+E Transcription factors KO #

  Transcription Factors - Rhodococcus erythropolis PR4

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D RER_03260 putative modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D RER_22910 conserved hypothetical protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D RER_39470 putative modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D RER_59180 putative AraC family transcriptional regulator K14063 feaR; AraC family transcriptional regulator, positive regulator of tynA and feaB D RER_52830 putative AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator D RER_52350 alkA; 3-methyladenine-DNA glycosylase II K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] C LysR family D RER_27880 oxyR; putative oxidative stress response regulatory protein OxyR K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D RER_55810 putative LysR family transcriptional regulator K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D RER_47890 putative LysR family transcriptional regulator K09681 gltC; LysR family transcriptional regulator, transcription activator of glutamate synthase operon D RER_51990 putative LysR family transcriptional regulator K11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator D RER_02990 putative LysR family transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein C DeoR family D RER_27720 putative DeoR family transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor C LacI family D RER_20410 putative LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RER_48480 putative LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RER_52780 putative LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor C GntR family D RER_51240 putative GntR family transcriptional regulator K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D RER_39640 putative GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D RER_25650 putative GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator D RER_pREL1-02210 putative GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator D RER_01500 putative GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D RER_52690 putative GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D RER_58480 putative GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D RER_05310 putative GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase C TetR/AcrR family D RER_34890 putative TetR family transcriptional regulator K18476 tetR; TetR/AcrR family transcriptional regulator, tetracycline repressor protein D RER_43330 putative TetR family transcriptional regulator K18476 tetR; TetR/AcrR family transcriptional regulator, tetracycline repressor protein D RER_53260 putative TetR family transcriptional regulator K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes D RER_37350 putative TetR family transcriptional regulator K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness D RER_57730 putative TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D RER_45740 putative TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D RER_53300 putative TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D RER_60080 putative TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D RER_54020 putative TetR family transcriptional regulator K16138 uidR; TetR/AcrR family transcriptional regulator, repressor for uid operon D RER_45800 putative TetR family transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor D RER_30670 putative TetR family transcriptional regulator K21962 acnR; TetR/AcrR family transcriptional regulator, transcriptional repressor of aconitase D RER_01220 putative TetR family transcriptional regulator K21962 acnR; TetR/AcrR family transcriptional regulator, transcriptional repressor of aconitase D RER_38530 putative TetR family transcriptional regulator K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator D RER_07060 putative TetR family transcriptional regulator K22107 kstR; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator D RER_47160 putative TetR family transcriptional regulator K22107 kstR; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator D RER_47670 putative TetR family transcriptional regulator K22107 kstR; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator D RER_56670 putative TetR family transcriptional regulator K22107 kstR; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator D RER_51040 kstR; putative transcriptional regulator KstR K22107 kstR; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator D RER_08930 putative TetR family transcriptional regulator K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator D RER_00870 putative TetR family transcriptional regulator K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator D RER_03940 putative TetR family transcriptional regulator K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator D RER_15610 putative TetR family transcriptional regulator K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator D RER_57450 putative TetR family transcriptional regulator K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator D RER_pREC1-00740 putative TetR family transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity D RER_17960 putative TetR family transcriptional regulator K24699 mftR; TetR/AcrR family transcriptional regulator, regulator of mycofactocin system D RER_37300 putative TetR family transcriptional regulator K23778 rcdA; TetR/AcrR family transcriptional regulator, regulator of biofilm formation and stress response C Lrp/AsnC family D RER_21090 putative AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein C LuxR family D RER_25570 putative LuxR family transcriptional regulator K21685 ramA; LuxR family transcriptional regulator, regulator of acetate metabolism D RER_50010 putative LuxR family transcriptional regulator K21685 ramA; LuxR family transcriptional regulator, regulator of acetate metabolism D RER_56410 putative LuxR family transcriptional regulator K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein D RER_47330 putative LuxR family transcriptional regulator K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein D RER_52450 putative LuxR family transcriptional regulator K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein D RER_06670 putative LuxR family transcriptional regulator K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein C MarR family D RER_10620 putative MarR family transcriptional regulator K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB D RER_47170 putative MarR family transcriptional regulator K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB D RER_47400 putative MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D RER_45540 putative MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D RER_04950 putative MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D RER_04560 putative MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D RER_31980 putative MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D RER_50220 putative MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D RER_11470 putative MerR family transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D RER_54130 putative MerR family transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D RER_pREL1-00970 putative MerR family transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D RER_43780 putative MerR family transcriptional regulator K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR D RER_55040 putative MerR family transcriptional regulator K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR D RER_13540 hspR; putative heat shock protein HspR K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR D RER_12820 putative MerR family transcriptional regulator K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR C Fur family D RER_37100 putative Fur family transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D RER_04450 putative Fur family transcriptional regulator K22297 furA; Fur family transcriptional regulator, stress-responsive regulator D RER_12240 furA; ferric uptake regulator K22297 furA; Fur family transcriptional regulator, stress-responsive regulator C IclR family D RER_58650 putative IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D RER_52900 pcaR; putative transcriptional regulator PcaR K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein D RER_54240 catR; putative transcriptional regulator CatR K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein C CRP/FNR family D RER_04800 CRP/FNR family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein C Rrf2 family D RER_55420 putative Rrf2 family DNA-binding protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor C ArsR family D RER_35210 arsR; putative arsenic resistance operon repressor ArsR K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D RER_59200 nhr2; nitrile hydratase regulator 2 K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D RER_pREL1-01580 arsR; putative arsenic resistance operon repressor ArsR K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D RER_pREL1-01550 putative ArsR family transcriptional regulator K23988 arsR-arsC; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor / arsenate reductase (thioredoxin) [EC:1.20.4.4] D RER_56500 putative ArsR family transcriptional regulator K21885 cmtR; ArsR family transcriptional regulator, cadmium/lead-responsive transcriptional repressor D RER_51840 putative ArsR family transcriptional regulator K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor D RER_37090 putative ArsR family transcriptional regulator K22298 smtB; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor C XRE family D RER_50320 putative Xre family DNA-binding protein K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator D RER_15700 putative Xre family DNA-binding protein K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator D RER_27410 putative Xre family DNA-binding protein K27043 clgR; XRE family transcriptional regulator, stress-response regulator C PadR family C Other families D RER_28010 ideR; iron-dependent regulator IdeR K26252 dtxR; DtxR family transcriptional regulator, iron-dependent repressor D RER_26410 putative DtxR family transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D RER_31040 putative BlaI family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D RER_21320 birA; biotin protein ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D RER_18190 putative transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D RER_16400 rex; putative redox-sensing transcriptional regulator Rex K01926 rex; redox-sensing transcriptional repressor D RER_43820 conserved hypothetical protein K27097 espR; ESX-1-secreted protein regulator D RER_pREL1-02010 hypothetical protein K07727 K07727; putative transcriptional regulator D RER_48590 putative Xre family DNA-binding protein K07729 K07729; putative transcriptional regulator D RER_11250 putative Xre family DNA-binding protein K07729 K07729; putative transcriptional regulator D RER_45640 putative Xre family DNA-binding protein K07729 K07729; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families B Other transcription factors C BglG family C Others D RER_19280 WhiB family regulatory protein K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D RER_21540 WhiB family regulatory protein K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D RER_04640 WhiB family regulatory protein K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D RER_21900 WhiB family regulatory protein K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D RER_12780 putative WhiB family regulatory protein K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D RER_44750 WhiB family regulatory protein K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D RER_45230 putative WhiB family regulatory protein K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D RER_pREL1-00890 WhiB family regulatory protein K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D RER_56150 putative WhiB family regulatory protein K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D RER_22250 putative WhiB family regulatory protein K18958 whiB7; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D RER_05710 conserved hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D RER_16500 conserved hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D RER_58840 putative CdaR family transcriptional regulator K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein D RER_53050 putative CdaR family transcriptional regulator K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein D RER_05810 putative CdaR family transcriptional regulator K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein D RER_58880 putative CdaR family transcriptional regulator K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein D RER_pREC1-01020 parB; putative plasmid partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D RER_60240 parB; probable chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D RER_06860 conserved hypothetical protein K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D RER_32790 argR; arginine repressor ArgR K03402 argR; transcriptional regulator of arginine metabolism D RER_37410 hrcA; heat-inducible transcriptional repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D RER_52700 hypothetical protein K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] D RER_40080 putative thiamine metabolism protein K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] D RER_46890 hypothetical protein K02616 paaX; phenylacetic acid degradation operon negative regulatory protein D RER_05560 conserved hypothetical protein K02616 paaX; phenylacetic acid degradation operon negative regulatory protein D RER_15320 conserved hypothetical protein K03973 pspC; phage shock protein C D RER_36880 putative SorC family transcriptional regulator K05346 deoR; deoxyribonucleoside regulator D RER_46070 putative SorC family transcriptional regulator K05346 deoR; deoxyribonucleoside regulator D RER_29990 pyrR; bifunctional protein PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D RER_60040 conserved hypothetical protein K07735 algH; putative transcriptional regulator D RER_27780 conserved hypothetical protein K07738 nrdR; transcriptional repressor NrdR D RER_35610 mraZ; conserved hypothetical protein MraZ K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024 #
Classification taken and modified from TRANSFAC 7.0