rai3103_05210 MFS transporter K18833 cmr; MFS transporter, DHA3 family, multidrug efflux protein
D Rai3103_08160 MFS transporter K08221 yitG; MFS transporter, ACDE family, multidrug resistance protein
D Rai3103_15875 MFS transporter K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein
D Rai3103_14410 MFS transporter K06902 UMF1; MFS transporter, UMF1 family
D Rai3103_11190 MFS transporter K08369 ydjE; MFS transporter, putative metabolite:H+ symporter
D Rai3103_03970 ptsP; phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D Rai3103_03990 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr
D Rai3103_05685 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr
D Rai3103_06910 PTS glucose transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D Rai3103_06925 PTS N-acetylglucosamine transporter subunit IIBC K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D Rai3103_06915 hypothetical protein K02803 nagEb; N-acetylglucosamine PTS system EIIB component [EC:2.7.1.193]
D Rai3103_08675 PTS beta-glucoside transporter subunit EIIBCA K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D Rai3103_01875 PTS beta-glucoside transporter subunit EIIBCA K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D Rai3103_03985 PTS lactose transporter subunit IIC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D Rai3103_05690 PTS sorbitol transporter subunit IIA K02781 srlB; glucitol/sorbitol PTS system EIIA component [EC:2.7.1.198]
D Rai3103_05695 PTS sorbitol transporter subunit IIB K02782 srlE; glucitol/sorbitol PTS system EIIB component [EC:2.7.1.198]
D Rai3103_05700 srlA; PTS glucitol/sorbitol transporter subunit IIC K02783 srlA; glucitol/sorbitol PTS system EIIC component
D Rai3103_04585 HPr family phosphocarrier protein K05881 dhaM; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaM [EC:2.7.1.121]
D Rai3103_14745 potassium channel protein K10716 kch; voltage-gated potassium channel
D Rai3103_16085 amt; ammonium transporter K03320 amt; ammonium transporter, Amt family
D Rai3103_12735 VWA domain-containing protein K07114 yfbK; Ca-activated chloride channel homolog
D Rai3103_03240 formate/nitrite transporter family protein K21993 fdhC; formate transporter
D Rai3103_10375 large conductance mechanosensitive channel protein MscL K03282 mscL; large conductance mechanosensitive channel
D Rai3103_06295 mechanosensitive ion channel K22044 ybiO; moderate conductance mechanosensitive channel
D Rai3103_06420 urea transporter K08717 utp; urea transporter
D Rai3103_09770 CrcB family protein K06199 crcB; fluoride exporter
D Rai3103_09775 chromosome condensation protein CrcB K06199 crcB; fluoride exporter
D Rai3103_01155 DUF21 domain-containing protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D Rai3103_12445 DUF21 domain-containing protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D Rai3103_14685 amino acid permease K11737 cycA; D-serine/D-alanine/glycine transporter
D Rai3103_08275 amino acid permease K11737 cycA; D-serine/D-alanine/glycine transporter
D Rai3103_12110 amino acid permease K14052 puuP; putrescine importer
D Rai3103_03860 cation diffusion facilitator family transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein
D Rai3103_04775 cation diffusion facilitator family transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein
D Rai3103_14705 zinc permease K07238 TC.ZIP; zinc transporter, ZIP family
D Rai3103_05605 hypothetical protein K11741 sugE; quaternary ammonium compound-resistance protein SugE
D Rai3103_11885 QacE family quaternary ammonium compound efflux SMR transporter K11741 sugE; quaternary ammonium compound-resistance protein SugE
D Rai3103_12510 L-lactate permease K03303 lutP; lactate permease
D Rai3103_06280 sodium/solute symporter K14393 actP; cation/acetate symporter
D Rai3103_01095 actP; cation/acetate symporter ActP K14393 actP; cation/acetate symporter
D Rai3103_05360 dctA; C4-dicarboxylate transporter DctA K11103 dctA; aerobic C4-dicarboxylate transport protein
D Rai3103_05390 sodium:proton antiporter K24163 nhaK; monovalent cation/hydrogen antiporter
D Rai3103_06325 uracil-xanthine permease K24206 uacT; uric acid transporter
D Rai3103_10345 NCS2 family permease K06901 pbuG; adenine/guanine/hypoxanthine permease
D Rai3103_14655 hypothetical protein K03281 clcA; chloride channel protein, CIC family
D Rai3103_12655 HoxN/HupN/NixA family nickel/cobalt transporter K07241 hoxN; nickel/cobalt transporter (NiCoT) family protein
D Rai3103_15470 sulP; sulfate permease K03321 TC.SULP; sulfate permease, SulP family
D Rai3103_03060 STAS domain-containing protein K03321 TC.SULP; sulfate permease, SulP family
D Rai3103_07025 arsA; arsenical pump-driving ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D Rai3103_03425 arsenic transporter K03893 arsB; arsenical pump membrane protein
D Rai3103_06985 arsB; ACR3 family arsenite efflux transporter K03325 ACR3; arsenite transporter
D Rai3103_16710 Na+/H+ antiporter subunit A K05565 mnhA; multicomponent Na+:H+ antiporter subunit A
D Rai3103_16705 Na(+)/H(+) antiporter subunit C K05567 mnhC; multicomponent Na+:H+ antiporter subunit C
D Rai3103_16700 Na+/H+ antiporter subunit D K05568 mnhD; multicomponent Na+:H+ antiporter subunit D
D Rai3103_16695 Na+/H+ antiporter subunit E K05569 mnhE; multicomponent Na+:H+ antiporter subunit E
D Rai3103_16685 hypothetical protein K05571 mnhG; multicomponent Na+:H+ antiporter subunit G
D Rai3103_06215 murJ; murein biosynthesis integral membrane protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase
D Rai3103_06430 AEC family transporter K13936 mdcF; malonate transporter and related proteins
D Rai3103_15460 AEC family transporter K13936 mdcF; malonate transporter and related proteins
D Rai3103_08180 AEC family transporter K24180 mleP; malate permease and related proteins
D Rai3103_15690 potassium transporter Kup K03549 kup; KUP system potassium uptake protein
D Rai3103_15695 potassium transporter Kup K03549 kup; KUP system potassium uptake protein
D Rai3103_08580 amino acid transporter K06895 lysE; L-lysine exporter family protein LysE/ArgO
D Rai3103_15220 branched-chain amino acid ABC transporter permease K26605 azlC; branched chain amino acid efflux pump
D Rai3103_15215 AzlD domain-containing protein K26606 azlD; branched chain amino acid efflux pump
D Rai3103_10850 AI-2E family transporter K20469 K20469; putative heme transporter
D Rai3103_09335 AI-2E family transporter K20469 K20469; putative heme transporter
D Rai3103_05265 queuosine precursor transporter K09125 yhhQ; queuosine precursor transporter
D Rai3103_03600 VIT family protein K22736 VIT; vacuolar iron transporter family protein
D Rai3103_02015 MarC family protein K05595 marC; multiple antibiotic resistance protein
D Rai3103_11770 ftsW; putative lipid II flippase FtsW K03588 ftsW; cell division protein FtsW
D Rai3103_08805 UPF0016 domain-containing protein K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family
D Rai3103_15380 PbrT family lead (Pb2+) uptake porter K07224 efeO; iron uptake system component EfeO
D Rai3103_15385 efeB; deferrochelatase/peroxidase EfeB K16301 efeB; deferrochelatase/peroxidase EfeB [EC:1.11.1.-]
D Rai3103_11900 sodium-translocating pyrophosphatase K15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1]
D Rai3103_08135 cytochrome c biogenesis protein CcdA K06196 ccdA; cytochrome c-type biogenesis protein
D Rai3103_10035 cytochrome c biogenesis protein CcdA K06196 ccdA; cytochrome c-type biogenesis protein
D Rai3103_02565 nitrate reductase subunit alpha K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D Rai3103_02570 narH; nitrate reductase subunit beta K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D Rai3103_02580 narI; respiratory nitrate reductase subunit gamma K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-]
D Rai3103_09545 polysaccharide biosynthesis tyrosine autokinase K25588 K25588; tyrosine-protein kinase [EC:2.7.10.3]
D Rai3103_06605 ferrous iron transport protein A K04758 feoA; ferrous iron transport protein A
D Rai3103_06600 ferrous iron transporter B K04759 feoB; ferrous iron transport protein B
D Rai3103_01385 tryptophan-rich sensory protein K05770 TSPO; translocator protein
D Rai3103_16730 hypothetical protein K14166 ycnJ; copper transport protein
C 02044 Secretion system [BR:rain02044]
D Rai3103_11590 hypothetical protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D Rai3103_12230 prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D Rai3103_12205 hypothetical protein K02279 cpaB; pilus assembly protein CpaB
D Rai3103_12210 AAA family ATPase K02282 cpaE; pilus assembly protein CpaE
D Rai3103_06245 secretion protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D Rai3103_03160 TadA family conjugal transfer-associated ATPase K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D Rai3103_12215 CpaF family protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D Rai3103_03155 hypothetical protein K12510 tadB; tight adherence protein B
D Rai3103_12220 type II secretion system protein F K12510 tadB; tight adherence protein B
D Rai3103_06255 hypothetical protein K12511 tadC; tight adherence protein C
D Rai3103_12225 type II secretion system F family protein K12511 tadC; tight adherence protein C
D Rai3103_12190 Flp family type IVb pilin K02651 flp; pilus assembly protein Flp/PilA
D Rai3103_11805 YggT family protein K02221 yggT; YggT family protein
D Rai3103_12310 hypothetical protein K02237 comEA; competence protein ComEA
D Rai3103_12315 MBL fold metallo-hydrolase K02238 comEC; competence protein ComEC
D Rai3103_13590 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D Rai3103_13595 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D Rai3103_11955 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D Rai3103_02435 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D Rai3103_16240 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D Rai3103_16245 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D Rai3103_13585 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D Rai3103_06090 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Rai3103_15805 tatA; twin-arginine translocase TatA/TatE family subunit K03116 tatA; sec-independent protein translocase protein TatA
D Rai3103_11310 translocase K03117 tatB; sec-independent protein translocase protein TatB
D Rai3103_15800 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:rain02042]
D Rai3103_01155 DUF21 domain-containing protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D Rai3103_12445 DUF21 domain-containing protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D Rai3103_10925 hemolysin III family protein K11068 hlyIII; hemolysin III
D Rai3103_01945 phosphoesterase K01114 plc; phospholipase C [EC:3.1.4.3]
D Rai3103_14045 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3]
C 02022 Two-component system [BR:rain02022]
D Rai3103_10195 two-component sensor histidine kinase K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D Rai3103_10200 response regulator K07776 regX3; two-component system, OmpR family, response regulator RegX3
D Rai3103_12870 HAMP domain-containing protein K07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3]
D Rai3103_12865 response regulator K07670 mtrA; two-component system, OmpR family, response regulator MtrA
D Rai3103_08380 two-component sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D Rai3103_08760 HAMP domain-containing protein K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D Rai3103_08385 response regulator K02483 K02483; two-component system, OmpR family, response regulator
D Rai3103_08765 response regulator K02483 K02483; two-component system, OmpR family, response regulator
D Rai3103_00335 hypothetical protein K02476 K02476; two-component system, CitB family, sensor kinase [EC:2.7.13.3]
D Rai3103_13135 PAS domain-containing protein K00936 pdtaS; two-component system, sensor histidine kinase PdtaS [EC:2.7.13.3]
D Rai3103_11840 response regulator K22010 pdtaR; two-component system, response regulator PdtaR
C 02035 Bacterial motility proteins [BR:rain02035]
D Rai3103_11590 hypothetical protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D Rai3103_12230 prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D Rai3103_12190 Flp family type IVb pilin K02651 flp; pilus assembly protein Flp/PilA
D Rai3103_12205 hypothetical protein K02279 cpaB; pilus assembly protein CpaB
D Rai3103_12210 AAA family ATPase K02282 cpaE; pilus assembly protein CpaE
D Rai3103_06245 secretion protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D Rai3103_03160 TadA family conjugal transfer-associated ATPase K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D Rai3103_12215 CpaF family protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:rain04812]
D Rai3103_06885 amrB; AmmeMemoRadiSam system protein B K06990 MEMO1; MEMO1 family protein
D Rai3103_11790 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D Rai3103_06075 AAA family ATPase K03496 parA; chromosome partitioning protein
D Rai3103_04360 AAA family ATPase K03496 parA; chromosome partitioning protein
D Rai3103_04370 AAA family ATPase K03496 parA; chromosome partitioning protein
D Rai3103_15845 AAA family ATPase K03496 parA; chromosome partitioning protein
D Rai3103_06070 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:rain04147]
D Rai3103_10720 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Rai3103_06340 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Rai3103_11935 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Rai3103_11940 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D Rai3103_11830 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Rai3103_11600 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D Rai3103_10295 membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D Rai3103_10290 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Rai3103_01345 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Rai3103_08715 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D Rai3103_08025 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Rai3103_06195 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D Rai3103_07215 bile acid:sodium symporter K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D Rai3103_05540 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rai3103_03900 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rai3103_00265 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rai3103_13865 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rai3103_14085 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rai3103_00795 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rai3103_01375 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rai3103_00945 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D Rai3103_02430 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D Rai3103_13600 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D Rai3103_15920 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D Rai3103_12455 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D Rai3103_04305 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D Rai3103_13340 glgB; 1,4-alpha-glucan branching protein GlgB K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D Rai3103_00115 glpK; glycerol kinase GlpK K00864 glpK; glycerol kinase [EC:2.7.1.30]
D Rai3103_13950 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rai3103_10585 glnT; type III glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rai3103_11390 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rai3103_11460 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rai3103_10015 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D Rai3103_05385 pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D Rai3103_13095 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Rai3103_01190 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D Rai3103_14430 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rai3103_00520 electron transfer flavoprotein subunit alpha/FixB family protein K03522 fixB; electron transfer flavoprotein alpha subunit
D Rai3103_00530 hypothetical protein K03522 fixB; electron transfer flavoprotein alpha subunit
D Rai3103_11970 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D Rai3103_07415 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D Rai3103_10185 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
C 02048 Prokaryotic defense system [BR:rain02048]
D Rai3103_00670 DUF4145 domain-containing protein K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D Rai3103_08935 HsdR family type I site-specific deoxyribonuclease K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D Rai3103_00675 hypothetical protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D Rai3103_08945 hypothetical protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D Rai3103_00685 N-6 DNA methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D Rai3103_08950 N-6 DNA methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D Rai3103_01710 restriction endonuclease K07448 mrr; restriction system protein
D Rai3103_08940 restriction endonuclease K07448 mrr; restriction system protein
D Rai3103_04780 type II toxin-antitoxin system PemK/MazF family toxin K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D Rai3103_04785 ribbon-helix-helix protein, CopG family K26983 mazE3; antitoxin MazE3
D Rai3103_01630 Txe/YoeB family addiction module toxin K19158 yoeB; toxin YoeB [EC:3.1.-.-]
D Rai3103_01625 type II toxin-antitoxin system prevent-host-death family antitoxin K19159 yefM; antitoxin YefM
D Rai3103_09135 PspC domain-containing protein K03973 pspC; phage shock protein C
D Rai3103_05885 type II toxin-antitoxin system death-on-curing family toxin K07341 doc; death on curing protein
D Rai3103_00490 ImmA/IrrE family metallo-endopeptidase K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D Rai3103_11790 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D Rai3103_15720 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Rai3103_15825 tRNA glutamyl-Q(34) synthetase GluQRS K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Rai3103_03430 aminotransferase class V-fold PLP-dependent enzyme K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:rain01504]
D Rai3103_05210 MFS transporter K18833 cmr; MFS transporter, DHA3 family, multidrug efflux protein
D Rai3103_16795 MFS transporter K08170 norB; MFS transporter, DHA2 family, multidrug resistance protein
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:rain00537]
D Rai3103_10295 membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:rain03100]
D Rai3103_10465 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Rai3103_12040 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Rai3103_12045 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Rai3103_05795 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Rai3103_13170 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Rai3103_03690 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Rai3103_10390 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Rai3103_00325 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Rai3103_12665 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D Rai3103_09420 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D Rai3103_15070 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D Rai3103_15090 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D Rai3103_10655 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D Rai3103_15710 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D Rai3103_15700 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Rai3103_03035 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Rai3103_15705 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Rai3103_15075 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Rai3103_15095 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Rai3103_08150 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Rai3103_16805 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Rai3103_00380 tRNA-His K14226 tRNA-His; tRNA His
D Rai3103_06160 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D Rai3103_00720 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Rai3103_16075 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Rai3103_11835 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Rai3103_07385 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Rai3103_10740 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Rai3103_03020 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Rai3103_00700 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Rai3103_12685 tRNA-Ile K14230 tRNA-Met; tRNA Met
D Rai3103_12140 tRNA-Met K14230 tRNA-Met; tRNA Met
D Rai3103_13065 tRNA-Met K14230 tRNA-Met; tRNA Met
D Rai3103_02745 tRNA-Met K14230 tRNA-Met; tRNA Met
D Rai3103_09415 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D Rai3103_13880 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Rai3103_03235 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Rai3103_16775 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Rai3103_03730 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Rai3103_03715 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Rai3103_03405 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Rai3103_03520 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Rai3103_09720 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Rai3103_02750 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Rai3103_02715 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D Rai3103_02755 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D Rai3103_12790 tRNA-Val K14237 tRNA-Val; tRNA Val
D Rai3103_15065 tRNA-Val K14237 tRNA-Val; tRNA Val
D Rai3103_15085 tRNA-Val K14237 tRNA-Val; tRNA Val
D Rai3103_15100 tRNA-Val K14237 tRNA-Val; tRNA Val
D Rai3103_14855 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D Rai3103_01315 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Rai3103_04660 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Rai3103_15910 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Rai3103_01310 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Rai3103_15905 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Rai3103_04655 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Rai3103_01305 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Rai3103_15900 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Rai3103_04650 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Rai3103_03400 ffs; signal recognition particle sRNA small type K01983 ffs; SRP RNA
D Rai3103_11360 rnpB; RNase P RNA component class A K01978 rnpB; M1 RNA
D Rai3103_12850 ssrA; transfer-messenger RNA K15035 ssrA; transfer-messenger RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D Rai3103_01065 decaprenylphospho-beta-D-erythro-pentofuranosid-2-ulose 2-reductase K16652 dprE2; decaprenylphospho-beta-D-erythro-pentofuranosid-2-ulose 2-reductase [EC:1.1.1.333]
D Rai3103_05725 aldo/keto reductase K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346]
D Rai3103_02595 aldo/keto reductase K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346]
D Rai3103_08105 aldo/keto reductase K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346]
D Rai3103_05845 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase PdxA K22024 pdxA2; 4-phospho-D-threonate 3-dehydrogenase / 4-phospho-D-erythronate 3-dehydrogenase [EC:1.1.1.408 1.1.1.409]
D Rai3103_05545 mgrA; L-glyceraldehyde 3-phosphate reductase K19265 gpr; L-glyceraldehyde 3-phosphate reductase [EC:1.1.1.-]
D Rai3103_05115 zinc-binding dehydrogenase K23271 eltD; erythritol/L-threitol dehydrogenase [EC:1.1.1.-]
D Rai3103_14545 FAD-binding protein K16653 dprE1; decaprenylphospho-beta-D-ribofuranose 2-oxidase [EC:1.1.98.3]
D Rai3103_01600 NADP oxidoreductase K06988 fno; 8-hydroxy-5-deazaflavin:NADPH oxidoreductase [EC:1.5.1.40]
D Rai3103_05470 NADP oxidoreductase K06988 fno; 8-hydroxy-5-deazaflavin:NADPH oxidoreductase [EC:1.5.1.40]
D Rai3103_15080 diguanylate cyclase K06988 fno; 8-hydroxy-5-deazaflavin:NADPH oxidoreductase [EC:1.5.1.40]
D Rai3103_01080 NAD(P)H-quinone dehydrogenase K23842 lpdA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D Rai3103_14355 zinc-binding dehydrogenase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D Rai3103_10060 mycothione reductase K17883 mtr; mycothione reductase [EC:1.8.1.15]
D Rai3103_08830 ahpF; alkyl hydroperoxide reductase subunit F K03387 ahpF; NADH-dependent peroxiredoxin subunit F [EC:1.8.1.-]
D Rai3103_15165 msrB; peptide-methionine (R)-S-oxide reductase MsrB K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D Rai3103_00715 thioredoxin-dependent thiol peroxidase K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D Rai3103_14490 thiol peroxidase K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D Rai3103_08825 ahpC; alkyl hydroperoxide reductase subunit C K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26]
D Rai3103_14260 OsmC family peroxiredoxin K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]
D Rai3103_03565 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D Rai3103_14755 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D Rai3103_06860 taurine catabolism dioxygenase K22303 atsK; alkyl sulfatase [EC:1.14.11.77]
D Rai3103_12485 hemin transporter K05916 hmp; nitric oxide dioxygenase [EC:1.14.12.17]
D Rai3103_10555 DUF3445 domain-containing protein K22342 dmmA; dimethylamine monooxygenase subunit A [EC:1.14.13.238]
D Rai3103_10565 DUF3445 domain-containing protein K22342 dmmA; dimethylamine monooxygenase subunit A [EC:1.14.13.238]
D Rai3103_10560 2Fe-2S iron-sulfur cluster binding domain-containing protein K22343 dmmB; dimethylamine monooxygenase subunit B [EC:1.14.13.238]
D Rai3103_10570 2Fe-2S iron-sulfur cluster binding domain-containing protein K22343 dmmB; dimethylamine monooxygenase subunit B [EC:1.14.13.238]
D Rai3103_10575 hypothetical protein K22344 dmmC; dimethylamine monooxygenase subunit C [EC:1.14.13.238]
D Rai3103_15280 NtaA/DmoA family FMN-dependent monooxygenase K20938 ladA; long-chain alkane monooxygenase [EC:1.14.14.28]
D Rai3103_06965 merA; mercury(II) reductase K00520 merA; mercuric reductase [EC:1.16.1.1]
D Rai3103_03025 arsenate reductase ArsC K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4]
D Rai3103_06980 phosphotyrosine protein phosphatase K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4]
D Rai3103_05960 amrS; AmmeMemoRadiSam system radical SAM enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D Rai3103_06895 amrS; AmmeMemoRadiSam system radical SAM enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D Rai3103_00800 methyltransferase domain-containing protein K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D Rai3103_08460 sugar O-acetyltransferase K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79]
D Rai3103_10105 mshD; mycothiol synthase K15520 mshD; mycothiol synthase [EC:2.3.1.189]
D Rai3103_15040 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D Rai3103_03800 leucyl/phenylalanyl-tRNA--protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D Rai3103_14195 glycosyltransferase K15521 mshA; D-inositol-3-phosphate glycosyltransferase [EC:2.4.1.250]
D Rai3103_12345 glycosyltransferase K15521 mshA; D-inositol-3-phosphate glycosyltransferase [EC:2.4.1.250]
D Rai3103_03780 larB; nickel pincer cofactor biosynthesis protein LarB K06898 larB; pyridinium-3,5-biscarboxylic acid mononucleotide synthase [EC:2.5.1.143]
D Rai3103_08225 hypothetical protein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D Rai3103_07410 DAK2 domain-containing protein K20902 derK; D-erythrulose 4-kinase [EC:2.7.1.210]
D Rai3103_05085 DAK2 domain-containing protein K20902 derK; D-erythrulose 4-kinase [EC:2.7.1.210]
D Rai3103_05850 four-carbon acid sugar kinase family protein K22129 dtnK; D-threonate/D-erythronate kinase [EC:2.7.1.219 2.7.1.220]
D Rai3103_09915 disA; DNA integrity scanning protein DisA K07067 disA; diadenylate cyclase [EC:2.7.7.85]
D Rai3103_01850 phosphoenolpyruvate synthase K22579 rph; rifampicin phosphotransferase [EC:2.7.9.6]
D Rai3103_05135 hypothetical protein K22579 rph; rifampicin phosphotransferase [EC:2.7.9.6]
D Rai3103_11630 alpha/beta fold hydrolase K03928 yvaK; carboxylesterase [EC:3.1.1.1]
D Rai3103_10265 O-acetyl-ADP-ribose deacetylase K23518 MACROD; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106]
D Rai3103_09470 thioesterase K18700 flK; fluoroacetyl-CoA thioesterase [EC:3.1.2.29]
D Rai3103_00255 hypothetical protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D Rai3103_00260 acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D Rai3103_05600 protein-tyrosine-phosphatase K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]
D Rai3103_12035 histidine phosphatase family protein K22306 gpgP; glucosyl-3-phosphoglycerate phosphatase [EC:3.1.3.85]
D Rai3103_12955 PHP domain-containing protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D Rai3103_09755 histidine phosphatase family protein K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D Rai3103_02585 phosphoglycerate mutase K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D Rai3103_10535 YchF/TatD family DNA exonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D Rai3103_13290 nucS; endonuclease NucS K07503 nucS; endonuclease [EC:3.1.-.-]
D Rai3103_09430 1,3-beta-glucanase K01180 E3.2.1.6; endo-1,3(4)-beta-glucanase [EC:3.2.1.6]
D Rai3103_13920 glycogen debranching protein K23086 ggH; glucosylglycerate hydrolase [EC:3.2.1.208]
D Rai3103_16495 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D Rai3103_02840 polysaccharide deacetylase family protein K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D Rai3103_10870 mca; mycothiol conjugate amidase Mca K18455 mca; mycothiol S-conjugate amidase [EC:3.5.1.115]
D Rai3103_16195 hydrolase K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128]
D Rai3103_08515 RidA family protein K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D Rai3103_12720 AAA domain-containing protein K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D Rai3103_11725 AAA domain-containing protein K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D Rai3103_02270 bifunctional ADP-dependent (S)-NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D Rai3103_10330 larE; ATP-dependent sacrificial sulfur transferase LarE K06864 larE; pyridinium-3,5-biscarboxylic acid mononucleotide sulfurtransferase [EC:4.4.1.37]
D Rai3103_03785 larC; nickel pincer cofactor biosynthesis protein LarC K09121 larC; pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel chelatase [EC:4.99.1.12]
D Rai3103_05835 triose-phosphate isomerase K21910 eryH; L-erythrulose 1-phosphate isomerase [EC:5.3.1.33]
D Rai3103_01475 methylmalonyl-CoA mutase K11942 icmF; isobutyryl-CoA mutase [EC:5.4.99.13]
D Rai3103_01225 methylmalonyl-CoA mutase K25821 icmB; isobutyryl-CoA mutase small subunit [EC:5.4.99.13]
D Rai3103_16040 cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase K15526 mshC; L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [EC:6.3.1.13]
D Rai3103_08195 acetyl-CoA carboxyl transferase K04104 accD3; acyl-CoA carboxylase subunit beta [EC:6.4.1.-]
D Rai3103_01930 mgtA; magnesium-translocating P-type ATPase K01531 mgtA; P-type Mg2+ transporter [EC:7.2.2.14]
C 99981 Carbohydrate metabolism
D Rai3103_04090 TIM barrel protein K06605 iolH; myo-inositol catabolism protein IolH
D Rai3103_12515 (Fe-S)-binding protein K18928 lldE; L-lactate dehydrogenase complex protein LldE
D Rai3103_12520 iron-sulfur cluster-binding protein K18929 lldF; L-lactate dehydrogenase complex protein LldF
D Rai3103_12525 lactate utilization protein C K00782 lldG; L-lactate dehydrogenase complex protein LldG
C 99982 Energy metabolism
D Rai3103_03515 fdhD; formate dehydrogenase accessory sulfurtransferase FdhD K02379 fdhD; FdhD protein
D Rai3103_16585 SUF system NifU family Fe-S cluster assembly protein K04488 iscU; nitrogen fixation protein NifU and related proteins
D Rai3103_00525 electron transfer flavoprotein subunit beta K03521 fixA; electron transfer flavoprotein beta subunit
D Rai3103_00535 hypothetical protein K03521 fixA; electron transfer flavoprotein beta subunit
D Rai3103_04155 hypothetical protein K09165 K09165; dodecin
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
C 99986 Glycan metabolism
D Rai3103_09730 hypothetical protein K21687 rpfA; resuscitation-promoting factor RpfA
D Rai3103_10540 DUF348 domain-containing protein K21688 rpfB; resuscitation-promoting factor RpfB
C 99987 Cofactor metabolism
D Rai3103_03930 phosphotransferase K03688 ubiB; ubiquinone biosynthesis protein
C 99988 Secondary metabolism
C 99999 Others
D Rai3103_03545 DoxX family membrane protein K15977 K15977; putative oxidoreductase
D Rai3103_11455 DoxX family membrane protein K15977 K15977; putative oxidoreductase
D Rai3103_12800 hypothetical protein K06999 K06999; phospholipase/carboxylesterase
D Rai3103_07700 phospholipase K06999 K06999; phospholipase/carboxylesterase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D Rai3103_05705 transcriptional regulator K02466 gutM; glucitol operon activator protein
D Rai3103_10335 cold-shock protein K03704 cspA; cold shock protein
D Rai3103_03635 cold-shock protein K03704 cspA; cold shock protein
C 99974 Translation
D Rai3103_00105 MBL fold metallo-hydrolase K07576 K07576; metallo-beta-lactamase family protein
C 99975 Protein processing
D Rai3103_00855 clpS; ATP-dependent Clp protease adapter ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D Rai3103_16770 trigger factor K03545 tig; trigger factor
D Rai3103_12830 smpB; SsrA-binding protein SmpB K03664 smpB; SsrA-binding protein
D Rai3103_04810 hypC; HypC/HybG/HupF family hydrogenase formation chaperone K04653 hypC; hydrogenase expression/formation protein HypC
D Rai3103_04865 hypC; HypC/HybG/HupF family hydrogenase formation chaperone K04653 hypC; hydrogenase expression/formation protein HypC
D Rai3103_04870 hypD; hydrogenase formation protein HypD K04654 hypD; hydrogenase expression/formation protein HypD
D Rai3103_16165 YifB family Mg chelatase-like AAA ATPase K07391 comM; magnesium chelatase family protein
D Rai3103_10040 cytochrome c biogenesis protein ResB K07399 resB; cytochrome c biogenesis protein
C 99976 Replication and repair
D Rai3103_11000 rmuC; DNA recombination protein RmuC K09760 rmuC; DNA recombination protein RmuC
D Rai3103_16170 YraN family protein K07460 yraN; putative endonuclease
D Rai3103_16160 DNA processing protein DprA K04096 smf; DNA processing protein
D Rai3103_13640 AAA family ATPase K07478 ycaJ; putative ATPase
D Rai3103_00835 IS110 family transposase K07486 K07486; transposase
D Rai3103_06380 IS110 family transposase K07486 K07486; transposase
D Rai3103_14900 IS256 family transposase K07493 K07493; putative transposase
D Rai3103_07795 IS256 family transposase K07493 K07493; putative transposase
D Rai3103_06725 IS3 family transposase K07497 K07497; putative transposase
C 99979 Viral proteins
C 99998 Others
D Rai3103_11520 PspA/IM30 family protein K03969 pspA; phage shock protein A
D Rai3103_04555 rhodanese-like domain-containing protein K03972 pspE; phage shock protein E
D Rai3103_00500 restriction endonuclease K07504 K07504; predicted type IV restriction endonuclease
D Rai3103_03370 YbaB/EbfC family nucleoid-associated protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D Rai3103_03285 MFS transporter K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family
D Rai3103_05160 MFS transporter K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family
D Rai3103_03005 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D Rai3103_04300 sodium/solute symporter K03307 TC.SSS; solute:Na+ symporter, SSS family
D Rai3103_01105 permease K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family
D Rai3103_06435 NCS1 family nucleobase:cation symporter-1 K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family
D Rai3103_06515 NCS1 family nucleobase:cation symporter-1 K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family
C 99978 Cell growth
D Rai3103_11075 ric; iron-sulfur cluster repair di-iron protein K07322 ytfE; regulator of cell morphogenesis and NO signaling
D Rai3103_04890 iron-sulfur cluster repair di-iron protein K07322 ytfE; regulator of cell morphogenesis and NO signaling
D Rai3103_06085 protein jag K06346 jag; spoIIIJ-associated protein
C 99993 Cell motility
C 99995 Signaling proteins
D Rai3103_08480 carbon starvation protein A K06200 cstA; carbon starvation protein
D Rai3103_10150 typA; translational GTPase TypA K06207 typA; GTP-binding protein
D Rai3103_12435 AAA family ATPase K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D Rai3103_10935 AAA family ATPase K07175 phoH2; PhoH-like ATPase
D Rai3103_00415 CBS domain-containing protein K07182 K07182; CBS domain-containing protein
D Rai3103_02760 YajQ family cyclic di-GMP-binding protein K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
D Rai3103_08040 efflux RND transporter periplasmic adaptor subunit K02005 ABC.CD.TX; HlyD family secretion protein
D Rai3103_06000 AI-2E family transporter K11744 tqsA; AI-2 transport protein TqsA
C 99994 Others
D Rai3103_10190 phoU; phosphate signaling complex protein PhoU K02039 phoU; phosphate transport system protein
D Rai3103_00355 (2Fe-2S)-binding protein K02192 bfd; bacterioferritin-associated ferredoxin
D Rai3103_08300 TerC/Alx family metal homeostasis membrane protein K05794 terC; tellurite resistance protein TerC
D Rai3103_08305 TerC/Alx family metal homeostasis membrane protein K05794 terC; tellurite resistance protein TerC
D Rai3103_10300 copper homeostasis protein CutC K06201 cutC; copper homeostasis protein
D Rai3103_01965 SidA/IucD/PvdA family monooxygenase K07222 K07222; putative flavoprotein involved in K+ transport
D Rai3103_14670 SidA/IucD/PvdA family monooxygenase K07222 K07222; putative flavoprotein involved in K+ transport
B
B 09194 Poorly characterized
C 99996 General function prediction only
D Rai3103_01400 PHP domain-containing protein K04477 ycdX; putative hydrolase
D Rai3103_09495 DEAD/DEAH box helicase K06877 K06877; DEAD/DEAH box helicase domain-containing protein
D Rai3103_00245 globin K06886 glbN; hemoglobin
D Rai3103_00485 oxidoreductase K06886 glbN; hemoglobin
D Rai3103_05615 MMPL family transporter K06994 K06994; putative drug exporter of the RND superfamily
D Rai3103_13875 esterase K07001 K07001; NTE family protein
D Rai3103_00755 esterase K07001 K07001; NTE family protein
D Rai3103_12125 patatin-like phospholipase family protein K07001 K07001; NTE family protein
D Rai3103_16605 sufB; Fe-S cluster assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB
D Rai3103_16600 sufD; Fe-S cluster assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD
D Rai3103_01815 hypothetical protein K07058 K07058; membrane protein
D Rai3103_13325 ribonuclease BN K07058 K07058; membrane protein
D Rai3103_14995 hypothetical protein K07058 K07058; membrane protein
D Rai3103_12150 YihY family inner membrane protein K07058 K07058; membrane protein
D Rai3103_04335 VOC family protein K04750 phnB; PhnB protein
D Rai3103_04770 VOC family protein K04750 phnB; PhnB protein
D Rai3103_09160 LemA family protein K03744 lemA; LemA protein
D Rai3103_14560 DedA family protein K03975 dedA; membrane-associated protein
D Rai3103_09260 alkaline phosphatase K03975 dedA; membrane-associated protein
D Rai3103_05610 hypothetical protein K01421 yhgE; putative membrane protein
D Rai3103_04725 DUF3533 domain-containing protein K01421 yhgE; putative membrane protein
D Rai3103_01555 DUF202 domain-containing protein K00389 yidH; putative membrane protein
D Rai3103_11175 phage holin family protein K08972 K08972; putative membrane protein
D Rai3103_08080 PH domain-containing protein K08981 K08981; putative membrane protein
D Rai3103_06995 hypothetical protein K08982 K08982; putative membrane protein
D Rai3103_14495 hypothetical protein K09858 K09858; SEC-C motif domain protein
C 99997 Function unknown
D Rai3103_06650 ankyrin repeat domain-containing protein K06867 K06867; uncharacterized protein
D Rai3103_10910 DUF255 domain-containing protein K06888 K06888; uncharacterized protein
D Rai3103_16225 RNA-binding protein K06960 K06960; uncharacterized protein
D Rai3103_05460 GNAT family N-acetyltransferase K06975 K06975; uncharacterized protein
D Rai3103_08780 GNAT family N-acetyltransferase K06975 K06975; uncharacterized protein
D Rai3103_16150 GNAT family N-acetyltransferase K06975 K06975; uncharacterized protein
D Rai3103_16410 GNAT family N-acetyltransferase K06976 K06976; uncharacterized protein
D Rai3103_00110 VOC family protein K06996 K06996; uncharacterized protein
D Rai3103_08690 VOC family protein K06996 K06996; uncharacterized protein
D Rai3103_15450 hypothetical protein K07005 K07005; uncharacterized protein
D Rai3103_12930 pyridoxamine 5'-phosphate oxidase family protein K07005 K07005; uncharacterized protein
D Rai3103_16295 pyridoxamine 5'-phosphate oxidase family protein K07005 K07005; uncharacterized protein
D Rai3103_08740 VOC family protein K07032 K07032; uncharacterized protein
D Rai3103_08745 VOC family protein K07032 K07032; uncharacterized protein
D Rai3103_10780 hypothetical protein K07054 K07054; uncharacterized protein
D Rai3103_01800 PIN domain-containing protein K07064 K07064; uncharacterized protein
D Rai3103_08655 TIGR01777 family protein K07071 K07071; uncharacterized protein
D Rai3103_11040 helix-turn-helix domain-containing protein K07075 K07075; uncharacterized protein
D Rai3103_07035 permease K07089 K07089; uncharacterized protein
D Rai3103_06175 TSUP family transporter K07090 K07090; uncharacterized protein
D Rai3103_00205 TSUP family transporter K07090 K07090; uncharacterized protein
D Rai3103_04150 TSUP family transporter K07090 K07090; uncharacterized protein
D Rai3103_16395 TSUP family transporter K07090 K07090; uncharacterized protein
D Rai3103_03230 metallophosphoesterase K07098 K07098; uncharacterized protein
D Rai3103_10795 phosphoribosyltransferase K07101 K07101; uncharacterized protein
D Rai3103_14350 AbrB family transcriptional regulator K07120 K07120; uncharacterized protein
D Rai3103_05575 SDR family NAD(P)-dependent oxidoreductase K07124 K07124; uncharacterized protein
D Rai3103_07130 hypothetical protein K07126 K07126; uncharacterized protein
D Rai3103_05500 MOSC domain-containing protein K07140 K07140; MOSC domain-containing protein
D Rai3103_13520 DUF554 family protein K07150 K07150; uncharacterized protein
D Rai3103_07165 peptidase S16 K07157 K07157; uncharacterized protein
D Rai3103_11350 hypothetical protein K07164 K07164; uncharacterized protein
D Rai3103_06095 yidD; membrane protein insertion efficiency factor YidD K08998 K08998; uncharacterized protein
D Rai3103_15005 bifunctional nuclease family protein K08999 K08999; uncharacterized protein
D Rai3103_10730 DUF501 domain-containing protein K09009 K09009; uncharacterized protein
D Rai3103_09735 GatB/YqeY domain-containing protein K09117 K09117; uncharacterized protein
D Rai3103_13050 UPF0182 family protein K09118 K09118; uncharacterized protein
D Rai3103_06890 amrA; AmmeMemoRadiSam system protein A K09141 K09141; uncharacterized protein
D Rai3103_08620 DUF1684 domain-containing protein K09164 K09164; uncharacterized protein
D Rai3103_08075 PH domain-containing protein K09167 K09167; uncharacterized protein
D Rai3103_14600 DUF309 domain-containing protein K09763 K09763; uncharacterized protein
D Rai3103_05190 DUF808 family protein K09781 K09781; uncharacterized protein
D Rai3103_00970 Trm112 family protein K09791 K09791; uncharacterized protein
D Rai3103_02385 yaaA; peroxide stress protein YaaA K09861 K09861; uncharacterized protein
D Rai3103_03630 winged helix-turn-helix domain-containing protein K09927 K09927; uncharacterized protein
D Rai3103_14385 antibiotic biosynthesis monooxygenase K09932 K09932; uncharacterized protein
D Rai3103_14935 DUF4870 domain-containing protein K09940 K09940; uncharacterized protein
D Rai3103_05275 ACT domain-containing protein K09964 K09964; uncharacterized protein
D Rai3103_04325 DUF2237 family protein K09966 K09966; uncharacterized protein
D Rai3103_05055 DUF1989 domain-containing protein K09967 K09967; uncharacterized protein
D Rai3103_16375 DUF448 domain-containing protein K07742 ylxR; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 28, 2024