+E Transcription factors KO
#
Transcription Factors - Spirosoma aureum
%
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
D G8759_09485 hypothetical protein K04453 MAX; Max protein
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D G8759_09795 AraC family transcriptional regulator K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D G8759_29610 helix-turn-helix domain-containing protein K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D G8759_29800 helix-turn-helix transcriptional regulator K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D G8759_31985 AraC family transcriptional regulator K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D G8759_32590 helix-turn-helix domain-containing protein K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D G8759_32780 helix-turn-helix transcriptional regulator K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D G8759_32815 AraC family transcriptional regulator K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D G8759_32950 helix-turn-helix transcriptional regulator K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D G8759_34280 helix-turn-helix transcriptional regulator K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D G8759_02895 AraC family transcriptional regulator K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D G8759_04225 helix-turn-helix transcriptional regulator K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D G8759_05235 AraC family transcriptional regulator K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D G8759_09180 AraC family transcriptional regulator K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D G8759_12300 AraC family transcriptional regulator K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D G8759_13610 helix-turn-helix transcriptional regulator K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D G8759_15645 helix-turn-helix domain-containing protein K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D G8759_16885 AraC family transcriptional regulator K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D G8759_18125 AraC family transcriptional regulator K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D G8759_18530 helix-turn-helix domain-containing protein K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D G8759_18980 helix-turn-helix transcriptional regulator K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D G8759_19125 AraC family transcriptional regulator K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D G8759_00765 helix-turn-helix transcriptional regulator K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA
D G8759_02635 helix-turn-helix transcriptional regulator K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA
D G8759_05595 helix-turn-helix transcriptional regulator K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA
D G8759_07990 helix-turn-helix transcriptional regulator K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA
D G8759_07995 helix-turn-helix transcriptional regulator K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA
D G8759_10600 helix-turn-helix transcriptional regulator K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA
D G8759_15215 helix-turn-helix transcriptional regulator K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA
D G8759_21590 helix-turn-helix transcriptional regulator K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA
D G8759_22340 helix-turn-helix transcriptional regulator K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA
D G8759_22375 helix-turn-helix transcriptional regulator K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA
D G8759_24815 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D G8759_27225 methylated-DNA--[protein]-cysteine S-methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
C LysR family
D G8759_14830 LysR family transcriptional regulator K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D G8759_17625 LysR family transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D G8759_34535 LysR family transcriptional regulator K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
D G8759_13520 LysR family transcriptional regulator K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
C DeoR family
D G8759_29670 DeoR/GlpR transcriptional regulator K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
D G8759_12780 DeoR/GlpR transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
C LacI family
D G8759_32710 DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D G8759_34310 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D G8759_24360 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D G8759_05665 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D G8759_24180 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D G8759_05780 LacI family transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
C GntR family
D G8759_16570 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D G8759_17980 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D G8759_27245 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
C TetR/AcrR family
D G8759_31990 TetR/AcrR family transcriptional regulator K18136 acrR; TetR/AcrR family transcriptional regulator, multidrug resistance operon repressor
D G8759_17475 TetR/AcrR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator
D G8759_13955 TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
C Lrp/AsnC family
D G8759_29260 winged helix-turn-helix transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D G8759_09145 Lrp/AsnC family transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D G8759_30735 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D G8759_00115 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D G8759_17275 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D G8759_22935 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
C LuxR family
C MarR family
D G8759_32580 winged helix-turn-helix transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D G8759_04705 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D G8759_10850 hypothetical protein K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D G8759_21765 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D G8759_03035 MerR family transcriptional regulator K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
C Fur family
D G8759_01935 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D G8759_09330 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D G8759_18415 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
C IclR family
D G8759_32650 helix-turn-helix domain-containing protein K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D G8759_08790 helix-turn-helix domain-containing protein K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
C CRP/FNR family
D G8759_02780 response regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D G8759_22140 response regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D G8759_15195 Crp/Fnr family transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D G8759_20420 Crp/Fnr family transcriptional regulator K21562 flp; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
C ArsR family
D G8759_11030 winged helix-turn-helix transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D G8759_17130 winged helix-turn-helix transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D G8759_25370 winged helix-turn-helix transcriptional regulator K26993 sdpR; ArsR family transcriptional regulator, repressor of sdpIR and other operons
C XRE family
D G8759_04340 helix-turn-helix domain-containing protein K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator
D G8759_08965 helix-turn-helix domain-containing protein K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator
C PadR family
D G8759_29830 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D G8759_31730 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D G8759_31940 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D G8759_04280 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D G8759_09810 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D G8759_09850 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D G8759_09890 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D G8759_13865 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D G8759_13970 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D G8759_17035 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D G8759_17075 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D G8759_18300 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D G8759_18825 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D G8759_19730 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D G8759_21680 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D G8759_22710 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D G8759_25520 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D G8759_25625 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D G8759_27060 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D G8759_28450 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
C Other families
D G8759_17795 metal-dependent transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D G8759_12280 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D G8759_33625 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D G8759_00900 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D G8759_02980 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D G8759_15995 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D G8759_31055 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D G8759_26995 AAA family ATPase K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D G8759_29495 helix-turn-helix domain-containing protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D G8759_29515 transcriptional regulator K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D G8759_15200 sigma 54-interacting transcriptional regulator K12146 hyfR; hydrogenase-4 transcriptional activator
D G8759_14990 sigma 54-interacting transcriptional regulator K15836 fhlA; formate hydrogenlyase transcriptional activator
D G8759_21520 sigma 54-interacting transcriptional regulator K15836 fhlA; formate hydrogenlyase transcriptional activator
D G8759_21570 sigma 54-interacting transcriptional regulator K15836 fhlA; formate hydrogenlyase transcriptional activator
D G8759_05260 LysR family transcriptional regulator K02019 modE; molybdate transport system regulatory protein
D G8759_14680 helix-turn-helix transcriptional regulator K07727 K07727; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
B Other transcription factors
C BglG family
C Others
D G8759_32085 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D G8759_11830 ROK family protein K02565 nagC; N-acetylglucosamine repressor
D G8759_01360 thiaminase II K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D G8759_23355 PspC domain-containing protein K03973 pspC; phage shock protein C
D G8759_30180 pyrR; bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D G8759_05625 phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D G8759_27260 FMN-binding negative transcriptional regulator K07734 paiB; transcriptional regulator
D G8759_33460 YqgE/AlgH family protein K07735 algH; putative transcriptional regulator
D G8759_02435 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0