+E Transcription factors KO
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Transcription Factors - Ralstonia solanacearum PSI07
%
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D RPSI07_0012 putative DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D RPSI07_3249 transcriptional regulator K13652 K13652; AraC family transcriptional regulator
D RPSI07_mp1282 putative transcription regulator protein K13652 K13652; AraC family transcriptional regulator
D RPSI07_mp1188 putative transcription regulator, AraC family K07506 K07506; AraC family transcriptional regulator
D RPSI07_2643 putative AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D RPSI07_0897 ada; fused DNA-binding transcriptional dual regulator; O6-methylguanine-DNA methyltransferase; (AraC/Xyl family) (N-terminal); bifunctional K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D RPSI07_0961 Putative regulatory protein ada (Regulatory protein of adaptative response) [Includes: Methylated-DNA--protein-cysteine methyltransferase (O-6-methylguanine-DNA alkyltransferase)] K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
C LysR family
D RPSI07_3085 gcvA; transcriptional regulator of Glycine cleavage system operon, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D RPSI07_0748 gcvA; transcriptional regulator of glycine cleavage system operon, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D RPSI07_mp0892 putative glycine cleavage system transcriptional activator (gcvA) K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D RPSI07_1592 putative glycine cleavage system transcriptional activator (Gcv operon activator)(gcvA), LysR family domain K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D RPSI07_mp0578 metR; transcriptional regulator of methionine biosynthesis (LysR family) K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D RPSI07_0821 oxyR; Hydrogen peroxide-inducible gene activator; Transcriptional regulator, LysR family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D RPSI07_mp0867 iciA; Chromosome initiation inhibitor (OriC replication inhibitor) K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D RPSI07_1047 cysB; transcriptional regulator of biosynthesis of L-cysteine and regulator of sulfur assimilation (LysR family) K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D RPSI07_2019 cbl; transcriptional regulator of cysteine biosynthesis and aliphatic sulfonates utilization; LysR family K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator
D RPSI07_mp0991 putative transcription regulator; putative ttuA activator K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D RPSI07_1525 putative transcriptional regulator (LysR family) K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D RPSI07_mp1414 Transcriptional regulator, LysR family K16516 galR; LysR family transcriptional regulator, regulator for genes of the gallate degradation pathway
D RPSI07_mp1151 putative transcription regulator protein, LysR family K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D RPSI07_mp0636 nac; nitrogen assimilation transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D RPSI07_0762 phcA; transcriptional regulator, LysR family K19624 phcA; LysR family transcriptional regulator, virulence genes transcriptional regulator
D RPSI07_2889 putative TRANSCRIPTIONal REGULATOR, lysR family K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D RPSI07_1891 benM; HTH-type transcriptional regulator benM (Ben and cat operon transcriptional regulator, LysR family) K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes
C DeoR family
D RPSI07_0452 glpR; Glycerol-3-phosphate regulon repressor, DeoR family K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
C LacI family
D RPSI07_2381 rbsR; ribose operon transcriptional repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RPSI07_mp0175 putative transcriptional regulator protein, LacI-family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RPSI07_2125 hypothethical protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RPSI07_mp1743 putative transcription regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RPSI07_0646 putative transcription regulation repressor (fruR), LacI family K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D RPSI07_mp1103 scrR; dna-binding sucrose operon transcriptional repressor transcription regulator protein K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D RPSI07_mp1721 putative transcription regulator transcription regulator protein K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
C GntR family
D RPSI07_0869 hutC; histidine utilization repressor, transcription regulator GntR K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D RPSI07_mp1521 putative transcriptional regulator, GntR, HTH, UbiC domains K03710 K03710; GntR family transcriptional regulator
D RPSI07_mp0309 putative transcription regulator protein, GntR family K03710 K03710; GntR family transcriptional regulator
D RPSI07_1432 putative transcription regulator; GntR family K03710 K03710; GntR family transcriptional regulator
D RPSI07_mp0063 putative HTH-type transcriptional regulator, GntR family K03710 K03710; GntR family transcriptional regulator
D RPSI07_mp0964 Transcriptional regulator, GntR family K03710 K03710; GntR family transcriptional regulator
D RPSI07_2313 putative transcriptional regulatory dna-binding transcription regulator protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D RPSI07_0369 putative transcription regulator, GntR family, aminotransferase domain K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D RPSI07_3349 putative transcriptional regulator, DNA-binding HTH domain (GntR) and aminotransferase domain (MocR family) K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
C TetR/AcrR family
D RPSI07_3368 acrR; transcriptional repressor for acridine efflux pump ACRAB, multidrug efflux system repressor (TetR/AcrR family) K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D RPSI07_3348 putative transcriptional regulator of dUTPase subunit (TetR/AcrR family); similar to E.coli ttk K05501 slmA; TetR/AcrR family transcriptional regulator
D RPSI07_2144 putative HTH-type transcriptional regulator, TetR-like (rutR) K09017 rutR; TetR/AcrR family transcriptional regulator
D RPSI07_2176 putative transcription regulator protein, TetR-related K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D RPSI07_mp0899 putative transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D RPSI07_mp0900 Transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
C Lrp/AsnC family
D RPSI07_2457 lrp; leucine-binding transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D RPSI07_0385 transcriptional regulator, AsnC/Lrp family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D RPSI07_3253 putative transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D RPSI07_1324 putative transcription regulator protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D RPSI07_0706 putative transcription regulator protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D RPSI07_0091 putative transcriptional regulator, AsnC/Lrp family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D RPSI07_2579 Irp; transcriptional regulator, AsnC/Lrp family (Leucine-responsive regulatory protein) K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D RPSI07_0413 lrp; Leucine-responsive regulatory protein K26601 azlB; Lrp/AsnC family transcriptional regulator, repressor for azl operon
C LuxR family
D RPSI07_0159 solR; Transcriptional activator protein solR K19666 solR; LuxR family transcriptional regulator, quorum-sensing system regulator SolR
C MarR family
D RPSI07_mp1752 Transcriptional regulator, MarR family K22489 hosA; MarR family transcriptional regulator, temperature-dependent positive regulator of motility
D RPSI07_mp0342 ohrR; Organic hydroperoxide resistance transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D RPSI07_mp1147 ohrR; Organic hydroperoxide resistance transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D RPSI07_0097 hmrR; Heavy metal-dependent transcription regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
C Fur family
D RPSI07_0763 fur; transcriptional repressor of iron transport (Fur family) K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D RPSI07_3330 putative transcriptional regulator, FUR family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D RPSI07_mp0213 fur; Ferric uptake regulation protein (Ferric uptake regulator) K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
C IclR family
D RPSI07_0404 pcaR; Pca regulon regulatory protein (activator) K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D RPSI07_1167 putative transcription regulator protein, IclR family K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D RPSI07_0030 transcription regulator protein, IclR family K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
C CRP/FNR family
D RPSI07_mp0740 putative transcription regulator protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D RPSI07_1550 transcription regulator protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D RPSI07_2082 fnr; O2-sensitive transcriptional regulator of ccoNOQP operon K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D RPSI07_mp1516 putative transcription regulator protein, Crp/Fnr family K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator
C Rrf2 family
D RPSI07_2377 iscR; DNA-binding transcriptional repressor; iron-sulfur cluster assembly transcription factor K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D RPSI07_0043 nsrR; HTH-type transcriptional regulator nsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
D RPSI07_mp0921 arsR; Arsenical resistance transcriptional regulator, arsR K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
C XRE family
C PadR family
C Other families
D RPSI07_mp1660 putative transcriptional regulator, hexR K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D RPSI07_3098 birA; bifunctional protein: biotin operon repressor and biotin-[acetyl-coA-carboxylase] synthetase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D RPSI07_2859 putative transcriptional regulator, FIS family K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D RPSI07_mp0088 putative propionate catabolism operon regulatory transcription regulator (prpR) K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein
D RPSI07_mp1287 hipB; DNA-binding transcriptional regulator K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D RPSI07_1921 putative transcription regulator protein (hipB) K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D RPSI07_mp1183 modE; transcriptional repressor for molybdate uptake K02019 modE; molybdate transport system regulatory protein
B Ribbon-helix-helix
C CopG family
C Other families
D RPSI07_0142 putA; multifunctional: transcriptional repressor of proline utilization; proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D RPSI07_1786 Putative transcription regulator, bolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D RPSI07_0119 parB; chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RPSI07_mp0005 parB; plasmid partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RPSI07_0868 hrcA; Heat-inducible transcription repressor, negative regulator of class I heat shock protein K03705 hrcA; heat-inducible transcriptional repressor
D RPSI07_0881 rnk; regulator of nucleoside diphosphate kinase K06140 rnk; regulator of nucleoside diphosphate kinase
D RPSI07_2674 pyrR; PyrR bifunctional protein: Pyrimidine operon regulatory protein; Uracil phosphoribosyltransferase (UPRTase)] K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D RPSI07_0980 putative phage transcriptional regulator K07733 alpA; prophage regulatory protein
D RPSI07_mp0592 putative transcriptional regulator; repressor, FMN-binding protein K07734 paiB; transcriptional regulator
D RPSI07_2676 conserved protein of unknown function, hypothetical UPF0301 protein, DUF179 domain K07735 algH; putative transcriptional regulator
D RPSI07_3332 dskA; dnak suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D RPSI07_1547 putative dnak suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D RPSI07_2610 nrdR; Transcriptional repressor nrdR K07738 nrdR; transcriptional repressor NrdR
D RPSI07_3189 rtcR; sigma 54-dependent transcriptional regulator of rtcBA expression K14414 rtcR; transcriptional regulatory protein RtcR
D RPSI07_mp0997 xpsR; transcription regulator xpsr K19667 xpsR; transcriptional activator of eps genes
D RPSI07_0654 mraZ; Protein mraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0