+D GENES KO #

  KEGG Orthology (KO) - Streptococcus iniae ISET0901

% ! A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:siq00010] D DQ08_02695 glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D DQ08_09430 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D DQ08_04235 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D DQ08_06155 fructose 1,6-bisphosphatase K04041 fbp3; fructose-1,6-bisphosphatase III [EC:3.1.3.11] D DQ08_01980 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D DQ08_06205 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D DQ08_09015 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D DQ08_09000 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D DQ08_02885 phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D DQ08_05960 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D DQ08_04240 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D DQ08_08310 pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D DQ08_03770 pyruvate dehydrogenase K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D DQ08_03775 pyruvate dehydrogenase K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D DQ08_03780 iron ABC transporter ATP-binding protein K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D DQ08_03785 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DQ08_01165 pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D DQ08_05580 L-2-hydroxyisocaproate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D DQ08_04890 lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D DQ08_00360 acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D DQ08_01095 aldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D DQ08_00605 adhP; ethanol-active dehydrogenase/acetaldehyde-active reductase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D DQ08_04530 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D DQ08_03145 glyceraldehyde-3-phosphate dehydrogenase K00131 gapN; glyceraldehyde-3-phosphate dehydrogenase (NADP+) [EC:1.2.1.9] D DQ08_01830 phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D DQ08_01610 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D DQ08_05080 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D DQ08_05095 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D DQ08_06545 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] C 00020 Citrate cycle (TCA cycle) [PATH:siq00020] D DQ08_03785 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DQ08_01830 phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D DQ08_03770 pyruvate dehydrogenase K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D DQ08_03775 pyruvate dehydrogenase K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D DQ08_03780 iron ABC transporter ATP-binding protein K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D DQ08_01165 pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] C 00030 Pentose phosphate pathway [PATH:siq00030] D DQ08_09430 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D DQ08_03705 carboxy-cis,cis-muconate cyclase K07404 pgl; 6-phosphogluconolactonase [EC:3.1.1.31] D DQ08_09060 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D DQ08_09810 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D DQ08_09815 carbohydrate degradation protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D DQ08_07910 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D DQ08_07915 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] D DQ08_00930 fructose-6-phosphate aldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] D DQ08_03980 ribose 5-phosphate isomerase K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D DQ08_04495 deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D DQ08_02635 ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15] D DQ08_03985 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7] D DQ08_04530 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D DQ08_05040 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D DQ08_00240 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D DQ08_03220 2-dehydro-3-deoxyphosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D DQ08_00990 keto-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D DQ08_03145 glyceraldehyde-3-phosphate dehydrogenase K00131 gapN; glyceraldehyde-3-phosphate dehydrogenase (NADP+) [EC:1.2.1.9] D DQ08_00995 2-keto-3-deoxygluconate kinase K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45] D DQ08_03210 2-dehydro-3-deoxygluconokinase K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45] D DQ08_01980 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D DQ08_06155 fructose 1,6-bisphosphatase K04041 fbp3; fructose-1,6-bisphosphatase III [EC:3.1.3.11] D DQ08_04235 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] C 00040 Pentose and glucuronate interconversions [PATH:siq00040] D DQ08_03225 glucuronate isomerase K01812 uxaC; glucuronate isomerase [EC:5.3.1.12] D DQ08_03230 mannonate dehydratase K01686 uxuA; mannonate dehydratase [EC:4.2.1.8] D DQ08_09410 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D DQ08_04090 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D DQ08_09385 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D DQ08_09570 carbohydrate kinase K00880 lyxK; L-xylulokinase [EC:2.7.1.53] D DQ08_09610 ulaD; 3-keto-L-gulonate-6-phosphate decarboxylase K03078 ulaD; 3-dehydro-L-gulonate-6-phosphate decarboxylase [EC:4.1.1.85] D DQ08_09605 xylulose 5-phosphate 3-epimerase K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22] D DQ08_09600 araD; ribulose 5-phosphate epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4] D DQ08_09060 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] C 00051 Fructose and mannose metabolism [PATH:siq00051] D DQ08_08465 fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D DQ08_08460 mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D DQ08_04235 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D DQ08_06155 fructose 1,6-bisphosphatase K04041 fbp3; fructose-1,6-bisphosphatase III [EC:3.1.3.11] D DQ08_04270 mannitol-1-phosphate 5-dehydrogenase K00009 mtlD; mannitol-1-phosphate 5-dehydrogenase [EC:1.1.1.17] D DQ08_05415 phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] D DQ08_01980 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D DQ08_06205 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D DQ08_05410 PTS fructose transporter subunit IIC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D DQ08_00310 PTS fructose transporter subunit IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D DQ08_08140 PTS system mannost-specific transporter subunits IIAB K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191] D DQ08_08145 PTS mannose transporter subunit IIC K02795 manY; mannose PTS system EIIC component D DQ08_00300 PTS fructose transporter subunit IIC K02795 manY; mannose PTS system EIIC component D DQ08_08150 PTS system mannose family transporter subunit IID K02796 manZ; mannose PTS system EIID component D DQ08_00305 PTS fructose transporter subunit IID K02796 manZ; mannose PTS system EIID component D DQ08_04265 PTS system mannitol-specific transporter subunit IIA K02798 cmtB; mannitol PTS system EIIA component [EC:2.7.1.197] D DQ08_04255 PTS mannitol transporter subunit IIB K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197] C 00052 Galactose metabolism [PATH:siq00052] D DQ08_01415 galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D DQ08_01420 galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D DQ08_01425 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D DQ08_09385 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D DQ08_04530 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D DQ08_02695 glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D DQ08_08000 beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D DQ08_00290 beta-galactosidase K12308 bgaB; beta-galactosidase [EC:3.2.1.23] D DQ08_02350 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] D DQ08_09580 PTS galactitol transporter subunit IIC K02775 gatC; galactitol PTS system EIIC component D DQ08_04235 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D DQ08_00280 tagatose-bisphosphate aldolase K01635 lacD; tagatose 1,6-diphosphate aldolase [EC:4.1.2.40] D DQ08_08475 sucrose-6-phosphate hydrolase K01193 INV; beta-fructofuranosidase [EC:3.2.1.26] D DQ08_01010 PTS N-acetylgalactosamine transporter subunit IIA K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-] D DQ08_01020 PTS N-acetylgalactosamine transporter subunit IIB K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-] D DQ08_01025 PTS system N-acetylgalactosamine-specific transporter subunit IIC K02746 agaW; N-acetylgalactosamine PTS system EIIC component D DQ08_01030 PTS system N-acetylgalactosamine-specific transporter subunit IID K02747 agaE; N-acetylgalactosamine PTS system EIID component D DQ08_00275 agaS; tagatose-6-phosphate ketose isomerase K02082 agaS; D-galactosamine 6-phosphate deaminase/isomerase [EC:3.5.99.-] C 00053 Ascorbate and aldarate metabolism [PATH:siq00053] D DQ08_09410 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D DQ08_04090 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D DQ08_09615 PTS system ascorbate-specific transporter subunit IIA K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194] D DQ08_09620 PTS system ascorbate-specific transporter subunit IIB K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194] D DQ08_09825 PTS lactose transporter subunit IIB K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194] D DQ08_09625 PTS system ascorbate-specific transporter subunit IIC K03475 ulaA; ascorbate PTS system EIIC component D DQ08_09820 PTS ascorbate transporter subunit IIC K03475 ulaA; ascorbate PTS system EIIC component D DQ08_09550 ascorbate 6-phosphate lactonase K03476 ulaG; L-ascorbate 6-phosphate lactonase [EC:3.1.1.-] D DQ08_09610 ulaD; 3-keto-L-gulonate-6-phosphate decarboxylase K03078 ulaD; 3-dehydro-L-gulonate-6-phosphate decarboxylase [EC:4.1.1.85] D DQ08_09605 xylulose 5-phosphate 3-epimerase K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22] D DQ08_09600 araD; ribulose 5-phosphate epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4] D DQ08_09570 carbohydrate kinase K00880 lyxK; L-xylulokinase [EC:2.7.1.53] C 00500 Starch and sucrose metabolism [PATH:siq00500] D DQ08_09315 PTS sugar transporter subunit IIA K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211] D DQ08_08470 PTS sucrose transporter subunit IIABC K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211] D DQ08_08475 sucrose-6-phosphate hydrolase K01193 INV; beta-fructofuranosidase [EC:3.2.1.26] D DQ08_09385 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D DQ08_06525 PTS mannose transporter subunit IIA K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D DQ08_06530 PTS sugar transporter K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D DQ08_04625 PTS fructose transporter subunit IIA K02761 celB; cellobiose PTS system EIIC component D DQ08_06515 PTS cellobiose transporter subunit IIC K02761 celB; cellobiose PTS system EIIC component D DQ08_01610 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D DQ08_05080 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D DQ08_05095 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D DQ08_06545 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D DQ08_05880 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] D DQ08_05870 glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21] D DQ08_05885 glycogen branching protein K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D DQ08_03585 maltose phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1] D DQ08_05890 glycogen debranching protein K01200 pulA; pullulanase [EC:3.2.1.41] D DQ08_03530 alpha-amylase K01208 cd; cyclomaltodextrinase / maltogenic alpha-amylase / neopullulanase [EC:3.2.1.54 3.2.1.133 3.2.1.135] D DQ08_03580 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25] D DQ08_01340 PTS system glucose/maltose-specific transporter subunit IIBCA K20108 malT; maltose PTS system EIICB or EIICBA component [EC:2.7.1.208] D DQ08_01345 exodeoxyribonuclease III K06896 mapP; maltose 6'-phosphate phosphatase [EC:3.1.3.90] D DQ08_03535 alpha-amylase K00701 cgt; cyclomaltodextrin glucanotransferase [EC:2.4.1.19] D DQ08_09835 alpha-amylase K01226 treC; trehalose-6-phosphate hydrolase [EC:3.2.1.93] D DQ08_04530 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D DQ08_02695 glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D DQ08_09430 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D DQ08_08465 fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:siq00520] D DQ08_03250 beta-hexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D DQ08_01575 N-acetyl-beta-D-glucosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D DQ08_07980 N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] D DQ08_03020 glucosamine-6-phosphate deaminase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6] D DQ08_08465 fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D DQ08_04250 glucosamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D DQ08_03820 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D DQ08_07000 glmU; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D DQ08_03200 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D DQ08_05820 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D DQ08_05170 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D DQ08_09160 N-acetylmannosamine-6-phosphate 2-epimerase K01788 nanE; N-acylglucosamine-6-phosphate 2-epimerase [EC:5.1.3.9] D DQ08_09190 N-acetylmannosamine-6-phosphate 2-epimerase K01788 nanE; N-acylglucosamine-6-phosphate 2-epimerase [EC:5.1.3.9] D DQ08_09135 N-acetylneuraminate lyase K01639 E4.1.3.3; N-acetylneuraminate lyase [EC:4.1.3.3] D DQ08_02695 glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D DQ08_04530 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D DQ08_09385 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D DQ08_09410 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D DQ08_04090 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D DQ08_01415 galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D DQ08_01420 galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D DQ08_01425 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D DQ08_00310 PTS fructose transporter subunit IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D DQ08_08140 PTS system mannost-specific transporter subunits IIAB K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191] D DQ08_08145 PTS mannose transporter subunit IIC K02795 manY; mannose PTS system EIIC component D DQ08_00300 PTS fructose transporter subunit IIC K02795 manY; mannose PTS system EIIC component D DQ08_08150 PTS system mannose family transporter subunit IID K02796 manZ; mannose PTS system EIID component D DQ08_00305 PTS fructose transporter subunit IID K02796 manZ; mannose PTS system EIID component D DQ08_09430 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D DQ08_08460 mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D DQ08_05880 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] C 00620 Pyruvate metabolism [PATH:siq00620] D DQ08_01165 pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D DQ08_03770 pyruvate dehydrogenase K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D DQ08_03775 pyruvate dehydrogenase K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D DQ08_03780 iron ABC transporter ATP-binding protein K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D DQ08_03785 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DQ08_08620 formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D DQ08_01150 acetaldehyde dehydrogenase K00132 E1.2.1.10; acetaldehyde dehydrogenase (acetylating) [EC:1.2.1.10] D DQ08_00360 acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D DQ08_01095 aldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D DQ08_00605 adhP; ethanol-active dehydrogenase/acetaldehyde-active reductase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D DQ08_00775 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D DQ08_05015 eutD; phosphotransacetylase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D DQ08_01155 phosphate propanoyltransferase K15024 K15024; putative phosphotransacetylase [EC:2.3.1.8] D DQ08_04240 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D DQ08_08175 acetyl-CoA carboxylase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D DQ08_08195 acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D DQ08_08185 acetyl-CoA carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D DQ08_08180 acetyl-CoA carboxylase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D DQ08_07415 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D DQ08_05580 L-2-hydroxyisocaproate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D DQ08_04890 lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D DQ08_04670 lactate dehydrogenase K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28] D DQ08_06755 lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D DQ08_07105 glyoxalase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D DQ08_06485 glyoxalase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D DQ08_06130 hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D DQ08_05125 malate dehydrogenase K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D DQ08_01825 oxaloacetate decarboxylase K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2] D DQ08_01795 glutaconyl-CoA decarboxylase subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D DQ08_01830 phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D DQ08_08310 pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:siq00630] D DQ08_10125 5'-nucleotidase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D DQ08_08980 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D DQ08_04910 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D DQ08_03785 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DQ08_09630 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D DQ08_03220 2-dehydro-3-deoxyphosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D DQ08_00990 keto-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] C 00640 Propanoate metabolism [PATH:siq00640] D DQ08_00775 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D DQ08_05015 eutD; phosphotransacetylase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D DQ08_01155 phosphate propanoyltransferase K15024 K15024; putative phosphotransacetylase [EC:2.3.1.8] D DQ08_03785 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DQ08_08620 formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D DQ08_08175 acetyl-CoA carboxylase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D DQ08_08195 acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D DQ08_08185 acetyl-CoA carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D DQ08_08180 acetyl-CoA carboxylase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D DQ08_05580 L-2-hydroxyisocaproate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D DQ08_04890 lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] C 00650 Butanoate metabolism [PATH:siq00650] D DQ08_03385 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D DQ08_01150 acetaldehyde dehydrogenase K00132 E1.2.1.10; acetaldehyde dehydrogenase (acetylating) [EC:1.2.1.10] D DQ08_00360 acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D DQ08_01095 aldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D DQ08_01795 glutaconyl-CoA decarboxylase subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D DQ08_01790 acetyl-CoA carboxylase K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma D DQ08_03955 succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D DQ08_08620 formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D DQ08_01165 pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D DQ08_05290 DNA-binding protein K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] C 00660 C5-Branched dibasic acid metabolism C 00562 Inositol phosphate metabolism [PATH:siq00562] D DQ08_04425 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D DQ08_07005 NAD(P)-dependent oxidoreductase K22230 iolU; scyllo-inositol 2-dehydrogenase (NADP+) [EC:1.1.1.-] D DQ08_06205 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:siq00190] D DQ08_00660 NADH dehydrogenase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D DQ08_00665 cytochrome D ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D DQ08_00670 cytochrome C oxidase assembly protein K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D DQ08_05845 ATP F0F1 synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D DQ08_05835 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D DQ08_05840 ATP synthase F0F1 subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D DQ08_05850 ATP synthase F0F1 subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D DQ08_05830 ATP synthase F0F1 subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D DQ08_05860 ATP synthase F0F1 subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a D DQ08_05855 ATP synthase F0F1 subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b D DQ08_05865 ATP F0F1 synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c D DQ08_07285 inorganic pyrophosphatase K15986 ppaC; manganese-dependent inorganic pyrophosphatase [EC:3.6.1.1] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation in photosynthetic organisms C 00720 Carbon fixation pathways in prokaryotes C 00680 Methane metabolism [PATH:siq00680] D DQ08_04910 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D DQ08_05960 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D DQ08_01980 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D DQ08_06155 fructose 1,6-bisphosphatase K04041 fbp3; fructose-1,6-bisphosphatase III [EC:3.1.3.11] D DQ08_04235 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D DQ08_00775 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D DQ08_05015 eutD; phosphotransacetylase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D DQ08_02885 phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D DQ08_07135 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D DQ08_07145 MFS transporter K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D DQ08_05980 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 00910 Nitrogen metabolism [PATH:siq00910] D DQ08_05340 glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D DQ08_08980 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D DQ08_09075 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] D DQ08_02600 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] D DQ08_09300 carbonate dehydratase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] C 00920 Sulfur metabolism [PATH:siq00920] D DQ08_06060 phosphoesterase K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] D DQ08_01515 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D DQ08_07700 cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:siq00061] D DQ08_08175 acetyl-CoA carboxylase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D DQ08_08195 acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D DQ08_08185 acetyl-CoA carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D DQ08_08180 acetyl-CoA carboxylase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D DQ08_08220 acyl carrier protein K02078 acpP; acyl carrier protein D DQ08_00260 acyl carrier protein K02078 acpP; acyl carrier protein D DQ08_08210 ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D DQ08_08225 3-oxoacyl-ACP synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D DQ08_08200 3-oxoacyl-ACP synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D DQ08_07010 fabG; 3-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D DQ08_08205 3-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D DQ08_08190 hydroxymyristoyl-ACP dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D DQ08_08215 2-nitropropane dioxygenase K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9] D DQ08_08235 enoyl-CoA hydratase K18474 fabM; trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:5.3.3.14] D DQ08_03370 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:siq00071] D DQ08_03390 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D DQ08_03385 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D DQ08_03375 glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D DQ08_03370 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D DQ08_00360 acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D DQ08_01095 aldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D DQ08_00605 adhP; ethanol-active dehydrogenase/acetaldehyde-active reductase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:siq00561] D DQ08_09630 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D DQ08_06660 dihydroxyacetone kinase K05878 dhaK; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaK [EC:2.7.1.121] D DQ08_06655 dihydroxyacetone kinase K05879 dhaL; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaL [EC:2.7.1.121] D DQ08_06650 PTS system mannnose-specific family transporter subunit IIA K05881 dhaM; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaM [EC:2.7.1.121] D DQ08_07945 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D DQ08_00255 phosphate acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D DQ08_04150 glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D DQ08_02980 acyl-phosphate glycerol 3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D DQ08_05895 lipid kinase K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107] D DQ08_06720 1,2-diacylglycerol 3-glucosyltransferase K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337] D DQ08_06725 glycosyl transferase family 1 K13677 dgs; 1,2-diacylglycerol-3-alpha-glucose alpha-1,2-glucosyltransferase [EC:2.4.1.208] D DQ08_08540 alkaline phosphatase K19005 ltaS; lipoteichoic acid synthase [EC:2.7.8.20] D DQ08_05605 alkaline phosphatase K19005 ltaS; lipoteichoic acid synthase [EC:2.7.8.20] D DQ08_02350 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] C 00564 Glycerophospholipid metabolism [PATH:siq00564] D DQ08_09380 glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D DQ08_07940 alpha-glycerophosphate oxidase K00105 E1.1.3.21; alpha-glycerophosphate oxidase [EC:1.1.3.21] D DQ08_04150 glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D DQ08_02980 acyl-phosphate glycerol 3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D DQ08_05895 lipid kinase K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107] D DQ08_03350 glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D DQ08_06165 glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D DQ08_01445 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D DQ08_10150 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D DQ08_04560 hypothetical protein K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] C 00565 Ether lipid metabolism C 00600 Sphingolipid metabolism [PATH:siq00600] D DQ08_08755 hypothetical protein K01201 GBA; glucosylceramidase [EC:3.2.1.45] D DQ08_08000 beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D DQ08_09165 sialidase K01186 NEU1; sialidase-1 [EC:3.2.1.18] D DQ08_02350 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] D DQ08_01575 N-acetyl-beta-D-glucosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism [PATH:siq00592] D DQ08_03390 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01040 Biosynthesis of unsaturated fatty acids B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:siq00230] D DQ08_06995 ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D DQ08_03985 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7] D DQ08_04530 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D DQ08_05040 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D DQ08_00240 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D DQ08_00330 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D DQ08_03645 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D DQ08_03995 purine nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1] D DQ08_04000 purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D DQ08_00065 hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] D DQ08_10185 inosine-5-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D DQ08_03895 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D DQ08_07380 deoxyribonucleotide triphosphate pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D DQ08_04980 xanthine phosphoribosyltransferase K03816 xpt; xanthine phosphoribosyltransferase [EC:2.4.2.22] D DQ08_04820 GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D DQ08_04985 guanosine 5'-monophosphate oxidoreductase K00364 guaC; GMP reductase [EC:1.7.1.7] D DQ08_07770 guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D DQ08_03115 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D DQ08_09875 ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D DQ08_01365 GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D DQ08_05030 GTP pyrophosphokinase K07816 E2.7.6.5; GTP pyrophosphokinase [EC:2.7.6.5] D DQ08_00900 adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D DQ08_06035 adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4] D DQ08_01360 cpdB; 2', 3'-cyclic nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6] D DQ08_00490 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D DQ08_09075 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] D DQ08_02600 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] C 00240 Pyrimidine metabolism [PATH:siq00240] D DQ08_02880 dihydroorotate dehydrogenase K00226 pyrD; dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1] D DQ08_04105 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D DQ08_04100 orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D DQ08_06930 pyrH; uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D DQ08_03895 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D DQ08_01945 CTP synthetase K01937 pyrG; CTP synthase [EC:6.3.4.2] D DQ08_05625 cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D DQ08_03160 uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48] D DQ08_01200 phosphoribulokinase K00876 udk; uridine kinase [EC:2.7.1.48] D DQ08_03950 HAD family hydrolase K25434 pynA; pyrimidine 5'-nucleotidase [EC:3.1.3.-] D DQ08_07230 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D DQ08_05490 phosphoribosyl transferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D DQ08_01360 cpdB; 2', 3'-cyclic nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6] D DQ08_04490 deoA; thymidine phosphorylase K00756 pdp; pyrimidine-nucleoside phosphorylase [EC:2.4.2.2] D DQ08_04500 cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5] D DQ08_09875 ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D DQ08_03115 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D DQ08_08505 competence protein ComE K01493 comEB; dCMP deaminase [EC:3.5.4.12] D DQ08_07175 thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D DQ08_09310 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D DQ08_04935 thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21] D DQ08_05285 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] D DQ08_05010 hypothetical protein K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:siq00250] D DQ08_08380 asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D DQ08_02610 asparagine synthetase AsnA K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1] D DQ08_06120 aspartate aminotransferase K22457 E2.6.1.14; asparagine---oxo-acid transaminase [EC:2.6.1.14] D DQ08_03090 hydrolase K13566 NIT2; omega-amidase [EC:3.5.1.3] D DQ08_08355 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D DQ08_09255 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D DQ08_09250 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D DQ08_00900 adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D DQ08_00330 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D DQ08_03955 succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D DQ08_05340 glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D DQ08_08980 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D DQ08_04250 glucosamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] C 00260 Glycine, serine and threonine metabolism [PATH:siq00260] D DQ08_04565 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D DQ08_05210 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D DQ08_05205 serine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39] D DQ08_00365 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D DQ08_04910 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D DQ08_09630 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D DQ08_02885 phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D DQ08_07135 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D DQ08_07145 MFS transporter K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D DQ08_05980 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D DQ08_05010 hypothetical protein K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-] D DQ08_03785 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DQ08_10115 serine dehydratase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D DQ08_10120 serine dehydratase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] C 00270 Cysteine and methionine metabolism [PATH:siq00270] D DQ08_01515 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D DQ08_07700 cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47] D DQ08_09650 cystathionine gamma-synthase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D DQ08_03195 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D DQ08_06985 5'-methylthioadenosine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9] D DQ08_03095 aspartate aminotransferase K08969 mtnE; L-glutamine---4-(methylsulfanyl)-2-oxobutanoate aminotransferase [EC:2.6.1.117] D DQ08_03170 GAF domain-containing protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14] D DQ08_02495 modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D DQ08_07780 S-ribosylhomocysteinase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21] D DQ08_04565 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D DQ08_05210 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D DQ08_04175 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D DQ08_05580 L-2-hydroxyisocaproate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D DQ08_04890 lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D DQ08_10115 serine dehydratase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D DQ08_10120 serine dehydratase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D DQ08_07135 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D DQ08_07145 MFS transporter K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00280 Valine, leucine and isoleucine degradation [PATH:siq00280] D DQ08_04175 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D DQ08_03785 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DQ08_03390 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D DQ08_05290 DNA-binding protein K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:siq00290] D DQ08_04175 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D DQ08_08355 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] C 00300 Lysine biosynthesis [PATH:siq00300] D DQ08_05210 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D DQ08_04565 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D DQ08_04570 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D DQ08_05375 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D DQ08_09425 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117] D DQ08_07560 peptidase M20 K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D DQ08_07395 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D DQ08_00245 aromatic amino acid aminotransferase K00841 patA; aminotransferase [EC:2.6.1.-] D DQ08_09420 N-acetyldiaminopimelate deacetylase K05823 dapL; N-acetyldiaminopimelate deacetylase [EC:3.5.1.47] D DQ08_02920 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation [PATH:siq00310] D DQ08_03785 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DQ08_03375 glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D DQ08_03955 succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00220 Arginine biosynthesis [PATH:siq00220] D DQ08_09080 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D DQ08_02585 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D DQ08_09255 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D DQ08_09250 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D DQ08_02570 arginine deiminase K01478 arcA; arginine deiminase [EC:3.5.3.6] D DQ08_08980 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D DQ08_09075 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] D DQ08_02600 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] D DQ08_05340 glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D DQ08_08355 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] C 00330 Arginine and proline metabolism [PATH:siq00330] D DQ08_04125 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D DQ08_01310 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D DQ08_00795 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D DQ08_07895 gamma-glutamyl kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D DQ08_07890 gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] C 00340 Histidine metabolism [PATH:siq00340] D DQ08_06045 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D DQ08_06315 histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D DQ08_06345 urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49] D DQ08_06350 imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7] D DQ08_06300 formimidoylglutamase K01479 hutG; formiminoglutamase [EC:3.5.3.8] D DQ08_06340 glutamate formiminotransferase K00603 fctD; glutamate formiminotransferase / 5-formyltetrahydrofolate cyclo-ligase [EC:2.1.2.5 6.3.3.2] C 00350 Tyrosine metabolism [PATH:siq00350] D DQ08_06045 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D DQ08_00360 acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D DQ08_01095 aldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D DQ08_00605 adhP; ethanol-active dehydrogenase/acetaldehyde-active reductase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D DQ08_03955 succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00360 Phenylalanine metabolism [PATH:siq00360] D DQ08_06045 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D DQ08_04125 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D DQ08_01310 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] C 00380 Tryptophan metabolism [PATH:siq00380] D DQ08_03785 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DQ08_03375 glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D DQ08_04125 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D DQ08_01310 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:siq00400] D DQ08_07305 3-deoxy-7-phosphoheptulonate synthase K03856 AROA2; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D DQ08_07300 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] D DQ08_05595 aroD; 3-dehydroquinate dehydratase K03785 aroD; 3-dehydroquinate dehydratase I [EC:4.2.1.10] D DQ08_03280 shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71] D DQ08_03275 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D DQ08_05590 chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D DQ08_01300 anthranilate synthase subunit II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D DQ08_06025 hypothetical protein K04516 AROA1; chorismate mutase [EC:5.4.99.5] D DQ08_06045 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism C 00430 Taurine and hypotaurine metabolism [PATH:siq00430] D DQ08_05015 eutD; phosphotransacetylase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D DQ08_01155 phosphate propanoyltransferase K15024 K15024; putative phosphotransacetylase [EC:2.3.1.8] D DQ08_00775 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00440 Phosphonate and phosphinate metabolism C 00450 Selenocompound metabolism [PATH:siq00450] D DQ08_09650 cystathionine gamma-synthase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D DQ08_02050 cysteine desulfurase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D DQ08_07845 thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D DQ08_07045 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:siq00460] D DQ08_08380 asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D DQ08_02610 asparagine synthetase AsnA K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1] D DQ08_04910 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:siq00470] D DQ08_08445 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D DQ08_02915 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D DQ08_03505 alanine-phosphoribitol ligase K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13] D DQ08_03515 alanine-phosphoribitol ligase K14188 dltC; D-alanine--poly(phosphoribitol) ligase subunit 2 [EC:6.1.1.13] D DQ08_07385 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D DQ08_02720 murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D DQ08_07395 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] C 00480 Glutathione metabolism [PATH:siq00480] D DQ08_04460 aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D DQ08_05575 glutathione reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7] D DQ08_04845 glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation [PATH:siq00511] D DQ08_09165 sialidase K01186 NEU1; sialidase-1 [EC:3.2.1.18] D DQ08_08000 beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D DQ08_01575 N-acetyl-beta-D-glucosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D DQ08_01565 alpha-mannosidase K01191 MAN2C1; alpha-mannosidase [EC:3.2.1.24] D DQ08_08755 hypothetical protein K01201 GBA; glucosylceramidase [EC:3.2.1.45] C 00540 Lipopolysaccharide biosynthesis C 00542 O-Antigen repeat unit biosynthesis [PATH:siq00542] D DQ08_02035 UDP-N-acetylglucosamine:UDP-P N-acetylglucosaminyl-1-P transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:siq00541] D DQ08_09385 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D DQ08_01425 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D DQ08_09410 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D DQ08_04090 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D DQ08_03685 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D DQ08_03695 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D DQ08_03690 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D DQ08_05730 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D DQ08_08460 mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D DQ08_07000 glmU; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D DQ08_04035 short-chain dehydrogenase K24300 wbpM; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135] C 00550 Peptidoglycan biosynthesis [PATH:siq00550] D DQ08_03200 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D DQ08_05820 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D DQ08_05170 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D DQ08_07440 UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D DQ08_02720 murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D DQ08_02915 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D DQ08_02920 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D DQ08_06880 UDP kinase K00887 dgkA; undecaprenol kinase [EC:2.7.1.66] D DQ08_01440 UDP pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D DQ08_02025 UDP pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D DQ08_07330 phosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D DQ08_07870 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D DQ08_02725 UDP-diphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D DQ08_07815 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D DQ08_02080 peptidase M15 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D DQ08_02085 peptidase M15 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D DQ08_08170 D-alanyl-D-alanine carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D DQ08_08265 D-alanyl-D-alanine carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D DQ08_07240 UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase K05362 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [EC:6.3.2.7] D DQ08_03805 UDP-N-acetylmuramyl peptide synthase K23393 murT; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13] D DQ08_03800 glutamine amidotransferase K07009 gatD; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13] D DQ08_00640 UDP-N-acetylmuramoylpentapeptide-lysine N(6)-alanyltransferase K05363 murM; serine/alanine adding enzyme [EC:2.3.2.10] D DQ08_06195 UDP-N-acetylmuramoylpentapeptide-lysine N(6)-alanyltransferase K05363 murM; serine/alanine adding enzyme [EC:2.3.2.10] D DQ08_06200 peptidoglycan branched peptide synthesis protein K12554 murN; alanine adding enzyme [EC:2.3.2.-] D DQ08_00715 transglycosylase K03693 pbp1b; penicillin-binding protein 1B D DQ08_02905 penicillin-binding protein K00687 pbp2B; penicillin-binding protein 2B D DQ08_07875 penicillin-binding protein K12556 pbp2X; penicillin-binding protein 2X C 00552 Teichoic acid biosynthesis [PATH:siq00552] D DQ08_02025 UDP pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D DQ08_07330 phosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D DQ08_02035 UDP-N-acetylglucosamine:UDP-P N-acetylglucosaminyl-1-P transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D DQ08_02285 glycosyl transferase family 4 K00712 tagE; poly(glycerol-phosphate) alpha-glucosyltransferase [EC:2.4.1.52] D DQ08_03505 alanine-phosphoribitol ligase K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13] D DQ08_03515 alanine-phosphoribitol ligase K14188 dltC; D-alanine--poly(phosphoribitol) ligase subunit 2 [EC:6.1.1.13] D DQ08_03510 D-alanyl-lipoteichoic acid biosynthesis protein K03739 dltB; membrane protein involved in D-alanine export D DQ08_03520 cytochrome C552 K03740 dltD; D-alanine transfer protein D DQ08_08110 transporter K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-] D DQ08_03285 LytR family transcriptional regulator K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-] D DQ08_04015 LytR family transcriptional regulator K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-] D DQ08_08540 alkaline phosphatase K19005 ltaS; lipoteichoic acid synthase [EC:2.7.8.20] D DQ08_05605 alkaline phosphatase K19005 ltaS; lipoteichoic acid synthase [EC:2.7.8.20] D DQ08_06720 1,2-diacylglycerol 3-glucosyltransferase K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337] D DQ08_04035 short-chain dehydrogenase K24300 wbpM; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis [PATH:siq00543] D DQ08_02035 UDP-N-acetylglucosamine:UDP-P N-acetylglucosaminyl-1-P transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D DQ08_01515 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:siq00730] D DQ08_05565 aminotransferase V K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D DQ08_05045 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D DQ08_05560 thiamine biosynthesis protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D DQ08_09065 ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D DQ08_09055 thiamine pyrophosphokinase K00949 thiN; thiamine pyrophosphokinase [EC:2.7.6.2] D DQ08_00490 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:siq00740] D DQ08_08130 HAD family hydrolase K21064 ycsE; 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.104] D DQ08_04410 riboflavin biosynthesis protein RibF K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] D DQ08_06995 ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] C 00750 Vitamin B6 metabolism [PATH:siq00750] D DQ08_00595 ABC transporter ATP-binding protein K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5] D DQ08_01910 phosphomethylpyrimidine kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35] D DQ08_07145 MFS transporter K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D DQ08_00365 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] C 00760 Nicotinate and nicotinamide metabolism [PATH:siq00760] D DQ08_03995 purine nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1] D DQ08_04000 purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D DQ08_07615 nadD; nicotinic acid mononucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D DQ08_10040 NTP pyrophosphohydrolase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22] D DQ08_07820 NAD synthetase K01916 nadE; NAD+ synthase [EC:6.3.1.5] D DQ08_05025 ATP-NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] D DQ08_03955 succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00770 Pantothenate and CoA biosynthesis [PATH:siq00770] D DQ08_05425 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D DQ08_04480 pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33] D DQ08_04545 phosphopantothenate--cysteine ligase K21977 coaB; phosphopantothenate---cysteine ligase (CTP) [EC:6.3.2.5] D DQ08_04540 phosphopantothenoylcysteine decarboxylase K01598 PPCDC; phosphopantothenoylcysteine decarboxylase [EC:4.1.1.36] D DQ08_02620 phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D DQ08_06815 dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D DQ08_08450 4'-phosphopantetheinyl transferase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] D DQ08_04175 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] C 00780 Biotin metabolism [PATH:siq00780] D DQ08_08200 3-oxoacyl-ACP synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D DQ08_07010 fabG; 3-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D DQ08_08205 3-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D DQ08_08190 hydroxymyristoyl-ACP dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D DQ08_03185 GntR family transcriptional regulator K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism [PATH:siq00785] D DQ08_04550 lipoate--protein ligase K16869 lipL; octanoyl-[GcvH]:protein N-octanoyltransferase [EC:2.3.1.204] D DQ08_03795 lipoate--protein ligase K03800 lplA; lipoate---protein ligase [EC:6.3.1.20] D DQ08_03785 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DQ08_03770 pyruvate dehydrogenase K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D DQ08_03775 pyruvate dehydrogenase K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D DQ08_03780 iron ABC transporter ATP-binding protein K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] C 00790 Folate biosynthesis [PATH:siq00790] D DQ08_05195 GTP cyclohydrolase K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D DQ08_06305 GTP cyclohydrolase K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D DQ08_05185 dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81] D DQ08_05180 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D DQ08_05190 dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D DQ08_05280 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D DQ08_05200 dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D DQ08_06310 dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D DQ08_01305 aminobenzoate synthetase K03342 pabBC; para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase [EC:2.6.1.85 4.1.3.38] C 00670 One carbon pool by folate [PATH:siq00670] D DQ08_05280 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D DQ08_04555 formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3] D DQ08_06330 formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3] D DQ08_02805 5,10-methylene-tetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D DQ08_06335 sugar ABC transporter substrate-binding protein K01500 fchA; methenyltetrahydrofolate cyclohydrolase [EC:3.5.4.9] D DQ08_04910 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D DQ08_06340 glutamate formiminotransferase K00603 fctD; glutamate formiminotransferase / 5-formyltetrahydrofolate cyclo-ligase [EC:2.1.2.5 6.3.3.2] D DQ08_07755 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D DQ08_05285 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] D DQ08_09400 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism C 00130 Ubiquinone and other terpenoid-quinone biosynthesis D DQ08_00655 1,4-dihydroxy-2-naphthoate prenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:siq00900] D DQ08_00690 ipk; 4-diphosphocytidyl-2C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D DQ08_05290 DNA-binding protein K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] D DQ08_05295 3-hydroxy-3-methylglutaryl-CoA reductase K00054 mvaA; hydroxymethylglutaryl-CoA reductase [EC:1.1.1.88] D DQ08_05315 mevalonate kinase K00869 MVK; mevalonate kinase [EC:2.7.1.36] D DQ08_05305 phosphomevalonate kinase K00938 E2.7.4.2; phosphomevalonate kinase [EC:2.7.4.2] D DQ08_05310 diphosphomevalonate decarboxylase K01597 MVD; diphosphomevalonate decarboxylase [EC:4.1.1.33] D DQ08_05300 isopentenyl pyrophosphate isomerase K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2] D DQ08_02820 geranyl transferase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D DQ08_01440 UDP pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation C 00907 Pinene, camphor and geraniol degradation [PATH:siq00907] D DQ08_03390 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D DQ08_09810 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D DQ08_09815 carbohydrate degradation protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D DQ08_07910 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis [PATH:siq00523] D DQ08_03685 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D DQ08_03695 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D DQ08_03690 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D DQ08_05730 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides C 01055 Biosynthesis of vancomycin group antibiotics D DQ08_03695 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis D DQ08_03005 D-Ala-D-Ala carboxypeptidase K17836 penP; beta-lactamase class A [EC:3.5.2.6] C 00332 Carbapenem biosynthesis [PATH:siq00332] D DQ08_07895 gamma-glutamyl kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D DQ08_07890 gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] C 00261 Monobactam biosynthesis [PATH:siq00261] D DQ08_04565 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D DQ08_04570 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D DQ08_05375 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:siq00521] D DQ08_02695 glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D DQ08_04530 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D DQ08_04425 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D DQ08_03685 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D DQ08_03695 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D DQ08_03690 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D DQ08_05730 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 00524 Neomycin, kanamycin and gentamicin biosynthesis D DQ08_02695 glucokinase K25026 glk; glucokinase [EC:2.7.1.2] C 00525 Acarbose and validamycin biosynthesis [PATH:siq00525] D DQ08_03685 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D DQ08_03695 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00401 Novobiocin biosynthesis D DQ08_06045 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis D DQ08_01300 anthranilate synthase subunit II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] C 00333 Prodigiosin biosynthesis D DQ08_08210 ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D DQ08_07010 fabG; 3-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D DQ08_08205 3-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D DQ08_08220 acyl carrier protein K02078 acpP; acyl carrier protein D DQ08_00260 acyl carrier protein K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites D DQ08_03195 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] C 00997 Biosynthesis of various other secondary metabolites B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation [PATH:siq00362] D DQ08_03390 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D DQ08_04960 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] D DQ08_03385 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D DQ08_01795 glutaconyl-CoA decarboxylase subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D DQ08_01790 acetyl-CoA carboxylase K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma D DQ08_03375 glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] C 00627 Aminobenzoate degradation [PATH:siq00627] D DQ08_04125 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D DQ08_01310 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D DQ08_07415 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] C 00364 Fluorobenzoate degradation C 00625 Chloroalkane and chloroalkene degradation [PATH:siq00625] D DQ08_00605 adhP; ethanol-active dehydrogenase/acetaldehyde-active reductase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D DQ08_00360 acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D DQ08_01095 aldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] C 00361 Chlorocyclohexane and chlorobenzene degradation C 00623 Toluene degradation C 00622 Xylene degradation D DQ08_04960 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] C 00633 Nitrotoluene degradation C 00642 Ethylbenzene degradation D DQ08_03390 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 00643 Styrene degradation [PATH:siq00643] D DQ08_04125 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D DQ08_01310 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] C 00791 Atrazine degradation C 00930 Caprolactam degradation C 00363 Bisphenol degradation C 00621 Dioxin degradation D DQ08_04960 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] C 00626 Naphthalene degradation [PATH:siq00626] D DQ08_00605 adhP; ethanol-active dehydrogenase/acetaldehyde-active reductase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D DQ08_00360 acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D DQ08_01095 aldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:siq03020] D DQ08_00720 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D DQ08_00725 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D DQ08_00515 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D DQ08_07765 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D DQ08_01940 DNA-directed RNA polymerase subunit delta K03048 rpoE; DNA-directed RNA polymerase subunit delta C 03022 Basal transcription factors C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:siq03010] D DQ08_04195 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D DQ08_09785 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D DQ08_00415 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D DQ08_10075 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D DQ08_00470 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D DQ08_08555 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D DQ08_09025 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D DQ08_00455 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D DQ08_01675 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D DQ08_07455 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D DQ08_00380 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D DQ08_00510 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D DQ08_09030 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D DQ08_00505 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D DQ08_00450 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D DQ08_08920 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D DQ08_01500 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D DQ08_05460 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D DQ08_00430 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D DQ08_08545 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D DQ08_00405 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D DQ08_04475 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D DQ08_05760 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D DQ08_06935 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D DQ08_00400 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D DQ08_00385 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D DQ08_00390 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D DQ08_00445 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D DQ08_00460 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D DQ08_05240 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D DQ08_10090 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D DQ08_05245 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D DQ08_06940 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D DQ08_01670 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D DQ08_07460 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D DQ08_00435 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D DQ08_00480 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D DQ08_00420 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D DQ08_00520 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D DQ08_00465 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D DQ08_06015 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D DQ08_05610 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D DQ08_05520 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D DQ08_00410 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D DQ08_00395 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D DQ08_00440 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D DQ08_05510 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D DQ08_01990 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D DQ08_00425 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D DQ08_00475 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D DQ08_06080 50S ribosomal protein L31 type B K02909 RP-L31; large subunit ribosomal protein L31 D DQ08_09995 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D DQ08_09195 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D DQ08_05615 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D DQ08_07665 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D DQ08_01870 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D DQ08_00120 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D DQ08_02125 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D DQ08_00130 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D DQ08_02135 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D DQ08_07655 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D DQ08_01880 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D DQ08_00135 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D DQ08_02140 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D DQ08_01885 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D DQ08_07650 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:siq00970] D DQ08_00125 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D DQ08_07660 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D DQ08_01875 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D DQ08_02130 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D DQ08_00175 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D DQ08_01895 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D DQ08_07640 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D DQ08_06005 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D DQ08_10220 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D DQ08_04200 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D DQ08_01890 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D DQ08_07645 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D DQ08_10210 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D DQ08_00145 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D DQ08_02150 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D DQ08_09765 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D DQ08_04190 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D DQ08_02175 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D DQ08_10215 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D DQ08_00210 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D DQ08_00165 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D DQ08_00215 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D DQ08_02170 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D DQ08_00170 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D DQ08_01975 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D DQ08_00155 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D DQ08_02160 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D DQ08_00150 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D DQ08_02155 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D DQ08_01290 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D DQ08_00200 tRNA-Met K14230 tRNA-Met; tRNA Met D DQ08_00190 tRNA-Met K14230 tRNA-Met; tRNA Met D DQ08_00185 tRNA-Met K14230 tRNA-Met; tRNA Met D DQ08_00205 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D DQ08_00180 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D DQ08_00195 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D DQ08_07055 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D DQ08_00220 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D DQ08_08075 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D DQ08_00160 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D DQ08_02165 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D DQ08_02400 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D DQ08_04185 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D DQ08_00140 tRNA-Val K14237 tRNA-Val; tRNA Val D DQ08_02145 tRNA-Val K14237 tRNA-Val; tRNA Val D DQ08_09290 glutamyl-tRNA synthetase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24] D DQ08_08300 gatA; glutamyl-tRNA amidotransferase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D DQ08_08295 glutamyl-tRNA amidotransferase K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D DQ08_08305 glutamyl-tRNA amidotransferase K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D DQ08_03075 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D DQ08_09985 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D DQ08_06115 asnC; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D DQ08_07965 glyQ; glycyl-tRNA ligase K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D DQ08_07960 glycyl-tRNA synthase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D DQ08_06715 threonyl-tRNA synthase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D DQ08_08165 serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D DQ08_01520 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D DQ08_07045 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D DQ08_07755 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D DQ08_02445 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D DQ08_09635 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D DQ08_02770 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D DQ08_06280 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D DQ08_09965 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D DQ08_01455 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D DQ08_09990 histidyl-tRNA synthase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D DQ08_05805 pheS; phenylalanine--tRNA ligase K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D DQ08_05795 phenylalanyl-tRNA synthase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D DQ08_00710 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D DQ08_10190 tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:siq03060] D DQ08_00485 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D DQ08_02260 accessory secretory protein SecY K03076 secY; preprotein translocase subunit SecY D DQ08_09680 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D DQ08_06800 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D DQ08_01435 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D DQ08_09240 membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D DQ08_07420 membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D DQ08_02280 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D DQ08_08455 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D DQ08_04795 signal recognition particle K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D DQ08_06555 cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor D DQ08_04245 signal peptidase K03100 lepB; signal peptidase I [EC:3.4.21.89] D DQ08_08600 signal peptidase K03100 lepB; signal peptidase I [EC:3.4.21.89] D DQ08_05500 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:siq04122] D DQ08_05565 aminotransferase V K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D DQ08_05045 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D DQ08_10110 thiouridylase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D DQ08_05560 thiamine biosynthesis protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] C 03050 Proteasome C 03018 RNA degradation [PATH:siq03018] D DQ08_05960 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D DQ08_01505 polynucleotide phosphorylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D DQ08_06795 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D DQ08_02960 RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D DQ08_07775 ribonuclease K18682 rny; ribonucrease Y [EC:3.1.-.-] D DQ08_08950 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-] D DQ08_03745 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-] D DQ08_04235 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D DQ08_08245 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D DQ08_09725 groEL; molecular chaperone GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] B B 09124 Replication and repair C 03030 DNA replication [PATH:siq03030] D DQ08_08905 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D DQ08_04230 dnaE; DNA polymerase III DnaE K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D DQ08_01470 polC; DNA polymerase III PolC K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D DQ08_03175 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DQ08_07170 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D DQ08_02995 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D DQ08_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D DQ08_10085 DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D DQ08_05750 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D DQ08_00825 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D DQ08_08550 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D DQ08_04640 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D DQ08_08595 ribonuclease HIII K03471 rnhC; ribonuclease HIII [EC:3.1.26.4] D DQ08_09525 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D DQ08_05900 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:siq03410] D DQ08_03655 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D DQ08_04140 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D DQ08_08565 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D DQ08_06820 5-hydroxymethyluracil DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D DQ08_09930 3-methyladenine DNA glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D DQ08_07095 exodeoxyribonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D DQ08_09525 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D DQ08_03640 single-stranded DNA exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DQ08_05900 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:siq03420] D DQ08_00030 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D DQ08_08515 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D DQ08_03495 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D DQ08_04315 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D DQ08_09525 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D DQ08_05900 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03430 Mismatch repair [PATH:siq03430] D DQ08_09950 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D DQ08_08580 DNA mismatch repair protein MutS K07456 mutS2; DNA mismatch repair protein MutS2 D DQ08_09945 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D DQ08_04315 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D DQ08_02810 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D DQ08_02815 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DQ08_03640 single-stranded DNA exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DQ08_00825 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D DQ08_08550 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D DQ08_04230 dnaE; DNA polymerase III DnaE K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D DQ08_01470 polC; DNA polymerase III PolC K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D DQ08_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D DQ08_03175 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DQ08_02995 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D DQ08_07170 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D DQ08_08905 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D DQ08_05900 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DQ08_02455 DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] C 03440 Homologous recombination [PATH:siq03440] D DQ08_03640 single-stranded DNA exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DQ08_00825 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D DQ08_08550 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D DQ08_10175 recombinase RecF K03629 recF; DNA replication and repair protein RecF D DQ08_00250 DNA recombination protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D DQ08_02910 recombinase K06187 recR; recombination protein RecR D DQ08_09920 recombinase RecA K03553 recA; recombination protein RecA D DQ08_09525 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D DQ08_09935 ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D DQ08_00340 ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D DQ08_08390 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D DQ08_08605 exodeoxyribonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D DQ08_04230 dnaE; DNA polymerase III DnaE K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D DQ08_01470 polC; DNA polymerase III PolC K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D DQ08_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D DQ08_03175 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DQ08_02995 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D DQ08_07170 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D DQ08_08905 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D DQ08_07760 primosomal protein DnaI K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] C 03450 Non-homologous end-joining C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 [PATH:siq03250] D DQ08_06960 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:siq02010] D DQ08_02530 iron ABC transporter substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein D DQ08_02540 iron ABC transporter permease K02011 afuB; iron(III) transport system permease protein D DQ08_02535 peptide ABC transporter substrate-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D DQ08_05150 spermidine/putrescine ABC transporter substrate-binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein D DQ08_05155 spermidine/purescine ABC transporter permease K11070 potC; spermidine/putrescine transport system permease protein D DQ08_05160 spermidine/putrescine ABC transporter permease K11071 potB; spermidine/putrescine transport system permease protein D DQ08_05165 spermidine/putrescine ABC transporter ATP-binding protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D DQ08_09530 glycine/betaine ABC transporter permease K02001 proW; glycine betaine/proline transport system permease protein D DQ08_09535 glycine/betaine ABC transporter ATP-binding protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D DQ08_04990 glycine/betaine ABC transporter permease K05845 opuC; osmoprotectant transport system substrate-binding protein D DQ08_04995 glycine/betaine ABC transporter ATP-binding protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D DQ08_01390 sugar ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D DQ08_03525 sugar ABC transporter substrate-binding protein K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein D DQ08_03570 sugar ABC transporter substrate-binding protein K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein D DQ08_03540 sugar ABC transporter permease K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D DQ08_03565 sugar ABC transporter permease K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D DQ08_03545 sugar ABC transporter permease K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D DQ08_03560 sugar ABC transporter permease K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D DQ08_01590 sugar ABC transporter substrate-binding protein K17318 lplA; putative aldouronate transport system substrate-binding protein D DQ08_01580 sugar ABC transporter permease K17319 lplB; putative aldouronate transport system permease protein D DQ08_01585 sugar ABC transporter permease K17320 lplC; putative aldouronate transport system permease protein D DQ08_04505 membrane protein K07335 bmpA; basic membrane protein A and related proteins D DQ08_04515 branched-chain amino acid ABC transporter permease K23535 nupB; general nucleoside transport system permease protein D DQ08_04520 sugar ABC transporter permease K23536 nupC; general nucleoside transport system permease protein D DQ08_04510 heme ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein D DQ08_02655 D-ribose transporter subunit RbsB K10439 rbsB; ribose transport system substrate-binding protein D DQ08_02650 rbsC; ribose ABC transporter permease K10440 rbsC; ribose transport system permease protein D DQ08_02645 D-ribose transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D DQ08_02640 ribose pyranase K06726 rbsD; D-ribose pyranase [EC:5.4.99.62] D DQ08_04430 phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D DQ08_06470 phosphate ABC transporter substrate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D DQ08_04435 phosphate ABC transporter permease K02037 pstC; phosphate transport system permease protein D DQ08_06465 phosphate ABC transporter permease K02037 pstC; phosphate transport system permease protein D DQ08_04440 phosphate ABC transporter permease K02038 pstA; phosphate transport system permease protein D DQ08_06460 phosphate ABC transporter permease K02038 pstA; phosphate transport system permease protein D DQ08_04445 phosphate ABC transporter ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D DQ08_04450 phosphate ABC transporter ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D DQ08_06455 phosphate ABC transporter ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D DQ08_03490 amino acid ABC transporter permease K10036 glnH; glutamine transport system substrate-binding protein D DQ08_03485 peptide ABC transporter ATP-binding protein K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1] D DQ08_06625 glutamine ABC transporter substrate-binding protein K10039 peb1A; aspartate/glutamate/glutamine transport system substrate-binding protein D DQ08_06630 glutamine ABC transporter permease K10040 peb1B; aspartate/glutamate/glutamine transport system permease protein D DQ08_06635 glutamine ABC transporter permease K10040 peb1B; aspartate/glutamate/glutamine transport system permease protein D DQ08_06620 ABC transporter K10041 peb1C; aspartate/glutamate/glutamine transport system ATP-binding protein [EC:7.4.2.1] D DQ08_04130 amino acid ABC transporter substrate-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein D DQ08_07570 amino acid ABC transporter substrate-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein D DQ08_04135 amino acid ABC transporter permease K10009 tcyB; L-cystine transport system permease protein D DQ08_07860 amino acid ABC transporter permease K10009 tcyB; L-cystine transport system permease protein D DQ08_07855 amino acid ABC transporter ATP-binding protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1] D DQ08_06050 amino acid ABC transporter substrate-binding protein K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein D DQ08_02795 glutamine ABC transporter permease K17077 artQ; arginine/lysine/histidine transport system permease protein D DQ08_02800 glnQ; glutamine ABC transporter ATP-binding protein K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1] D DQ08_02020 glutamine ABC transporter substrate-binding protein K17073 lysX1; putative lysine transport system substrate-binding protein D DQ08_02015 ABC transporter K17076 lysY; putative lysine transport system ATP-binding protein D DQ08_07205 branched-chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DQ08_07200 ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D DQ08_07195 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D DQ08_07190 branched-chain amino acid ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D DQ08_07185 amino acid ABC transporter ATPase K01996 livF; branched-chain amino acid transport system ATP-binding protein D DQ08_07565 O-sialoglycoprotein endopeptidase K02073 metQ; D-methionine transport system substrate-binding protein D DQ08_07550 methionine ABC transporter permease K02072 metI; D-methionine transport system permease protein D DQ08_07555 methionine ABC transporter ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein D DQ08_08975 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D DQ08_02090 peptide ABC transporter ATP-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D DQ08_06360 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D DQ08_08970 peptide ABC transporter permease K15581 oppB; oligopeptide transport system permease protein D DQ08_02095 peptide ABC transporter permease K15581 oppB; oligopeptide transport system permease protein D DQ08_08965 peptide ABC transporter permease K15582 oppC; oligopeptide transport system permease protein D DQ08_02100 peptide ABC transporter permease K15582 oppC; oligopeptide transport system permease protein D DQ08_08960 peptide ABC transporter ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein D DQ08_08955 peptide ABC transporter substrate-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D DQ08_02110 peptide ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D DQ08_00970 adhesion protein K09815 znuA; zinc transport system substrate-binding protein D DQ08_06085 zinc-binding protein AdcA K09815 znuA; zinc transport system substrate-binding protein D DQ08_00705 zinc ABC transporter permease K09816 znuB; zinc transport system permease protein D DQ08_00700 zinc ABC transporter ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D DQ08_06975 manganese ABC transporter substrate-binding protein K11704 mtsA; iron/zinc/manganese/copper transport system substrate-binding protein D DQ08_06965 manganese ABC transporter substrate-binding protein K11705 mtsC; iron/zinc/manganese/copper transport system permease protein D DQ08_06970 manganese ABC transporter ATP-binding protein K11706 mtsB; iron/zinc/manganese/copper transport system ATP-binding protein D DQ08_09490 biotin biosynthesis protein BioY K03523 bioY; biotin transport system substrate-specific component D DQ08_01850 cobalt ABC transporter permease K16785 ecfT; energy-coupling factor transport system permease protein D DQ08_10135 cobalt ABC transporter permease K16785 ecfT; energy-coupling factor transport system permease protein D DQ08_08400 cobalamin biosynthesis protein CbiQ K16785 ecfT; energy-coupling factor transport system permease protein D DQ08_10145 cbiO; cobalt transporter ATP-binding subunit K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D DQ08_10140 cbiO; cobalt transporter ATP-binding subunit K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D DQ08_09225 multidrug ABC transporter permease K11051 cylB; multidrug/hemolysin transport system permease protein D DQ08_09230 ABC transporter ATP-binding protein K11050 cylA; multidrug/hemolysin transport system ATP-binding protein D DQ08_01180 ABC transporter permease K09813 hrtB; hemin transport system permease protein D DQ08_01185 hemin ABC transporter ATP-binding protein K09814 hrtA; hemin transport system ATP-binding protein [EC:7.6.2.-] D DQ08_01270 lantibiotic ABC transporter permease K20491 nisE; lantibiotic transport system permease protein D DQ08_01275 hypothetical protein K20492 nisG; lantibiotic transport system permease protein D DQ08_01265 lantibiotic ABC transporter ATP-binding protein K20490 nisF; lantibiotic transport system ATP-binding protein D DQ08_04705 ABC transporter permease K19084 braE; bacitracin transport system permease protein D DQ08_04700 bacteriocin ABC transporter ATP-binding protein K19083 braD; bacitracin transport system ATP-binding protein D DQ08_06135 cell division protein FtsX K09811 ftsX; cell division transport system permease protein D DQ08_06140 cell division protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D DQ08_02680 multidrug ABC transporter ATP-binding protein K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump D DQ08_02685 multidrug ABC transporter ATP-binding protein K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump D DQ08_09370 multidrug ABC transporter ATP-binding protein K18891 patA; ATP-binding cassette, subfamily B, multidrug efflux pump D DQ08_09365 multidrug ABC transporter permease K18892 patB; ATP-binding cassette, subfamily B, multidrug efflux pump D DQ08_05325 ABC transporter ATP-binding protein K18216 steA; ATP-binding cassette, subfamily B, tetracycline resistant protein D DQ08_05320 ABC transporter ATP-binding protein K18217 steB; ATP-binding cassette, subfamily B, tetracycline resistant protein D DQ08_05350 multidrug ABC transporter ATP-binding protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump D DQ08_03450 multidrug ABC transporter ATP-binding protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump D DQ08_05345 multidrug ABC transporter ATPase K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump D DQ08_03445 sugar ABC transporter ATP-binding protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump D DQ08_00680 cysteine ABC transporter ATP-binding protein K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC D DQ08_00675 cysteine ABC transporter ATP-binding protein K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD C 02060 Phosphotransferase system (PTS) [PATH:siq02060] D DQ08_03140 phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D DQ08_03135 phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr D DQ08_01340 PTS system glucose/maltose-specific transporter subunit IIBCA K20108 malT; maltose PTS system EIICB or EIICBA component [EC:2.7.1.208] D DQ08_09315 PTS sugar transporter subunit IIA K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211] D DQ08_08470 PTS sucrose transporter subunit IIABC K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211] D DQ08_05105 PTS beta-glucoside transporter subunit IIABC K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-] D DQ08_04265 PTS system mannitol-specific transporter subunit IIA K02798 cmtB; mannitol PTS system EIIA component [EC:2.7.1.197] D DQ08_04255 PTS mannitol transporter subunit IIB K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197] D DQ08_06525 PTS mannose transporter subunit IIA K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D DQ08_06530 PTS sugar transporter K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D DQ08_04625 PTS fructose transporter subunit IIA K02761 celB; cellobiose PTS system EIIC component D DQ08_06515 PTS cellobiose transporter subunit IIC K02761 celB; cellobiose PTS system EIIC component D DQ08_00310 PTS fructose transporter subunit IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D DQ08_08140 PTS system mannost-specific transporter subunits IIAB K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191] D DQ08_08145 PTS mannose transporter subunit IIC K02795 manY; mannose PTS system EIIC component D DQ08_00300 PTS fructose transporter subunit IIC K02795 manY; mannose PTS system EIIC component D DQ08_08150 PTS system mannose family transporter subunit IID K02796 manZ; mannose PTS system EIID component D DQ08_00305 PTS fructose transporter subunit IID K02796 manZ; mannose PTS system EIID component D DQ08_01010 PTS N-acetylgalactosamine transporter subunit IIA K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-] D DQ08_01020 PTS N-acetylgalactosamine transporter subunit IIB K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-] D DQ08_01025 PTS system N-acetylgalactosamine-specific transporter subunit IIC K02746 agaW; N-acetylgalactosamine PTS system EIIC component D DQ08_01030 PTS system N-acetylgalactosamine-specific transporter subunit IID K02747 agaE; N-acetylgalactosamine PTS system EIID component D DQ08_09580 PTS galactitol transporter subunit IIC K02775 gatC; galactitol PTS system EIIC component D DQ08_09615 PTS system ascorbate-specific transporter subunit IIA K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194] D DQ08_09620 PTS system ascorbate-specific transporter subunit IIB K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194] D DQ08_09825 PTS lactose transporter subunit IIB K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194] D DQ08_09625 PTS system ascorbate-specific transporter subunit IIC K03475 ulaA; ascorbate PTS system EIIC component D DQ08_09820 PTS ascorbate transporter subunit IIC K03475 ulaA; ascorbate PTS system EIIC component D DQ08_05410 PTS fructose transporter subunit IIC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D DQ08_05415 phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] C 03070 Bacterial secretion system [PATH:siq03070] D DQ08_09680 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D DQ08_06800 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D DQ08_00485 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D DQ08_02260 accessory secretory protein SecY K03076 secY; preprotein translocase subunit SecY D DQ08_01435 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D DQ08_09240 membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D DQ08_07420 membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D DQ08_02280 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D DQ08_08455 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D DQ08_06555 cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor D DQ08_04795 signal recognition particle K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] B B 09132 Signal transduction C 02020 Two-component system [PATH:siq02020] D DQ08_06475 PhoR family transcriptional regulator K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D DQ08_06480 chemotaxis protein CheY K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D DQ08_04430 phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D DQ08_06470 phosphate ABC transporter substrate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D DQ08_10235 serine protease K04771 degP; serine protease Do [EC:3.4.21.107] D DQ08_06610 histidine kinase K07652 vicK; two-component system, OmpR family, sensor histidine kinase VicK [EC:2.7.13.3] D DQ08_06615 PhoP family transcriptional regulator K07668 vicR; two-component system, OmpR family, response regulator VicR D DQ08_00005 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D DQ08_10020 histidine kinase K10681 saeS; two-component system, OmpR family, sensor histidine kinase SaeS [EC:2.7.13.3] D DQ08_10025 transcriptional regulator K10682 saeR; two-component system, OmpR family, response regulator SaeR D DQ08_04705 ABC transporter permease K19084 braE; bacitracin transport system permease protein D DQ08_04700 bacteriocin ABC transporter ATP-binding protein K19083 braD; bacitracin transport system ATP-binding protein D DQ08_04710 transcriptional regulator K19082 braR; two-component system, OmpR family, response regulator protein BraR/BceR D DQ08_03505 alanine-phosphoribitol ligase K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13] D DQ08_03510 D-alanyl-lipoteichoic acid biosynthesis protein K03739 dltB; membrane protein involved in D-alanine export D DQ08_03515 alanine-phosphoribitol ligase K14188 dltC; D-alanine--poly(phosphoribitol) ligase subunit 2 [EC:6.1.1.13] D DQ08_03520 cytochrome C552 K03740 dltD; D-alanine transfer protein D DQ08_01840 membrane protein K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3] D DQ08_04465 transcriptional regulator K14983 ciaR; two-component system, OmpR family, response regulator CiaR D DQ08_08170 D-alanyl-D-alanine carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D DQ08_08265 D-alanyl-D-alanine carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D DQ08_07500 ATPase K18940 arlS; two-component system, OmpR family, sensor histidine kinase ArlS [EC:2.7.13.3] D DQ08_07505 PhoB family transcriptional regulator K18941 arlR; two-component system, OmpR family, response regulator ArlR D DQ08_01285 histidine kinase K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3] D DQ08_01265 lantibiotic ABC transporter ATP-binding protein K20490 nisF; lantibiotic transport system ATP-binding protein D DQ08_01270 lantibiotic ABC transporter permease K20491 nisE; lantibiotic transport system permease protein D DQ08_01275 hypothetical protein K20492 nisG; lantibiotic transport system permease protein D DQ08_01760 [citrate [pro-3S]-lyase] ligase K01910 citC; [citrate (pro-3S)-lyase] ligase [EC:6.2.1.22] D DQ08_01805 citrate lyase subunit gamma K01646 citD; citrate lyase subunit gamma (acyl carrier protein) D DQ08_01810 citrate lyase subunit beta K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34] D DQ08_01815 citrate lyase subunit alpha K01643 citF; citrate lyase subunit alpha / citrate CoA-transferase [EC:2.8.3.10] D DQ08_01820 ACP synthase K05964 citX; holo-ACP synthase [EC:2.7.7.61] D DQ08_01765 2-(5'-triphosphoribosyl)-3'-dephospho CoA synthase K05966 citG; triphosphoribosyl-dephospho-CoA synthase [EC:2.4.2.52] D DQ08_05125 malate dehydrogenase K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D DQ08_05130 malate permease K11616 maeN; malate:Na+ symporter D DQ08_01950 histidine kinase K07704 lytS; two-component system, LytTR family, sensor histidine kinase LytS [EC:2.7.13.3] D DQ08_01955 two-component response regulator K07705 lytT; two-component system, LytTR family, response regulator LytT D DQ08_01960 murein hydrolase transporter LrgA K05338 lrgA; holin-like protein D DQ08_01965 antiholin LrgB K05339 lrgB; holin-like protein LrgB D DQ08_09270 histidine kinase K07706 agrC; two-component system, LytTR family, sensor histidine kinase AgrC [EC:2.7.13.3] D DQ08_09265 histidine kinase K07706 agrC; two-component system, LytTR family, sensor histidine kinase AgrC [EC:2.7.13.3] D DQ08_09260 accessory gene regulator AgrA K07707 agrA; two-component system, LytTR family, response regulator AgrA D DQ08_07635 competence protein ComX K12296 comX1_2; competence protein ComX D DQ08_00055 beta-lactamase K01467 ampC; beta-lactamase class C [EC:3.5.2.6] D DQ08_01060 histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3] D DQ08_01065 transcriptional regulator K07693 desR; two-component system, NarL family, response regulator DesR D DQ08_07730 histidine kinase K11617 liaS; two-component system, NarL family, sensor histidine kinase LiaS [EC:2.7.13.3] D DQ08_07725 LuxR family transcriptional regulator K11618 liaR; two-component system, NarL family, response regulator LiaR D DQ08_08980 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D DQ08_09090 chemotaxis protein CheY K07719 glnL; two-component system, response regulator GlnL D DQ08_01600 histidine kinase K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3] D DQ08_02520 histidine kinase K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3] D DQ08_01605 transcriptional regulator K07720 yesN; two-component system, response regulator YesN D DQ08_02525 AraC family transcriptional regulator K07720 yesN; two-component system, response regulator YesN D DQ08_00665 cytochrome D ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D DQ08_00670 cytochrome C oxidase assembly protein K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D DQ08_00345 protein tyrosine phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48] C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:siq02024] D DQ08_07780 S-ribosylhomocysteinase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21] D DQ08_01300 anthranilate synthase subunit II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D DQ08_07205 branched-chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DQ08_07200 ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D DQ08_07195 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D DQ08_07190 branched-chain amino acid ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D DQ08_07185 amino acid ABC transporter ATPase K01996 livF; branched-chain amino acid transport system ATP-binding protein D DQ08_03370 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D DQ08_09270 histidine kinase K07706 agrC; two-component system, LytTR family, sensor histidine kinase AgrC [EC:2.7.13.3] D DQ08_09265 histidine kinase K07706 agrC; two-component system, LytTR family, sensor histidine kinase AgrC [EC:2.7.13.3] D DQ08_09260 accessory gene regulator AgrA K07707 agrA; two-component system, LytTR family, response regulator AgrA D DQ08_04465 transcriptional regulator K14983 ciaR; two-component system, OmpR family, response regulator CiaR D DQ08_08975 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D DQ08_02090 peptide ABC transporter ATP-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D DQ08_06360 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D DQ08_08970 peptide ABC transporter permease K15581 oppB; oligopeptide transport system permease protein D DQ08_02095 peptide ABC transporter permease K15581 oppB; oligopeptide transport system permease protein D DQ08_08965 peptide ABC transporter permease K15582 oppC; oligopeptide transport system permease protein D DQ08_02100 peptide ABC transporter permease K15582 oppC; oligopeptide transport system permease protein D DQ08_08960 peptide ABC transporter ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein D DQ08_08955 peptide ABC transporter substrate-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D DQ08_02110 peptide ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D DQ08_00335 Cro/Cl family transcriptional regulator K20342 comR; HTH-type transcriptional regulator, regulator for ComX D DQ08_07635 competence protein ComX K12296 comX1_2; competence protein ComX D DQ08_06825 transcriptional regulator K20373 rgg2; HTH-type transcriptional regulator, SHP2-responsive activator D DQ08_01205 MutR family transcriptional regulator K20373 rgg2; HTH-type transcriptional regulator, SHP2-responsive activator D DQ08_00280 tagatose-bisphosphate aldolase K01635 lacD; tagatose 1,6-diphosphate aldolase [EC:4.1.2.40] D DQ08_09240 membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D DQ08_07420 membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D DQ08_09680 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D DQ08_06800 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D DQ08_00485 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D DQ08_02260 accessory secretory protein SecY K03076 secY; preprotein translocase subunit SecY D DQ08_01435 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D DQ08_02280 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D DQ08_08455 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D DQ08_06555 cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor D DQ08_04795 signal recognition particle K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D DQ08_01285 histidine kinase K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3] D DQ08_01265 lantibiotic ABC transporter ATP-binding protein K20490 nisF; lantibiotic transport system ATP-binding protein D DQ08_01270 lantibiotic ABC transporter permease K20491 nisE; lantibiotic transport system permease protein D DQ08_01275 hypothetical protein K20492 nisG; lantibiotic transport system permease protein C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis D DQ08_02655 D-ribose transporter subunit RbsB K10439 rbsB; ribose transport system substrate-binding protein C 02040 Flagellar assembly [PATH:siq02040] D DQ08_04130 amino acid ABC transporter substrate-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein D DQ08_07570 amino acid ABC transporter substrate-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein D DQ08_05745 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D DQ08_05960 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:siq01501] D DQ08_03250 beta-hexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D DQ08_00055 beta-lactamase K01467 ampC; beta-lactamase class C [EC:3.5.2.6] D DQ08_08975 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D DQ08_02090 peptide ABC transporter ATP-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D DQ08_06360 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D DQ08_08970 peptide ABC transporter permease K15581 oppB; oligopeptide transport system permease protein D DQ08_02095 peptide ABC transporter permease K15581 oppB; oligopeptide transport system permease protein D DQ08_08965 peptide ABC transporter permease K15582 oppC; oligopeptide transport system permease protein D DQ08_02100 peptide ABC transporter permease K15582 oppC; oligopeptide transport system permease protein D DQ08_08960 peptide ABC transporter ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein D DQ08_08955 peptide ABC transporter substrate-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D DQ08_02110 peptide ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D DQ08_03005 D-Ala-D-Ala carboxypeptidase K17836 penP; beta-lactamase class A [EC:3.5.2.6] D DQ08_07815 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D DQ08_00715 transglycosylase K03693 pbp1b; penicillin-binding protein 1B D DQ08_02905 penicillin-binding protein K00687 pbp2B; penicillin-binding protein 2B D DQ08_07875 penicillin-binding protein K12556 pbp2X; penicillin-binding protein 2X C 01502 Vancomycin resistance [PATH:siq01502] D DQ08_02915 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D DQ08_08445 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D DQ08_02920 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D DQ08_07870 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D DQ08_02725 UDP-diphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D DQ08_08170 D-alanyl-D-alanine carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D DQ08_08265 D-alanyl-D-alanine carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:siq01503] D DQ08_10235 serine protease K04771 degP; serine protease Do [EC:3.4.21.107] D DQ08_06960 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D DQ08_03505 alanine-phosphoribitol ligase K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13] D DQ08_03510 D-alanyl-lipoteichoic acid biosynthesis protein K03739 dltB; membrane protein involved in D-alanine export D DQ08_03515 alanine-phosphoribitol ligase K14188 dltC; D-alanine--poly(phosphoribitol) ligase subunit 2 [EC:6.1.1.13] D DQ08_03520 cytochrome C552 K03740 dltD; D-alanine transfer protein D DQ08_01840 membrane protein K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:siq01000] C 01001 Protein kinases [BR:siq01001] D DQ08_07740 serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D DQ08_04745 protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D DQ08_08835 protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D DQ08_04030 tyrosine protein kinase K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3] D DQ08_06475 PhoR family transcriptional regulator K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D DQ08_06610 histidine kinase K07652 vicK; two-component system, OmpR family, sensor histidine kinase VicK [EC:2.7.13.3] D DQ08_10020 histidine kinase K10681 saeS; two-component system, OmpR family, sensor histidine kinase SaeS [EC:2.7.13.3] D DQ08_07500 ATPase K18940 arlS; two-component system, OmpR family, sensor histidine kinase ArlS [EC:2.7.13.3] D DQ08_01285 histidine kinase K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3] D DQ08_01060 histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3] D DQ08_07730 histidine kinase K11617 liaS; two-component system, NarL family, sensor histidine kinase LiaS [EC:2.7.13.3] D DQ08_05135 histidine kinase K02476 K02476; two-component system, CitB family, sensor kinase [EC:2.7.13.3] D DQ08_01950 histidine kinase K07704 lytS; two-component system, LytTR family, sensor histidine kinase LytS [EC:2.7.13.3] D DQ08_09270 histidine kinase K07706 agrC; two-component system, LytTR family, sensor histidine kinase AgrC [EC:2.7.13.3] D DQ08_09265 histidine kinase K07706 agrC; two-component system, LytTR family, sensor histidine kinase AgrC [EC:2.7.13.3] D DQ08_01600 histidine kinase K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3] D DQ08_02520 histidine kinase K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:siq01009] D DQ08_04235 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D DQ08_07745 protein phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16] D DQ08_05980 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 01002 Peptidases and inhibitors [BR:siq01002] D DQ08_05500 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36] D DQ08_06780 pyrrolidone-carboxylate peptidase K01304 pcp; pyroglutamyl-peptidase [EC:3.4.19.3] D DQ08_04820 GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D DQ08_09665 glutamine amidotransferase K07010 K07010; putative glutamine amidotransferase D DQ08_05065 gamma-glutamyl hydrolase K07010 K07010; putative glutamine amidotransferase D DQ08_00235 amidase K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D DQ08_04250 glucosamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D DQ08_04880 sortase K07284 srtA; sortase A [EC:3.4.22.70] D DQ08_06090 peptidase C69 K08659 pepDA; dipeptidase [EC:3.4.-.-] D DQ08_00790 CAAX protease K07052 K07052; CAAX protease family protein D DQ08_00985 CAAX protease K07052 K07052; CAAX protease family protein D DQ08_08500 abortive infection protein K07052 K07052; CAAX protease family protein D DQ08_03355 hypothetical protein K07052 K07052; CAAX protease family protein D DQ08_04460 aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D DQ08_03050 oligopeptidase PepB K08602 pepF; oligoendopeptidase F [EC:3.4.24.-] D DQ08_09805 endopeptidase K07386 pepO; putative endopeptidase [EC:3.4.24.-] D DQ08_08170 D-alanyl-D-alanine carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D DQ08_08265 D-alanyl-D-alanine carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D DQ08_03970 dipeptidase PepV K01274 pepV; beta-Ala-Xaa dipeptidase [EC:3.4.13.-] D DQ08_07560 peptidase M20 K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D DQ08_05645 peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4] D DQ08_09420 N-acetyldiaminopimelate deacetylase K05823 dapL; N-acetyldiaminopimelate deacetylase [EC:3.5.1.47] D DQ08_03265 methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D DQ08_06735 dipeptidase K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9] D DQ08_08510 X-Pro aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D DQ08_03455 aminopeptidase T K19689 ampS; aminopeptidase [EC:3.4.11.-] D DQ08_00070 cell division protein FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D DQ08_00800 glutamyl aminopeptidase K01261 pepA; glutamyl aminopeptidase [EC:3.4.11.7] D DQ08_01350 peptidase M42 K01269 yhfE; aminopeptidase [EC:3.4.11.-] D DQ08_07515 heat shock protein HtpX K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D DQ08_01450 metalloprotease RseP K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D DQ08_02480 hypothetical protein K04775 ydgD; protease YdgD [EC:3.4.21.-] D DQ08_10235 serine protease K04771 degP; serine protease Do [EC:3.4.21.107] D DQ08_07065 peptidase S8 K01361 E3.4.21.96; lactocepin [EC:3.4.21.96] D DQ08_04525 peptidase S8 K08652 C5AP; C5a peptidase [EC:3.4.21.110] D DQ08_02080 peptidase M15 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D DQ08_02085 peptidase M15 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D DQ08_07225 Clp protease K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D DQ08_08655 x-prolyl-dipeptidyl aminopeptidase K01281 pepX; X-Pro dipeptidyl-peptidase [EC:3.4.14.11] D DQ08_02625 peptidase S16 K07177 K07177; Lon-like protease D DQ08_04785 DNA-binding protein K01356 lexA; repressor LexA [EC:3.4.21.88] D DQ08_04245 signal peptidase K03100 lepB; signal peptidase I [EC:3.4.21.89] D DQ08_08600 signal peptidase K03100 lepB; signal peptidase I [EC:3.4.21.89] D DQ08_06370 protease K08303 prtC; U32 family peptidase [EC:3.4.-.-] C 01003 Glycosyltransferases [BR:siq01003] D DQ08_06720 1,2-diacylglycerol 3-glucosyltransferase K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337] D DQ08_09415 hyaluronan synthase K00752 hasA; hyaluronan synthase [EC:2.4.1.212] D DQ08_06725 glycosyl transferase family 1 K13677 dgs; 1,2-diacylglycerol-3-alpha-glucose alpha-1,2-glucosyltransferase [EC:2.4.1.208] D DQ08_05870 glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21] D DQ08_07815 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D DQ08_00715 transglycosylase K03693 pbp1b; penicillin-binding protein 1B D DQ08_02285 glycosyl transferase family 4 K00712 tagE; poly(glycerol-phosphate) alpha-glucosyltransferase [EC:2.4.1.52] D DQ08_02035 UDP-N-acetylglucosamine:UDP-P N-acetylglucosaminyl-1-P transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 01005 Lipopolysaccharide biosynthesis proteins [BR:siq01005] D DQ08_05725 glycosyl transferase K12996 rgpA; rhamnosyltransferase [EC:2.4.1.-] D DQ08_05720 alpha-L-Rha alpha-1,3-L-rhamnosyltransferase K12997 rgpB; rhamnosyltransferase [EC:2.4.1.-] D DQ08_02035 UDP-N-acetylglucosamine:UDP-P N-acetylglucosaminyl-1-P transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D DQ08_06760 bactoprenol glucosyl transferase K12999 rgpI; glucosyltransferase [EC:2.4.1.-] D DQ08_04040 capsular biosynthesis protein K13012 wbqP; O-antigen biosynthesis protein WbqP C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:siq01011] D DQ08_03200 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D DQ08_05820 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D DQ08_05170 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D DQ08_07440 UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D DQ08_02720 murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D DQ08_07240 UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase K05362 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [EC:6.3.2.7] D DQ08_02915 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D DQ08_00640 UDP-N-acetylmuramoylpentapeptide-lysine N(6)-alanyltransferase K05363 murM; serine/alanine adding enzyme [EC:2.3.2.10] D DQ08_06195 UDP-N-acetylmuramoylpentapeptide-lysine N(6)-alanyltransferase K05363 murM; serine/alanine adding enzyme [EC:2.3.2.10] D DQ08_06200 peptidoglycan branched peptide synthesis protein K12554 murN; alanine adding enzyme [EC:2.3.2.-] D DQ08_08445 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D DQ08_07385 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D DQ08_07870 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D DQ08_02725 UDP-diphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D DQ08_02025 UDP pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D DQ08_07330 phosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D DQ08_07815 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D DQ08_00715 transglycosylase K03693 pbp1b; penicillin-binding protein 1B D DQ08_02905 penicillin-binding protein K00687 pbp2B; penicillin-binding protein 2B D DQ08_07875 penicillin-binding protein K12556 pbp2X; penicillin-binding protein 2X D DQ08_02080 peptidase M15 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D DQ08_02085 peptidase M15 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D DQ08_08170 D-alanyl-D-alanine carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D DQ08_08265 D-alanyl-D-alanine carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D DQ08_00235 amidase K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D DQ08_04880 sortase K07284 srtA; sortase A [EC:3.4.22.70] D DQ08_07430 aminodeoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] C 01004 Lipid biosynthesis proteins [BR:siq01004] D DQ08_08210 ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D DQ08_08225 3-oxoacyl-ACP synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D DQ08_08200 3-oxoacyl-ACP synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D DQ08_07010 fabG; 3-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D DQ08_08205 3-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D DQ08_08190 hydroxymyristoyl-ACP dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D DQ08_08215 2-nitropropane dioxygenase K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9] D DQ08_08235 enoyl-CoA hydratase K18474 fabM; trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:5.3.3.14] D DQ08_03370 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D DQ08_00255 phosphate acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D DQ08_04150 glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D DQ08_02980 acyl-phosphate glycerol 3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins C 01006 Prenyltransferases [BR:siq01006] D DQ08_02820 geranyl transferase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D DQ08_01440 UDP pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D DQ08_03615 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D DQ08_00655 1,4-dihydroxy-2-naphthoate prenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] C 01007 Amino acid related enzymes [BR:siq01007] D DQ08_09290 glutamyl-tRNA synthetase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24] D DQ08_00710 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D DQ08_10190 tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D DQ08_01520 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D DQ08_09965 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D DQ08_07045 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D DQ08_02770 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D DQ08_02445 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D DQ08_09635 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D DQ08_06280 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D DQ08_09985 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D DQ08_06115 asnC; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D DQ08_09990 histidyl-tRNA synthase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D DQ08_07965 glyQ; glycyl-tRNA ligase K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D DQ08_07960 glycyl-tRNA synthase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D DQ08_08165 serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D DQ08_01455 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D DQ08_06715 threonyl-tRNA synthase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D DQ08_03075 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D DQ08_05805 pheS; phenylalanine--tRNA ligase K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D DQ08_05795 phenylalanyl-tRNA synthase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D DQ08_08355 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D DQ08_03095 aspartate aminotransferase K08969 mtnE; L-glutamine---4-(methylsulfanyl)-2-oxobutanoate aminotransferase [EC:2.6.1.117] D DQ08_00245 aromatic amino acid aminotransferase K00841 patA; aminotransferase [EC:2.6.1.-] D DQ08_06045 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D DQ08_04175 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D DQ08_01305 aminobenzoate synthetase K03342 pabBC; para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase [EC:2.6.1.85 4.1.3.38] D DQ08_07145 MFS transporter K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins [BR:siq00194] D DQ08_05830 ATP synthase F0F1 subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D DQ08_05835 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D DQ08_05840 ATP synthase F0F1 subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D DQ08_05845 ATP F0F1 synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D DQ08_05850 ATP synthase F0F1 subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D DQ08_05855 ATP synthase F0F1 subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b D DQ08_05865 ATP F0F1 synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c D DQ08_05860 ATP synthase F0F1 subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:siq03000] D DQ08_02495 modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D DQ08_05420 DeoR faimly transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor D DQ08_08320 hypothetical protein K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator D DQ08_01410 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D DQ08_02630 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D DQ08_06730 catabolite control protein A K02529 galR; LacI family transcriptional regulator, galactose operon repressor D DQ08_03575 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D DQ08_09595 LacI family transcriptional regulator K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor D DQ08_01040 transcriptional regulator K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor D DQ08_08480 LacI family transcriptional regulator K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor D DQ08_09845 GntR family transcriptional regulator K03486 treR2; GntR family transcriptional regulator, trehalose operon transcriptional repressor D DQ08_04805 GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D DQ08_00270 GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D DQ08_00285 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator D DQ08_03215 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D DQ08_02410 MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D DQ08_09375 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D DQ08_08985 MerR family transcriptional regulator K03713 glnR; MerR family transcriptional regulator, glutamine synthetase repressor D DQ08_09515 Fur family transcriptional regulator K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator D DQ08_02565 ArcR family transcriptional regulator K21828 arcR; CRP/FNR family transcriptional regulator, arginine deiminase pathway regulator D DQ08_01490 Crp/Fnr family transcriptional regulator K16326 yeiL; CRP/FNR family transcriptional regulator, putaive post-exponential-phase nitrogen-starvation regulator D DQ08_07085 ArsR family transcriptional regulator K26993 sdpR; ArsR family transcriptional regulator, repressor of sdpIR and other operons D DQ08_01755 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator D DQ08_06980 MarR family transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D DQ08_03185 GntR family transcriptional regulator K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D DQ08_02490 Cro/Cl family transcriptional regulator K18830 pezA; HTH-type transcriptional regulator / antitoxin PezA D DQ08_00335 Cro/Cl family transcriptional regulator K20342 comR; HTH-type transcriptional regulator, regulator for ComX D DQ08_06825 transcriptional regulator K20373 rgg2; HTH-type transcriptional regulator, SHP2-responsive activator D DQ08_01205 MutR family transcriptional regulator K20373 rgg2; HTH-type transcriptional regulator, SHP2-responsive activator D DQ08_09040 purine operon repressor K09685 purR; HTH-type transcriptional regulator, purine operon repressor D DQ08_05060 Rex family transcripional regulator K01926 rex; redox-sensing transcriptional repressor D DQ08_08350 transcriptional repressor CodY K03706 codY; transcriptional pleiotropic repressor D DQ08_00780 transcriptional regulator K07729 K07729; putative transcriptional regulator D DQ08_05110 transcription antiterminator BglG K03488 licT; beta-glucoside operon transcriptional antiterminator D DQ08_04260 phosphotransferase K03483 mtlR; mannitol operon transcriptional activator D DQ08_06535 transcription antiterminator BglG K03491 licR; probable licABCH operon transcriptional regulator D DQ08_10240 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D DQ08_09960 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism D DQ08_02560 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism D DQ08_02830 ArgR family transcriptional regulator K03402 argR; transcriptional regulator of arginine metabolism D DQ08_08255 HrcA family transcriptional regulator K03705 hrcA; heat-inducible transcriptional repressor D DQ08_09740 CtsR family transcriptional regulator K03708 ctsR; transcriptional regulator of stress and heat shock response D DQ08_05490 phosphoribosyl transferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D DQ08_07495 NrdR family transcriptional regulator K07738 nrdR; transcriptional repressor NrdR D DQ08_07635 competence protein ComX K12296 comX1_2; competence protein ComX C 03021 Transcription machinery [BR:siq03021] D DQ08_00515 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D DQ08_00720 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D DQ08_00725 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D DQ08_01940 DNA-directed RNA polymerase subunit delta K03048 rpoE; DNA-directed RNA polymerase subunit delta D DQ08_07765 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D DQ08_05745 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D DQ08_08040 transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA D DQ08_09675 antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG D DQ08_07425 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA C 03019 Messenger RNA biogenesis [BR:siq03019] D DQ08_06600 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D DQ08_08950 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-] D DQ08_03745 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-] D DQ08_07775 ribonuclease K18682 rny; ribonucrease Y [EC:3.1.-.-] D DQ08_06795 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D DQ08_09045 3'-5' exonuclease K03698 cbf; 3'-5' exoribonuclease [EC:3.1.-.-] D DQ08_02960 RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D DQ08_07865 DEAD/DEAH box helicase K18692 cshB; ATP-dependent RNA helicase CshB [EC:5.6.2.7] D DQ08_05960 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D DQ08_01505 polynucleotide phosphorylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D DQ08_04235 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D DQ08_08245 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D DQ08_09725 groEL; molecular chaperone GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D DQ08_06105 ATPase P K06958 rapZ; RNase adapter protein RapZ C 03041 Spliceosome C 03011 Ribosome [BR:siq03011] D DQ08_04195 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D DQ08_09785 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D DQ08_00415 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D DQ08_10075 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D DQ08_00470 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D DQ08_08555 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D DQ08_09025 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D DQ08_00455 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D DQ08_01675 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D DQ08_07455 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D DQ08_00380 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D DQ08_00510 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D DQ08_09030 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D DQ08_00505 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D DQ08_00450 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D DQ08_08920 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D DQ08_01500 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D DQ08_05460 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D DQ08_00430 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D DQ08_08545 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D DQ08_00405 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D DQ08_04475 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D DQ08_05760 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D DQ08_06935 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D DQ08_00400 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D DQ08_00385 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D DQ08_00390 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D DQ08_00445 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D DQ08_00460 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D DQ08_10090 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D DQ08_05245 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D DQ08_06940 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D DQ08_05240 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D DQ08_01670 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D DQ08_07460 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D DQ08_00435 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D DQ08_00480 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D DQ08_00420 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D DQ08_00520 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D DQ08_00465 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D DQ08_06015 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D DQ08_05610 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D DQ08_05520 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D DQ08_00410 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D DQ08_00395 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D DQ08_00440 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D DQ08_05510 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D DQ08_01990 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D DQ08_00425 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D DQ08_00475 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D DQ08_06080 50S ribosomal protein L31 type B K02909 RP-L31; large subunit ribosomal protein L31 D DQ08_09995 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D DQ08_09195 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D DQ08_05615 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D DQ08_00135 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D DQ08_02140 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D DQ08_01885 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D DQ08_07650 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D DQ08_07665 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D DQ08_01870 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D DQ08_00120 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D DQ08_02125 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D DQ08_00130 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D DQ08_02135 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D DQ08_07655 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D DQ08_01880 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:siq03009] D DQ08_06600 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D DQ08_06875 era; GTPase Era K03595 era; GTPase D DQ08_03465 obgE; GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-] D DQ08_08040 transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA D DQ08_09675 antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG D DQ08_03025 16S rRNA pseudouridylate synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D DQ08_03435 pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D DQ08_09095 16S rRNA methyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D DQ08_07750 16S rRNA methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D DQ08_04485 methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D DQ08_02615 rRNA methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D DQ08_01325 16S rRNA methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D DQ08_07525 16S rRNA methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D DQ08_07885 16S rRNA methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D DQ08_07155 16S rRNA methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D DQ08_02825 cell division protein FtsJ K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D DQ08_01640 rRNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D DQ08_10225 rRNA methyltransferase K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D DQ08_05600 SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D DQ08_02670 ribosomal RNA large subunit methyltransferase N K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D DQ08_03290 RNA methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D DQ08_07350 pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D DQ08_09700 pseudouridylate synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D DQ08_05495 pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D DQ08_05020 pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D DQ08_08930 alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D DQ08_03825 GNAT family acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D DQ08_05445 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM D DQ08_01320 ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] D DQ08_09900 Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D DQ08_01525 Mini-ribonuclease 3 K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-] D DQ08_02960 RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D DQ08_07865 DEAD/DEAH box helicase K18692 cshB; ATP-dependent RNA helicase CshB [EC:5.6.2.7] D DQ08_09065 ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D DQ08_07480 engA; GTP-binding protein Der K03977 engA; GTPase D DQ08_04635 rbgA; GTPase K14540 rbgA; ribosome biogenesis GTPase A D DQ08_03620 GTP-binding protein HflX K03665 hflX; GTPase D DQ08_07625 GTPase K06948 yqeH; 30S ribosome assembly GTPase D DQ08_04920 tRNA threonylcarbamoyl adenosine modification protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D DQ08_01365 GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D DQ08_08020 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A D DQ08_08045 ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP D DQ08_10170 hypothetical protein K14761 rlbA; ribosome-associated protein D DQ08_07605 ribosomal silencing factor RsfS K09710 ybeB; ribosome-associated protein D DQ08_06885 metalloprotease K07042 ybeY; probable rRNA maturation factor D DQ08_07620 RNA-binding protein K07574 yhbY; RNA-binding protein D DQ08_07680 ribosome-associated factor Y K05808 hpf; ribosome hibernation promoting factor D DQ08_00020 GTP-binding protein K06942 ychF; ribosome-binding ATPase D DQ08_07510 DNA-binding protein K07040 yceD; DUF177 domain-containing protein C 03016 Transfer RNA biogenesis [BR:siq03016] D DQ08_03630 ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11] D DQ08_05370 tRNA CCA-pyrophosphorylase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] D DQ08_01455 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D DQ08_02770 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D DQ08_09635 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D DQ08_07045 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D DQ08_09965 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D DQ08_06280 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D DQ08_09985 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D DQ08_03075 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D DQ08_06115 asnC; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D DQ08_06715 threonyl-tRNA synthase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D DQ08_08165 serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D DQ08_01520 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D DQ08_02445 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D DQ08_09990 histidyl-tRNA synthase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D DQ08_05805 pheS; phenylalanine--tRNA ligase K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D DQ08_05795 phenylalanyl-tRNA synthase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D DQ08_00710 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D DQ08_10190 tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D DQ08_01370 tyrosyl-tRNA deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D DQ08_08100 histidine triad protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D DQ08_08080 tRNA (guanine-N7)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D DQ08_01905 pseudouridine synthase K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D DQ08_04405 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D DQ08_05565 aminotransferase V K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D DQ08_05045 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D DQ08_04920 tRNA threonylcarbamoyl adenosine modification protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D DQ08_03615 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D DQ08_03975 tRNA modification GTPase MnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D DQ08_10100 tRNA uridine 5-carboxymethylaminomethyl modification protein K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D DQ08_09245 rnpA; ribonuclease P K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D DQ08_10245 bacterial RNase P K01978 rnpB; M1 RNA D DQ08_07965 glyQ; glycyl-tRNA ligase K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D DQ08_07960 glycyl-tRNA synthase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D DQ08_09290 glutamyl-tRNA synthetase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24] D DQ08_06260 prolyl-tRNA synthetase K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-] D DQ08_09480 deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D DQ08_00855 hypothetical protein K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D DQ08_04685 tRNA (uracil-5-)-methyltransferase K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74] D DQ08_05440 tRNA (guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D DQ08_03665 SAM-dependent methyltransferase K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217] D DQ08_07340 RNA methyltransferase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] D DQ08_07410 23S rRNA methyltransferase K03437 spoU; RNA methyltransferase, TrmH family D DQ08_10110 thiouridylase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D DQ08_03015 S-adenosylmethionine tRNA ribosyltransferase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D DQ08_06150 epoxyqueuosine reductase K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6] D DQ08_09360 hypothetical protein K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6] D DQ08_09505 tgt; queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D DQ08_05560 thiamine biosynthesis protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D DQ08_00060 tRNA(Ile)-lysidine synthase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D DQ08_08935 peptidase M22 K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D DQ08_08925 tRNA threonylcarbamoyladenosine biosynthesis protein Gcp K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D DQ08_08120 hydrolase K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D DQ08_07590 hypothetical protein K27343 tmcAL; tRNA(Met) cytidine acetate ligase [EC:6.3.4.-] D DQ08_06795 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D DQ08_01505 polynucleotide phosphorylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:siq03012] D DQ08_08025 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D DQ08_05620 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D DQ08_03760 multidrug ABC transporter ATP-binding protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 D DQ08_09790 elongation factor Ts K02357 tsf; elongation factor Ts D DQ08_06210 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D DQ08_09020 fusA; elongation factor G K02355 fusA; elongation factor G D DQ08_04930 peptide chain release factor 1 K02835 prfA; peptide chain release factor 1 D DQ08_06925 ribosome-recycling factor K02838 frr; ribosome recycling factor D DQ08_04925 SAM-dependent methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D DQ08_00025 peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D DQ08_00500 translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D DQ08_08495 elongation factor P K02356 efp; elongation factor P D DQ08_06145 peptide chain release factor 2 K02836 prfB; peptide chain release factor 2 D DQ08_02935 peptide chain release factor 3 K02837 prfC; peptide chain release factor 3 C 03110 Chaperones and folding catalysts [BR:siq03110] D DQ08_09735 Clp protease ClpX K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC D DQ08_02785 Clp protease ClpX K03697 clpE; ATP-dependent Clp protease ATP-binding subunit ClpE D DQ08_05275 ATP-dependent protease K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D DQ08_08245 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D DQ08_09725 groEL; molecular chaperone GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D DQ08_08240 molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ D DQ08_00860 molecular chaperone Hsp33 K04083 hslO; molecular chaperone Hsp33 D DQ08_08250 heat shock protein GrpE K03687 GRPE; molecular chaperone GrpE D DQ08_09730 molecular chaperone GroES K04078 groES; chaperonin GroES D DQ08_10235 serine protease K04771 degP; serine protease Do [EC:3.4.21.107] D DQ08_00070 cell division protein FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D DQ08_05860 ATP synthase F0F1 subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a D DQ08_07065 peptidase S8 K01361 E3.4.21.96; lactocepin [EC:3.4.21.96] D DQ08_04525 peptidase S8 K08652 C5AP; C5a peptidase [EC:3.4.21.110] D DQ08_01575 N-acetyl-beta-D-glucosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D DQ08_06960 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D DQ08_07720 peptidylprolyl isomerase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] D DQ08_03070 foldase K07533 prsA; foldase protein PrsA [EC:5.2.1.8] D DQ08_08575 thioredoxin K03671 TXN; thioredoxin C 04131 Membrane trafficking [BR:siq04131] D DQ08_03895 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D DQ08_01565 alpha-mannosidase K01191 MAN2C1; alpha-mannosidase [EC:3.2.1.24] D DQ08_09015 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D DQ08_02885 phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D DQ08_04240 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] C 04121 Ubiquitin system C 03051 Proteasome C 03032 DNA replication proteins [BR:siq03032] D DQ08_02495 modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D DQ08_02865 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D DQ08_00005 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D DQ08_10085 DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D DQ08_05750 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D DQ08_07490 helicase loader K03346 dnaB; replication initiation and membrane attachment protein D DQ08_07485 primosomal protein DnaI K11144 dnaI; primosomal protein DnaI D DQ08_00825 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D DQ08_08550 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D DQ08_04230 dnaE; DNA polymerase III DnaE K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D DQ08_01470 polC; DNA polymerase III PolC K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D DQ08_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D DQ08_02995 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D DQ08_07170 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D DQ08_08905 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D DQ08_03175 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DQ08_04640 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D DQ08_08595 ribonuclease HIII K03471 rnhC; ribonuclease HIII [EC:3.1.26.4] D DQ08_09525 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D DQ08_05900 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DQ08_02455 DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D DQ08_04885 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D DQ08_05990 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D DQ08_04165 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D DQ08_04155 gyrB; DNA gyrase subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D DQ08_04655 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:siq03036] D DQ08_02495 modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D DQ08_06600 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D DQ08_02865 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D DQ08_00005 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D DQ08_06595 chromosome segregation protein SMC K03529 smc; chromosome segregation protein D DQ08_07360 scpA; segregation and condensation protein A K05896 scpA; segregation and condensation protein A D DQ08_07355 segregation protein A K06024 scpB; segregation and condensation protein B D DQ08_02735 cell division protein FtsA K03590 ftsA; cell division protein FtsA D DQ08_00045 septum formation initiation protein K13052 divIC; cell division protein DivIC D DQ08_06140 cell division protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D DQ08_06955 cell division protein FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D DQ08_08725 cell division protein FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D DQ08_07880 cell division protein FtsL K03586 ftsL; cell division protein FtsL D DQ08_02730 cell division protein K03589 ftsQ; cell division protein FtsQ D DQ08_06225 cell division protein FtsW K03588 ftsW; cell division protein FtsW D DQ08_06135 cell division protein FtsX K09811 ftsX; cell division transport system permease protein D DQ08_02740 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D DQ08_05985 septation ring formation regulator EzrA K06286 ezrA; septation ring formation regulator D DQ08_02765 cell division protein DivIVA K04074 divIVA; cell division initiation protein D DQ08_02750 cell division protein SepF K09772 sepF; cell division inhibitor SepF D DQ08_00225 rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC D DQ08_00230 rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD D DQ08_06000 rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA D DQ08_10240 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D DQ08_04165 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D DQ08_04155 gyrB; DNA gyrase subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D DQ08_10100 tRNA uridine 5-carboxymethylaminomethyl modification protein K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D DQ08_07525 16S rRNA methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D DQ08_04685 tRNA (uracil-5-)-methyltransferase K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74] D DQ08_07365 recombinase XerD K04763 xerD; integrase/recombinase XerD D DQ08_05270 engB; GTP-binding protein K03978 engB; GTP-binding protein D DQ08_06095 sporulation protein K09762 whiA; cell division protein WhiA C 03400 DNA repair and recombination proteins [BR:siq03400] D DQ08_07130 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D DQ08_09555 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D DQ08_04140 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D DQ08_08565 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D DQ08_03655 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D DQ08_03710 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DQ08_02780 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DQ08_09310 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D DQ08_09930 3-methyladenine DNA glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D DQ08_06820 5-hydroxymethyluracil DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D DQ08_07095 exodeoxyribonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D DQ08_03640 single-stranded DNA exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DQ08_05900 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DQ08_09525 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D DQ08_08515 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D DQ08_03495 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D DQ08_04315 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D DQ08_00720 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D DQ08_00725 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D DQ08_00515 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D DQ08_01940 DNA-directed RNA polymerase subunit delta K03048 rpoE; DNA-directed RNA polymerase subunit delta D DQ08_07765 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D DQ08_00030 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D DQ08_09950 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D DQ08_08580 DNA mismatch repair protein MutS K07456 mutS2; DNA mismatch repair protein MutS2 D DQ08_09945 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D DQ08_02810 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D DQ08_02815 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DQ08_04230 dnaE; DNA polymerase III DnaE K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D DQ08_01470 polC; DNA polymerase III PolC K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D DQ08_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D DQ08_02995 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D DQ08_07170 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D DQ08_08905 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D DQ08_03175 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DQ08_00825 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D DQ08_08550 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D DQ08_02455 DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D DQ08_08605 exodeoxyribonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D DQ08_09920 recombinase RecA K03553 recA; recombination protein RecA D DQ08_09935 ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D DQ08_00340 ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D DQ08_07760 primosomal protein DnaI K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D DQ08_09305 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms D DQ08_10175 recombinase RecF K03629 recF; DNA replication and repair protein RecF D DQ08_08390 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D DQ08_00250 DNA recombination protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D DQ08_02910 recombinase K06187 recR; recombination protein RecR D DQ08_02835 DNA recombination protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D DQ08_07810 Holliday junction resolvase K03700 recU; recombination protein U D DQ08_05765 ATP-dependent helicase/nuclease subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] D DQ08_05770 ATP-dependent helicase K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D DQ08_03875 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 D DQ08_06805 hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase D DQ08_04885 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D DQ08_05990 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D DQ08_04655 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D DQ08_02865 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D DQ08_08615 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D DQ08_04785 DNA-binding protein K01356 lexA; repressor LexA [EC:3.4.21.88] D DQ08_02195 recX; recombination regulator RecX K03565 recX; regulatory protein D DQ08_06125 ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D DQ08_03115 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D DQ08_06060 phosphoesterase K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] C 03029 Mitochondrial biogenesis [BR:siq03029] D DQ08_08025 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D DQ08_05620 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D DQ08_09790 elongation factor Ts K02357 tsf; elongation factor Ts D DQ08_06210 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D DQ08_09020 fusA; elongation factor G K02355 fusA; elongation factor G D DQ08_06875 era; GTPase Era K03595 era; GTPase D DQ08_00710 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D DQ08_09635 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D DQ08_09985 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D DQ08_09965 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D DQ08_08300 gatA; glutamyl-tRNA amidotransferase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D DQ08_08295 glutamyl-tRNA amidotransferase K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D DQ08_08305 glutamyl-tRNA amidotransferase K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D DQ08_00825 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D DQ08_08550 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D DQ08_08245 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D DQ08_08250 heat shock protein GrpE K03687 GRPE; molecular chaperone GrpE D DQ08_09725 groEL; molecular chaperone GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D DQ08_09730 molecular chaperone GroES K04078 groES; chaperonin GroES D DQ08_08240 molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ D DQ08_05565 aminotransferase V K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D DQ08_05045 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D DQ08_09240 membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D DQ08_07420 membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:siq02000] D DQ08_02680 multidrug ABC transporter ATP-binding protein K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump D DQ08_02685 multidrug ABC transporter ATP-binding protein K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump D DQ08_09370 multidrug ABC transporter ATP-binding protein K18891 patA; ATP-binding cassette, subfamily B, multidrug efflux pump D DQ08_09365 multidrug ABC transporter permease K18892 patB; ATP-binding cassette, subfamily B, multidrug efflux pump D DQ08_05350 multidrug ABC transporter ATP-binding protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump D DQ08_03450 multidrug ABC transporter ATP-binding protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump D DQ08_05345 multidrug ABC transporter ATPase K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump D DQ08_03445 sugar ABC transporter ATP-binding protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump D DQ08_05325 ABC transporter ATP-binding protein K18216 steA; ATP-binding cassette, subfamily B, tetracycline resistant protein D DQ08_05320 ABC transporter ATP-binding protein K18217 steB; ATP-binding cassette, subfamily B, tetracycline resistant protein D DQ08_01705 hypothetical protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D DQ08_00680 cysteine ABC transporter ATP-binding protein K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC D DQ08_00675 cysteine ABC transporter ATP-binding protein K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD D DQ08_08410 ABC transporter ATP-binding protein K06148 ABCC-BAC; ATP-binding cassette, subfamily C, bacterial D DQ08_08415 ABC transporter ATP-binding protein K06148 ABCC-BAC; ATP-binding cassette, subfamily C, bacterial D DQ08_05365 antibiotic ABC transporter ATP-binding protein K15738 uup; ABC transport system ATP-binding/permease protein D DQ08_02530 iron ABC transporter substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein D DQ08_02540 iron ABC transporter permease K02011 afuB; iron(III) transport system permease protein D DQ08_02535 peptide ABC transporter substrate-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D DQ08_05150 spermidine/putrescine ABC transporter substrate-binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein D DQ08_05155 spermidine/purescine ABC transporter permease K11070 potC; spermidine/putrescine transport system permease protein D DQ08_05160 spermidine/putrescine ABC transporter permease K11071 potB; spermidine/putrescine transport system permease protein D DQ08_05165 spermidine/putrescine ABC transporter ATP-binding protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D DQ08_09530 glycine/betaine ABC transporter permease K02001 proW; glycine betaine/proline transport system permease protein D DQ08_09535 glycine/betaine ABC transporter ATP-binding protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D DQ08_04990 glycine/betaine ABC transporter permease K05845 opuC; osmoprotectant transport system substrate-binding protein D DQ08_04995 glycine/betaine ABC transporter ATP-binding protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D DQ08_01390 sugar ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D DQ08_03525 sugar ABC transporter substrate-binding protein K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein D DQ08_03570 sugar ABC transporter substrate-binding protein K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein D DQ08_03540 sugar ABC transporter permease K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D DQ08_03565 sugar ABC transporter permease K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D DQ08_03545 sugar ABC transporter permease K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D DQ08_03560 sugar ABC transporter permease K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D DQ08_01590 sugar ABC transporter substrate-binding protein K17318 lplA; putative aldouronate transport system substrate-binding protein D DQ08_01580 sugar ABC transporter permease K17319 lplB; putative aldouronate transport system permease protein D DQ08_01585 sugar ABC transporter permease K17320 lplC; putative aldouronate transport system permease protein D DQ08_02655 D-ribose transporter subunit RbsB K10439 rbsB; ribose transport system substrate-binding protein D DQ08_02650 rbsC; ribose ABC transporter permease K10440 rbsC; ribose transport system permease protein D DQ08_02645 D-ribose transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D DQ08_04505 membrane protein K07335 bmpA; basic membrane protein A and related proteins D DQ08_04515 branched-chain amino acid ABC transporter permease K23535 nupB; general nucleoside transport system permease protein D DQ08_04520 sugar ABC transporter permease K23536 nupC; general nucleoside transport system permease protein D DQ08_04510 heme ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein D DQ08_03410 membrane protein K02069 STAR2; UDP-glucose/iron transport system permease protein D DQ08_03405 methionine ABC transporter ATP-binding protein K02068 STAR1; UDP-glucose/iron transport system ATP-binding protein D DQ08_09145 sugar ABC transporter substrate-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D DQ08_09185 sugar ABC transporter substrate-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D DQ08_02335 sugar ABC transporter substrate-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D DQ08_09155 sugar ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein D DQ08_09180 acetylneuraminate ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein D DQ08_02340 sugar ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein D DQ08_09150 sugar ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein D DQ08_09175 sugar ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein D DQ08_02345 sugar ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein D DQ08_04430 phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D DQ08_06470 phosphate ABC transporter substrate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D DQ08_04435 phosphate ABC transporter permease K02037 pstC; phosphate transport system permease protein D DQ08_06465 phosphate ABC transporter permease K02037 pstC; phosphate transport system permease protein D DQ08_04440 phosphate ABC transporter permease K02038 pstA; phosphate transport system permease protein D DQ08_06460 phosphate ABC transporter permease K02038 pstA; phosphate transport system permease protein D DQ08_04445 phosphate ABC transporter ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D DQ08_04450 phosphate ABC transporter ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D DQ08_06455 phosphate ABC transporter ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D DQ08_03490 amino acid ABC transporter permease K10036 glnH; glutamine transport system substrate-binding protein D DQ08_03485 peptide ABC transporter ATP-binding protein K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1] D DQ08_06625 glutamine ABC transporter substrate-binding protein K10039 peb1A; aspartate/glutamate/glutamine transport system substrate-binding protein D DQ08_06630 glutamine ABC transporter permease K10040 peb1B; aspartate/glutamate/glutamine transport system permease protein D DQ08_06635 glutamine ABC transporter permease K10040 peb1B; aspartate/glutamate/glutamine transport system permease protein D DQ08_06620 ABC transporter K10041 peb1C; aspartate/glutamate/glutamine transport system ATP-binding protein [EC:7.4.2.1] D DQ08_04130 amino acid ABC transporter substrate-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein D DQ08_07570 amino acid ABC transporter substrate-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein D DQ08_04135 amino acid ABC transporter permease K10009 tcyB; L-cystine transport system permease protein D DQ08_07860 amino acid ABC transporter permease K10009 tcyB; L-cystine transport system permease protein D DQ08_07855 amino acid ABC transporter ATP-binding protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1] D DQ08_06050 amino acid ABC transporter substrate-binding protein K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein D DQ08_02795 glutamine ABC transporter permease K17077 artQ; arginine/lysine/histidine transport system permease protein D DQ08_02800 glnQ; glutamine ABC transporter ATP-binding protein K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1] D DQ08_07205 branched-chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DQ08_07200 ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D DQ08_07195 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D DQ08_07190 branched-chain amino acid ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D DQ08_07185 amino acid ABC transporter ATPase K01996 livF; branched-chain amino acid transport system ATP-binding protein D DQ08_07565 O-sialoglycoprotein endopeptidase K02073 metQ; D-methionine transport system substrate-binding protein D DQ08_07550 methionine ABC transporter permease K02072 metI; D-methionine transport system permease protein D DQ08_07555 methionine ABC transporter ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein D DQ08_00830 ABC transporter substrate-binding protein K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein D DQ08_00835 ABC transporter substrate-binding protein K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein D DQ08_03730 peptide ABC transporter substrate-binding protein K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein D DQ08_00840 ABC transporter permease K05832 K05832; putative tryptophan/tyrosine transport system permease protein D DQ08_03735 branched-chain amino acid ABC transporter permease K05832 K05832; putative tryptophan/tyrosine transport system permease protein D DQ08_00845 ABC transporter ATP-binding protein K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein D DQ08_03740 phosphonate ABC transporter ATP-binding protein K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein D DQ08_02020 glutamine ABC transporter substrate-binding protein K17073 lysX1; putative lysine transport system substrate-binding protein D DQ08_02015 ABC transporter K17076 lysY; putative lysine transport system ATP-binding protein D DQ08_04290 amino acid ABC transporter substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D DQ08_04280 amino acid ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein D DQ08_04285 amino acid ABC transporter ATPase K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D DQ08_08975 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D DQ08_02090 peptide ABC transporter ATP-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D DQ08_06360 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D DQ08_08970 peptide ABC transporter permease K15581 oppB; oligopeptide transport system permease protein D DQ08_02095 peptide ABC transporter permease K15581 oppB; oligopeptide transport system permease protein D DQ08_08965 peptide ABC transporter permease K15582 oppC; oligopeptide transport system permease protein D DQ08_02100 peptide ABC transporter permease K15582 oppC; oligopeptide transport system permease protein D DQ08_08960 peptide ABC transporter ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein D DQ08_08955 peptide ABC transporter substrate-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D DQ08_02110 peptide ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D DQ08_07260 ferrichrome ABC transporter substrate-binding protein K25308 fhuD; ferric hydroxamate/heme transport system substrate-binding protein D DQ08_07265 ferrichrome ABC transporter permease K25288 fhuB; ferric hydroxamate/heme transport system permease protein D DQ08_07270 ferrichrome ABC transporter permease K25289 fhuG; ferric hydroxamate/heme transport system permease protein D DQ08_07255 iron ABC transporter ATP-binding protein K25290 fhuA; ferric hydroxamate/heme transport system ATP-binding protein [EC:7.2.2.16] D DQ08_08430 ABC transporter substrate-binding protein K25113 htsA; heme transport system substrate-binding protein D DQ08_08425 ABC transporter permease K25114 htsB; heme transport system permease protein D DQ08_08420 iron ABC transporter ATP-binding protein K25115 htsC; heme transport system ATP-binding protein [EC:7.6.2.5] D DQ08_08435 heme-binding protein K25119 shp; heme transport system cell surface heme-binding protein D DQ08_08440 amino acid ABC transporter substrate-binding protein K25120 shr; heme sequestration protein D DQ08_00970 adhesion protein K09815 znuA; zinc transport system substrate-binding protein D DQ08_06085 zinc-binding protein AdcA K09815 znuA; zinc transport system substrate-binding protein D DQ08_00705 zinc ABC transporter permease K09816 znuB; zinc transport system permease protein D DQ08_00700 zinc ABC transporter ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D DQ08_06975 manganese ABC transporter substrate-binding protein K11704 mtsA; iron/zinc/manganese/copper transport system substrate-binding protein D DQ08_06965 manganese ABC transporter substrate-binding protein K11705 mtsC; iron/zinc/manganese/copper transport system permease protein D DQ08_06970 manganese ABC transporter ATP-binding protein K11706 mtsB; iron/zinc/manganese/copper transport system ATP-binding protein D DQ08_09490 biotin biosynthesis protein BioY K03523 bioY; biotin transport system substrate-specific component D DQ08_01860 hypothetical protein K16924 mtsT; energy-coupling factor transport system substrate-specific component D DQ08_08405 membrane protein K16926 htsT; energy-coupling factor transport system substrate-specific component D DQ08_06245 membrane protein K16927 cbrT; energy-coupling factor transport system substrate-specific component D DQ08_01850 cobalt ABC transporter permease K16785 ecfT; energy-coupling factor transport system permease protein D DQ08_10135 cobalt ABC transporter permease K16785 ecfT; energy-coupling factor transport system permease protein D DQ08_08400 cobalamin biosynthesis protein CbiQ K16785 ecfT; energy-coupling factor transport system permease protein D DQ08_10145 cbiO; cobalt transporter ATP-binding subunit K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D DQ08_10140 cbiO; cobalt transporter ATP-binding subunit K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D DQ08_01855 heme ABC transporter ATP-binding protein K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D DQ08_08395 ABC transporter ATP-binding protein K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D DQ08_09225 multidrug ABC transporter permease K11051 cylB; multidrug/hemolysin transport system permease protein D DQ08_09230 ABC transporter ATP-binding protein K11050 cylA; multidrug/hemolysin transport system ATP-binding protein D DQ08_01270 lantibiotic ABC transporter permease K20491 nisE; lantibiotic transport system permease protein D DQ08_01275 hypothetical protein K20492 nisG; lantibiotic transport system permease protein D DQ08_01265 lantibiotic ABC transporter ATP-binding protein K20490 nisF; lantibiotic transport system ATP-binding protein D DQ08_01180 ABC transporter permease K09813 hrtB; hemin transport system permease protein D DQ08_01185 hemin ABC transporter ATP-binding protein K09814 hrtA; hemin transport system ATP-binding protein [EC:7.6.2.-] D DQ08_05920 ABC transporter ATP-binding protein K25142 lnrN; linearmycin/streptolysin S transport system permease protein D DQ08_05925 ABC transporter ATP-binding protein K25143 lnrM; linearmycin/streptolysin S transport system permease protein D DQ08_05930 ABC transporter ATP-binding protein K25144 lnrL; linearmycin/streptolysin S transport system ATP-binding protein D DQ08_04705 ABC transporter permease K19084 braE; bacitracin transport system permease protein D DQ08_04700 bacteriocin ABC transporter ATP-binding protein K19083 braD; bacitracin transport system ATP-binding protein D DQ08_07315 ABC transporter permease K25147 berB; beta-exotoxin I transport system permease protein D DQ08_00535 ABC transporter permease K25147 berB; beta-exotoxin I transport system permease protein D DQ08_07320 ABC transporter K25148 berA; beta-exotoxin I transport system ATP-binding protein D DQ08_05470 membrane protein K24948 yknZ; antimicrobial peptide resistance transport system permease protein D DQ08_06135 cell division protein FtsX K09811 ftsX; cell division transport system permease protein D DQ08_06140 cell division protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D DQ08_06695 multidrug ABC transporter permease K25154 evrC; viologen exporter family transport system permease protein D DQ08_06700 antibiotic ABC transporter permease K25155 evrB; viologen exporter family transport system permease protein D DQ08_06705 sugar ABC transporter ATP-binding protein K25156 evrA; viologen exporter family transport system ATP-binding protein D DQ08_08090 multidrug ABC transporter permease K25157 ecsB; ABC-2 type transport system permease protein D DQ08_08095 multidrug ABC transporter ATP-binding protein K25158 ecsA; ABC-2 type transport system ATP-binding protein D DQ08_01055 ABC transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D DQ08_07900 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D DQ08_05715 glycosyl transferase family 9 K01992 ABC-2.P; ABC-2 type transport system permease protein D DQ08_02390 sodium ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D DQ08_06840 hypothetical protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D DQ08_01050 multidrug ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D DQ08_04220 ABC transporter K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D DQ08_07905 3-dehydroquinate dehydratase K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D DQ08_05710 sugar ABC transporter ATPase K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D DQ08_02325 multidrug ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D DQ08_02395 sodium ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D DQ08_04385 peptide ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein D DQ08_05785 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein D DQ08_03335 bacteriocin-associated integral membrane protein K02004 ABC.CD.P; putative ABC transport system permease protein D DQ08_03340 peptide ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D DQ08_04365 macrolide ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D DQ08_05780 hemin ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D DQ08_06575 peptide ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D DQ08_02040 iron ABC transporter ATP-binding protein K09013 sufC; Fe-S cluster assembly ATP-binding protein D DQ08_00370 sodium:solute symporter K26937 dinF; MATE family, multidrug efflux pump D DQ08_02405 multidrug transporter MatE K26937 dinF; MATE family, multidrug efflux pump D DQ08_06900 glycerol-3-phosphate ABC transporter K02445 glpT; MFS transporter, OPA family, glycerol-3-phosphate transporter D DQ08_09940 MFS transporter K08152 lmrP; MFS transporter, DHA1 family, multidrug resistance protein B D DQ08_03140 phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D DQ08_03135 phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr D DQ08_01340 PTS system glucose/maltose-specific transporter subunit IIBCA K20108 malT; maltose PTS system EIICB or EIICBA component [EC:2.7.1.208] D DQ08_09315 PTS sugar transporter subunit IIA K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211] D DQ08_08470 PTS sucrose transporter subunit IIABC K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211] D DQ08_05105 PTS beta-glucoside transporter subunit IIABC K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-] D DQ08_05410 PTS fructose transporter subunit IIC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D DQ08_04265 PTS system mannitol-specific transporter subunit IIA K02798 cmtB; mannitol PTS system EIIA component [EC:2.7.1.197] D DQ08_04255 PTS mannitol transporter subunit IIB K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197] D DQ08_06525 PTS mannose transporter subunit IIA K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D DQ08_06530 PTS sugar transporter K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D DQ08_04625 PTS fructose transporter subunit IIA K02761 celB; cellobiose PTS system EIIC component D DQ08_06515 PTS cellobiose transporter subunit IIC K02761 celB; cellobiose PTS system EIIC component D DQ08_09580 PTS galactitol transporter subunit IIC K02775 gatC; galactitol PTS system EIIC component D DQ08_08140 PTS system mannost-specific transporter subunits IIAB K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191] D DQ08_00310 PTS fructose transporter subunit IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D DQ08_08145 PTS mannose transporter subunit IIC K02795 manY; mannose PTS system EIIC component D DQ08_00300 PTS fructose transporter subunit IIC K02795 manY; mannose PTS system EIIC component D DQ08_08150 PTS system mannose family transporter subunit IID K02796 manZ; mannose PTS system EIID component D DQ08_00305 PTS fructose transporter subunit IID K02796 manZ; mannose PTS system EIID component D DQ08_01010 PTS N-acetylgalactosamine transporter subunit IIA K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-] D DQ08_01020 PTS N-acetylgalactosamine transporter subunit IIB K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-] D DQ08_01025 PTS system N-acetylgalactosamine-specific transporter subunit IIC K02746 agaW; N-acetylgalactosamine PTS system EIIC component D DQ08_01030 PTS system N-acetylgalactosamine-specific transporter subunit IID K02747 agaE; N-acetylgalactosamine PTS system EIID component D DQ08_09615 PTS system ascorbate-specific transporter subunit IIA K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194] D DQ08_09620 PTS system ascorbate-specific transporter subunit IIB K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194] D DQ08_09825 PTS lactose transporter subunit IIB K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194] D DQ08_09625 PTS system ascorbate-specific transporter subunit IIC K03475 ulaA; ascorbate PTS system EIIC component D DQ08_09820 PTS ascorbate transporter subunit IIC K03475 ulaA; ascorbate PTS system EIIC component D DQ08_06650 PTS system mannnose-specific family transporter subunit IIA K05881 dhaM; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaM [EC:2.7.1.121] D DQ08_06645 glycerol transporter K02440 glpF; glycerol uptake facilitator D DQ08_07935 glycerol transporter K02440 glpF; glycerol uptake facilitator D DQ08_08650 glycerol ABC transporter permease K02440 glpF; glycerol uptake facilitator D DQ08_06285 ammonium transporter K03320 amt; ammonium transporter, Amt family D DQ08_02900 formate-nitrite transporter K21993 fdhC; formate transporter D DQ08_05755 mechanosensitive ion channel protein MscL K03282 mscL; large conductance mechanosensitive channel D DQ08_01925 mechanosensitive ion channel protein K22044 ybiO; moderate conductance mechanosensitive channel D DQ08_03440 magnesium transporter CorA K03284 corA; magnesium transporter D DQ08_08520 magnesium transporter K03284 corA; magnesium transporter D DQ08_07295 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D DQ08_01960 murein hydrolase transporter LrgA K05338 lrgA; holin-like protein D DQ08_10050 cation transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein D DQ08_03675 dihydroorotate dehydrogenase K07238 TC.ZIP; zinc transporter, ZIP family D DQ08_10180 sugar transporter K05340 glcU; glucose uptake protein D DQ08_07075 lactate permease K03303 lutP; lactate permease D DQ08_07540 serine/threonine protein kinase K07862 sstT; serine/threonine transporter D DQ08_09760 sodium:hydrogen antiporter K24163 nhaK; monovalent cation/hydrogen antiporter D DQ08_04825 sodium:proton antiporter K26730 napA; Na+:H+ antiporter D DQ08_07530 ATPase V K03498 trkH; trk/ktr system potassium uptake protein D DQ08_07535 potassium transporter Trk K03499 trkA; trk/ktr system potassium uptake protein D DQ08_05485 uracil permease K02824 uraA; uracil permease D DQ08_04975 xanthine permease K16169 pbuX; xanthine permease D DQ08_08125 guanine permease K06901 pbuG; adenine/guanine/hypoxanthine permease D DQ08_05115 ribonuclease HII K03281 clcA; chloride channel protein, CIC family D DQ08_03110 chloride channel protein K03281 clcA; chloride channel protein, CIC family D DQ08_06020 voltage-gated chloride channel protein K03281 clcA; chloride channel protein, CIC family D DQ08_02965 potassium transporter Kup K03549 kup; KUP system potassium uptake protein D DQ08_07335 membrane protein K23675 fmnP; riboflavin transporter D DQ08_06255 thiamine transporter K16789 thiT; thiamine transporter D DQ08_02895 membrane protein K16788 niaX; niacin transporter D DQ08_06225 cell division protein FtsW K03588 ftsW; cell division protein FtsW D DQ08_01795 glutaconyl-CoA decarboxylase subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D DQ08_01825 oxaloacetate decarboxylase K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2] D DQ08_01790 acetyl-CoA carboxylase K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma D DQ08_05480 ABC transporter substrate-binding protein K24950 yknX; membrane fusion protein, antimicrobial resistance system D DQ08_04030 tyrosine protein kinase K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3] D DQ08_04025 capsular biosynthesis protein CpsC K19420 epsA; protein tyrosine kinase modulator D DQ08_03475 nicotinamide mononucleotide transporter K03811 pnuC; nicotinamide mononucleotide transporter D DQ08_09890 iron transporter FeoA K04758 feoA; ferrous iron transport protein A D DQ08_09885 ferrous iron transporter B K04759 feoB; ferrous iron transport protein B C 02044 Secretion system [BR:siq02044] D DQ08_02755 membrane protein K02221 yggT; YggT family protein D DQ08_02985 competence protein ComEA K02237 comEA; competence protein ComEA D DQ08_08505 competence protein ComE K01493 comEB; dCMP deaminase [EC:3.5.4.12] D DQ08_02990 competence protein ComEC K02238 comEC; competence protein ComEC D DQ08_07690 competence protein K02240 comFA; competence protein ComFA D DQ08_07685 competence protein FC K02242 comFC; competence protein ComFC D DQ08_00735 competence protein CglA K02243 comGA; competence protein ComGA D DQ08_00740 competence protein CglB K02244 comGB; competence protein ComGB D DQ08_00745 competence protein ComG K02245 comGC; competence protein ComGC D DQ08_00750 competence protein K02246 comGD; competence protein ComGD D DQ08_00760 competence protein ComGF K02248 comGF; competence protein ComGF D DQ08_02280 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D DQ08_08455 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D DQ08_09680 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D DQ08_06800 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D DQ08_00485 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D DQ08_02260 accessory secretory protein SecY K03076 secY; preprotein translocase subunit SecY D DQ08_04795 signal recognition particle K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D DQ08_06555 cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor D DQ08_01435 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D DQ08_09240 membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D DQ08_07420 membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D DQ08_02265 accessory Sec system protein Asp1 K12268 asp1; accessory secretory protein Asp1 D DQ08_02270 accessory Sec system protein Asp2 K12269 asp2; accessory secretory protein Asp2 D DQ08_02275 accessory Sec system protein Asp3 K12270 asp3; accessory secretory protein Asp3 C 02042 Bacterial toxins [BR:siq02042] D DQ08_03605 C4-dicarboxylate ABC transporter K11041 eta; exfoliative toxin A/B D DQ08_07295 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D DQ08_04295 hypothetical protein K11045 cfa; cAMP factor D DQ08_05955 bacteriocin biosynthesis protein K11046 sagA; streptolysin S associated protein D DQ08_04615 hemolysin III K11068 hlyIII; hemolysin III C 02022 Two-component system [BR:siq02022] D DQ08_06475 PhoR family transcriptional regulator K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D DQ08_06480 chemotaxis protein CheY K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D DQ08_06610 histidine kinase K07652 vicK; two-component system, OmpR family, sensor histidine kinase VicK [EC:2.7.13.3] D DQ08_06615 PhoP family transcriptional regulator K07668 vicR; two-component system, OmpR family, response regulator VicR D DQ08_10020 histidine kinase K10681 saeS; two-component system, OmpR family, sensor histidine kinase SaeS [EC:2.7.13.3] D DQ08_10025 transcriptional regulator K10682 saeR; two-component system, OmpR family, response regulator SaeR D DQ08_04710 transcriptional regulator K19082 braR; two-component system, OmpR family, response regulator protein BraR/BceR D DQ08_04465 transcriptional regulator K14983 ciaR; two-component system, OmpR family, response regulator CiaR D DQ08_07500 ATPase K18940 arlS; two-component system, OmpR family, sensor histidine kinase ArlS [EC:2.7.13.3] D DQ08_07505 PhoB family transcriptional regulator K18941 arlR; two-component system, OmpR family, response regulator ArlR D DQ08_01285 histidine kinase K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3] D DQ08_01190 transcriptional regulator K02483 K02483; two-component system, OmpR family, response regulator D DQ08_01060 histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3] D DQ08_01065 transcriptional regulator K07693 desR; two-component system, NarL family, response regulator DesR D DQ08_07730 histidine kinase K11617 liaS; two-component system, NarL family, sensor histidine kinase LiaS [EC:2.7.13.3] D DQ08_07725 LuxR family transcriptional regulator K11618 liaR; two-component system, NarL family, response regulator LiaR D DQ08_05135 histidine kinase K02476 K02476; two-component system, CitB family, sensor kinase [EC:2.7.13.3] D DQ08_05140 chemotaxis protein CheY K02475 K02475; two-component system, CitB family, response regulator D DQ08_01950 histidine kinase K07704 lytS; two-component system, LytTR family, sensor histidine kinase LytS [EC:2.7.13.3] D DQ08_01955 two-component response regulator K07705 lytT; two-component system, LytTR family, response regulator LytT D DQ08_09270 histidine kinase K07706 agrC; two-component system, LytTR family, sensor histidine kinase AgrC [EC:2.7.13.3] D DQ08_09265 histidine kinase K07706 agrC; two-component system, LytTR family, sensor histidine kinase AgrC [EC:2.7.13.3] D DQ08_09260 accessory gene regulator AgrA K07707 agrA; two-component system, LytTR family, response regulator AgrA D DQ08_09090 chemotaxis protein CheY K07719 glnL; two-component system, response regulator GlnL D DQ08_01600 histidine kinase K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3] D DQ08_02520 histidine kinase K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3] D DQ08_01605 transcriptional regulator K07720 yesN; two-component system, response regulator YesN D DQ08_02525 AraC family transcriptional regulator K07720 yesN; two-component system, response regulator YesN C 02035 Bacterial motility proteins [BR:siq02035] D DQ08_04130 amino acid ABC transporter substrate-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein D DQ08_07570 amino acid ABC transporter substrate-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:siq04812] D DQ08_02740 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D DQ08_02735 cell division protein FtsA K03590 ftsA; cell division protein FtsA D DQ08_10240 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:siq04147] D DQ08_05960 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D DQ08_09015 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D DQ08_09000 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D DQ08_04240 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D DQ08_06960 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D DQ08_09725 groEL; molecular chaperone GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D DQ08_08245 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D DQ08_09430 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D DQ08_10185 inosine-5-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D DQ08_06210 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D DQ08_08100 histidine triad protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D DQ08_05580 L-2-hydroxyisocaproate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D DQ08_04890 lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D DQ08_03370 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D DQ08_00490 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D DQ08_03645 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D DQ08_09250 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D DQ08_09255 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D DQ08_01415 galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D DQ08_05885 glycogen branching protein K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D DQ08_07945 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D DQ08_08980 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D DQ08_07135 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D DQ08_03785 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DQ08_06205 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D DQ08_02885 phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] C 02048 Prokaryotic defense system [BR:siq02048] D DQ08_03875 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 D DQ08_03880 CRISPR-associated protein Cas2 K09951 cas2; CRISPR-associated protein Cas2 D DQ08_03855 CRISPR-associated protein Csn1 K09952 csn1; CRISPR-associated endonuclease Csn1 [EC:3.1.-.-] D DQ08_03885 CRISPR-associated protein Csn2 K19137 csn2; CRISPR-associated protein Csn2 D DQ08_02455 DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D DQ08_00770 adenine methyltransferase K00571 E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72] D DQ08_02495 modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D DQ08_02490 Cro/Cl family transcriptional regulator K18830 pezA; HTH-type transcriptional regulator / antitoxin PezA D DQ08_02740 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D DQ08_04165 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D DQ08_04155 gyrB; DNA gyrase subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D DQ08_05565 aminotransferase V K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D DQ08_05045 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules C 01504 Antimicrobial resistance genes [BR:siq01504] D DQ08_05325 ABC transporter ATP-binding protein K18216 steA; ATP-binding cassette, subfamily B, tetracycline resistant protein D DQ08_05320 ABC transporter ATP-binding protein K18217 steB; ATP-binding cassette, subfamily B, tetracycline resistant protein D DQ08_03005 D-Ala-D-Ala carboxypeptidase K17836 penP; beta-lactamase class A [EC:3.5.2.6] D DQ08_08170 D-alanyl-D-alanine carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D DQ08_08265 D-alanyl-D-alanine carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D DQ08_03505 alanine-phosphoribitol ligase K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13] D DQ08_03510 D-alanyl-lipoteichoic acid biosynthesis protein K03739 dltB; membrane protein involved in D-alanine export D DQ08_03515 alanine-phosphoribitol ligase K14188 dltC; D-alanine--poly(phosphoribitol) ligase subunit 2 [EC:6.1.1.13] D DQ08_03520 cytochrome C552 K03740 dltD; D-alanine transfer protein D DQ08_01840 membrane protein K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3] C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins [BR:siq00536] D DQ08_03240 beta-glucuronidase K07964 HPSE; heparanase [EC:3.2.1.166] C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:siq03100] D DQ08_00125 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D DQ08_07660 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D DQ08_01875 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D DQ08_02130 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D DQ08_00175 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D DQ08_01895 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D DQ08_07640 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D DQ08_06005 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D DQ08_10220 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D DQ08_04200 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D DQ08_01890 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D DQ08_07645 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D DQ08_10210 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D DQ08_00145 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D DQ08_02150 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D DQ08_09765 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D DQ08_04190 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D DQ08_02175 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D DQ08_10215 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D DQ08_00210 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D DQ08_00165 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D DQ08_00215 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D DQ08_02170 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D DQ08_00170 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D DQ08_01975 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D DQ08_00155 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D DQ08_02160 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D DQ08_00150 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D DQ08_02155 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D DQ08_01290 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D DQ08_00200 tRNA-Met K14230 tRNA-Met; tRNA Met D DQ08_00190 tRNA-Met K14230 tRNA-Met; tRNA Met D DQ08_00185 tRNA-Met K14230 tRNA-Met; tRNA Met D DQ08_00205 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D DQ08_00180 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D DQ08_00195 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D DQ08_07055 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D DQ08_00220 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D DQ08_08075 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D DQ08_00160 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D DQ08_02165 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D DQ08_02400 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D DQ08_04185 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D DQ08_00140 tRNA-Val K14237 tRNA-Val; tRNA Val D DQ08_02145 tRNA-Val K14237 tRNA-Val; tRNA Val D DQ08_07665 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D DQ08_01870 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D DQ08_00120 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D DQ08_02125 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D DQ08_00130 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D DQ08_02135 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D DQ08_07655 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D DQ08_01880 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D DQ08_00135 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D DQ08_02140 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D DQ08_01885 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D DQ08_07650 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D DQ08_10245 bacterial RNase P K01978 rnpB; M1 RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D DQ08_01005 gluconate 5-dehydrogenase K00046 idnO; gluconate 5-dehydrogenase [EC:1.1.1.69] D DQ08_07070 lactate oxidase K10530 lctO; L-lactate oxidase [EC:1.1.3.2] D DQ08_09780 NADH dehydrogenase K03387 ahpF; NADH-dependent peroxiredoxin subunit F [EC:1.8.1.-] D DQ08_06915 peptide methionine sulfoxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D DQ08_03910 peptide methionine sulfoxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] D DQ08_06040 S-transferase K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-] D DQ08_04355 thiol peroxidase K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D DQ08_09775 alkyl hydroperoxide reductase K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26] D DQ08_05435 ferredoxin-NADP reductase K21567 fnr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D DQ08_03990 arsenate reductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1] D DQ08_09855 ribonucleoside-triphosphate reductase activating protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4] D DQ08_00910 pyruvate formate lyase-activating protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D DQ08_07290 pflA; pyruvate formate lyase-activating enzyme 1 K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D DQ08_01105 glycyl radical-activating protein K20037 cutD; choline trimethylamine-lyase activating enzyme [EC:1.97.1.-] D DQ08_07790 N-6 DNA methylase K07444 ypsC; putative N6-adenine-specific DNA methylase [EC:2.1.1.-] D DQ08_05800 GNAT family acetyltransferase K22441 paiA; diamine N-acetyltransferase [EC:2.3.1.57] D DQ08_04645 galactoside O-acetyltransferase K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79] D DQ08_05355 acetyltransferase K03828 yjgM; putative acetyltransferase [EC:2.3.1.-] D DQ08_06785 glutamine cyclotransferase K22757 QCT; glutaminyl-peptide cyclotransferase [EC:2.3.2.5] D DQ08_06420 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D DQ08_04965 thiamine biosynthesis protein ApbE K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D DQ08_02000 hypothetical protein K07030 fakA; fatty acid kinase [EC:2.7.2.18] D DQ08_08315 phosphotransferase K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33] D DQ08_03810 membrane protein K18672 dacA; diadenylate cyclase [EC:2.7.7.85] D DQ08_06425 serine kinase K06023 hprK; HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-] D DQ08_03750 acetyl esterase K03930 estA; putative tributyrin esterase [EC:3.1.1.-] D DQ08_04020 tyrosine protein phosphatase K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48] D DQ08_07630 HAD family hydrolase K07015 yqeG; putative phosphatase [EC:3.1.3.-] D DQ08_10095 phosphoesterase K22927 gdpP; cyclic-di-AMP phosphodiesterase [EC:3.1.4.59] D DQ08_09105 hydrolase TatD K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D DQ08_09100 DNA primase K05985 rnmV; ribonuclease M5 [EC:3.1.26.8] D DQ08_01395 glucan 1,6-alpha-glucosidase K01215 dexB; glucan 1,6-alpha-glucosidase [EC:3.2.1.70] D DQ08_01015 glucuronyl hydrolase K18581 ugl; unsaturated chondroitin disaccharide hydrolase [EC:3.2.1.180] D DQ08_02065 D-alanyl-D-alanine carboxypeptidase K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4] D DQ08_01485 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D DQ08_05335 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D DQ08_03150 deacetylase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104] D DQ08_09655 endoribonuclease L-PSP K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] D DQ08_06905 hypothetical protein K10254 ohyA; oleate hydratase [EC:4.2.1.53] D DQ08_01045 hyaluronate lyase K01727 hysA; hyaluronate lyase [EC:4.2.2.1] D DQ08_01100 formate acetyltransferase K20038 cutC; choline trimethylamine-lyase [EC:4.3.99.4] D DQ08_06175 ATPase K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10] D DQ08_02870 metal ABC transporter ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21] C 99981 Carbohydrate metabolism D DQ08_07180 hypothetical protein K04767 acuB; acetoin utilization protein AcuB C 99982 Energy metabolism D DQ08_05635 ferredoxin K05337 fer; ferredoxin D DQ08_02055 nitrogen fixation protein NifU K04488 iscU; nitrogen fixation protein NifU and related proteins C 99983 Lipid metabolism D DQ08_05380 hypothetical protein K25232 fakB; fatty acid kinase fatty acid binding subunit D DQ08_02850 hypothetical protein K25232 fakB; fatty acid kinase fatty acid binding subunit C 99984 Nucleotide metabolism D DQ08_01355 ribonucleotide reductase K03647 nrdI; protein involved in ribonucleotide reduction D DQ08_05810 DNA-entry nuclease K15051 endA; DNA-entry nuclease D DQ08_08370 DNAse K15051 endA; DNA-entry nuclease C 99985 Amino acid metabolism D DQ08_01130 ethanolamine utilization protein EutJ K04024 eutJ; ethanolamine utilization protein EutJ D DQ08_01110 microcompartment protein K04031 eutS; ethanolamine utilization protein EutS D DQ08_04875 lyase K08234 yaeR; glyoxylase I family protein D DQ08_02745 cell division protein K06997 yggS; PLP dependent protein C 99986 Glycan metabolism C 99987 Cofactor metabolism C 99988 Secondary metabolism C 99999 Others D DQ08_03945 LuxR family transcriptional regulator K15977 K15977; putative oxidoreductase B B 09192 Unclassified: genetic information processing C 99973 Transcription D DQ08_09750 cold-shock protein K03704 cspA; cold shock protein D DQ08_07470 cold-shock protein K03704 cspA; cold shock protein D DQ08_04415 arsenate reductase K16509 spxA; regulatory protein spx D DQ08_09910 ArsR family transcriptional regulator K16509 spxA; regulatory protein spx D DQ08_06440 hypothetical protein K06959 tex; protein Tex C 99974 Translation D DQ08_07715 hypothetical protein K07570 GSP13; general stress protein 13 C 99975 Protein processing D DQ08_01930 tig; trigger factor K03545 tig; trigger factor D DQ08_06790 single-stranded DNA-binding protein K03664 smpB; SsrA-binding protein D DQ08_03130 glutaredoxin K06191 nrdH; glutaredoxin-like protein NrdH D DQ08_02030 adapter protein mecA K16511 mecA1_2; adapter protein MecA 1/2 C 99976 Replication and repair D DQ08_05070 hypothetical protein K03630 radC; DNA repair protein RadC D DQ08_09050 recombinase RmuC K09760 rmuC; DNA recombination protein RmuC D DQ08_02970 hypothetical protein K07461 K07461; putative endonuclease D DQ08_04650 DNA protecting protein DprA K04096 smf; DNA processing protein D DQ08_03650 DNA replication protein DnaD K02086 dnaD; DNA replication protein D DQ08_01295 recombinase RarA K07478 ycaJ; putative ATPase D DQ08_07830 integrase K07482 K07482; transposase, IS30 family D DQ08_04940 transposase K07482 K07482; transposase, IS30 family D DQ08_05175 transposase K07482 K07482; transposase, IS30 family D DQ08_00375 transposase K07482 K07482; transposase, IS30 family D DQ08_00540 transposase K07482 K07482; transposase, IS30 family D DQ08_05525 integrase K07482 K07482; transposase, IS30 family D DQ08_06945 transposase K07482 K07482; transposase, IS30 family D DQ08_07465 transposase K07482 K07482; transposase, IS30 family D DQ08_03040 transposase K07483 K07483; transposase D DQ08_09115 transposase K07483 K07483; transposase D DQ08_06675 transposase K07483 K07483; transposase D DQ08_00965 transposase K07483 K07483; transposase D DQ08_09205 transposase K07483 K07483; transposase D DQ08_01250 transposase K07483 K07483; transposase D DQ08_03865 transposase K07483 K07483; transposase D DQ08_09800 transposase K07483 K07483; transposase D DQ08_10000 transposase K07483 K07483; transposase D DQ08_01660 transposase K07483 K07483; transposase D DQ08_04380 transposase K07483 K07483; transposase D DQ08_05540 transposase K07483 K07483; transposase D DQ08_02070 transposase K07483 K07483; transposase D DQ08_04945 transposase K07483 K07483; transposase D DQ08_05230 transposase K07483 K07483; transposase D DQ08_08055 transposase K07483 K07483; transposase D DQ08_02505 transposase K07483 K07483; transposase D DQ08_06070 transposase K07483 K07483; transposase D DQ08_00090 transposase K07483 K07483; transposase D DQ08_00105 transposase K07483 K07483; transposase D DQ08_08815 transposase K07483 K07483; transposase D DQ08_00075 transposase K07486 K07486; transposase D DQ08_06710 transposase K07491 rayT; REP-associated tyrosine transposase D DQ08_09285 transposase K07491 rayT; REP-associated tyrosine transposase D DQ08_05395 transposase K07491 rayT; REP-associated tyrosine transposase D DQ08_05235 transposase K07491 rayT; REP-associated tyrosine transposase D DQ08_07920 transposase K07493 K07493; putative transposase D DQ08_04695 transposase K07493 K07493; putative transposase D DQ08_04740 transposase K07493 K07493; putative transposase D DQ08_04755 transposase K07493 K07493; putative transposase D DQ08_04865 transposase K07493 K07493; putative transposase D DQ08_08830 transposase K07493 K07493; putative transposase D DQ08_00525 transposase K07493 K07493; putative transposase D DQ08_01280 transposase K07493 K07493; putative transposase D DQ08_10230 transposase K07493 K07493; putative transposase D DQ08_06585 transposase K07493 K07493; putative transposase D DQ08_06685 transposase K07493 K07493; putative transposase D DQ08_06775 transposase K07493 K07493; putative transposase D DQ08_06845 transposase K07493 K07493; putative transposase D DQ08_03325 transposase K07493 K07493; putative transposase D DQ08_03330 transposase K07493 K07493; putative transposase D DQ08_00960 transposase K07497 K07497; putative transposase D DQ08_02510 transposase K07497 K07497; putative transposase D DQ08_03860 transposase K07497 K07497; putative transposase D DQ08_05545 transposase K07497 K07497; putative transposase D DQ08_06680 transposase K07497 K07497; putative transposase D DQ08_08810 transposase K07497 K07497; putative transposase D DQ08_04375 integrase K07497 K07497; putative transposase D DQ08_08065 hypothetical protein K07497 K07497; putative transposase D DQ08_00115 hypothetical protein K07497 K07497; putative transposase D DQ08_09120 integrase K07497 K07497; putative transposase D DQ08_05255 integrase K07497 K07497; putative transposase D DQ08_09795 integrase K07497 K07497; putative transposase D DQ08_10005 integrase K07497 K07497; putative transposase D DQ08_02075 transposase K07497 K07497; putative transposase D DQ08_04950 transposase K07497 K07497; putative transposase D DQ08_04970 transposase K07497 K07497; putative transposase D DQ08_05225 integrase K07497 K07497; putative transposase D DQ08_08060 integrase K07497 K07497; putative transposase D DQ08_00085 transposase K07497 K07497; putative transposase D DQ08_00585 integrase K07497 K07497; putative transposase D DQ08_09200 integrase K07497 K07497; putative transposase D DQ08_01655 integrase K07497 K07497; putative transposase D DQ08_02465 integrase K07497 K07497; putative transposase D DQ08_06065 integrase K07497 K07497; putative transposase D DQ08_06390 integrase K07497 K07497; putative transposase D DQ08_02845 integrase K07497 K07497; putative transposase D DQ08_03035 integrase K07497 K07497; putative transposase D DQ08_03310 integrase K07497 K07497; putative transposase D DQ08_07670 integrase K07497 K07497; putative transposase C 99979 Viral proteins C 99998 Others D DQ08_08885 hypothetical protein K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D DQ08_07840 amino acid transporter K03293 TC.AAT; amino acid transporter, AAT family D DQ08_00100 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D DQ08_01775 citrate transporter K03300 TC.CITMHS; citrate-Mg2+:H+ or citrate-Ca2+:H+ symporter, CitMHS family D DQ08_04840 peptide ABC transporter permease K03305 TC.POT; proton-dependent oligopeptide transporter, POT family D DQ08_04305 sodium:alanine symporter K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D DQ08_07040 branched-chain amino acid ABC transporter substrate-binding protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family D DQ08_07545 branched-chain amino acid transporter K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family C 99978 Cell growth D DQ08_07785 membrane protein K20073 mapZ; mid-cell-anchored protein Z D DQ08_09235 Jag protein K06346 jag; spoIIIJ-associated protein C 99993 Cell motility C 99995 Signaling proteins D DQ08_02705 GTP-binding protein TypA K06207 typA; GTP-binding protein D DQ08_08280 hypothetical protein K07166 K07166; ACT domain-containing protein D DQ08_06895 phosphate starvation-inducible protein PhoH K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins C 99992 Structural proteins D DQ08_06250 N-acetylmuramoyl-L-alanine amidase K07273 acm; lysozyme C 99994 Others D DQ08_04455 PhoU family transcriptional regulator K02039 phoU; phosphate transport system protein D DQ08_06450 PhoU family transcriptional regulator K02039 phoU; phosphate transport system protein D DQ08_07150 copper homeostasis protein CutC K06201 cutC; copper homeostasis protein D DQ08_07080 hemolysin expression modulating protein K26996 sdpI; immunity protein, SdpI family B B 09194 Poorly characterized C 99996 General function prediction only D DQ08_09865 oxidoreductase K03810 mviM; virulence factor D DQ08_06055 GCN5 family acetyltransferase K02348 elaA; ElaA protein D DQ08_03045 competence protein CoiA K06198 coiA; competence protein CoiA D DQ08_00815 tRNA-binding protein K06878 K06878; tRNA-binding protein D DQ08_06275 HAD family hydrolase K07025 K07025; putative hydrolase of the HAD superfamily D DQ08_02060 Fe-S cluster assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB D DQ08_02045 Fe-S cluster assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD D DQ08_03270 ribonuclease BN K07058 K07058; membrane protein D DQ08_03595 sulfurtransferase K07146 K07146; UPF0176 protein D DQ08_07110 bleomycin resistance protein K04750 phnB; PhnB protein D DQ08_07520 membrane protein K03744 lemA; LemA protein D DQ08_06435 sprT-like protein K03095 sprL; SprT-like protein D DQ08_02385 cytochrome O ubiquinol oxidase K03975 dedA; membrane-associated protein D DQ08_01845 membrane protein K01421 yhgE; putative membrane protein D DQ08_10055 membrane protein K08974 K08974; putative membrane protein D DQ08_06500 phosphate ABC transporter substrate-binding protein K08986 ycgQ; putative membrane protein D DQ08_10060 membrane protein K08987 K08987; putative membrane protein D DQ08_04275 protein PhnA K06193 phnA; protein PhnA C 99997 Function unknown D DQ08_06185 phosphohydrolase K06885 K06885; uncharacterized protein D DQ08_01970 alpha/beta hydrolase K06889 K06889; uncharacterized protein D DQ08_07400 membrane protein K06890 K06890; uncharacterized protein D DQ08_09520 CoA-binding protein K06929 K06929; uncharacterized protein D DQ08_06550 Fe-S-oxidoreductase K06940 K06940; uncharacterized protein D DQ08_07405 HAD family hydrolase K06950 K06950; uncharacterized protein D DQ08_03915 phosphohydrolase K06950 K06950; uncharacterized protein D DQ08_05455 RNA-binding protein K06960 K06960; uncharacterized protein D DQ08_01645 DNA-binding protein K06962 K06962; uncharacterized protein D DQ08_05915 nuclease K07004 K07004; uncharacterized protein D DQ08_05975 glyoxalase K07032 K07032; uncharacterized protein D DQ08_04665 membrane protein K07035 K07035; uncharacterized protein D DQ08_05775 YpfJ protein, zinc metalloprotease superfamily K07054 K07054; uncharacterized protein D DQ08_06495 membrane protein K07089 K07089; uncharacterized protein D DQ08_07375 metallophosphoesterase K07095 K07095; uncharacterized protein D DQ08_02890 DNA-binding protein K07105 K07105; uncharacterized protein D DQ08_03635 short-chain dehydrogenase K07124 K07124; uncharacterized protein D DQ08_07325 hypothetical protein K07139 K07139; uncharacterized protein D DQ08_06810 membrane protein K07149 K07149; uncharacterized protein D DQ08_04835 membrane protein K07150 K07150; uncharacterized protein D DQ08_07345 membrane protein K08998 K08998; uncharacterized protein D DQ08_08275 hypothetical protein K09157 K09157; uncharacterized protein D DQ08_04855 hypothetical protein K09384 K09384; uncharacterized protein D DQ08_02435 hypothetical protein K09702 K09702; uncharacterized protein D DQ08_01560 glycosyl hydrolase K09704 K09704; uncharacterized protein D DQ08_04800 DNA-binding protein K09787 K09787; uncharacterized protein D DQ08_09335 membrane protein K09790 K09790; uncharacterized protein D DQ08_06920 S1 RNA-binding protein K00243 K00243; uncharacterized protein D DQ08_09850 hypothetical protein K09861 K09861; uncharacterized protein D DQ08_01460 hypothetical protein K09962 K09962; uncharacterized protein D DQ08_06540 membrane protein K09963 K09963; uncharacterized protein D DQ08_07390 hypothetical protein K09976 K09976; uncharacterized protein D DQ08_05515 hypothetical protein K07584 ysxB; uncharacterized protein D DQ08_02190 hypothetical protein K07586 ygaC; uncharacterized protein D DQ08_08035 hypothetical protein K07742 ylxR; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 30, 2024