+F Repair protein KO #

  DNA Repair and Recombination Proteins - Raoultella ornithinolytica S12

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D TE10_15920 hypothetical protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D TE10_09415 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E TE10_21390 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E TE10_23890 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E TE10_16115 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D TE10_06265 nucleoside triphosphate hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D TE10_01605 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D TE10_15920 hypothetical protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D TE10_20040 6-O-methylguanine DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D TE10_01910 XRE family transcriptional regulator K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D TE10_09415 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D TE10_20035 alpha-ketoglutarate-dependent dioxygenase K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E TE10_21390 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E TE10_24385 formamidopyrimidine-DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E TE10_19340 3-methyladenine DNA glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E TE10_23890 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E TE10_01170 3-methyladenine DNA glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E TE10_01580 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E TE10_09450 endonuclease VIII K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E TE10_16115 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E TE10_12225 hypothetical protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E TE10_19840 endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E TE10_03520 endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E TE10_23515 ssDNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E TE10_01640 ligB; NAD-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E TE10_20750 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E TE10_02490 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E TE10_03815 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E TE10_09750 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E TE10_18595 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E TE10_12260 nucleotide excision repair endonuclease K05984 cho; excinuclease Cho [EC:3.1.25.-] E TE10_03160 uvrD; DNA-dependent helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E TE10_02490 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E TE10_01640 ligB; NAD-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E TE10_20750 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F TE10_03445 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F TE10_03450 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F TE10_00085 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F TE10_01650 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F TE10_11460 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E TE10_22360 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E TE10_04370 DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor E TE10_22900 DNA mismatch repair protein K03573 mutH; DNA mismatch repair protein MutH D DNA exonucleases E TE10_19105 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E TE10_21050 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E TE10_07630 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] E TE10_18315 exodeoxyribonuclease X K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-] D DNA polymerase III holoenzyme E TE10_06730 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E TE10_02210 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E TE10_04805 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E TE10_09175 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E TE10_11380 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E TE10_06890 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E TE10_08000 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] E TE10_05650 DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] E TE10_18310 DNA polymerase III subunit theta K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D DNA ligase E TE10_01640 ligB; NAD-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E TE10_20750 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E TE10_03160 uvrD; DNA-dependent helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E TE10_03820 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E TE10_00390 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E TE10_18675 very short patch repair endonuclease K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E TE10_22840 recB; exonuclease V subunit beta K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E TE10_22850 recC; exonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E TE10_22835 recD; exonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E TE10_22005 recA; recombinase A K03553 recA; recombination protein RecA E TE10_18415 ruvA; ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E TE10_18410 ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E TE10_18420 ruvC; Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E TE10_02795 primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E TE10_04460 primosomal replication protein N K02686 priB; primosomal replication protein N E TE10_07985 primosomal replication protein N'' K04067 priC; primosomal replication protein N'' E TE10_05570 primosomal protein DnaI K02317 dnaT; DNA replication protein DnaT E TE10_19105 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E TE10_07450 exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E TE10_07455 exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E TE10_22005 recA; recombinase A K03553 recA; recombination protein RecA E TE10_05720 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E TE10_02205 recF; recombination protein F K03629 recF; DNA replication and repair protein RecF E TE10_01665 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E TE10_23515 ssDNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E TE10_21305 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E TE10_08010 recR; recombination protein RecR K06187 recR; recombination protein RecR E TE10_21565 recombination and repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) E TE10_07440 recombination associated protein K03554 rdgC; recombination associated protein RdgC E TE10_18415 ruvA; ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E TE10_18410 ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E TE10_18420 ruvC; Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E TE10_22450 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 E TE10_19940 hypothetical protein K19789 radD; DNA repair protein RadD D Archaeal homologous recombinant proteins E TE10_07450 exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E TE10_07455 exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 E TE10_04825 hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F TE10_20070 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F TE10_02200 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F TE10_12530 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F TE10_03530 DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha F TE10_07760 transcriptional regulator HU subunit alpha K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F TE10_16580 hypothetical protein K10906 recE; exodeoxyribonuclease VIII [EC:3.1.11.-] F TE10_16585 hypothetical protein K07455 recT; recombination protein RecT F TE10_23515 ssDNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F TE10_21305 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F TE10_08010 recR; recombination protein RecR K06187 recR; recombination protein RecR F TE10_01640 ligB; NAD-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] F TE10_20750 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F TE10_25305 fis; Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F TE10_17360 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F TE10_10425 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F TE10_19105 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F TE10_03190 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F TE10_03815 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F TE10_09750 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B F TE10_17485 transcriptional regulator K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D TE10_06970 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D TE10_16290 DNA polymerase V subunit UmuC K03502 umuC; DNA polymerase V D TE10_12800 DNA polymerase V subunit UmuC K03502 umuC; DNA polymerase V D TE10_12795 DNA polymerase V subunit UmuD K03503 umuD; DNA polymerase V [EC:3.4.21.-] D TE10_16295 DNA polymerase V subunit UmuD K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D TE10_22005 recA; recombinase A K03553 recA; recombination protein RecA D TE10_03750 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D TE10_21565 recombination and repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) D TE10_06075 DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7] D TE10_03820 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D TE10_11265 XRE family transcriptional regulator K12149 dinI; DNA-damage-inducible protein I D TE10_16490 XRE family transcriptional regulator K12149 dinI; DNA-damage-inducible protein I D TE10_22000 recX; recombination regulator RecX K03565 recX; regulatory protein D TE10_05410 hypothetical protein K24087 rpnB; recombination-promoting nuclease RpnB [EC:3.1.21.-] B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D TE10_03005 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D TE10_10635 helD; DNA helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4] D TE10_18135 ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D TE10_09855 dinG; ATP-dependent DNA helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D TE10_06265 nucleoside triphosphate hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D TE10_01605 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D TE10_21890 hypothetical protein K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D TE10_20080 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D TE10_21895 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D TE10_20085 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024