+D GENES KO #

  KEGG Orthology (KO) - Formicincola oecophyllae

% ! A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:swf00010] D E3E12_08050 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D E3E12_05860 hypothetical protein K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D E3E12_07135 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D E3E12_05330 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D E3E12_05335 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D E3E12_01675 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D E3E12_07115 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D E3E12_06890 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D E3E12_07165 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D E3E12_07170 pyruvate dehydrogenase complex E1 component subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D E3E12_07175 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D E3E12_07180 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D E3E12_04385 alpha-keto acid decarboxylase family protein K01568 PDC; pyruvate decarboxylase [EC:4.1.1.1] D E3E12_02495 alcohol dehydrogenase catalytic domain-containing protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D E3E12_04380 adhP; alcohol dehydrogenase AdhP K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D E3E12_07410 NAD(P)-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D E3E12_03580 cytochrome c K22474 adhB; alcohol dehydrogenase (quinone), cytochrome c subunit [EC:1.1.5.5] D E3E12_07375 galactose mutarotase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] C 00020 Citrate cycle (TCA cycle) [PATH:swf00020] D E3E12_03330 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D E3E12_03335 acnA; aconitate hydratase AcnA K01681 ACO; aconitate hydratase [EC:4.2.1.3] D E3E12_03325 NAD-dependent isocitrate dehydrogenase K00030 IDH3; isocitrate dehydrogenase (NAD+) [EC:1.1.1.41] D E3E12_02885 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D E3E12_03995 odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D E3E12_07180 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D E3E12_05605 class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D E3E12_07165 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D E3E12_07170 pyruvate dehydrogenase complex E1 component subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D E3E12_07175 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] C 00030 Pentose phosphate pathway [PATH:swf00030] D E3E12_05860 hypothetical protein K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D E3E12_00960 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D E3E12_05875 pgl; 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31] D E3E12_00595 lactonase family protein K07404 pgl; 6-phosphogluconolactonase [EC:3.1.1.31] D E3E12_05865 gnd; decarboxylating 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D E3E12_03735 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D E3E12_05855 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D E3E12_05880 rpiA; ribose-5-phosphate isomerase RpiA K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D E3E12_04300 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D E3E12_07485 phosphogluconate dehydratase K01690 edd; phosphogluconate dehydratase [EC:4.2.1.12] D E3E12_07490 eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D E3E12_00260 SDR family oxidoreductase K00034 gdh; glucose 1-dehydrogenase [EC:1.1.1.47] D E3E12_00265 SDR family oxidoreductase K00034 gdh; glucose 1-dehydrogenase [EC:1.1.1.47] D E3E12_03575 GMC family oxidoreductase K06151 E1.1.99.3A; gluconate 2-dehydrogenase alpha chain [EC:1.1.99.3] D E3E12_03570 gluconate 2-dehydrogenase subunit 3 family protein K06152 E1.1.99.3G; gluconate 2-dehydrogenase gamma chain [EC:1.1.99.3] D E3E12_05885 gluconokinase K00851 idnK; gluconokinase [EC:2.7.1.12] C 00040 Pentose and glucuronate interconversions [PATH:swf00040] D E3E12_04525 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D E3E12_00620 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D E3E12_03735 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D E3E12_06380 SMP-30/gluconolactonase/LRE family protein K14274 xylC; xylono-1,5-lactonase [EC:3.1.1.110] C 00051 Fructose and mannose metabolism [PATH:swf00051] D E3E12_03450 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D E3E12_00615 phosphomannomutase/phosphoglucomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D E3E12_03455 phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D E3E12_07135 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D E3E12_04250 glycoside hydrolase family 32 protein K03332 fruA; fructan beta-fructosidase [EC:3.2.1.80] C 00052 Galactose metabolism [PATH:swf00052] D E3E12_07375 galactose mutarotase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D E3E12_04625 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D E3E12_00620 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D E3E12_08050 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] C 00053 Ascorbate and aldarate metabolism D E3E12_04525 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] C 00500 Starch and sucrose metabolism [PATH:swf00500] D E3E12_08145 glycoside hydrolase family 32 protein K01212 sacC; levanase [EC:3.2.1.65] D E3E12_08160 glycoside hydrolase family 32 protein K01212 sacC; levanase [EC:3.2.1.65] D E3E12_00620 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D E3E12_08050 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D E3E12_05860 hypothetical protein K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:swf00520] D E3E12_08445 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D E3E12_05825 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D E3E12_08450 glmU; bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D E3E12_02785 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D E3E12_01025 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D E3E12_06805 DegT/DnrJ/EryC1/StrS family aminotransferase K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98] D E3E12_08050 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D E3E12_00620 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D E3E12_04525 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D E3E12_04625 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D E3E12_05860 hypothetical protein K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D E3E12_00615 phosphomannomutase/phosphoglucomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D E3E12_03455 phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D E3E12_03450 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] C 00620 Pyruvate metabolism [PATH:swf00620] D E3E12_07165 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D E3E12_07170 pyruvate dehydrogenase complex E1 component subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D E3E12_07175 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D E3E12_07180 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D E3E12_04380 adhP; alcohol dehydrogenase AdhP K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D E3E12_02495 alcohol dehydrogenase catalytic domain-containing protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D E3E12_07410 NAD(P)-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D E3E12_03580 cytochrome c K22474 adhB; alcohol dehydrogenase (quinone), cytochrome c subunit [EC:1.1.5.5] D E3E12_06890 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D E3E12_06370 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D E3E12_05455 acetyl-CoA carboxylase biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D E3E12_05460 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D E3E12_02905 acetyl-CoA carboxylase carboxyltransferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D E3E12_05190 alpha-hydroxy-acid oxidizing protein K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3] D E3E12_03510 D-lactate dehydrogenase K03777 dld; D-lactate dehydrogenase (quinone) [EC:1.1.5.12] D E3E12_06490 gloA; lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D E3E12_01505 MBL fold metallo-hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D E3E12_03830 MBL fold metallo-hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D E3E12_02545 protein deglycase HchA K05523 hchA; D-lactate dehydratase / protein deglycase [EC:4.2.1.130 3.5.1.124] D E3E12_05610 NAD-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D E3E12_05605 class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D E3E12_00790 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:swf00630] D E3E12_03330 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D E3E12_03335 acnA; aconitate hydratase AcnA K01681 ACO; aconitate hydratase [EC:4.2.1.3] D E3E12_03230 catalase K03781 katE; catalase [EC:1.11.1.6] D E3E12_05935 HAD family hydrolase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D E3E12_07370 HAD family hydrolase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D E3E12_04435 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D E3E12_07260 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D E3E12_07180 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D E3E12_07490 eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D E3E12_04750 NAD-dependent formate dehydrogenase K00122 FDH; formate dehydrogenase [EC:1.17.1.9] D E3E12_02665 fdxH; formate dehydrogenase subunit beta K00124 fdoH; formate dehydrogenase iron-sulfur subunit D E3E12_02670 formate dehydrogenase subunit gamma K00127 fdoI; formate dehydrogenase subunit gamma C 00640 Propanoate metabolism [PATH:swf00640] D E3E12_07180 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D E3E12_06370 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D E3E12_05455 acetyl-CoA carboxylase biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D E3E12_05460 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D E3E12_02905 acetyl-CoA carboxylase carboxyltransferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D E3E12_05910 glycerol dehydrogenase K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6] C 00650 Butanoate metabolism [PATH:swf00650] D E3E12_02770 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00660 C5-Branched dibasic acid metabolism C 00562 Inositol phosphate metabolism [PATH:swf00562] D E3E12_00170 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D E3E12_01360 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D E3E12_07135 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:swf00190] D E3E12_05740 NAD(P)/FAD-dependent oxidoreductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D E3E12_02695 petA; ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D E3E12_02705 hypothetical protein K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit D E3E12_02700 cytochrome b K00410 fbcH; ubiquinol-cytochrome c reductase cytochrome b/c1 subunit D E3E12_03045 cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D E3E12_03050 cydB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D E3E12_03610 atpA; F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D E3E12_03600 atpD; F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D E3E12_03605 F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D E3E12_03615 atpH; ATP synthase F1 subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D E3E12_03595 atpC; ATP synthase F1 subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D E3E12_03945 F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a D E3E12_03955 hypothetical protein K02109 ATPF0B; F-type H+-transporting ATPase subunit b D E3E12_03960 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b D E3E12_03950 F0F1 ATP synthase subunit C K02128 ATPeF0C; F-type H+-transporting ATPase subunit c D E3E12_04765 inorganic diphosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1] D E3E12_06840 RNA degradosome polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation by Calvin cycle [PATH:swf00710] D E3E12_05335 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D E3E12_05330 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D E3E12_05855 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D E3E12_05880 rpiA; ribose-5-phosphate isomerase RpiA K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D E3E12_07135 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D E3E12_03735 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D E3E12_00790 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] C 00720 Other carbon fixation pathways [PATH:swf00720] D E3E12_00790 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D E3E12_05605 class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D E3E12_03335 acnA; aconitate hydratase AcnA K01681 ACO; aconitate hydratase [EC:4.2.1.3] D E3E12_06370 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D E3E12_05455 acetyl-CoA carboxylase biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D E3E12_05460 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D E3E12_02905 acetyl-CoA carboxylase carboxyltransferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D E3E12_02040 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] C 00680 Methane metabolism [PATH:swf00680] D E3E12_02505 gfa; S-(hydroxymethyl)glutathione synthase K03396 gfa; S-(hydroxymethyl)glutathione synthase [EC:4.4.1.22] D E3E12_02495 alcohol dehydrogenase catalytic domain-containing protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D E3E12_02500 fghA; S-formylglutathione hydrolase K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12] D E3E12_04750 NAD-dependent formate dehydrogenase K00122 FDH; formate dehydrogenase [EC:1.17.1.9] D E3E12_02665 fdxH; formate dehydrogenase subunit beta K00124 fdoH; formate dehydrogenase iron-sulfur subunit D E3E12_02670 formate dehydrogenase subunit gamma K00127 fdoI; formate dehydrogenase subunit gamma D E3E12_07260 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D E3E12_07115 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D E3E12_00790 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D E3E12_01675 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D E3E12_06975 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D E3E12_04800 phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D E3E12_04405 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 00910 Nitrogen metabolism [PATH:swf00910] D E3E12_01235 MFS transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D E3E12_01240 nitrate reductase subunit alpha K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-] D E3E12_01245 narH; nitrate reductase subunit beta K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-] D E3E12_01255 narI; respiratory nitrate reductase subunit gamma K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-] D E3E12_05920 nitric-oxide reductase large subunit K04561 norB; nitric oxide reductase subunit B [EC:1.7.2.5] D E3E12_04435 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D E3E12_06340 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] C 00920 Sulfur metabolism [PATH:swf00920] D E3E12_01530 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D E3E12_07380 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D E3E12_03590 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:swf00061] D E3E12_06370 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D E3E12_05455 acetyl-CoA carboxylase biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D E3E12_05460 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D E3E12_02905 acetyl-CoA carboxylase carboxyltransferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D E3E12_00190 acyl carrier protein K02078 acpP; acyl carrier protein D E3E12_00040 acyl carrier protein K02078 acpP; acyl carrier protein D E3E12_00200 fabD; ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D E3E12_00840 ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D E3E12_00185 fabF; beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D E3E12_00195 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D E3E12_06475 fabZ; 3-hydroxyacyl-ACP dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D E3E12_00350 fabI; enoyl-ACP reductase FabI K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D E3E12_00580 2-nitropropane dioxygenase K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9] C 00062 Fatty acid elongation C 00071 Fatty acid degradation D E3E12_02495 alcohol dehydrogenase catalytic domain-containing protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D E3E12_04380 adhP; alcohol dehydrogenase AdhP K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:swf00561] D E3E12_07410 NAD(P)-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D E3E12_05910 glycerol dehydrogenase K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6] D E3E12_00845 plsX; phosphate acyltransferase PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D E3E12_05400 plsY; glycerol-3-phosphate 1-O-acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D E3E12_01490 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D E3E12_04145 hypothetical protein K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107] C 00564 Glycerophospholipid metabolism [PATH:swf00564] D E3E12_06685 NAD(P)-dependent glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D E3E12_05400 plsY; glycerol-3-phosphate 1-O-acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D E3E12_01490 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D E3E12_04145 hypothetical protein K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107] D E3E12_06645 methyltransferase domain-containing protein K00570 pmtA; phosphatidylethanolamine/phosphatidyl-N-methylethanolamine N-methyltransferase [EC:2.1.1.17 2.1.1.71] D E3E12_06445 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D E3E12_01515 phosphatidylcholine/phosphatidylserine synthase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D E3E12_01510 phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65] D E3E12_06960 cls; cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] D E3E12_07100 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K08744 CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41] C 00565 Ether lipid metabolism C 00600 Sphingolipid metabolism D E3E12_05295 glycosyltransferase K00720 UGCG; ceramide glucosyltransferase [EC:2.4.1.80] C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism C 01040 Biosynthesis of unsaturated fatty acids B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:swf00230] D E3E12_04300 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D E3E12_05600 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D E3E12_05940 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D E3E12_06825 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D E3E12_07225 purL; phosphoribosylformylglycinamidine synthase subunit PurL K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3] D E3E12_07210 purS; phosphoribosylformylglycinamidine synthase subunit PurS K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3] D E3E12_07220 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D E3E12_06830 phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D E3E12_08360 5-(carboxyamino)imidazole ribonucleotide synthase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] D E3E12_08355 purE; 5-(carboxyamino)imidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D E3E12_07205 phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D E3E12_07200 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D E3E12_07500 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D E3E12_02750 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D E3E12_03875 pgeF; peptidoglycan editing factor PgeF K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D E3E12_07070 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D E3E12_06820 nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D E3E12_02955 non-canonical purine NTP pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D E3E12_01090 xanthine phosphoribosyltransferase K00769 gpt; xanthine phosphoribosyltransferase [EC:2.4.2.22] D E3E12_06875 guaA; glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D E3E12_04360 guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D E3E12_00340 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D E3E12_00335 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D E3E12_06220 deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1] D E3E12_06405 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D E3E12_06845 Ppx/GppA family phosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D E3E12_00240 GAF domain-containing protein K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D E3E12_04810 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D E3E12_01300 TIGR00282 family metallophosphoesterase K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16] D E3E12_01810 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00240 Pyrimidine metabolism [PATH:swf00240] D E3E12_01645 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D E3E12_01640 carA; glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D E3E12_05410 aspartate carbamoyltransferase catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D E3E12_00420 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3] D E3E12_05405 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3] D E3E12_02125 dihydroorotate oxidase K00226 pyrD; dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1] D E3E12_05010 quinone-dependent dihydroorotate dehydrogenase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2] D E3E12_00320 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D E3E12_08320 pyrF; orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D E3E12_06430 UMP kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D E3E12_06820 nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D E3E12_04155 septum formation protein Maf K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D E3E12_04280 maf; septum formation protein Maf K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D E3E12_07125 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D E3E12_04930 (d)CMP kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D E3E12_01300 TIGR00282 family metallophosphoesterase K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16] D E3E12_02790 dCTP deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13] D E3E12_00340 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D E3E12_00335 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D E3E12_00495 tmk; dTMP kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D E3E12_08560 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D E3E12_04675 FAD-dependent thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] D E3E12_04685 malonic semialdehyde reductase K09019 rutE; 3-hydroxypropanoate dehydrogenase [EC:1.1.1.-] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:swf00250] D E3E12_01140 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D E3E12_01145 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D E3E12_01610 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D E3E12_06620 asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D E3E12_01410 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D E3E12_00455 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D E3E12_04810 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D E3E12_07200 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D E3E12_05410 aspartate carbamoyltransferase catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D E3E12_02770 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D E3E12_04435 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D E3E12_01645 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D E3E12_01640 carA; glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D E3E12_07220 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D E3E12_08445 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D E3E12_05600 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:swf00260] D E3E12_00585 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D E3E12_02875 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D E3E12_03410 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D E3E12_01105 homoserine kinase K02204 thrB2; homoserine kinase type II [EC:2.7.1.39] D E3E12_06665 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D E3E12_02045 low specificity L-threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48] D E3E12_07260 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D E3E12_01675 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D E3E12_06975 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D E3E12_04800 phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D E3E12_04405 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D E3E12_05585 hemA; 5-aminolevulinate synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37] D E3E12_07180 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D E3E12_01515 phosphatidylcholine/phosphatidylserine synthase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D E3E12_03270 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D E3E12_02895 tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D E3E12_02890 trpB; tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] C 00270 Cysteine and methionine metabolism [PATH:swf00270] D E3E12_07380 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D E3E12_03590 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D E3E12_02840 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D E3E12_06735 S-methyl-5'-thioadenosine phosphorylase K00772 mtaP; 5'-methylthioadenosine phosphorylase [EC:2.4.2.28] D E3E12_03875 pgeF; peptidoglycan editing factor PgeF K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D E3E12_05915 cystathionine gamma-synthase family protein K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11] D E3E12_05105 GAF domain-containing protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14] D E3E12_03985 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D E3E12_00585 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D E3E12_02875 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D E3E12_03410 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D E3E12_05070 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D E3E12_00390 glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D E3E12_06640 gshB; glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3] D E3E12_01140 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D E3E12_01145 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D E3E12_03270 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D E3E12_06975 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D E3E12_04800 phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00280 Valine, leucine and isoleucine degradation [PATH:swf00280] D E3E12_05070 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D E3E12_07180 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:swf00290] D E3E12_04420 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D E3E12_05070 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] C 00300 Lysine biosynthesis [PATH:swf00300] D E3E12_03410 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D E3E12_00585 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D E3E12_02875 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D E3E12_06995 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D E3E12_05720 dihydrodipicolinate synthase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D E3E12_02830 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D E3E12_06530 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117] D E3E12_03555 aspartate aminotransferase family protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D E3E12_06535 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D E3E12_04825 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D E3E12_06855 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D E3E12_00990 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D E3E12_00995 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation [PATH:swf00310] D E3E12_03995 odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D E3E12_07180 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D E3E12_02770 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D E3E12_01345 lysine-2,3-aminomutase-like protein K01843 kamA; lysine 2,3-aminomutase [EC:5.4.3.2] C 00220 Arginine biosynthesis [PATH:swf00220] D E3E12_03560 argF; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D E3E12_01410 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D E3E12_00455 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D E3E12_07220 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D E3E12_04435 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D E3E12_01645 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D E3E12_01640 carA; glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D E3E12_01140 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D E3E12_01145 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D E3E12_05745 argJ; bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] D E3E12_06520 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8] D E3E12_04785 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] D E3E12_03555 aspartate aminotransferase family protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] C 00330 Arginine and proline metabolism [PATH:swf00330] D E3E12_08525 agmatine deiminase family protein K10536 aguA; agmatine deiminase [EC:3.5.3.12] D E3E12_03895 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D E3E12_00950 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D E3E12_03855 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D E3E12_01140 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D E3E12_01145 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] C 00340 Histidine metabolism [PATH:swf00340] D E3E12_04365 ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17] D E3E12_04805 ATP phosphoribosyltransferase regulatory subunit K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit D E3E12_02610 phosphoribosyl-ATP diphosphatase K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31] D E3E12_02600 hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] D E3E12_02380 hisH; imidazole glycerol phosphate synthase subunit HisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D E3E12_02605 hisF; imidazole glycerol phosphate synthase subunit HisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D E3E12_02375 hisB; imidazoleglycerol-phosphate dehydratase HisB K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] D E3E12_05850 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D E3E12_06980 histidinol phosphate phosphatase K05602 hisN; histidinol-phosphatase [EC:3.1.3.15] D E3E12_04370 hisD; histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] C 00350 Tyrosine metabolism [PATH:swf00350] D E3E12_01140 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D E3E12_01145 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D E3E12_05850 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D E3E12_02495 alcohol dehydrogenase catalytic domain-containing protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D E3E12_04380 adhP; alcohol dehydrogenase AdhP K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D E3E12_02770 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00360 Phenylalanine metabolism [PATH:swf00360] D E3E12_01140 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D E3E12_01145 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D E3E12_05850 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] C 00380 Tryptophan metabolism [PATH:swf00380] D E3E12_03995 odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D E3E12_07180 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D E3E12_03230 catalase K03781 katE; catalase [EC:1.11.1.6] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:swf00400] D E3E12_06280 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D E3E12_06355 aroB; 3-dehydroquinate synthase K13829 aroKB; shikimate kinase / 3-dehydroquinate synthase [EC:2.7.1.71 4.2.3.4] D E3E12_05450 aroQ; type II 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10] D E3E12_00440 aroE; shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D E3E12_06360 shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71] D E3E12_04925 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D E3E12_00345 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D E3E12_07145 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D E3E12_07150 aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D E3E12_07155 trpD; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] D E3E12_08325 phosphoribosylanthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24] D E3E12_07160 trpC; indole-3-glycerol phosphate synthase TrpC K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48] D E3E12_02895 tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D E3E12_02890 trpB; tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D E3E12_00315 chorismate mutase K04092 tyrA1; chorismate mutase [EC:5.4.99.5] D E3E12_06895 prephenate dehydrogenase/arogenate dehydrogenase family protein K00220 tyrC; cyclohexadieny/prephenate dehydrogenase [EC:1.3.1.43 1.3.1.12] D E3E12_06990 prephenate dehydratase K04518 pheA2; prephenate dehydratase [EC:4.2.1.51] D E3E12_01140 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D E3E12_01145 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D E3E12_05850 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism D E3E12_05905 pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] C 00430 Taurine and hypotaurine metabolism D E3E12_03380 gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D E3E12_04885 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] C 00440 Phosphonate and phosphinate metabolism D E3E12_00475 MBL fold metallo-hydrolase K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55] C 00450 Selenocompound metabolism [PATH:swf00450] D E3E12_05915 cystathionine gamma-synthase family protein K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11] D E3E12_00760 cysteine desulfurase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D E3E12_00875 trxB; thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D E3E12_05240 NAD(P)/FAD-dependent oxidoreductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D E3E12_00485 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:swf00460] D E3E12_03380 gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D E3E12_04885 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D E3E12_06620 asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D E3E12_07260 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:swf00470] D E3E12_00050 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D E3E12_01030 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D E3E12_07220 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D E3E12_00325 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D E3E12_01005 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D E3E12_04825 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D E3E12_06855 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] C 00480 Glutathione metabolism [PATH:swf00480] D E3E12_03380 gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D E3E12_04885 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D E3E12_00390 glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D E3E12_06640 gshB; glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3] D E3E12_06795 leucyl aminopeptidase family protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D E3E12_01525 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D E3E12_00075 glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D E3E12_02245 glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D E3E12_06270 glutathione-disulfide reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7] D E3E12_05865 gnd; decarboxylating 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D E3E12_00960 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation C 00540 Lipopolysaccharide biosynthesis [PATH:swf00540] D E3E12_06480 lpxA; acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D E3E12_01050 hypothetical protein K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D E3E12_06470 lpxD; UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D E3E12_06485 DUF1009 domain-containing protein K09949 lpxI; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D E3E12_01435 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D E3E12_00365 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D E3E12_06570 KpsF/GutQ family sugar-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D E3E12_07120 kdsA; 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D E3E12_06985 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D E3E12_00360 hypothetical protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D E3E12_00370 lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D E3E12_04655 rfaE2; D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70] D E3E12_03885 rfaD; ADP-glyceromanno-heptose 6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20] D E3E12_00425 glycosyltransferase family 9 protein K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25] C 00542 O-Antigen repeat unit biosynthesis C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:swf00541] D E3E12_00620 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D E3E12_04625 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D E3E12_04525 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D E3E12_03450 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D E3E12_00615 phosphomannomutase/phosphoglucomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D E3E12_03455 phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D E3E12_08450 glmU; bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D E3E12_06805 DegT/DnrJ/EryC1/StrS family aminotransferase K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98] C 00550 Peptidoglycan biosynthesis [PATH:swf00550] D E3E12_02785 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D E3E12_01025 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D E3E12_01020 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D E3E12_01005 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D E3E12_00990 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D E3E12_01030 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D E3E12_00995 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D E3E12_06440 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D E3E12_00525 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D E3E12_01000 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D E3E12_01015 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D E3E12_02965 PBP1A family penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D E3E12_06175 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D E3E12_00985 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D E3E12_00500 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] C 00552 Teichoic acid biosynthesis [PATH:swf00552] D E3E12_00525 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis [PATH:swf00543] D E3E12_07380 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:swf00730] D E3E12_05205 thiC; phosphomethylpyrimidine synthase ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17] D E3E12_05235 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] D E3E12_03700 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D E3E12_03705 aminotransferase class V-fold PLP-dependent enzyme K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D E3E12_05210 FAD-dependent oxidoreductase K03153 thiO; glycine oxidase [EC:1.4.3.19] D E3E12_01390 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D E3E12_05220 thiazole synthase K03149 thiG; thiazole synthase [EC:2.8.1.10] D E3E12_01330 hypothetical protein K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D E3E12_05225 thiamine phosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D E3E12_08515 thiL; thiamine-phosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16] D E3E12_01810 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:swf00740] D E3E12_04350 ribB; 3,4-dihydroxy-2-butanone-4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D E3E12_04340 ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D E3E12_04355 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D E3E12_04345 riboflavin synthase K00793 ribE; riboflavin synthase [EC:2.5.1.9] D E3E12_03535 ribF; riboflavin biosynthesis protein RibF K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] C 00750 Vitamin B6 metabolism [PATH:swf00750] D E3E12_00355 pdxH; pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5] D E3E12_02030 oxidoreductase K05275 E1.1.1.65; pyridoxine 4-dehydrogenase [EC:1.1.1.65] D E3E12_04800 phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D E3E12_08310 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase PdxA K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262] D E3E12_08305 pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2] D E3E12_06665 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] C 00760 Nicotinate and nicotinamide metabolism [PATH:swf00760] D E3E12_01610 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D E3E12_01500 hypothetical protein K03517 nadA; quinolinate synthase [EC:2.5.1.72] D E3E12_01615 nadA; quinolinate synthase NadA K03517 nadA; quinolinate synthase [EC:2.5.1.72] D E3E12_01605 nadC; carboxylating nicotinate-nucleotide diphosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] D E3E12_06285 nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21] D E3E12_03850 nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D E3E12_03915 NAD(+) synthase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] D E3E12_03235 isochorismatase family protein K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-] D E3E12_07510 NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] D E3E12_02770 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00770 Pantothenate and CoA biosynthesis [PATH:swf00770] D E3E12_04420 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D E3E12_04425 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D E3E12_05905 pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D E3E12_00690 type III pantothenate kinase K03525 coaX; type III pantothenate kinase [EC:2.7.1.33] D E3E12_08565 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D E3E12_03160 coaD; pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D E3E12_00435 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D E3E12_06410 acpS; holo-[acyl-carrier-protein] synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] D E3E12_05070 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] C 00780 Biotin metabolism [PATH:swf00780] D E3E12_03815 methyltransferase domain-containing protein K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197] D E3E12_00185 fabF; beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D E3E12_00195 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D E3E12_06475 fabZ; 3-hydroxyacyl-ACP dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D E3E12_00350 fabI; enoyl-ACP reductase FabI K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D E3E12_03810 alpha/beta fold hydrolase K02170 bioH; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85] D E3E12_00035 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D E3E12_03805 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D E3E12_03800 adenosylmethionine--8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D E3E12_03820 bioD; dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3] D E3E12_00215 bioB; biotin synthase BioB K01012 bioB; biotin synthase [EC:2.8.1.6] D E3E12_00695 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism [PATH:swf00785] D E3E12_00630 lipB; lipoyl(octanoyl) transferase LipB K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181] D E3E12_07185 lipA; lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8] D E3E12_07180 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D E3E12_07165 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D E3E12_07170 pyruvate dehydrogenase complex E1 component subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D E3E12_07175 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D E3E12_02885 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D E3E12_03995 odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] C 00790 Folate biosynthesis [PATH:swf00790] D E3E12_03360 folE; GTP cyclohydrolase I FolE K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D E3E12_03365 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase K13940 sulD; dihydroneopterin aldolase / 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:4.1.2.25 2.7.6.3] D E3E12_03370 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D E3E12_02910 bifunctional folylpolyglutamate synthase/dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D E3E12_04350 ribB; 3,4-dihydroxy-2-butanone-4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D E3E12_03170 anthranilate synthase component I family protein K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85] D E3E12_03250 queE; 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D E3E12_03255 queC; 7-cyano-7-deazaguanine synthase QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D E3E12_05195 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase QueF K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D E3E12_05080 moaA; GTP 3',8-cyclase MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D E3E12_05085 moaC; cyclic pyranopterin monophosphate synthase MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D E3E12_05095 molybdenum cofactor biosynthesis protein MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D E3E12_05075 molybdopterin molybdotransferase MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D E3E12_05090 NTP transferase domain-containing protein K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77] C 00670 One carbon pool by folate [PATH:swf00670] D E3E12_02040 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D E3E12_07260 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D E3E12_06825 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D E3E12_07500 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D E3E12_06545 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D E3E12_04675 FAD-dependent thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] D E3E12_01305 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:swf00860] D E3E12_05585 hemA; 5-aminolevulinate synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37] D E3E12_06295 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D E3E12_05415 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D E3E12_07250 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D E3E12_06695 hemC; hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D E3E12_06700 uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75] D E3E12_04160 uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37] D E3E12_01660 hemN; oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3] D E3E12_04165 hemJ; protoporphyrinogen oxidase HemJ K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-] D E3E12_02870 ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9] D E3E12_00650 AAA domain-containing protein K09882 cobS; cobaltochelatase CobS [EC:6.6.1.2] D E3E12_00655 cobaltochelatase subunit CobT K09883 cobT; cobaltochelatase CobT [EC:6.6.1.2] D E3E12_04125 histidine phosphatase family protein K02226 cobC; alpha-ribazole phosphatase [EC:3.1.3.73] D E3E12_04495 bfr; bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:swf00130] D E3E12_00400 ubiA; 4-hydroxybenzoate polyprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D E3E12_00590 ubiG; bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64] D E3E12_07465 ubiquinone biosynthesis protein UbiH K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-] D E3E12_08570 ubiE; bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201] D E3E12_06650 wrbA; NAD(P)H:quinone oxidoreductase K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:swf00900] D E3E12_01390 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D E3E12_06450 1-deoxy-D-xylulose-5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] D E3E12_07475 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D E3E12_00570 ispG; flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] D E3E12_01110 ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] D E3E12_01385 polyprenyl synthetase family protein K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] D E3E12_00330 polyprenyl synthetase family protein K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D E3E12_06440 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis [PATH:swf00909] D E3E12_06930 shc; squalene--hopene cyclase K06045 shc; squalene-hopene/tetraprenyl-beta-curcumene cyclase [EC:5.4.99.17 4.2.1.129] C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation C 00907 Pinene, camphor and geraniol degradation C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D E3E12_05855 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides C 01055 Biosynthesis of vancomycin group antibiotics B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis C 00332 Carbapenem biosynthesis [PATH:swf00332] D E3E12_00950 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D E3E12_03855 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] C 00261 Monobactam biosynthesis [PATH:swf00261] D E3E12_00585 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D E3E12_02875 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D E3E12_06995 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D E3E12_05720 dihydrodipicolinate synthase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D E3E12_02830 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:swf00521] D E3E12_08050 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D E3E12_00170 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D E3E12_01360 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] C 00524 Neomycin, kanamycin and gentamicin biosynthesis D E3E12_08050 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] C 00525 Acarbose and validamycin biosynthesis C 00401 Novobiocin biosynthesis [PATH:swf00401] D E3E12_06895 prephenate dehydrogenase/arogenate dehydrogenase family protein K00220 tyrC; cyclohexadieny/prephenate dehydrogenase [EC:1.3.1.43 1.3.1.12] D E3E12_01140 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D E3E12_01145 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D E3E12_05850 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis D E3E12_07145 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D E3E12_07150 aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] C 00333 Prodigiosin biosynthesis D E3E12_00200 fabD; ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D E3E12_00195 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D E3E12_00350 fabI; enoyl-ACP reductase FabI K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D E3E12_00190 acyl carrier protein K02078 acpP; acyl carrier protein D E3E12_00040 acyl carrier protein K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites [PATH:swf00999] D E3E12_02840 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D E3E12_00440 aroE; shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] C 00997 Biosynthesis of various other secondary metabolites B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation D E3E12_03695 2Fe-2S iron-sulfur cluster binding domain-containing protein K04755 fdx; ferredoxin, 2Fe-2S C 00627 Aminobenzoate degradation C 00364 Fluorobenzoate degradation [PATH:swf00364] D E3E12_06740 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00625 Chloroalkane and chloroalkene degradation [PATH:swf00625] D E3E12_04380 adhP; alcohol dehydrogenase AdhP K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D E3E12_02495 alcohol dehydrogenase catalytic domain-containing protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:swf00361] D E3E12_06740 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00623 Toluene degradation [PATH:swf00623] D E3E12_06740 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00622 Xylene degradation C 00633 Nitrotoluene degradation [PATH:swf00633] D E3E12_02140 alkene reductase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-] D E3E12_00100 alkene reductase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-] C 00642 Ethylbenzene degradation C 00643 Styrene degradation C 00791 Atrazine degradation C 00930 Caprolactam degradation C 00363 Bisphenol degradation C 00621 Dioxin degradation C 00626 Naphthalene degradation [PATH:swf00626] D E3E12_04380 adhP; alcohol dehydrogenase AdhP K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D E3E12_02495 alcohol dehydrogenase catalytic domain-containing protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:swf03020] D E3E12_01945 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D E3E12_01940 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D E3E12_01795 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D E3E12_06400 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] C 03022 Basal transcription factors C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:swf03010] D E3E12_04935 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D E3E12_06940 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D E3E12_01885 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D E3E12_06325 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D E3E12_01830 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D E3E12_01600 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D E3E12_01930 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D E3E12_01845 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D E3E12_05065 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D E3E12_01920 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D E3E12_01800 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D E3E12_01935 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D E3E12_01805 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D E3E12_01850 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D E3E12_05515 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D E3E12_01165 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D E3E12_01870 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D E3E12_01595 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D E3E12_01895 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D E3E12_08580 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D E3E12_00865 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D E3E12_01965 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D E3E12_01900 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D E3E12_01915 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D E3E12_01910 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D E3E12_01855 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D E3E12_01840 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D E3E12_01955 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D E3E12_01590 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D E3E12_01960 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D E3E12_01970 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D E3E12_05060 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D E3E12_01865 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D E3E12_01820 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D E3E12_01880 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D E3E12_01790 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D E3E12_01835 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D E3E12_01150 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D E3E12_01450 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D E3E12_00935 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D E3E12_01890 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D E3E12_01905 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D E3E12_01860 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D E3E12_03870 50S ribosomal protein L25/general stress protein Ctc K02897 RP-L25; large subunit ribosomal protein L25 D E3E12_00940 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D E3E12_00810 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D E3E12_01875 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D E3E12_01825 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D E3E12_08345 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D E3E12_00850 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D E3E12_07105 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D E3E12_06495 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D E3E12_01455 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D E3E12_03200 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D E3E12_08615 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D E3E12_08600 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:swf00970] D E3E12_04445 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D E3E12_08605 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D E3E12_04150 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D E3E12_01080 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D E3E12_05925 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D E3E12_06860 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D E3E12_06865 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D E3E12_01095 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D E3E12_03245 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D E3E12_08220 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D E3E12_03905 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D E3E12_07055 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D E3E12_07060 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D E3E12_02275 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D E3E12_02615 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D E3E12_03620 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D E3E12_05700 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D E3E12_02160 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D E3E12_04745 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D E3E12_05045 tRNA-His K14226 tRNA-His; tRNA His D E3E12_08610 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D E3E12_00730 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D E3E12_05125 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D E3E12_06580 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D E3E12_00625 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D E3E12_03150 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D E3E12_04055 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D E3E12_00535 tRNA-Met K14230 tRNA-Met; tRNA Met D E3E12_04770 tRNA-Ile K14230 tRNA-Met; tRNA Met D E3E12_08590 tRNA-Met K14230 tRNA-Met; tRNA Met D E3E12_04265 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D E3E12_00830 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D E3E12_02865 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D E3E12_01085 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D E3E12_01175 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D E3E12_08330 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D E3E12_08530 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D E3E12_00895 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D E3E12_05320 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D E3E12_03665 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D E3E12_07460 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D E3E12_03625 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D E3E12_05360 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D E3E12_00700 tRNA-Val K14237 tRNA-Val; tRNA Val D E3E12_07635 tRNA-Val K14237 tRNA-Val; tRNA Val D E3E12_07315 tRNA-Val K14237 tRNA-Val; tRNA Val D E3E12_06295 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D E3E12_05415 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D E3E12_08200 gatA; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D E3E12_08195 gatB; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D E3E12_08205 gatC; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D E3E12_06345 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D E3E12_06205 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D E3E12_06190 glycine--tRNA ligase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D E3E12_06185 glycine--tRNA ligase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D E3E12_04965 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D E3E12_06245 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D E3E12_06310 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D E3E12_00485 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D E3E12_06545 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D E3E12_08440 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D E3E12_02425 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D E3E12_03530 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D E3E12_06760 lysine--tRNA ligase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D E3E12_06225 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D E3E12_00680 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D E3E12_00565 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D E3E12_01445 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D E3E12_01440 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D E3E12_03725 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D E3E12_01420 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:swf03060] D E3E12_01815 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D E3E12_03630 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D E3E12_07130 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D E3E12_08475 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D E3E12_08470 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D E3E12_06390 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D E3E12_06510 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D E3E12_05755 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D E3E12_06705 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D E3E12_01170 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D E3E12_04815 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D E3E12_03540 tatA; twin-arginine translocase TatA/TatE family subunit K03116 tatA; sec-independent protein translocase protein TatA D E3E12_06235 tatB; twin-arginine translocase subunit TatB K03117 tatB; sec-independent protein translocase protein TatB D E3E12_06240 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC D E3E12_06415 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D E3E12_03525 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:swf04122] D E3E12_03700 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D E3E12_03705 aminotransferase class V-fold PLP-dependent enzyme K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D E3E12_04700 sulfurtransferase TusA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D E3E12_01375 sulfurtransferase TusA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D E3E12_03690 mnmA; tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D E3E12_05095 molybdenum cofactor biosynthesis protein MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D E3E12_05080 moaA; GTP 3',8-cyclase MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D E3E12_08425 HesA/MoeB/ThiF family protein K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80] D E3E12_05230 HesA/MoeB/ThiF family protein K21147 moeZR; sulfur-carrier protein adenylyltransferase/sulfurtransferase [EC:2.7.7.80 2.7.7.- 2.8.1.11 2.8.1.-] D E3E12_05085 moaC; cyclic pyranopterin monophosphate synthase MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D E3E12_05215 thiS; sulfur carrier protein ThiS K03154 thiS; sulfur carrier protein C 03050 Proteasome C 03018 RNA degradation [PATH:swf03018] D E3E12_01695 RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D E3E12_06150 ribonuclease E/G K08300 rne; ribonuclease E [EC:3.1.26.12] D E3E12_07115 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D E3E12_05520 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D E3E12_01275 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D E3E12_07265 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D E3E12_04000 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D E3E12_00685 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-] D E3E12_02820 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D E3E12_06750 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D E3E12_05035 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein D E3E12_06840 RNA degradosome polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D E3E12_01705 CCA tRNA nucleotidyltransferase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] B B 09124 Replication and repair C 03030 DNA replication [PATH:swf03030] D E3E12_00430 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D E3E12_02550 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D E3E12_00665 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D E3E12_04895 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D E3E12_00490 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D E3E12_02435 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D E3E12_01520 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D E3E12_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D E3E12_02915 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D E3E12_01630 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D E3E12_04565 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D E3E12_01100 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D E3E12_01745 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D E3E12_01065 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:swf03410] D E3E12_05430 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D E3E12_04395 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D E3E12_08575 mutM; bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D E3E12_01265 DNA-3-methyladenine glycosylase 2 family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D E3E12_07480 hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D E3E12_07085 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D E3E12_06215 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D E3E12_03415 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D E3E12_01065 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:swf03420] D E3E12_07015 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D E3E12_04560 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A D E3E12_06630 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B D E3E12_07095 uvrC; excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C D E3E12_08395 AAA family ATPase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D E3E12_01065 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03430 Mismatch repair [PATH:swf03430] D E3E12_06675 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D E3E12_03515 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D E3E12_08395 AAA family ATPase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D E3E12_05945 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D E3E12_01380 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D E3E12_03415 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D E3E12_04565 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D E3E12_00665 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D E3E12_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D E3E12_04895 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D E3E12_02435 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D E3E12_00490 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D E3E12_00430 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D E3E12_02550 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D E3E12_01520 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D E3E12_01065 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03440 Homologous recombination [PATH:swf03440] D E3E12_03415 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D E3E12_04565 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D E3E12_08465 recF; DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF D E3E12_06950 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D E3E12_04905 recR; recombination protein RecR K06187 recR; recombination protein RecR D E3E12_03390 recA; recombinase RecA K03553 recA; recombination protein RecA D E3E12_05770 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA D E3E12_05775 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D E3E12_05765 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D E3E12_07010 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D E3E12_00665 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D E3E12_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D E3E12_04895 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D E3E12_02435 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D E3E12_00490 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D E3E12_00430 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D E3E12_02550 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D E3E12_01520 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D E3E12_03215 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] C 03450 Non-homologous end-joining C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:swf02010] D E3E12_05300 hypothetical protein K07323 mlaC; phospholipid transport system substrate-binding protein D E3E12_07360 ABC transporter substrate-binding protein K07323 mlaC; phospholipid transport system substrate-binding protein D E3E12_00225 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D E3E12_00520 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D E3E12_03935 mlaD; outer membrane lipid asymmetry maintenance protein MlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D E3E12_00235 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D E3E12_04515 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D E3E12_00230 ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D E3E12_04510 ATP-binding cassette domain-containing protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D E3E12_04535 pstS; phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein D E3E12_03795 pstC; phosphate ABC transporter permease subunit PstC K02037 pstC; phosphate transport system permease protein D E3E12_03790 pstA; phosphate ABC transporter permease PstA K02038 pstA; phosphate transport system permease protein D E3E12_03785 pstB; phosphate ABC transporter ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D E3E12_03070 MetQ/NlpA family ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein D E3E12_03075 MetQ/NlpA family ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein D E3E12_03085 ABC transporter permease K02072 metI; D-methionine transport system permease protein D E3E12_03080 ATP-binding cassette domain-containing protein K02071 metN; D-methionine transport system ATP-binding protein D E3E12_03470 capsule biosynthesis protein K10107 kpsE; capsular polysaccharide transport system permease protein D E3E12_03465 capsule biosynthesis protein K09688 kpsM; capsular polysaccharide transport system permease protein D E3E12_03460 ABC transporter ATP-binding protein K09689 kpsT; capsular polysaccharide transport system ATP-binding protein [EC:7.6.2.12] D E3E12_00675 lipoprotein-releasing ABC transporter permease subunit K09808 lolC_E; lipoprotein-releasing system permease protein D E3E12_00670 ABC transporter ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D E3E12_05640 hypothetical protein K02195 ccmC; heme exporter protein C D E3E12_05465 hypothetical protein K02194 ccmB; heme exporter protein B D E3E12_05470 ccmA; heme ABC exporter ATP-binding protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D E3E12_00145 YjgP/YjgQ family permease K07091 lptF; lipopolysaccharide export system permease protein D E3E12_01540 LptF/LptG family permease K07091 lptF; lipopolysaccharide export system permease protein D E3E12_00150 LptF/LptG family permease K11720 lptG; lipopolysaccharide export system permease protein D E3E12_01545 LptF/LptG family permease K11720 lptG; lipopolysaccharide export system permease protein D E3E12_06555 lptB; LPS export ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D E3E12_01700 ABC transporter ATP-binding protein K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D E3E12_03040 cydC; thiol reductant ABC exporter subunit CydC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC D E3E12_03035 cydD; thiol reductant ABC exporter subunit CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD C 02060 Phosphotransferase system (PTS) C 03070 Bacterial secretion system [PATH:swf03070] D E3E12_08475 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D E3E12_08470 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D E3E12_03630 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D E3E12_07130 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D E3E12_01815 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D E3E12_06390 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D E3E12_06510 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D E3E12_05755 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D E3E12_04815 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D E3E12_06705 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D E3E12_01170 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D E3E12_03540 tatA; twin-arginine translocase TatA/TatE family subunit K03116 tatA; sec-independent protein translocase protein TatA D E3E12_06235 tatB; twin-arginine translocase subunit TatB K03117 tatB; sec-independent protein translocase protein TatB D E3E12_06240 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC B B 09132 Signal transduction C 02020 Two-component system [PATH:swf02020] D E3E12_04535 pstS; phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein D E3E12_02055 Do family serine endopeptidase K04771 degP; serine protease Do [EC:3.4.21.107] D E3E12_02740 PDZ domain-containing protein K04771 degP; serine protease Do [EC:3.4.21.107] D E3E12_07440 Do family serine endopeptidase K04771 degP; serine protease Do [EC:3.4.21.107] D E3E12_01765 efflux RND transporter periplasmic adaptor subunit K07799 mdtA; membrane fusion protein, multidrug efflux system D E3E12_01770 MMPL family transporter K07788 mdtB; multidrug efflux pump D E3E12_01775 MMPL family transporter K07789 mdtC; multidrug efflux pump D E3E12_00005 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D E3E12_06765 lysylphosphatidylglycerol synthetase family protein K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3] D E3E12_04985 HAMP domain-containing protein K14980 chvG; two-component system, OmpR family, sensor histidine kinase ChvG [EC:2.7.13.3] D E3E12_04980 response regulator transcription factor K14981 chvI; two-component system, OmpR family, response regulator ChvI D E3E12_05610 NAD-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D E3E12_01240 nitrate reductase subunit alpha K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-] D E3E12_01245 narH; nitrate reductase subunit beta K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-] D E3E12_01255 narI; respiratory nitrate reductase subunit gamma K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-] D E3E12_01250 narJ; nitrate reductase molybdenum cofactor assembly chaperone K00373 narJ; nitrate reductase molybdenum cofactor assembly chaperone NarJ/NarW D E3E12_02660 fdnG; formate dehydrogenase-N subunit alpha K08348 fdnG; formate dehydrogenase-N, alpha subunit [EC:1.17.5.3] D E3E12_06670 HD domain-containing protein K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59] D E3E12_04435 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D E3E12_05025 HAMP domain-containing protein K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] D E3E12_05030 sigma-54-dependent Fis family transcriptional regulator K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX D E3E12_05830 response regulator transcription factor K13584 ctrA; two-component system, cell cycle response regulator CtrA D E3E12_02695 petA; ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D E3E12_02705 hypothetical protein K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit D E3E12_02700 cytochrome b K00410 fbcH; ubiquinol-cytochrome c reductase cytochrome b/c1 subunit D E3E12_03045 cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D E3E12_03050 cydB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D E3E12_03495 polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein D E3E12_07520 low molecular weight phosphotyrosine protein phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48] C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis D E3E12_02695 petA; ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:swf02024] D E3E12_05035 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein D E3E12_07145 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D E3E12_07150 aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D E3E12_06280 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D E3E12_04995 transcriptional repressor K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D E3E12_04340 ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D E3E12_03760 efflux transporter outer membrane subunit K18139 oprM; outer membrane protein, multidrug efflux system D E3E12_06510 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D E3E12_03630 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D E3E12_07130 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D E3E12_01815 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D E3E12_06390 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D E3E12_05755 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D E3E12_04815 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D E3E12_06705 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D E3E12_01170 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis C 02040 Flagellar assembly [PATH:swf02040] D E3E12_05835 hypothetical protein K02413 fliJ; flagellar protein FliJ D E3E12_01625 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D E3E12_07115 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:swf01501] D E3E12_03770 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D E3E12_03765 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump D E3E12_03760 efflux transporter outer membrane subunit K18139 oprM; outer membrane protein, multidrug efflux system D E3E12_02965 PBP1A family penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D E3E12_06175 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D E3E12_00985 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] C 01502 Vancomycin resistance [PATH:swf01502] D E3E12_01030 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D E3E12_00050 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D E3E12_00995 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D E3E12_01000 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D E3E12_01015 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:swf01503] D E3E12_06155 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D E3E12_02055 Do family serine endopeptidase K04771 degP; serine protease Do [EC:3.4.21.107] D E3E12_02740 PDZ domain-containing protein K04771 degP; serine protease Do [EC:3.4.21.107] D E3E12_07440 Do family serine endopeptidase K04771 degP; serine protease Do [EC:3.4.21.107] D E3E12_03770 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D E3E12_03765 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump D E3E12_06480 lpxA; acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D E3E12_06765 lysylphosphatidylglycerol synthetase family protein K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:swf01000] C 01001 Protein kinases [BR:swf01001] D E3E12_04985 HAMP domain-containing protein K14980 chvG; two-component system, OmpR family, sensor histidine kinase ChvG [EC:2.7.13.3] D E3E12_05025 HAMP domain-containing protein K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:swf01009] D E3E12_03985 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D E3E12_04215 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG D E3E12_04405 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 01002 Peptidases and inhibitors [BR:swf01002] D E3E12_03525 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] D E3E12_06875 guaA; glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D E3E12_05600 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D E3E12_08445 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D E3E12_02545 protein deglycase HchA K05523 hchA; D-lactate dehydratase / protein deglycase [EC:4.2.1.130 3.5.1.124] D E3E12_06585 M3 family oligoendopeptidase K08602 pepF; oligoendopeptidase F [EC:3.4.24.-] D E3E12_00210 M13 family metallopeptidase K07386 pepO; putative endopeptidase [EC:3.4.24.-] D E3E12_04940 insulinase family protein K07263 pqqL; zinc protease [EC:3.4.24.-] D E3E12_06795 leucyl aminopeptidase family protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D E3E12_01525 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D E3E12_07090 membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D E3E12_06535 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D E3E12_04880 map; type I methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D E3E12_08415 aminopeptidase P family protein K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D E3E12_05845 aminopeptidase K19689 ampS; aminopeptidase [EC:3.4.11.-] D E3E12_05820 hflB; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D E3E12_06455 rseP; RIP metalloprotease RseP K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D E3E12_02055 Do family serine endopeptidase K04771 degP; serine protease Do [EC:3.4.21.107] D E3E12_02740 PDZ domain-containing protein K04771 degP; serine protease Do [EC:3.4.21.107] D E3E12_07440 Do family serine endopeptidase K04771 degP; serine protease Do [EC:3.4.21.107] D E3E12_03185 S9 family peptidase K01354 ptrB; oligopeptidase B [EC:3.4.21.83] D E3E12_00500 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D E3E12_00720 clpP; ATP-dependent Clp endopeptidase proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D E3E12_03400 ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D E3E12_00710 endopeptidase La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D E3E12_06415 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D E3E12_01690 S41 family peptidase K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D E3E12_03380 gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D E3E12_04885 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] C 01003 Glycosyltransferases [BR:swf01003] D E3E12_04090 polyprenol monophosphomannose synthase K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83] D E3E12_05295 glycosyltransferase K00720 UGCG; ceramide glucosyltransferase [EC:2.4.1.80] D E3E12_02965 PBP1A family penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] C 01005 Lipopolysaccharide biosynthesis proteins [BR:swf01005] D E3E12_06480 lpxA; acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D E3E12_01435 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D E3E12_01050 hypothetical protein K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D E3E12_06470 lpxD; UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D E3E12_06485 DUF1009 domain-containing protein K09949 lpxI; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D E3E12_00365 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D E3E12_00370 lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D E3E12_00360 hypothetical protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D E3E12_07120 kdsA; 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D E3E12_06985 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D E3E12_06570 KpsF/GutQ family sugar-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D E3E12_00425 glycosyltransferase family 9 protein K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25] D E3E12_04655 rfaE2; D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70] D E3E12_03885 rfaD; ADP-glyceromanno-heptose 6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:swf01011] D E3E12_02785 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D E3E12_01025 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D E3E12_01020 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D E3E12_01005 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D E3E12_00990 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D E3E12_01030 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D E3E12_00050 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D E3E12_00325 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D E3E12_01000 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D E3E12_01015 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D E3E12_00525 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D E3E12_06680 murJ; murein biosynthesis integral membrane protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase D E3E12_02965 PBP1A family penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D E3E12_06175 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D E3E12_00985 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D E3E12_00500 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D E3E12_00505 lytic murein transglycosylase K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29] D E3E12_00180 mltG; endolytic transglycosylase MltG K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] D E3E12_05445 septal ring lytic transglycosylase RlpA family protein K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D E3E12_06155 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] C 01004 Lipid biosynthesis proteins [BR:swf01004] D E3E12_00200 fabD; ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D E3E12_00840 ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D E3E12_00185 fabF; beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D E3E12_00195 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D E3E12_06475 fabZ; 3-hydroxyacyl-ACP dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D E3E12_00350 fabI; enoyl-ACP reductase FabI K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D E3E12_00580 2-nitropropane dioxygenase K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9] D E3E12_00045 fatty acyl-AMP ligase K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D E3E12_00845 plsX; phosphate acyltransferase PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D E3E12_05400 plsY; glycerol-3-phosphate 1-O-acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D E3E12_01490 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins C 01006 Prenyltransferases [BR:swf01006] D E3E12_01385 polyprenyl synthetase family protein K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] D E3E12_00330 polyprenyl synthetase family protein K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D E3E12_06440 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D E3E12_04410 miaA; tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D E3E12_00400 ubiA; 4-hydroxybenzoate polyprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] C 01007 Amino acid related enzymes [BR:swf01007] D E3E12_06760 lysine--tRNA ligase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D E3E12_06295 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D E3E12_05415 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D E3E12_00470 tRNA glutamyl-Q(34) synthetase GluQRS K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D E3E12_03725 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D E3E12_01420 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D E3E12_06310 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D E3E12_06225 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D E3E12_00485 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D E3E12_03530 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D E3E12_08440 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D E3E12_02425 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D E3E12_06205 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D E3E12_00565 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D E3E12_06190 glycine--tRNA ligase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D E3E12_06185 glycine--tRNA ligase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D E3E12_06245 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D E3E12_00680 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D E3E12_04965 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D E3E12_06345 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D E3E12_01445 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D E3E12_01440 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D E3E12_01140 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D E3E12_01145 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D E3E12_05850 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D E3E12_05585 hemA; 5-aminolevulinate synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37] D E3E12_00035 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D E3E12_03805 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D E3E12_03555 aspartate aminotransferase family protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D E3E12_03800 adenosylmethionine--8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D E3E12_05070 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D E3E12_04800 phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D E3E12_06805 DegT/DnrJ/EryC1/StrS family aminotransferase K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins [BR:swf00194] D E3E12_03595 atpC; ATP synthase F1 subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D E3E12_03600 atpD; F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D E3E12_03605 F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D E3E12_03610 atpA; F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D E3E12_03615 atpH; ATP synthase F1 subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D E3E12_03955 hypothetical protein K02109 ATPF0B; F-type H+-transporting ATPase subunit b D E3E12_03960 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b D E3E12_03945 F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a D E3E12_03940 hypothetical protein K02116 atpI; ATP synthase protein I B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:swf03000] D E3E12_03685 hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D E3E12_03130 TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D E3E12_02015 TetR/AcrR family transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor D E3E12_04710 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D E3E12_04995 transcriptional repressor K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D E3E12_04330 helix-turn-helix domain-containing protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D E3E12_07040 Rrf2 family transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor D E3E12_02585 Rrf2 family transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor D E3E12_00065 helix-turn-helix transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D E3E12_00695 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D E3E12_06140 transcriptional regulator K07724 ner; Ner family transcriptional regulator D E3E12_04050 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D E3E12_00255 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D E3E12_04845 hypothetical protein K07735 algH; putative transcriptional regulator D E3E12_05315 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D E3E12_08505 nrdR; transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR C 03021 Transcription machinery [BR:swf03021] D E3E12_01795 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D E3E12_01945 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D E3E12_01940 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D E3E12_06400 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D E3E12_01625 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D E3E12_05340 rpoH; RNA polymerase sigma factor RpoH K03089 rpoH; RNA polymerase sigma-32 factor D E3E12_05490 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA D E3E12_08510 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB D E3E12_03635 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG D E3E12_05315 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D E3E12_01650 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA D E3E12_06635 greB; transcription elongation factor GreB K04760 greB; transcription elongation factor GreB D E3E12_04000 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho C 03019 Messenger RNA biogenesis [BR:swf03019] D E3E12_06150 ribonuclease E/G K08300 rne; ribonuclease E [EC:3.1.26.12] D E3E12_06420 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D E3E12_00685 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-] D E3E12_01275 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D E3E12_07265 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D E3E12_07115 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D E3E12_05520 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D E3E12_04000 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D E3E12_02820 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D E3E12_06750 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D E3E12_05035 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein D E3E12_06840 RNA degradosome polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D E3E12_01705 CCA tRNA nucleotidyltransferase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] D E3E12_01695 RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D E3E12_04990 rapZ; RNase adapter RapZ K06958 rapZ; RNase adapter protein RapZ D E3E12_02745 ATP-dependent helicase HrpB K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6] C 03041 Spliceosome C 03011 Ribosome [BR:swf03011] D E3E12_04935 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D E3E12_06940 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D E3E12_01885 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D E3E12_06325 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D E3E12_01830 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D E3E12_01600 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D E3E12_01930 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D E3E12_01845 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D E3E12_05065 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D E3E12_01920 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D E3E12_01800 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D E3E12_01935 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D E3E12_01805 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D E3E12_01850 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D E3E12_05515 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D E3E12_01165 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D E3E12_01870 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D E3E12_01595 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D E3E12_01895 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D E3E12_08580 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D E3E12_00865 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D E3E12_01965 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D E3E12_01900 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D E3E12_01915 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D E3E12_01910 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D E3E12_01855 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D E3E12_01840 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D E3E12_01590 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D E3E12_01960 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D E3E12_01970 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D E3E12_01955 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D E3E12_05060 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D E3E12_01865 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D E3E12_01820 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D E3E12_01880 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D E3E12_01790 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D E3E12_01835 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D E3E12_01150 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D E3E12_01450 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D E3E12_00935 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D E3E12_01890 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D E3E12_01905 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D E3E12_01860 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D E3E12_00940 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D E3E12_00810 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D E3E12_01875 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D E3E12_01825 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D E3E12_08345 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D E3E12_00850 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D E3E12_07105 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D E3E12_06495 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D E3E12_01455 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D E3E12_03200 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D E3E12_03870 50S ribosomal protein L25/general stress protein Ctc K02897 RP-L25; large subunit ribosomal protein L25 D E3E12_08615 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D E3E12_08600 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:swf03009] D E3E12_06420 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D E3E12_06425 GTPase Era K03595 era; GTPase D E3E12_00945 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-] D E3E12_05315 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D E3E12_05490 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA D E3E12_08510 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB D E3E12_03635 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG D E3E12_01560 rsmA; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D E3E12_07075 RsmB/NOP family class I SAM-dependent RNA methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D E3E12_05550 RsmB/NOP family class I SAM-dependent RNA methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D E3E12_02460 RsmD family RNA methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D E3E12_00395 16S rRNA (uracil(1498)-N(3))-methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D E3E12_04040 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D E3E12_00975 rsmH; 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D E3E12_00380 rsmI; 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D E3E12_01395 TlyA family RNA methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D E3E12_05355 rlmB; 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D E3E12_07050 RlmE family RNA methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D E3E12_03840 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D E3E12_01400 rlmN; 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D E3E12_00750 class I SAM-dependent RNA methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D E3E12_02470 RluA family pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D E3E12_02455 rRNA pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D E3E12_05670 RluA family pseudouridine synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D E3E12_05345 RluA family pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D E3E12_04695 GNAT family N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D E3E12_01160 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM D E3E12_08410 50S ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] D E3E12_06150 ribonuclease E/G K08300 rne; ribonuclease E [EC:3.1.26.12] D E3E12_08210 ruvX; Holliday junction resolvase RuvX K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D E3E12_00405 ribosome biogenesis GTPase Der K03977 engA; GTPase D E3E12_05040 hflX; GTPase HflX K03665 hflX; GTPase D E3E12_01535 threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D E3E12_06405 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D E3E12_05505 rbfA; 30S ribosome-binding factor RbfA K02834 rbfA; ribosome-binding factor A D E3E12_05485 rimP; ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP D E3E12_03845 rsfS; ribosome silencing factor K09710 ybeB; ribosome-associated protein D E3E12_00295 ybeY; rRNA maturation RNase YbeY K07042 ybeY; probable rRNA maturation factor D E3E12_03860 ychF; redox-regulated ATPase YchF K06942 ychF; ribosome-binding ATPase C 03016 Transfer RNA biogenesis [BR:swf03016] D E3E12_06295 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D E3E12_05415 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D E3E12_00680 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D E3E12_03530 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D E3E12_02425 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D E3E12_00485 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D E3E12_06225 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D E3E12_06205 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D E3E12_06345 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D E3E12_04965 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D E3E12_06245 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D E3E12_06310 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D E3E12_08440 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D E3E12_00565 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D E3E12_01445 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D E3E12_01440 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D E3E12_03725 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D E3E12_01420 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D E3E12_02220 HIT domain-containing protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D E3E12_02845 trmB; tRNA (guanosine(46)-N7)-methyltransferase TrmB K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D E3E12_06540 truA; tRNA pseudouridine(38-40) synthase TruA K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D E3E12_05510 truB; tRNA pseudouridine(55) synthase TruB K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D E3E12_03700 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D E3E12_03705 aminotransferase class V-fold PLP-dependent enzyme K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D E3E12_01535 threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D E3E12_04410 miaA; tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D E3E12_04030 mnmE; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D E3E12_04035 mnmG; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D E3E12_01530 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D E3E12_06500 ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D E3E12_02960 ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56] D E3E12_05265 rnd; ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5] D E3E12_06575 ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5] D E3E12_06770 hypothetical protein K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58] D E3E12_04775 ettA; energy-dependent translational throttle protein EttA K06020 ettA; energy-dependent translational throttle protein EttA D E3E12_06760 lysine--tRNA ligase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D E3E12_06190 glycine--tRNA ligase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D E3E12_06185 glycine--tRNA ligase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D E3E12_00470 tRNA glutamyl-Q(34) synthetase GluQRS K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D E3E12_02685 aminoacyl-tRNA deacylase K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-] D E3E12_02235 nucleoside deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D E3E12_05020 dusB; tRNA dihydrouridine synthase DusB K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D E3E12_00285 miaB; tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D E3E12_04820 MiaB/RimO family radical SAM methylthiotransferase K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5] D E3E12_06305 RNA methyltransferase K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-] D E3E12_01155 trmD; tRNA (guanosine(37)-N1)-methyltransferase TrmD K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D E3E12_02470 RluA family pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D E3E12_03690 mnmA; tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D E3E12_04700 sulfurtransferase TusA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D E3E12_01375 sulfurtransferase TusA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D E3E12_07355 queA; tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D E3E12_03255 queC; 7-cyano-7-deazaguanine synthase QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D E3E12_03250 queE; 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D E3E12_05195 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase QueF K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D E3E12_05110 epoxyqueuosine reductase QueH K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6] D E3E12_07350 tgt; tRNA guanosine(34) transglycosylase Tgt K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D E3E12_05815 tilS; tRNA lysidine(34) synthetase TilS K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D E3E12_04690 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D E3E12_06690 tsaD; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D E3E12_05245 tsaE; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D E3E12_05520 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:swf03012] D E3E12_05500 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D E3E12_04960 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D E3E12_06815 ABC-F family ATP-binding cassette domain-containing protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 D E3E12_06945 elongation factor Ts K02357 tsf; elongation factor Ts D E3E12_01925 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D E3E12_00805 fusA; elongation factor G K02355 fusA; elongation factor G D E3E12_00560 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1 D E3E12_06435 ribosome recycling factor K02838 frr; ribosome recycling factor D E3E12_00545 prmC; peptide chain release factor N(5)-glutamine methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D E3E12_03865 aminoacyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D E3E12_04285 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D E3E12_01355 efp; elongation factor P K02356 efp; elongation factor P D E3E12_01340 genX; EF-P lysine aminoacylase GenX K04568 epmA; elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-] D E3E12_02970 peptide chain release factor 2 K02836 prfB; peptide chain release factor 2 D E3E12_06330 GTP-binding protein K02837 prfC; peptide chain release factor 3 C 03110 Chaperones and folding catalysts [BR:swf03110] D E3E12_04865 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA D E3E12_04850 clpB; ATP-dependent chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB D E3E12_00715 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D E3E12_04215 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG D E3E12_02820 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D E3E12_06750 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D E3E12_02825 dnaJ; molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ D E3E12_07430 DnaJ domain-containing protein K05801 djlA; DnaJ like chaperone protein D E3E12_03565 Hsp33 family molecular chaperone HslO K04083 hslO; molecular chaperone Hsp33 D E3E12_04975 grpE; nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE D E3E12_06785 hypothetical protein K04762 hslR; ribosome-associated heat shock protein Hsp15 D E3E12_06745 co-chaperone GroES K04078 groES; chaperonin GroES D E3E12_02055 Do family serine endopeptidase K04771 degP; serine protease Do [EC:3.4.21.107] D E3E12_02740 PDZ domain-containing protein K04771 degP; serine protease Do [EC:3.4.21.107] D E3E12_07440 Do family serine endopeptidase K04771 degP; serine protease Do [EC:3.4.21.107] D E3E12_05820 hflB; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D E3E12_03945 F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a D E3E12_06705 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D E3E12_07140 hypothetical protein K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8] D E3E12_01415 FKBP-type peptidyl-prolyl cis-trans isomerase K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8] D E3E12_05750 peptidylprolyl isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] D E3E12_01555 peptidylprolyl isomerase K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8] D E3E12_05260 trxA; thioredoxin K03671 TXN; thioredoxin D E3E12_04740 tetratricopeptide repeat protein K05838 ybbN; putative thioredoxin D E3E12_00605 grxC; glutaredoxin 3 K03676 grxC; glutaredoxin 3 D E3E12_07235 grxD; Grx4 family monothiol glutaredoxin K07390 grxD; monothiol glutaredoxin D E3E12_05620 hypothetical protein K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE C 04131 Membrane trafficking [BR:swf04131] D E3E12_06820 nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D E3E12_05330 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D E3E12_06890 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D E3E12_04215 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG D E3E12_00175 lipid-binding SYLF domain-containing protein K20523 SH3YL1; SH3 domain-containing YSC84-like protein 1 C 04121 Ubiquitin system C 03051 Proteasome [BR:swf03051] D E3E12_04215 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG C 03032 DNA replication proteins [BR:swf03032] D E3E12_01100 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D E3E12_00705 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D E3E12_05900 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D E3E12_00005 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D E3E12_02915 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D E3E12_01630 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D E3E12_04565 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D E3E12_00665 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D E3E12_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D E3E12_01520 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D E3E12_02435 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D E3E12_00490 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D E3E12_00430 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D E3E12_02550 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D E3E12_04895 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D E3E12_01745 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D E3E12_01065 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D E3E12_03165 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D E3E12_08460 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D E3E12_06955 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D E3E12_05370 type IIA DNA topoisomerase subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D E3E12_05390 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:swf03036] D E3E12_06420 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D E3E12_00705 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D E3E12_05900 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D E3E12_00005 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D E3E12_05035 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein D E3E12_01040 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA D E3E12_00985 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D E3E12_02465 DNA translocase FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D E3E12_01035 FtsQ-type POTRA domain-containing protein K03589 ftsQ; cell division protein FtsQ D E3E12_01010 cell division protein FtsW K03588 ftsW; cell division protein FtsW D E3E12_01045 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D E3E12_06155 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D E3E12_03770 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D E3E12_02250 minC; septum formation inhibitor MinC K03610 minC; septum site-determining protein MinC D E3E12_02260 minD; septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D E3E12_02265 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor D E3E12_06160 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D E3E12_06165 rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC D E3E12_06180 rodA; rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA D E3E12_04045 ParA family protein K03496 parA; chromosome partitioning protein D E3E12_04050 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D E3E12_06955 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D E3E12_05370 type IIA DNA topoisomerase subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D E3E12_04035 mnmG; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D E3E12_04040 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D E3E12_07445 Mrp/NBP35 family ATP-binding protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D E3E12_07650 cell filamentation protein Fic K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108] D E3E12_06515 YihA family ribosome biogenesis GTP-binding protein K03978 engB; GTP-binding protein C 03400 DNA repair and recombination proteins [BR:swf03400] D E3E12_04025 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D E3E12_04395 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D E3E12_05430 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D E3E12_06385 (deoxy)nucleoside triphosphate pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D E3E12_08560 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D E3E12_07480 hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D E3E12_01265 DNA-3-methyladenine glycosylase 2 family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D E3E12_08575 mutM; bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D E3E12_07085 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D E3E12_06215 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D E3E12_03415 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D E3E12_01065 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D E3E12_04560 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A D E3E12_06630 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B D E3E12_07095 uvrC; excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C D E3E12_08395 AAA family ATPase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D E3E12_01945 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D E3E12_01940 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D E3E12_01795 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D E3E12_06400 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D E3E12_07015 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D E3E12_06675 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D E3E12_03515 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D E3E12_05945 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D E3E12_01380 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D E3E12_00665 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D E3E12_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D E3E12_01520 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D E3E12_02435 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D E3E12_00490 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D E3E12_00430 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D E3E12_02550 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D E3E12_04895 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D E3E12_04565 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D E3E12_03390 recA; recombinase RecA K03553 recA; recombination protein RecA D E3E12_05770 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA D E3E12_05775 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D E3E12_05765 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D E3E12_03215 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D E3E12_04505 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms D E3E12_08465 recF; DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF D E3E12_07010 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D E3E12_06950 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D E3E12_04905 recR; recombination protein RecR K06187 recR; recombination protein RecR D E3E12_01060 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D E3E12_05255 AAA family ATPase K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] D E3E12_05250 addB; double-strand break repair protein AddB K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D E3E12_03305 cas1e; type I-E CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 D E3E12_02335 cas1f; type I-F CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 D E3E12_03165 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D E3E12_08460 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D E3E12_05390 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D E3E12_00705 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D E3E12_05900 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D E3E12_03550 regulatory protein RecX K03565 recX; regulatory protein D E3E12_06755 ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D E3E12_02340 DEAD/DEAH box helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D E3E12_00340 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D E3E12_00335 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C 03029 Mitochondrial biogenesis [BR:swf03029] D E3E12_05500 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D E3E12_04960 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D E3E12_06945 elongation factor Ts K02357 tsf; elongation factor Ts D E3E12_01925 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D E3E12_00805 fusA; elongation factor G K02355 fusA; elongation factor G D E3E12_06790 DNA helicase K17675 SUPV3L1; ATP-dependent RNA helicase SUPV3L1/SUV3 [EC:5.6.2.6] D E3E12_06260 RNA helicase K17675 SUPV3L1; ATP-dependent RNA helicase SUPV3L1/SUV3 [EC:5.6.2.6] D E3E12_06425 GTPase Era K03595 era; GTPase D E3E12_03725 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D E3E12_02425 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D E3E12_06205 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D E3E12_06225 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D E3E12_08200 gatA; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D E3E12_08195 gatB; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D E3E12_08205 gatC; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D E3E12_02390 DNA/RNA non-specific endonuclease K01173 ENDOG; endonuclease G, mitochondrial D E3E12_04565 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D E3E12_06460 bamA; outer membrane protein assembly factor BamA K07277 SAM50; outer membrane protein insertion porin family D E3E12_02820 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D E3E12_04975 grpE; nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE D E3E12_06750 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D E3E12_06745 co-chaperone GroES K04078 groES; chaperonin GroES D E3E12_02825 dnaJ; molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ D E3E12_03700 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D E3E12_03705 aminotransferase class V-fold PLP-dependent enzyme K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D E3E12_07235 grxD; Grx4 family monothiol glutaredoxin K07390 grxD; monothiol glutaredoxin D E3E12_04680 NifU family protein K22074 NFU1; NFU1 iron-sulfur cluster scaffold homolog, mitochondrial D E3E12_00640 BolA family transcriptional regulator K22066 BOLA1; BolA-like protein 1 D E3E12_07445 Mrp/NBP35 family ATP-binding protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D E3E12_06510 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D E3E12_04215 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:swf02000] D E3E12_01700 ABC transporter ATP-binding protein K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D E3E12_00815 ABC transporter ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D E3E12_03040 cydC; thiol reductant ABC exporter subunit CydC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC D E3E12_03035 cydD; thiol reductant ABC exporter subunit CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD D E3E12_08495 ABC-F family ATP-binding cassette domain-containing protein K15738 uup; ABC transport system ATP-binding/permease protein D E3E12_00225 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D E3E12_00520 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D E3E12_03935 mlaD; outer membrane lipid asymmetry maintenance protein MlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D E3E12_00235 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D E3E12_04515 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D E3E12_00230 ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D E3E12_04510 ATP-binding cassette domain-containing protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D E3E12_05300 hypothetical protein K07323 mlaC; phospholipid transport system substrate-binding protein D E3E12_07360 ABC transporter substrate-binding protein K07323 mlaC; phospholipid transport system substrate-binding protein D E3E12_04535 pstS; phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein D E3E12_03795 pstC; phosphate ABC transporter permease subunit PstC K02037 pstC; phosphate transport system permease protein D E3E12_03790 pstA; phosphate ABC transporter permease PstA K02038 pstA; phosphate transport system permease protein D E3E12_03785 pstB; phosphate ABC transporter ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D E3E12_03070 MetQ/NlpA family ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein D E3E12_03075 MetQ/NlpA family ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein D E3E12_03085 ABC transporter permease K02072 metI; D-methionine transport system permease protein D E3E12_03080 ATP-binding cassette domain-containing protein K02071 metN; D-methionine transport system ATP-binding protein D E3E12_05480 ABC transporter permease subunit K02029 ABC.PA.P; polar amino acid transport system permease protein D E3E12_06720 ABC transporter substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D E3E12_04950 ABC transporter substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D E3E12_06725 iron ABC transporter permease K02015 ABC.FEV.P; iron complex transport system permease protein D E3E12_06730 ABC transporter ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D E3E12_04140 hypothetical protein K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein D E3E12_04130 metal ABC transporter permease K02075 ABC.ZM.P; zinc/manganese transport system permease protein D E3E12_04135 ATP-binding cassette domain-containing protein K02074 ABC.ZM.A; zinc/manganese transport system ATP-binding protein D E3E12_03465 capsule biosynthesis protein K09688 kpsM; capsular polysaccharide transport system permease protein D E3E12_03470 capsule biosynthesis protein K10107 kpsE; capsular polysaccharide transport system permease protein D E3E12_03460 ABC transporter ATP-binding protein K09689 kpsT; capsular polysaccharide transport system ATP-binding protein [EC:7.6.2.12] D E3E12_00145 YjgP/YjgQ family permease K07091 lptF; lipopolysaccharide export system permease protein D E3E12_01540 LptF/LptG family permease K07091 lptF; lipopolysaccharide export system permease protein D E3E12_00150 LptF/LptG family permease K11720 lptG; lipopolysaccharide export system permease protein D E3E12_01545 LptF/LptG family permease K11720 lptG; lipopolysaccharide export system permease protein D E3E12_06555 lptB; LPS export ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D E3E12_00675 lipoprotein-releasing ABC transporter permease subunit K09808 lolC_E; lipoprotein-releasing system permease protein D E3E12_00670 ABC transporter ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D E3E12_05640 hypothetical protein K02195 ccmC; heme exporter protein C D E3E12_05465 hypothetical protein K02194 ccmB; heme exporter protein B D E3E12_05470 ccmA; heme ABC exporter ATP-binding protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D E3E12_00770 sufC; Fe-S cluster assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein D E3E12_04245 bile acid:sodium symporter K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7 D E3E12_06315 MATE family efflux transporter K26939 norM; MATE family, multidrug efflux pump D E3E12_04180 multidrug transporter K26937 dinF; MATE family, multidrug efflux pump D E3E12_05000 sugar porter family MFS transporter K08137 galP; MFS transporter, SP family, galactose:H+ symporter D E3E12_05580 MFS transporter K08178 JEN; MFS transporter, SHS family, lactate transporter D E3E12_01235 MFS transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D E3E12_02755 multidrug effflux MFS transporter K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D E3E12_07670 multidrug effflux MFS transporter K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D E3E12_06320 MFS transporter K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein D E3E12_02020 DHA2 family efflux MFS transporter permease subunit K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein D E3E12_07305 MFS transporter K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein D E3E12_04500 MFS transporter K08169 yebQ; MFS transporter, DHA2 family, multidrug resistance protein D E3E12_05365 aquaporin family protein K06188 aqpZ; aquaporin Z D E3E12_06300 ATP-sensitive potassium channel protein K08715 IRPC; inward rectifier potassium channel D E3E12_03065 ammonium transporter K03320 amt; ammonium transporter, Amt family D E3E12_00075 glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D E3E12_02245 glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D E3E12_02080 mscL; large-conductance mechanosensitive channel protein MscL K03282 mscL; large conductance mechanosensitive channel D E3E12_05005 mechanosensitive ion channel K05802 mscK; potassium-dependent mechanosensitive channel D E3E12_03005 mechanosensitive ion channel family protein K22044 ybiO; moderate conductance mechanosensitive channel D E3E12_02985 MotA/TolQ/ExbB proton channel family protein K03561 exbB; biopolymer transport protein ExbB D E3E12_02990 biopolymer transporter ExbD K03559 exbD; biopolymer transport protein ExbD D E3E12_02995 biopolymer transporter ExbD K03559 exbD; biopolymer transport protein ExbD D E3E12_05785 tolQ; protein TolQ K03562 tolQ; biopolymer transport protein TolQ D E3E12_05790 tolR; protein TolR K03560 tolR; biopolymer transport protein TolR D E3E12_03980 magnesium transporter K16074 zntB; zinc transporter D E3E12_02070 crcB; fluoride efflux transporter CrcB K06199 crcB; fluoride exporter D E3E12_00250 hypothetical protein K08994 yneE; ion channel-forming bestrophin family protein D E3E12_05310 HlyC/CorC family transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family D E3E12_01070 HlyC/CorC family transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family D E3E12_06350 OmpA family protein K03286 TC.OOP; OmpA-OmpF porin, OOP family D E3E12_05385 OmpA family protein K03286 TC.OOP; OmpA-OmpF porin, OOP family D E3E12_02525 hypothetical protein K19231 bmaC; fibronectin-binding autotransporter adhesin D E3E12_04485 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D E3E12_01195 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D E3E12_05100 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D E3E12_03095 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D E3E12_03350 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D E3E12_03740 TonB-dependent receptor plug domain-containing protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein D E3E12_03760 efflux transporter outer membrane subunit K18139 oprM; outer membrane protein, multidrug efflux system D E3E12_03495 polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein D E3E12_05180 carbohydrate porin K07267 oprB; porin D E3E12_03340 carbohydrate porin K07267 oprB; porin D E3E12_06460 bamA; outer membrane protein assembly factor BamA K07277 SAM50; outer membrane protein insertion porin family D E3E12_00410 PQQ-binding-like beta-propeller repeat protein K17713 bamB; outer membrane protein assembly factor BamB D E3E12_00275 BamA/TamA family outer membrane protein K07278 tamA; translocation and assembly module TamA D E3E12_00270 hypothetical protein K09800 tamB; translocation and assembly module TamB D E3E12_06560 hypothetical protein K09774 lptA; lipopolysaccharide export system protein LptA D E3E12_06565 LPS export ABC transporter periplasmic protein LptC K11719 lptC; lipopolysaccharide export system protein LptC D E3E12_01550 lptD; LPS assembly protein LptD K04744 lptD; LPS-assembly protein D E3E12_02430 hypothetical protein K03643 lptE; LPS-assembly lipoprotein D E3E12_00300 HlyC/CorC family transporter K06189 corC; hemolysin (HlyC) family protein D E3E12_03060 amino acid permease K11735 gabP; GABA permease D E3E12_03775 amino acid permease K11738 ansP; L-asparagine permease D E3E12_05570 cation transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein D E3E12_04315 efflux RND transporter permease subunit K15726 czcA; heavy metal efflux system protein D E3E12_03765 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump D E3E12_01770 MMPL family transporter K07788 mdtB; multidrug efflux pump D E3E12_01775 MMPL family transporter K07789 mdtC; multidrug efflux pump D E3E12_04555 multidrug efflux SMR transporter K03297 emrE; small multidrug resistance pump D E3E12_01210 EamA family transporter K08978 TC.BAT1; bacterial/archaeal transporter family protein D E3E12_03020 YnfA family protein K09771 TC.SMR3; small multidrug resistance family-3 protein D E3E12_04210 Na+/H+ antiporter NhaA K03313 nhaA; Na+:H+ antiporter, NhaA family D E3E12_00060 cyclic nucleotide-binding domain-containing protein K03316 nhaP; Na+:H+ antiporter D E3E12_00800 voltage-gated chloride channel family protein K03281 clcA; chloride channel protein, CIC family D E3E12_07535 SulP family inorganic anion transporter K03321 TC.SULP; sulfate permease, SulP family D E3E12_00070 arsenic transporter K03893 arsB; arsenical pump membrane protein D E3E12_06680 murJ; murein biosynthesis integral membrane protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase D E3E12_05540 potassium transporter Kup K03549 kup; KUP system potassium uptake protein D E3E12_01010 cell division protein FtsW K03588 ftsW; cell division protein FtsW D E3E12_02975 energy transducer TonB K03832 tonB; periplasmic protein TonB D E3E12_04290 energy transducer TonB K03832 tonB; periplasmic protein TonB D E3E12_05805 pal; peptidoglycan-associated lipoprotein Pal K03640 pal; peptidoglycan-associated lipoprotein D E3E12_05800 tolB; Tol-Pal system protein TolB K03641 tolB; TolB protein D E3E12_01240 nitrate reductase subunit alpha K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-] D E3E12_01245 narH; nitrate reductase subunit beta K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-] D E3E12_01255 narI; respiratory nitrate reductase subunit gamma K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-] D E3E12_02660 fdnG; formate dehydrogenase-N subunit alpha K08348 fdnG; formate dehydrogenase-N, alpha subunit [EC:1.17.5.3] D E3E12_02025 HlyD family secretion protein K03543 emrA; membrane fusion protein, multidrug efflux system D E3E12_07300 HlyD family secretion protein K03543 emrA; membrane fusion protein, multidrug efflux system D E3E12_04320 efflux RND transporter periplasmic adaptor subunit K15727 czcB; membrane fusion protein, heavy metal efflux system D E3E12_03770 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D E3E12_01765 efflux RND transporter periplasmic adaptor subunit K07799 mdtA; membrane fusion protein, multidrug efflux system D E3E12_03750 nicotinamide mononucleotide transporter K03811 pnuC; nicotinamide mononucleotide transporter D E3E12_05625 hypothetical protein K02198 ccmF; cytochrome c-type biogenesis protein CcmF C 02044 Secretion system [BR:swf02044] D E3E12_04440 YggT family protein K02221 yggT; YggT family protein D E3E12_05425 ComEC/Rec2 family competence protein K02238 comEC; competence protein ComEC D E3E12_06210 HNH endonuclease K12212 icmJ; intracellular multiplication protein IcmJ D E3E12_05755 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D E3E12_06705 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D E3E12_08475 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D E3E12_03630 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D E3E12_08470 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D E3E12_07130 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D E3E12_01815 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D E3E12_01170 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D E3E12_04815 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D E3E12_06390 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D E3E12_06510 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D E3E12_03540 tatA; twin-arginine translocase TatA/TatE family subunit K03116 tatA; sec-independent protein translocase protein TatA D E3E12_06235 tatB; twin-arginine translocase subunit TatB K03117 tatB; sec-independent protein translocase protein TatB D E3E12_06240 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC C 02042 Bacterial toxins [BR:swf02042] D E3E12_05310 HlyC/CorC family transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family D E3E12_01070 HlyC/CorC family transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family C 02022 Two-component system [BR:swf02022] D E3E12_04985 HAMP domain-containing protein K14980 chvG; two-component system, OmpR family, sensor histidine kinase ChvG [EC:2.7.13.3] D E3E12_04980 response regulator transcription factor K14981 chvI; two-component system, OmpR family, response regulator ChvI D E3E12_01995 response regulator transcription factor K02483 K02483; two-component system, OmpR family, response regulator D E3E12_02720 response regulator transcription factor K02483 K02483; two-component system, OmpR family, response regulator D E3E12_05025 HAMP domain-containing protein K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] D E3E12_05030 sigma-54-dependent Fis family transcriptional regulator K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX D E3E12_05830 response regulator transcription factor K13584 ctrA; two-component system, cell cycle response regulator CtrA C 02035 Bacterial motility proteins [BR:swf02035] D E3E12_05835 hypothetical protein K02413 fliJ; flagellar protein FliJ C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:swf04812] D E3E12_06160 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D E3E12_01045 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D E3E12_01040 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA D E3E12_02250 minC; septum formation inhibitor MinC K03610 minC; septum site-determining protein MinC D E3E12_02260 minD; septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D E3E12_02265 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor D E3E12_04045 ParA family protein K03496 parA; chromosome partitioning protein D E3E12_04050 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:swf04147] D E3E12_04215 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG D E3E12_07115 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D E3E12_05330 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D E3E12_05335 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D E3E12_06890 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D E3E12_07090 membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D E3E12_06750 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D E3E12_02820 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D E3E12_05860 hypothetical protein K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D E3E12_07070 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D E3E12_01925 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D E3E12_02220 HIT domain-containing protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D E3E12_04245 bile acid:sodium symporter K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7 D E3E12_03985 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D E3E12_01810 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D E3E12_02750 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D E3E12_00455 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D E3E12_01410 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D E3E12_04435 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D E3E12_07250 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D E3E12_06975 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D E3E12_07500 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D E3E12_07180 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D E3E12_02860 electron transfer flavoprotein subunit alpha/FixB family protein K03522 fixB; electron transfer flavoprotein alpha subunit D E3E12_00960 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D E3E12_07135 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] C 02048 Prokaryotic defense system [BR:swf02048] D E3E12_03305 cas1e; type I-E CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 D E3E12_02335 cas1f; type I-F CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 D E3E12_03310 cas2e; type I-E CRISPR-associated endoribonuclease Cas2 K09951 cas2; CRISPR-associated protein Cas2 D E3E12_03275 cas3; CRISPR-associated helicase Cas3' K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4] D E3E12_02330 cas3f; type I-F CRISPR-associated helicase Cas3 K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4] D E3E12_03280 hypothetical protein K19123 casA; CRISPR system Cascade subunit CasA D E3E12_03285 hypothetical protein K19046 casB; CRISPR system Cascade subunit CasB D E3E12_03290 cas7e; type I-E CRISPR-associated protein Cas7/Cse4/CasC K19124 casC; CRISPR system Cascade subunit CasC D E3E12_03295 cas5e; type I-E CRISPR-associated protein Cas5/CasD K19125 casD; CRISPR system Cascade subunit CasD D E3E12_03300 type I-E CRISPR-associated protein Cas6/Cse3/CasE K19126 casE; CRISPR system Cascade subunit CasE D E3E12_02325 csy1; type I-F CRISPR-associated protein Csy1 K19127 csy1; CRISPR-associated protein Csy1 D E3E12_02320 hypothetical protein K19128 csy2; CRISPR-associated protein Csy2 D E3E12_02315 csy3; type I-F CRISPR-associated protein Csy3 K19129 csy3; CRISPR-associated protein Csy3 D E3E12_02310 cas6f; type I-F CRISPR-associated endoribonuclease Cas6/Csy4 K19130 csy4; CRISPR-associated endonuclease Csy4 [EC:3.1.-.-] D E3E12_01190 type I restriction endonuclease subunit R K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] D E3E12_01185 restriction endonuclease subunit S K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] D E3E12_01180 SAM-dependent DNA methyltransferase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] D E3E12_01740 site-specific DNA-methyltransferase K13581 ccrM; modification methylase [EC:2.1.1.72] D E3E12_08370 site-specific DNA-methyltransferase K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72] D E3E12_01430 AAA domain-containing protein K07452 mcrB; 5-methylcytosine-specific restriction enzyme B [EC:3.1.21.-] D E3E12_01425 hypothetical protein K19147 mcrC; 5-methylcytosine-specific restriction enzyme subunit McrC D E3E12_03670 restriction endonuclease K07448 mrr; restriction system protein D E3E12_07775 type II toxin-antitoxin system death-on-curing family toxin K07341 doc; death on curing protein D E3E12_01045 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D E3E12_06160 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D E3E12_06955 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D E3E12_05370 type IIA DNA topoisomerase subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D E3E12_06295 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D E3E12_05415 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D E3E12_03700 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D E3E12_03705 aminotransferase class V-fold PLP-dependent enzyme K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules C 01504 Antimicrobial resistance genes [BR:swf01504] D E3E12_06765 lysylphosphatidylglycerol synthetase family protein K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3] D E3E12_03770 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D E3E12_03765 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump D E3E12_03760 efflux transporter outer membrane subunit K18139 oprM; outer membrane protein, multidrug efflux system D E3E12_02015 TetR/AcrR family transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:swf00537] D E3E12_07090 membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:swf03100] D E3E12_04445 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D E3E12_08605 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D E3E12_04150 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D E3E12_01080 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D E3E12_05925 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D E3E12_06860 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D E3E12_06865 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D E3E12_01095 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D E3E12_03245 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D E3E12_08220 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D E3E12_03905 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D E3E12_07055 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D E3E12_07060 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D E3E12_02275 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D E3E12_02615 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D E3E12_03620 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D E3E12_05700 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D E3E12_02160 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D E3E12_04745 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D E3E12_05045 tRNA-His K14226 tRNA-His; tRNA His D E3E12_08610 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D E3E12_00730 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D E3E12_05125 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D E3E12_06580 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D E3E12_00625 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D E3E12_03150 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D E3E12_04055 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D E3E12_00535 tRNA-Met K14230 tRNA-Met; tRNA Met D E3E12_04770 tRNA-Ile K14230 tRNA-Met; tRNA Met D E3E12_08590 tRNA-Met K14230 tRNA-Met; tRNA Met D E3E12_04265 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D E3E12_00830 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D E3E12_02865 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D E3E12_01085 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D E3E12_01175 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D E3E12_08330 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D E3E12_08530 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D E3E12_00895 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D E3E12_05320 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D E3E12_03665 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D E3E12_07460 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D E3E12_03625 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D E3E12_05360 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D E3E12_00700 tRNA-Val K14237 tRNA-Val; tRNA Val D E3E12_07635 tRNA-Val K14237 tRNA-Val; tRNA Val D E3E12_07315 tRNA-Val K14237 tRNA-Val; tRNA Val D E3E12_08615 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D E3E12_08600 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D E3E12_06905 NAD-dependent epimerase/dehydratase family protein K00091 E1.1.1.219; dihydroflavonol-4-reductase [EC:1.1.1.219] D E3E12_08435 aldo/keto reductase K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346] D E3E12_02850 electron transfer flavoprotein-ubiquinone oxidoreductase K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1] D E3E12_07310 zinc-binding alcohol dehydrogenase family protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D E3E12_03190 zinc-binding alcohol dehydrogenase family protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D E3E12_03120 NAD(P)H-dependent oxidoreductase K03923 mdaB; NADPH dehydrogenase (quinone) [EC:1.6.5.10] D E3E12_03675 ahpF; alkyl hydroperoxide reductase subunit F K03387 ahpF; NADH-dependent peroxiredoxin subunit F [EC:1.8.1.-] D E3E12_02565 msrA; peptide-methionine (S)-S-oxide reductase MsrA K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D E3E12_01665 msrB; peptide-methionine (R)-S-oxide reductase MsrB K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] D E3E12_03680 redoxin domain-containing protein K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26] D E3E12_06880 Dyp-type peroxidase K07223 yfeX; porphyrinogen peroxidase [EC:1.11.1.-] D E3E12_07035 hmpA; NO-inducible flavohemoprotein K05916 hmp; nitric oxide dioxygenase [EC:1.14.12.17] D E3E12_06925 FAD-dependent oxidoreductase K21677 hpnE; hydroxysqualene dehydroxylase [EC:1.17.8.1] D E3E12_06265 ferredoxin--NADP reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D E3E12_01580 class I SAM-dependent methyltransferase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] D E3E12_04720 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269] D E3E12_00280 1-acyl-sn-glycerol-3-phosphate acyltransferase K22617 olsA; lyso-ornithine lipid O-acyltransferase [EC:2.3.1.270] D E3E12_05650 leucyl/phenylalanyl-tRNA--protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6] D E3E12_04715 GNAT family N-acetyltransferase K22310 olsB; L-ornithine Nalpha-acyltransferase [EC:2.3.2.30] D E3E12_06920 hpnD; presqualene diphosphate synthase HpnD K21678 hpnD; presqualene diphosphate synthase [EC:2.5.1.103] D E3E12_03880 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D E3E12_05780 YbgC/FadM family acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D E3E12_00480 TatD family deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D E3E12_04375 alpha/beta fold hydrolase K01175 ybfF; esterase [EC:3.1.-.-] D E3E12_08025 lysozyme K01185 E3.2.1.17; lysozyme [EC:3.2.1.17] D E3E12_04875 D-alanyl-D-alanine carboxypeptidase K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4] D E3E12_06550 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D E3E12_01710 MoxR family ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D E3E12_00735 NAD(P)H-hydrate dehydratase K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6] D E3E12_06915 hpnC; squalene synthase HpnC K21679 hpnC; hydroxysqualene synthase [EC:4.2.3.156] C 99981 Carbohydrate metabolism C 99982 Energy metabolism D E3E12_03645 fdhD; formate dehydrogenase accessory sulfurtransferase FdhD K02379 fdhD; FdhD protein D E3E12_06780 ferredoxin family protein K05524 fdxA; ferredoxin D E3E12_05615 cytochrome c-type biogenesis protein CcmH K04017 nrfF; formate-dependent nitrite reductase complex subunit NrfF D E3E12_02855 electron transfer flavoprotein subunit beta/FixA family protein K03521 fixA; electron transfer flavoprotein beta subunit C 99983 Lipid metabolism C 99984 Nucleotide metabolism C 99985 Amino acid metabolism D E3E12_05545 YggS family pyridoxal phosphate-dependent enzyme K06997 yggS; PLP dependent protein C 99986 Glycan metabolism D E3E12_08315 hypothetical protein K08992 lapA; lipopolysaccharide assembly protein A D E3E12_02295 flippase-like domain-containing protein K07027 K07027; glycosyltransferase 2 family protein C 99987 Cofactor metabolism D E3E12_07190 type II toxin-antitoxin system RatA family toxin K18588 COQ10; coenzyme Q-binding protein COQ10 C 99988 Secondary metabolism C 99999 Others B B 09192 Unclassified: genetic information processing C 99973 Transcription D E3E12_07005 cold-shock protein K03704 cspA; cold shock protein D E3E12_02450 cold-shock protein K03704 cspA; cold shock protein D E3E12_02535 cold-shock protein K03704 cspA; cold shock protein C 99974 Translation C 99975 Protein processing D E3E12_04870 clpS; ATP-dependent Clp protease adapter ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS D E3E12_00725 trigger factor K03545 tig; trigger factor D E3E12_02675 fdhE; formate dehydrogenase accessory protein FdhE K02380 fdhE; FdhE protein D E3E12_07000 smpB; SsrA-binding protein SmpB K03664 smpB; SsrA-binding protein D E3E12_06970 YifB family Mg chelatase-like AAA ATPase K07391 comM; magnesium chelatase family protein C 99976 Replication and repair D E3E12_07245 YraN family protein K07460 yraN; putative endonuclease D E3E12_05395 dprA; DNA-protecting protein DprA K04096 smf; DNA processing protein D E3E12_07785 PBSX family phage terminase large subunit K06909 xtmB; phage terminase large subunit D E3E12_05665 replication-associated recombination protein A K07478 ycaJ; putative ATPase D E3E12_06135 transposase K07497 K07497; putative transposase C 99979 Viral proteins C 99998 Others D E3E12_04900 YbaB/EbfC family nucleoid-associated protein K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D E3E12_00530 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D E3E12_07255 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D E3E12_07525 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D E3E12_04020 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D E3E12_00055 MFS transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family D E3E12_05175 peptide MFS transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family D E3E12_06625 aspartate-alanine antiporter K07085 K07085; putative transport protein C 99978 Cell growth D E3E12_01680 peptidoglycan DD-metalloendopeptidase family protein K22719 envC; murein hydrolase activator C 99993 Cell motility C 99995 Signaling proteins D E3E12_05200 typA; translational GTPase TypA K06207 typA; GTP-binding protein D E3E12_00290 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins D E3E12_06200 Rieske 2Fe-2S domain-containing protein K22747 AIFM3; apoptosis-inducing factor 3 C 99992 Structural proteins D E3E12_07365 VacJ family lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA D E3E12_04190 hypothetical protein K06077 slyB; outer membrane lipoprotein SlyB D E3E12_03435 capsular biosynthesis protein K07265 kpsS; capsular polysaccharide export protein D E3E12_03430 hypothetical protein K07266 kpsC; capsular polysaccharide export protein D E3E12_04325 OmpW family protein K07275 ompW; outer membrane protein D E3E12_05675 AsmA family protein K07290 yhjG; AsmA family protein D E3E12_05630 cytochrome c maturation protein CcmE K02197 ccmE; cytochrome c-type biogenesis protein CcmE D E3E12_00575 DUF4115 domain-containing protein K15539 rodZ; cytoskeleton protein RodZ C 99994 Others D E3E12_03780 phoU; phosphate signaling complex protein PhoU K02039 phoU; phosphate transport system protein D E3E12_04490 hypothetical protein K02192 bfd; bacterioferritin-associated ferredoxin D E3E12_05695 ApaG domain K06195 apaG; ApaG protein D E3E12_04205 copper resistance protein B K07233 pcoB; copper resistance protein B B B 09194 Poorly characterized C 99996 General function prediction only D E3E12_05595 CvpA family protein K03558 cvpA; membrane protein required for colicin V production D E3E12_03655 MCE family protein K06192 pqiB; paraquat-inducible protein B D E3E12_00775 sufB; Fe-S cluster assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB D E3E12_00765 sufD; Fe-S cluster assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD D E3E12_05440 YihY/virulence factor BrkB family protein K07058 K07058; membrane protein D E3E12_01465 SufE family protein K02426 sufE; cysteine desulfuration protein SufE D E3E12_03660 paraquat-inducible membrane protein A K03808 pqiA; paraquat-inducible protein A D E3E12_02590 alkylphosphonate utilization protein K06193 phnA; protein PhnA C 99997 Function unknown D E3E12_03225 ankyrin repeat domain-containing protein K06867 K06867; uncharacterized protein D E3E12_02945 alpha/beta hydrolase K06889 K06889; uncharacterized protein D E3E12_06775 Bax inhibitor-1/YccA family protein K06890 K06890; uncharacterized protein D E3E12_07690 phage baseplate protein K06903 W; Bacteriophage baseplate protein W D E3E12_07590 hypothetical protein K06905 D; Bacteriophage probable baseplate hub protein D E3E12_07580 phage tail protein K06906 gpU; phage tail protein D E3E12_07560 phage tail protein K06907 FI; Bacteriophage tail sheath protein D E3E12_07565 phage major tail tube protein K06908 FII; Bacteriophage tail tube protein D E3E12_02795 GNAT family N-acetyltransferase K06977 K06977; uncharacterized protein D E3E12_04470 MMPL family transporter K07003 K07003; uncharacterized protein D E3E12_03720 alpha/beta hydrolase K07018 K07018; uncharacterized protein D E3E12_07030 hypothetical protein K07074 K07074; uncharacterized protein D E3E12_04645 AbrB family transcriptional regulator K07120 K07120; uncharacterized protein D E3E12_00930 SEL1-like repeat protein K07126 K07126; uncharacterized protein D E3E12_02920 sel1 repeat family protein K07126 K07126; uncharacterized protein D E3E12_07425 sel1 repeat family protein K07126 K07126; uncharacterized protein D E3E12_07695 hypothetical protein K07126 K07126; uncharacterized protein D E3E12_05575 FAD-dependent oxidoreductase K07137 K07137; uncharacterized protein D E3E12_06505 yidD; membrane protein insertion efficiency factor YidD K08998 K08998; uncharacterized protein D E3E12_03825 DUF192 domain-containing protein K09005 K09005; uncharacterized protein D E3E12_01635 GatB/YqeY domain-containing protein K09117 K09117; uncharacterized protein D E3E12_05135 YcgN family cysteine cluster protein K09160 K09160; uncharacterized protein D E3E12_00110 DUF333 domain-containing protein K09712 K09712; uncharacterized protein D E3E12_04735 hypothetical protein K09791 K09791; uncharacterized protein D E3E12_02690 DUF475 domain-containing protein K09799 K09799; uncharacterized protein D E3E12_02730 SIMPL domain-containing protein K09807 K09807; uncharacterized protein D E3E12_03650 hypothetical protein K09857 K09857; uncharacterized protein D E3E12_04270 yacG; DNA gyrase inhibitor YacG K09862 K09862; uncharacterized protein D E3E12_06195 DUF2076 family protein K09945 K09945; uncharacterized protein D E3E12_07885 DUF2213 domain-containing protein K09960 K09960; uncharacterized protein D E3E12_04650 hypothetical protein K09985 K09985; uncharacterized protein D E3E12_08350 DUF1013 domain-containing protein K09987 K09987; uncharacterized protein D E3E12_07270 hypothetical protein K07276 K07276; uncharacterized protein D E3E12_05495 DUF448 domain-containing protein K07742 ylxR; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 16, 2024