+E Transcription factors KO
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Transcription Factors - Rhodococcus erythropolis PR4
%
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D RER_03260 putative modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D RER_22910 conserved hypothetical protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D RER_39470 putative modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D RER_59180 putative AraC family transcriptional regulator K14063 feaR; AraC family transcriptional regulator, positive regulator of tynA and feaB
D RER_52830 putative AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator
D RER_52350 alkA; 3-methyladenine-DNA glycosylase II K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
C LysR family
D RER_27880 oxyR; putative oxidative stress response regulatory protein OxyR K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D RER_55810 putative LysR family transcriptional regulator K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D RER_47890 putative LysR family transcriptional regulator K09681 gltC; LysR family transcriptional regulator, transcription activator of glutamate synthase operon
D RER_51990 putative LysR family transcriptional regulator K11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator
D RER_02990 putative LysR family transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
C DeoR family
D RER_27720 putative DeoR family transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
C LacI family
D RER_20410 putative LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RER_48480 putative LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RER_52780 putative LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
C GntR family
D RER_51240 putative GntR family transcriptional regulator K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D RER_39640 putative GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D RER_25650 putative GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D RER_pREL1-02210 putative GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D RER_01500 putative GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D RER_52690 putative GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D RER_58480 putative GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D RER_05310 putative GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
C TetR/AcrR family
D RER_34890 putative TetR family transcriptional regulator K18476 tetR; TetR/AcrR family transcriptional regulator, tetracycline repressor protein
D RER_43330 putative TetR family transcriptional regulator K18476 tetR; TetR/AcrR family transcriptional regulator, tetracycline repressor protein
D RER_53260 putative TetR family transcriptional regulator K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D RER_37350 putative TetR family transcriptional regulator K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness
D RER_57730 putative TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D RER_45740 putative TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D RER_53300 putative TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D RER_60080 putative TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D RER_54020 putative TetR family transcriptional regulator K16138 uidR; TetR/AcrR family transcriptional regulator, repressor for uid operon
D RER_45800 putative TetR family transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor
D RER_30670 putative TetR family transcriptional regulator K21962 acnR; TetR/AcrR family transcriptional regulator, transcriptional repressor of aconitase
D RER_01220 putative TetR family transcriptional regulator K21962 acnR; TetR/AcrR family transcriptional regulator, transcriptional repressor of aconitase
D RER_38530 putative TetR family transcriptional regulator K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D RER_07060 putative TetR family transcriptional regulator K22107 kstR; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D RER_47160 putative TetR family transcriptional regulator K22107 kstR; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D RER_47670 putative TetR family transcriptional regulator K22107 kstR; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D RER_56670 putative TetR family transcriptional regulator K22107 kstR; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D RER_51040 kstR; putative transcriptional regulator KstR K22107 kstR; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D RER_08930 putative TetR family transcriptional regulator K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D RER_00870 putative TetR family transcriptional regulator K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D RER_03940 putative TetR family transcriptional regulator K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D RER_15610 putative TetR family transcriptional regulator K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D RER_57450 putative TetR family transcriptional regulator K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D RER_pREC1-00740 putative TetR family transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
D RER_17960 putative TetR family transcriptional regulator K24699 mftR; TetR/AcrR family transcriptional regulator, regulator of mycofactocin system
D RER_37300 putative TetR family transcriptional regulator K23778 rcdA; TetR/AcrR family transcriptional regulator, regulator of biofilm formation and stress response
C Lrp/AsnC family
D RER_21090 putative AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
C LuxR family
D RER_25570 putative LuxR family transcriptional regulator K21685 ramA; LuxR family transcriptional regulator, regulator of acetate metabolism
D RER_50010 putative LuxR family transcriptional regulator K21685 ramA; LuxR family transcriptional regulator, regulator of acetate metabolism
D RER_56410 putative LuxR family transcriptional regulator K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
D RER_47330 putative LuxR family transcriptional regulator K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
D RER_52450 putative LuxR family transcriptional regulator K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
D RER_06670 putative LuxR family transcriptional regulator K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
C MarR family
D RER_10620 putative MarR family transcriptional regulator K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB
D RER_47170 putative MarR family transcriptional regulator K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB
D RER_47400 putative MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D RER_45540 putative MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D RER_04950 putative MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D RER_04560 putative MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D RER_31980 putative MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D RER_50220 putative MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D RER_11470 putative MerR family transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D RER_54130 putative MerR family transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D RER_pREL1-00970 putative MerR family transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D RER_43780 putative MerR family transcriptional regulator K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
D RER_55040 putative MerR family transcriptional regulator K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
D RER_13540 hspR; putative heat shock protein HspR K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
D RER_12820 putative MerR family transcriptional regulator K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
C Fur family
D RER_37100 putative Fur family transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D RER_04450 putative Fur family transcriptional regulator K22297 furA; Fur family transcriptional regulator, stress-responsive regulator
D RER_12240 furA; ferric uptake regulator K22297 furA; Fur family transcriptional regulator, stress-responsive regulator
C IclR family
D RER_58650 putative IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D RER_52900 pcaR; putative transcriptional regulator PcaR K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D RER_54240 catR; putative transcriptional regulator CatR K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
C CRP/FNR family
D RER_04800 CRP/FNR family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
C Rrf2 family
D RER_55420 putative Rrf2 family DNA-binding protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
D RER_35210 arsR; putative arsenic resistance operon repressor ArsR K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D RER_59200 nhr2; nitrile hydratase regulator 2 K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D RER_pREL1-01580 arsR; putative arsenic resistance operon repressor ArsR K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D RER_pREL1-01550 putative ArsR family transcriptional regulator K23988 arsR-arsC; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor / arsenate reductase (thioredoxin) [EC:1.20.4.4]
D RER_56500 putative ArsR family transcriptional regulator K21885 cmtR; ArsR family transcriptional regulator, cadmium/lead-responsive transcriptional repressor
D RER_51840 putative ArsR family transcriptional regulator K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
D RER_37090 putative ArsR family transcriptional regulator K22298 smtB; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor
C XRE family
D RER_50320 putative Xre family DNA-binding protein K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator
D RER_15700 putative Xre family DNA-binding protein K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator
D RER_27410 putative Xre family DNA-binding protein K27043 clgR; XRE family transcriptional regulator, stress-response regulator
C PadR family
C Other families
D RER_28010 ideR; iron-dependent regulator IdeR K26252 dtxR; DtxR family transcriptional regulator, iron-dependent repressor
D RER_26410 putative DtxR family transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D RER_31040 putative BlaI family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D RER_21320 birA; biotin protein ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D RER_18190 putative transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D RER_16400 rex; putative redox-sensing transcriptional regulator Rex K01926 rex; redox-sensing transcriptional repressor
D RER_43820 conserved hypothetical protein K27097 espR; ESX-1-secreted protein regulator
D RER_pREL1-02010 hypothetical protein K07727 K07727; putative transcriptional regulator
D RER_48590 putative Xre family DNA-binding protein K07729 K07729; putative transcriptional regulator
D RER_11250 putative Xre family DNA-binding protein K07729 K07729; putative transcriptional regulator
D RER_45640 putative Xre family DNA-binding protein K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
B Other transcription factors
C BglG family
C Others
D RER_19280 WhiB family regulatory protein K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D RER_21540 WhiB family regulatory protein K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D RER_04640 WhiB family regulatory protein K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D RER_21900 WhiB family regulatory protein K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D RER_12780 putative WhiB family regulatory protein K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D RER_44750 WhiB family regulatory protein K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D RER_45230 putative WhiB family regulatory protein K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D RER_pREL1-00890 WhiB family regulatory protein K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D RER_56150 putative WhiB family regulatory protein K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D RER_22250 putative WhiB family regulatory protein K18958 whiB7; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D RER_05710 conserved hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D RER_16500 conserved hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D RER_58840 putative CdaR family transcriptional regulator K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D RER_53050 putative CdaR family transcriptional regulator K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D RER_05810 putative CdaR family transcriptional regulator K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D RER_58880 putative CdaR family transcriptional regulator K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D RER_pREC1-01020 parB; putative plasmid partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RER_60240 parB; probable chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RER_06860 conserved hypothetical protein K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D RER_32790 argR; arginine repressor ArgR K03402 argR; transcriptional regulator of arginine metabolism
D RER_37410 hrcA; heat-inducible transcriptional repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D RER_52700 hypothetical protein K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D RER_40080 putative thiamine metabolism protein K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D RER_46890 hypothetical protein K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D RER_05560 conserved hypothetical protein K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D RER_15320 conserved hypothetical protein K03973 pspC; phage shock protein C
D RER_36880 putative SorC family transcriptional regulator K05346 deoR; deoxyribonucleoside regulator
D RER_46070 putative SorC family transcriptional regulator K05346 deoR; deoxyribonucleoside regulator
D RER_29990 pyrR; bifunctional protein PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D RER_60040 conserved hypothetical protein K07735 algH; putative transcriptional regulator
D RER_27780 conserved hypothetical protein K07738 nrdR; transcriptional repressor NrdR
D RER_35610 mraZ; conserved hypothetical protein MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0