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Transcription Machinery - Salinispira pacifica
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AEukaryotic type
B RNA polymerase II system
C RNA polymerase II
D Core subunits
D Pol II specific subunits
D Pol I, II, III common subunits
D Pol IV and V specific subunits
C Basal transcription factors
D TFIIA
D TFIIB
D TFIID
D TFIIE
D TFIIF
D TFIIH
E L21SP2_0281 DNA repair helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
C Mediator complex
D Head
D Middle
D Tail
D CDK-module
D Other mediators
C Coactivators
D SAGA/TFTC/STAGA complex
D BAF/PBAF complex
D SWI/SNF complex
D RSC complex
D Others
C Other transcription-related factors
D Transcription elongation factors
D Transcription termination factor
D PAF1 complex
D NELF complex
D Super elongation complex (SEC)
D Little elongation complex (LEC)
D Brd4/P-TEFb complex
D BUR kinase complex
D CTDK-I complex
D 7SK RNP complex
D DBIRD complex
D Others
B RNA polymerase III system
C RNA polymerase III
D Core subunits
D Pol III specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D TFIIIA
D TFIIIB
D TFIIIC
D TFIIIC, fungi type
C Other transcription-related factors
D snRNA-activating protein complex (SNAPc)
D Octamer transcription factors
D Others
B RNA polymerase I system
C RNA polymerase I
D Core subunits
D Pol I specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D SL1/TIF-1B
C Other transcription-related factors
D UBF
D Transcription initiation factors
D Transcription elongation factors
D NoRC (nucleolar remodeling complex)
D CTDK-I complex
D Transcription termination factors
D Others
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AProkaryotic type
B Bacterial type
C RNA polymerase
D Core subunits
E L21SP2_0899 DNA-directed RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E L21SP2_2704 DNA-directed RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
E L21SP2_2703 DNA-directed RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
E L21SP2_2419 hypothetical protein K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Sigma factors
E L21SP2_1419 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
E L21SP2_0929 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
E L21SP2_1771 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
E L21SP2_2117 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
E L21SP2_0780 RNA polymerase sigma factor RpoE K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E L21SP2_0238 RNA polymerase sigma-54 factor RpoN K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E L21SP2_3297 RNA polymerase sigma-54 factor RpoN K03092 rpoN; RNA polymerase sigma-54 factor
E L21SP2_1204 RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA
C Other transcription-related factors
D RNA polymerase-associated proteins
E L21SP2_1814 Transcription termination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
E L21SP2_1863 Transcription termination protein NusB K03625 nusB; transcription antitermination protein NusB
E L21SP2_1052 Transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
E L21SP2_2709 Transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
E L21SP2_0025 Serine phosphatase RsbU, regulator of sigma subunit K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
E L21SP2_2142 Response regulator K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
E L21SP2_3207 serine phosphatase K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
E L21SP2_3261 Serine phosphatase RsbU, regulator of sigma subunit K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
E L21SP2_3120 Serine phosphatase RsbU, regulator of sigma subunit K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
E L21SP2_3264 Serine phosphatase RsbU, regulator of sigma subunit K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
E L21SP2_3208 anti-sigma F factor antagonist, anti sigma b factor antagonist K04749 rsbV; anti-sigma B factor antagonist
E L21SP2_3262 Anti-sigma F factor antagonist, Anti-sigma B factor antagonist K04749 rsbV; anti-sigma B factor antagonist
D Transcription elongation factors
E L21SP2_3191 C4-type zinc finger protein, DksA/TraR family K06204 dksA; RNA polymerase-binding transcription factor
E L21SP2_2827 C4-type zinc finger protein, DksA/TraR family K06204 dksA; RNA polymerase-binding transcription factor
D Transcription termination factor
E L21SP2_1380 Transcription termination factor Rho K03628 rho; transcription termination factor Rho
B Archaeal type
C RNA polymerase
D Core subunits
C Basal transcription factors
D TFB
D TFE
D TFS
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 9, 2024