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#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Transcription Machinery - Salpingoeca rosetta</h2>
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A<b>Eukaryotic type</b>
B  RNA polymerase II system
C    RNA polymerase II
D      Core subunits
E        PTSG_07432 polymerase II polypeptide A	K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] 
E        PTSG_02289 DNA-directed RNA polymerase II polypeptide	K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] 
E        PTSG_01958 DNA-directed RNA polymerase II subunit RPB3	K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3 
E        PTSG_02173 DNA-directed RNA polymerase II subunit J	K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11 
D      Pol II specific subunits
E        PTSG_10802 uncharacterized protein	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        PTSG_00566 uncharacterized protein	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
E        PTSG_10432 uncharacterized protein	K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 
D      Pol I, II, III common subunits
E        PTSG_01026 uncharacterized protein	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        PTSG_07810 polymerase II polypeptide E	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        PTSG_00413 DNA-directed RNA polymerase I	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        PTSG_01222 RNA polymerase subunit	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        PTSG_06010 uncharacterized protein	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        PTSG_11312 DNA-directed RNA polymerase I	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
D      Pol IV and V specific subunits
C    Basal transcription factors
D      TFIIA
E        PTSG_02335 uncharacterized protein	K03123 TFIIA2; transcription initiation factor TFIIA small subunit 
D      TFIIB
E        PTSG_05216 uncharacterized protein	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFIID
E        PTSG_08007 TATA box binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        PTSG_08683 uncharacterized protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        PTSG_12771 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        PTSG_00702 uncharacterized protein	K03125 TAF1; transcription initiation factor TFIID subunit 1 [EC:2.3.1.48 2.7.11.1] 
E        PTSG_03502 uncharacterized protein	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        PTSG_07055 uncharacterized protein	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        PTSG_00325 uncharacterized protein	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        PTSG_00096 uncharacterized protein	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        PTSG_03320 uncharacterized protein	K14535 TAF9; transcription initiation factor TFIID subunit 9 
E        PTSG_03455 uncharacterized protein	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        PTSG_03418 uncharacterized protein	K03127 TAF13; transcription initiation factor TFIID subunit 13 
D      TFIIE
E        PTSG_12497 uncharacterized protein	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        PTSG_05258 uncharacterized protein	K03137 TFIIE2; transcription initiation factor TFIIE subunit beta 
D      TFIIF
E        PTSG_06879 uncharacterized protein	K03138 TFIIF1; transcription initiation factor TFIIF subunit alpha 
E        PTSG_06576 uncharacterized protein	K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] 
D      TFIIH
E        PTSG_06395 uncharacterized protein	K03141 TFIIH1; transcription initiation factor TFIIH subunit 1 
E        PTSG_01653 uncharacterized protein	K03142 TFIIH2; transcription initiation factor TFIIH subunit 2 
E        PTSG_03422 uncharacterized protein	K03143 TFIIH3; transcription initiation factor TFIIH subunit 3 
E        PTSG_11329 uncharacterized protein	K03144 TFIIH4; transcription initiation factor TFIIH subunit 4 
E        PTSG_03178 uncharacterized protein	K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] 
E        PTSG_12522 TFIIH basal transcription factor complex helicase XPD subunit	K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] 
E        PTSG_01625 uncharacterized protein	K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit 
E        PTSG_10371 CMGC/CDK/CDK7 protein kinase	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        PTSG_02149 uncharacterized protein	K10842 MNAT1; CDK-activating kinase assembly factor MAT1 
C    Mediator complex
D      Head
E        PTSG_00859 uncharacterized protein	K15128 MED6; mediator of RNA polymerase II transcription subunit 6 
E        PTSG_00616 uncharacterized protein	K15129 MED8; mediator of RNA polymerase II transcription subunit 8 
D      Middle
E        PTSG_04714 uncharacterized protein	K15146 MED4; mediator of RNA polymerase II transcription subunit 4 
E        PTSG_02428 uncharacterized protein	K15148 MED7; mediator of RNA polymerase II transcription subunit 7 
E        PTSG_09510 mediator complex subunit 31	K15153 MED31; mediator of RNA polymerase II transcription subunit 31 
D      Tail
E        PTSG_12212 uncharacterized protein	K15156 MED14; mediator of RNA polymerase II transcription subunit 14 
D      CDK-module
E        PTSG_00138 CMGC/CDK/CDK8 protein kinase	K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23] 
D      Other mediators
C    Coactivators
D      SAGA/TFTC/STAGA complex
E        PTSG_07669 uncharacterized protein	K08874 TRRAP; transformation/transcription domain-associated protein 
E        PTSG_11425 uncharacterized protein	K11314 TADA2A; transcriptional adapter 2-alpha 
E        PTSG_00471 uncharacterized protein	K11317 TADA1; transcriptional adapter 1 
E        PTSG_03502 uncharacterized protein	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        PTSG_07055 uncharacterized protein	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        PTSG_00325 uncharacterized protein	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        PTSG_00096 uncharacterized protein	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        PTSG_03320 uncharacterized protein	K14535 TAF9; transcription initiation factor TFIID subunit 9 
E        PTSG_03455 uncharacterized protein	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        PTSG_00561 uncharacterized protein	K11363 SGF11; SAGA-associated factor 11 
E        PTSG_06410 uncharacterized protein	K11364 SGF29; SAGA-associated factor 29 
E        PTSG_05236 uncharacterized protein	K11368 ENY2; enhancer of yellow 2 transcription factor 
E        PTSG_03464 uncharacterized protein	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        PTSG_09575 splicing factor 3b subunit 3	K12830 SF3B3; splicing factor 3B subunit 3 
D      BAF/PBAF complex
E        PTSG_08079 SNF2 family DNA-dependent ATPase	K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-] 
E        PTSG_08750 uncharacterized protein	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
E        PTSG_06050 uncharacterized protein	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        PTSG_01126 uncharacterized protein	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        PTSG_01553 non-muscle actin	K05692 ACTB_G1; actin beta/gamma 1 
E        PTSG_02201 non-muscle actin	K05692 ACTB_G1; actin beta/gamma 1 
E        PTSG_05705 non-muscle actin	K05692 ACTB_G1; actin beta/gamma 1 
E        PTSG_12481 uncharacterized protein	K11652 ACTL6B; actin-like protein 6B 
E        PTSG_04375 uncharacterized protein	K11757 PBRM1; protein polybromo-1 
D      SWI/SNF complex
E        PTSG_08750 uncharacterized protein	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
D      RSC complex
D      Others
C    Other transcription-related factors
D      Transcription elongation factors
E        PTSG_03204 uncharacterized protein	K03145 TFIIS; transcription elongation factor S-II 
E        PTSG_04238 transcription elongation factor SPT4	K15171 SUPT4H1; transcription elongation factor SPT4 
E        PTSG_12984 uncharacterized protein	K15172 SUPT5H; transcription elongation factor SPT5 
E        PTSG_04225 uncharacterized protein	K11292 SUPT6H; transcription elongation factor SPT6 
D      Transcription termination factor
E        PTSG_03416 uncharacterized protein	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        PTSG_08901 uncharacterized protein	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        PTSG_00171 cleavage and polyadenylation specificity factor subunit 3	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        PTSG_11997 mRNA 3'-end-processing protein yth1	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        PTSG_06508 phosphatase 1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        PTSG_11302 phosphatase 1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        PTSG_04836 serine/threonine protein phosphatase 1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        PTSG_01531 uncharacterized protein	K06100 SYMPK; symplekin 
E        PTSG_00231 RNA polymerase II subunit A domain phosphatase SSU72	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
E        PTSG_01923 uncharacterized protein	K14845 RAI1; RAT1-interacting protein 
E        PTSG_01159 uncharacterized protein	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        PTSG_01206 uncharacterized protein	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        PTSG_06696 uncharacterized protein	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        PTSG_01411 peptidyl-prolyl cis-trans isomerase pin1	K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8] 
E        PTSG_02690 peptidylprolyl cis/trans isomerase	K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8] 
D      PAF1 complex
E        PTSG_00101 uncharacterized protein	K15174 PAF1; RNA polymerase II-associated factor 1 
E        PTSG_06563 uncharacterized protein	K15175 CDC73; parafibromin 
E        PTSG_07709 uncharacterized protein	K15176 CTR9; RNA polymerase-associated protein CTR9 
E        PTSG_02277 uncharacterized protein	K15177 LEO1; RNA polymerase-associated protein LEO1 
E        PTSG_02413 uncharacterized protein	K15178 RTF1; RNA polymerase-associated protein RTF1 
D      NELF complex
E        PTSG_06463 uncharacterized protein	K15181 TH1L; negative elongation factor C/D 
D      Super elongation complex (SEC)
E        PTSG_10173 CMGC/CDK protein kinase	K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23] 
D      Little elongation complex (LEC)
D      Brd4/P-TEFb complex
E        PTSG_10173 CMGC/CDK protein kinase	K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23] 
D      BUR kinase complex
D      CTDK-I complex
D      7SK RNP complex
E        PTSG_05650 uncharacterized protein	K15190 MEPCE; 7SK snRNA methylphosphate capping enzyme [EC:2.1.1.-] 
E        PTSG_10173 CMGC/CDK protein kinase	K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23] 
D      DBIRD complex
D      Others
E        PTSG_08218 BTAF1 protein	K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-] 
E        PTSG_06453 uncharacterized protein	K21751 DR1; down-regulator of transcription 1 
E        PTSG_02327 uncharacterized protein	K21752 DRAP1; Dr1-associated corepressor 
E        PTSG_03974 uncharacterized protein	K15732 CTDP1; RNA polymerase II subunit A C-terminal domain phosphatase [EC:3.1.3.16] 
E        PTSG_02943 small CTD phosphatase 1	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        PTSG_11763 uncharacterized protein	K17498 SPN1; transcription factor SPN1 
E        PTSG_13130 uncharacterized protein	K20826 RPAP1; RNA polymerase II-associated protein 1 
E        PTSG_03732 uncharacterized protein	K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16] 
E        PTSG_09406 uncharacterized protein	K23002 RPAP3; RNA polymerase II-associated protein 3 
E        PTSG_07096 uncharacterized protein	K23326 CCNK; cyclin K 
E        PTSG_02209 XPA binding protein 1	K24104 GPN; GPN-loop GTPase 
E        PTSG_04337 MinD type ATPase	K24104 GPN; GPN-loop GTPase 
E        PTSG_12237 GPN-loop GTPase 2	K24104 GPN; GPN-loop GTPase 
B  RNA polymerase III system
C    RNA polymerase III
D      Core subunits
E        PTSG_11023 RNA polymerase III large subunit	K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6] 
E        PTSG_12033 uncharacterized protein	K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6] 
E        PTSG_06134 RNA polymerase subunit I	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        PTSG_09519 uncharacterized protein	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol III specific subunits
E        PTSG_03049 uncharacterized protein	K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3 
E        PTSG_07660 uncharacterized protein	K14721 RPC5; DNA-directed RNA polymerase III subunit RPC5 
E        PTSG_11665 uncharacterized protein	K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6 
E        PTSG_03718 uncharacterized protein	K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7 
E        PTSG_05411 uncharacterized protein	K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8 
E        PTSG_02879 RNA polymerase III subunit C11	K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11 
D      Pol I, II, III common subunits
E        PTSG_01026 uncharacterized protein	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        PTSG_07810 polymerase II polypeptide E	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        PTSG_00413 DNA-directed RNA polymerase I	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        PTSG_01222 RNA polymerase subunit	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        PTSG_06010 uncharacterized protein	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        PTSG_11312 DNA-directed RNA polymerase I	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      TFIIIA
D      TFIIIB
E        PTSG_08007 TATA box binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        PTSG_08683 uncharacterized protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        PTSG_12771 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        PTSG_07961 uncharacterized protein	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
D      TFIIIC
E        PTSG_03440 uncharacterized protein	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
E        PTSG_01267 uncharacterized protein	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
D      TFIIIC, fungi type
E        PTSG_01267 uncharacterized protein	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        PTSG_03440 uncharacterized protein	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
C    Other transcription-related factors
D      snRNA-activating protein complex (SNAPc)
E        PTSG_00167 uncharacterized protein	K15210 SNAPC3; snRNA-activating protein complex subunit 3 
D      Octamer transcription factors
D      Others
B  RNA polymerase I system
C    RNA polymerase I
D      Core subunits
E        PTSG_06134 RNA polymerase subunit I	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        PTSG_09519 uncharacterized protein	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol I specific subunits
E        PTSG_03877 uncharacterized protein	K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49 
E        PTSG_08844 uncharacterized protein	K03000 RPA12; DNA-directed RNA polymerase I subunit RPA12 
D      Pol I, II, III common subunits
E        PTSG_01026 uncharacterized protein	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        PTSG_07810 polymerase II polypeptide E	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        PTSG_00413 DNA-directed RNA polymerase I	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        PTSG_01222 RNA polymerase subunit	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        PTSG_06010 uncharacterized protein	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        PTSG_11312 DNA-directed RNA polymerase I	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      SL1/TIF-1B
E        PTSG_08007 TATA box binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        PTSG_08683 uncharacterized protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        PTSG_12771 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
C    Other transcription-related factors
D      UBF
D      Transcription initiation factors
E        PTSG_00924 uncharacterized protein	K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3 
D      Transcription elongation factors
E        PTSG_04238 transcription elongation factor SPT4	K15171 SUPT4H1; transcription elongation factor SPT4 
E        PTSG_12984 uncharacterized protein	K15172 SUPT5H; transcription elongation factor SPT5 
D      NoRC (nucleolar remodeling complex)
E        PTSG_00442 transcription activator	K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] 
E        PTSG_05311 SNF2 family DNA-dependent ATPase	K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] 
D      CTDK-I complex
D      Transcription termination factors
D      Others
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A<b>Prokaryotic type</b>
B  Bacterial type
C    RNA polymerase
D      Core subunits
D      Sigma factors
C    Other transcription-related factors
D      RNA polymerase-associated proteins
D      Transcription elongation factors
D      Transcription termination factor
B  Archaeal type
C    RNA polymerase
D      Core subunits
C    Basal transcription factors
D      TFB
E        PTSG_05216 uncharacterized protein	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFE
E        PTSG_12497 uncharacterized protein	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
D      TFS
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#Last updated: April 9, 2024