+E Transcription factors KO
#
Transcription Factors - Salmonella enterica subsp. arizonae
%
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D SARI_03133 hypothetical protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D SARI_00944 hypothetical protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C GRAS
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D SARI_02901 hypothetical protein K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D SARI_01892 hypothetical protein K02508 hpaA; AraC family transcriptional regulator, 4-hydroxyphenylacetate 3-monooxygenase operon regulatory protein
D SARI_03597 hypothetical protein K02854 rhaR; AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR
D SARI_03598 hypothetical protein K02855 rhaS; AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS
D SARI_01663 hypothetical protein K03490 chbR; AraC family transcriptional regulator, dual regulator of chb operon
D SARI_02172 hypothetical protein K03490 chbR; AraC family transcriptional regulator, dual regulator of chb operon
D SARI_03362 hypothetical protein K03755 adiY; AraC family transcriptional regulator, transcriptional activator of adiA
D SARI_00430 hypothetical protein K04033 eutR; AraC family transcriptional regulator, ethanolamine operon transcriptional activator
D SARI_03412 hypothetical protein K13631 soxS; AraC family transcriptional regulator, mar-sox-rob regulon activator
D SARI_01456 hypothetical protein K13632 marA; AraC family transcriptional regulator, mar-sox-rob regulon activator
D SARI_02997 hypothetical protein K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D SARI_02356 hypothetical protein K18325 ramA; AraC family of transcriptional regulator, multidrug resistance transcriptional activator
D SARI_02376 hypothetical protein K21746 rclR; AraC family transcriptional regulator, reactive chlorine species (RCS)-specific activator of rcl operon
D SARI_03360 hypothetical protein K23237 melR; AraC family transcriptional regulator, melibiose operon regulatory protein
D SARI_01700 hypothetical protein K25495 nimR; AraC family transcriptional regulator, regulator of nimT
D SARI_00851 hypothetical protein K27259 pocR; AraC family transcriptional regulator, pdu and cob operon regulator
D SARI_00624 hypothetical protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
C LysR family
D SARI_04680 hypothetical protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D SARI_03746 hypothetical protein K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D SARI_03693 hypothetical protein K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D SARI_02951 hypothetical protein K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D SARI_03539 hypothetical protein K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D SARI_04586 hypothetical protein K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D SARI_02888 hypothetical protein K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon
D SARI_04374 hypothetical protein K07592 tdcA; LysR family transcriptional regulator, tdc operon transcriptional activator
D SARI_01247 hypothetical protein K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D SARI_04165 hypothetical protein K13928 mdcR; LysR family transcriptional regulator, malonate utilization transcriptional regulator
D SARI_01478 hypothetical protein K19555 spvR; LysR family transcriptional regulator, spv operon transcriptional activator
D SARI_03064 hypothetical protein K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D SARI_04266 hypothetical protein K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon
D SARI_03754 hypothetical protein K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
C DeoR family
D SARI_02066 hypothetical protein K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor
D SARI_03855 hypothetical protein K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor
D SARI_04098 hypothetical protein K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D SARI_04365 hypothetical protein K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
D SARI_01157 hypothetical protein K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
D SARI_04683 hypothetical protein K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator
D SARI_00134 hypothetical protein K02468 srlR; DeoR family transcriptional regulator, glucitol operon repressor
D SARI_03253 hypothetical protein K03477 ulaR; DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor
D SARI_03641 hypothetical protein K27243 csqR; DeoR family transcriptional regulator, sulfoquinovose operon repressor
C LacI family
D SARI_02833 hypothetical protein K27069 lacI; LacI family transcriptional regulator, lactose operon repressor
D SARI_03974 hypothetical protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D SARI_01416 hypothetical protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D SARI_04646 hypothetical protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D SARI_00701 hypothetical protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D SARI_03763 hypothetical protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D SARI_03562 hypothetical protein K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D SARI_02884 hypothetical protein K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D SARI_03195 hypothetical protein K03485 treR; LacI family transcriptional regulator, trehalose operon repressor
D SARI_01552 hypothetical protein K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D SARI_03945 hypothetical protein K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D SARI_04086 hypothetical protein K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D SARI_03161 hypothetical protein K06146 idnR; LacI family transcriptional regulator, gluconate utilization system Gnt-II transcriptional activator
D SARI_01513 hypothetical protein K16136 malI; LacI family transcriptional regulator, maltose regulon regulatory protein
C GntR family
D SARI_02137 hypothetical protein K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D SARI_04034 hypothetical protein K03710 K03710; GntR family transcriptional regulator
D SARI_01134 hypothetical protein K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D SARI_02843 hypothetical protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D SARI_03069 hypothetical protein K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor
D SARI_03949 hypothetical protein K14348 lldR; GntR family transcriptional regulator, L-lactate dehydrogenase operon regulator
D SARI_04284 hypothetical protein K22104 nanR; GntR family transcriptional regulator, sialic acid-inducible nan operon repressor
D SARI_01390 hypothetical protein K13654 mcbR; GntR family transcriptional regulator, colanic acid and biofilm gene transcriptional regulator
D SARI_00179 hypothetical protein K15735 csiR; GntR family transcriptional regulator, carbon starvation induced regulator
D SARI_01447 hypothetical protein K22293 rspR; GntR family transcriptional regulator, rspAB operon transcriptional repressor
C TetR/AcrR family
D SARI_02457 hypothetical protein K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D SARI_03909 hypothetical protein K05501 slmA; TetR/AcrR family transcriptional regulator
D SARI_01880 hypothetical protein K09017 rutR; TetR/AcrR family transcriptional regulator
D SARI_01544 hypothetical protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D SARI_04240 hypothetical protein K18140 envR; TetR/AcrR family transcriptional regulator, acrEF/envCD operon repressor
D SARI_01778 hypothetical protein K22041 comR; TetR/AcrR family transcriptional regulator, copper-responsive repressor
D SARI_03536 hypothetical protein K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D SARI_02108 hypothetical protein K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
C Lrp/AsnC family
D SARI_03774 hypothetical protein K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D SARI_02005 hypothetical protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D SARI_02476 hypothetical protein K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
D SARI_00987 hypothetical protein K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA
D SARI_00955 hypothetical protein K07781 rcsA; LuxR family transcriptional regulator, capsular biosynthesis positive transcription factor
D SARI_03031 hypothetical protein K22650 bglJ; LuxR family transcriptional regulator, regulator of transport and utilization of aryl beta-glucosides
D SARI_04099 hypothetical protein K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
C MarR family
D SARI_01457 hypothetical protein K03712 marR; MarR family transcriptional regulator, multiple antibiotic resistance protein MarR
D SARI_01538 hypothetical protein K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D SARI_00160 hypothetical protein K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB
D SARI_00037 hypothetical protein K22489 hosA; MarR family transcriptional regulator, temperature-dependent positive regulator of motility
C MerR family
D SARI_02434 hypothetical protein K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D SARI_04216 hypothetical protein K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
D SARI_03411 hypothetical protein K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
D SARI_00738 hypothetical protein K21089 mlrA; MerR family transcriptional regulator, activator of the csg genes
C Fur family
D SARI_02249 hypothetical protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D SARI_03438 hypothetical protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
D SARI_03469 hypothetical protein K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D SARI_01099 hypothetical protein K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
C CRP/FNR family
D SARI_04149 hypothetical protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D SARI_03743 hypothetical protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D SARI_01322 hypothetical protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D SARI_00682 hypothetical protein K16326 yeiL; CRP/FNR family transcriptional regulator, putaive post-exponential-phase nitrogen-starvation regulator
C Rrf2 family
D SARI_00332 hypothetical protein K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D SARI_03264 hypothetical protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
C XRE family
D SARI_01373 hypothetical protein K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
C PadR family
C Other families
D SARI_02089 hypothetical protein K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D SARI_00442 hypothetical protein K15835 murR; RpiR family transcriptional regulator, murPQ operon repressor
D SARI_01059 hypothetical protein K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D SARI_03524 hypothetical protein K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D SARI_04245 hypothetical protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D SARI_03000 hypothetical protein K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D SARI_02558 hypothetical protein K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein
D SARI_04319 hypothetical protein K07724 ner; Ner family transcriptional regulator
D SARI_03131 hypothetical protein K07724 ner; Ner family transcriptional regulator
D SARI_03317 hypothetical protein K07724 ner; Ner family transcriptional regulator
D SARI_04522 hypothetical protein K07724 ner; Ner family transcriptional regulator
D SARI_02896 hypothetical protein K11925 sgrR; SgrR family transcriptional regulator
D SARI_03003 hypothetical protein K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D SARI_03045 hypothetical protein K19505 gfrR; sigma-54 dependent transcriptional regulator, gfr operon transcriptional activator
D SARI_00132 hypothetical protein K12266 norR; anaerobic nitric oxide reductase transcription regulator
D SARI_00113 hypothetical protein K15836 fhlA; formate hydrogenlyase transcriptional activator
D SARI_02794 hypothetical protein K02647 cdaR; carbohydrate diacid regulator
D SARI_00388 hypothetical protein K02647 cdaR; carbohydrate diacid regulator
D SARI_00538 hypothetical protein K06714 rocR; arginine utilization regulatory protein
D SARI_02163 hypothetical protein K02019 modE; molybdate transport system regulatory protein
D SARI_03991 hypothetical protein K07726 K07726; putative transcriptional regulator
D SARI_03092 hypothetical protein K07726 K07726; putative transcriptional regulator
D SARI_03634 hypothetical protein K07726 K07726; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
D SARI_04052 hypothetical protein K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
C Other families
D SARI_03557 hypothetical protein K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D SARI_01878 hypothetical protein K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D SARI_03204 hypothetical protein K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
B Other transcription factors
C BglG family
C Others
D SARI_01355 hypothetical protein K23239 frmR; FrmR/RcnR family transcriptional regulator, repressor of frmRAB operon
D SARI_04630 hypothetical protein K23240 rcnR; FrmR/RcnR family transcriptional regulator, repressor of rcnA expression
D SARI_02488 hypothetical protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D SARI_03680 hypothetical protein K05785 rfaH; transcriptional antiterminator RfaH
D SARI_04273 hypothetical protein K03402 argR; transcriptional regulator of arginine metabolism
D SARI_02259 hypothetical protein K02565 nagC; N-acetylglucosamine repressor
D SARI_01490 hypothetical protein K15545 mlc; transcriptional regulator of PTS gene
D SARI_03953 hypothetical protein K02562 mtlR; mannitol operon repressor
D SARI_01298 hypothetical protein K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D SARI_00319 hypothetical protein K03765 cadC; transcriptional activator of cad operon
D SARI_00097 hypothetical protein K22486 hilA; transcriptional regulator HilA, main transcriptional regulator of SPI1
D SARI_00392 hypothetical protein K03567 gcvR; glycine cleavage system transcriptional repressor
D SARI_01279 hypothetical protein K03974 pspF; psp operon transcriptional activator
D SARI_01282 hypothetical protein K03973 pspC; phage shock protein C
D SARI_02319 hypothetical protein K06140 rnk; regulator of nucleoside diphosphate kinase
D SARI_00214 hypothetical protein K07733 alpA; prophage regulatory protein
D SARI_03879 hypothetical protein K07733 alpA; prophage regulatory protein
D SARI_00926 hypothetical protein K07733 alpA; prophage regulatory protein
D SARI_04549 hypothetical protein K07735 algH; putative transcriptional regulator
D SARI_02936 hypothetical protein K08277 caiF; transcriptional activator CaiF
D SARI_02811 hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor
D SARI_02511 hypothetical protein K07738 nrdR; transcriptional repressor NrdR
D SARI_02693 hypothetical protein K11926 crl; sigma factor-binding protein Crl
D SARI_02883 hypothetical protein K03925 mraZ; transcriptional regulator MraZ
!
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 29, 2024
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Classification taken and modified from TRANSFAC 7.0