+D Protein KO
#
Membrane Trafficking - Tremella mesenterica
%
!
AExocytosis
B Calcium ion-dependent exocytosis
C Synaptotagmins
C Septins
D TREMEDRAFT_35603 hypothetical protein K16944 SEPT7; septin 7
C DOC-2 proteins
C Acrosomal exocytosis proteins
D TREMEDRAFT_72894 hypothetical protein K06276 PDPK1; 3-phosphoinositide dependent protein kinase-1 [EC:2.7.11.1]
C Phospholipases
D TREMEDRAFT_38681 hypothetical protein K05857 PLCD; phosphatidylinositol phospholipase C, delta [EC:3.1.4.11]
D TREMEDRAFT_71238 hypothetical protein K01115 PLD1_2; phospholipase D1/2 [EC:3.1.4.4]
D TREMEDRAFT_34686 hypothetical protein K01115 PLD1_2; phospholipase D1/2 [EC:3.1.4.4]
C Kinases and associated proteins
D TREMEDRAFT_14351 hypothetical protein K00889 PIP5K; 1-phosphatidylinositol-4-phosphate 5-kinase [EC:2.7.1.68]
D TREMEDRAFT_70965 hypothetical protein K08838 STK24_25_MST4; serine/threonine-protein kinase 24/25/MST4 [EC:2.7.11.1]
D TREMEDRAFT_27892 hypothetical protein K08838 STK24_25_MST4; serine/threonine-protein kinase 24/25/MST4 [EC:2.7.11.1]
D TREMEDRAFT_37746 hypothetical protein K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D TREMEDRAFT_72042 hypothetical protein K19852 KIN1_2; serine/threonine protein kinase KIN1/2 [EC:2.7.11.1]
D TREMEDRAFT_59801 hypothetical protein K19852 KIN1_2; serine/threonine protein kinase KIN1/2 [EC:2.7.11.1]
C Others
D TREMEDRAFT_32424 hypothetical protein K19932 NCS1; neuronal calcium sensor
B Small GTPases and associated proteins
C Rab GTPases
D TREMEDRAFT_58860 hypothetical protein K07901 RAB8A; Ras-related protein Rab-8A
C Rab associated proteins
D TREMEDRAFT_68331 hypothetical protein K02183 CALM; calmodulin
D TREMEDRAFT_45697 hypothetical protein K02183 CALM; calmodulin
D TREMEDRAFT_67650 hypothetical protein K19940 SEC2; Rab guanine nucleotide exchange factor SEC2
D TREMEDRAFT_73312 hypothetical protein K15292 STXBP1; syntaxin-binding protein 1
D TREMEDRAFT_27343 hypothetical protein K08518 STXBP5; syntaxin-binding protein 5
D TREMEDRAFT_70880 hypothetical protein K19952 RABIF; guanine nucleotide exchange factor
D TREMEDRAFT_71100 hypothetical protein K19951 TBC1D8_9; TBC1 domain family member 8/9
D TREMEDRAFT_72687 hypothetical protein K13342 PEX5; peroxin-5
D TREMEDRAFT_74315 hypothetical protein K13342 PEX5; peroxin-5
D TREMEDRAFT_70116 hypothetical protein K23460 CHM; Rab proteins geranylgeranyltransferase component A
D TREMEDRAFT_64100 hypothetical protein K14050 RABGGTA; geranylgeranyl transferase type-2 subunit alpha [EC:2.5.1.60]
D TREMEDRAFT_67428 hypothetical protein K05956 RABGGTB; geranylgeranyl transferase type-2 subunit beta [EC:2.5.1.60]
D TREMEDRAFT_24795 hypothetical protein K24155 DMXL; rabconnectin-3a
C Rho GTPases
D TREMEDRAFT_39272 hypothetical protein K04393 CDC42; cell division control protein 42
D TREMEDRAFT_36812 hypothetical protein K04392 RAC1; Ras-related C3 botulinum toxin substrate 1
D TREMEDRAFT_35867 hypothetical protein K04392 RAC1; Ras-related C3 botulinum toxin substrate 1
C Other small GTPases and associated proteins
B Tethering complex
C Exocyst complex
D TREMEDRAFT_29687 hypothetical protein K17637 EXOC2; exocyst complex component 2
D TREMEDRAFT_69418 hypothetical protein K06110 EXOC3; exocyst complex component 3
D TREMEDRAFT_46166 hypothetical protein K19984 EXOC5; exocyst complex component 5
D TREMEDRAFT_71371 hypothetical protein K19985 EXOC6; exocyst complex component 6
D TREMEDRAFT_63258 hypothetical protein K07195 EXOC7; exocyst complex component 7
D TREMEDRAFT_41093 hypothetical protein K19986 EXOC8; exocyst complex component 8
C Exocyst complex assembly proteins
D TREMEDRAFT_45479 hypothetical protein K17945 TPM1_2; tropomyosin, fungi type
B Others
C Exomer complex
D TREMEDRAFT_73967 hypothetical protein K19877 CHS5; chitin biosynthesis protein CHS5
D TREMEDRAFT_71943 hypothetical protein K19881 BUD7; Chs5-Arf1p-binding protein BUD7/BCH1
C Others
D TREMEDRAFT_26996 hypothetical protein K12481 RBSN; rabenosyn-5
D TREMEDRAFT_74264 hypothetical protein K19995 SCAMP; secretory carrier-associated membrane protein
#
ASNARE
B Syntaxin (Qa)
C Stx-PM
D TREMEDRAFT_74009 hypothetical protein K08486 STX1B_2_3; syntaxin 1B/2/3
C Stx-Endo
C Stx-TGN / EE
D TREMEDRAFT_60250 hypothetical protein K08489 STX16; syntaxin 16
C Stx-cisGolgi
D TREMEDRAFT_27331 hypothetical protein K08490 STX5; syntaxin 5
C Stx-sER
C Stx-rER
D TREMEDRAFT_69965 hypothetical protein K08492 STX18; syntaxin 18
B SNAP-25[N] (Qb)
C Vti1
D TREMEDRAFT_67822 hypothetical protein K08493 VTI1; vesicle transport through interaction with t-SNAREs 1
C NPSN
C Gos1 (Gos28)
D TREMEDRAFT_28241 hypothetical protein K08495 GOSR1; golgi SNAP receptor complex member 1
C Bos1 / Membrin
D TREMEDRAFT_28693 hypothetical protein K08496 GOSR2; golgi SNAP receptor complex member 2
C Sec20
D TREMEDRAFT_64527 hypothetical protein K08497 SEC20; protein transport protein SEC20
B SNAP-25[C] (Qc)
C STX6
C STX8
D TREMEDRAFT_66698 hypothetical protein K08501 STX8; syntaxin 8
D TREMEDRAFT_37265 hypothetical protein K08502 VAM7; regulator of vacuolar morphogenesis
C STX10
C Bet1
D TREMEDRAFT_70113 hypothetical protein K08504 BET1; blocked early in transport 1
C Sft1
C Syp7
C Use1
B SNAP-25 (Qb,c)
C SNAP-23
C SNAP-25
D TREMEDRAFT_26823 hypothetical protein K19950 SEC9; protein transport protein SEC9
C SNAP-29
C SNAP-47
B VAMP, Ykt6, Sec22 (R)
C VAMP
D TREMEDRAFT_42350 hypothetical protein K08513 VAMP4; vesicle-associated membrane protein 4
D TREMEDRAFT_27503 hypothetical protein K08513 VAMP4; vesicle-associated membrane protein 4
D TREMEDRAFT_61181 hypothetical protein K08515 VAMP7; vesicle-associated membrane protein 7
C Ykt6
D TREMEDRAFT_40140 hypothetical protein K08516 YKT6; synaptobrevin homolog YKT6
C Sec22
D TREMEDRAFT_70022 hypothetical protein K08517 SEC22; vesicle transport protein SEC22
C Tomosyn
D TREMEDRAFT_27343 hypothetical protein K08518 STXBP5; syntaxin-binding protein 5
C Putative SNAREs
B SNARE associated proteins
C Syntaxin-binding proteins
D TREMEDRAFT_73312 hypothetical protein K15292 STXBP1; syntaxin-binding protein 1
D TREMEDRAFT_65892 hypothetical protein K19998 SCFD1; sec1 family domain-containing protein 1
C Palmitoyltransferases
D TREMEDRAFT_63293 hypothetical protein K20028 ZDHHC2_15_20; palmitoyltransferase ZDHHC2/15/20 [EC:2.3.1.225]
C Others
D TREMEDRAFT_42251 hypothetical protein K06027 NSF; vesicle-fusing ATPase [EC:3.6.4.6]
D TREMEDRAFT_66620 hypothetical protein K15296 NAPA; alpha-soluble NSF attachment protein
D TREMEDRAFT_34892 hypothetical protein K17919 SNX4; sorting nexin-4
D TREMEDRAFT_25756 hypothetical protein K21996 SNX41_42; sorting nexin-41/42
D TREMEDRAFT_16901 hypothetical protein K15620 GOLPH3; golgi phosphoprotein 3
D TREMEDRAFT_42539 hypothetical protein K13525 VCP; transitional endoplasmic reticulum ATPase
D TREMEDRAFT_74619 hypothetical protein K14012 NSFL1C; UBX domain-containing protein 1
D TREMEDRAFT_36653 hypothetical protein K27407 VTS1; RNA-binding protein VTS1
#
AEndocytosis
B Clathrin-mediated endocytosis
C Clathrin
D TREMEDRAFT_73158 hypothetical protein K04646 CLTC; clathrin heavy chain
C Dynamin
D TREMEDRAFT_31325 hypothetical protein K17065 DNM1L; dynamin 1-like protein [EC:3.6.5.5]
C AP-2 complex
D TREMEDRAFT_69323 hypothetical protein K11824 AP2A; AP-2 complex subunit alpha
D TREMEDRAFT_38658 hypothetical protein K11825 AP2B1; AP-2 complex subunit beta-1
D TREMEDRAFT_30756 hypothetical protein K11826 AP2M1; AP-2 complex subunit mu-1
D TREMEDRAFT_70476 hypothetical protein K11827 AP2S1; AP-2 complex subunit sigma-1
C Other core components
D TREMEDRAFT_69537 hypothetical protein K20042 FCHO; F-BAR domain only protein
D TREMEDRAFT_69235 hypothetical protein K12471 EPN; epsin
D TREMEDRAFT_70257 hypothetical protein K12471 EPN; epsin
D TREMEDRAFT_40084 hypothetical protein K12472 EPS15; epidermal growth factor receptor substrate 15
D TREMEDRAFT_41409 hypothetical protein K20044 PICALM; phosphatidylinositol-binding clathrin assembly protein
D TREMEDRAFT_43122 hypothetical protein K12562 AMPH; amphiphysin
D TREMEDRAFT_66217 hypothetical protein K20046 SLA1; actin cytoskeleton-regulatory complex protein SLA1
D TREMEDRAFT_74832 hypothetical protein K20047 PAN1; actin cytoskeleton-regulatory complex protein PAN1
D TREMEDRAFT_36956 hypothetical protein K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8
D TREMEDRAFT_43142 hypothetical protein K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8
C Low-density lipoprotein receptor (LDLR) family proteins
C LDLR adaptor proteins
D TREMEDRAFT_14351 hypothetical protein K00889 PIP5K; 1-phosphatidylinositol-4-phosphate 5-kinase [EC:2.7.1.68]
C GPCR adaptor proteins
D TREMEDRAFT_42980 hypothetical protein K20061 ALY1_2; arrestin-related trafficking adapter 3/6
D TREMEDRAFT_41437 hypothetical protein K20062 ART4_5_7; arrestin-related trafficking adapter 4/5/7
C Receptor tyrosine kinase (RTK) adaptor proteins
C Inositol 5-phosphatases
D TREMEDRAFT_39318 hypothetical protein K20279 SYNJ; synaptojanin [EC:3.1.3.36]
C Kinases
D TREMEDRAFT_73843 hypothetical protein K08853 AAK; AP2-associated kinase [EC:2.7.11.1]
D TREMEDRAFT_70798 hypothetical protein K17541 SCYL2; SCY1-like protein 2
C Ubiquitin E3 ligases
D TREMEDRAFT_40836 hypothetical protein K10591 NEDD4; E3 ubiquitin-protein ligase NEDD4 [EC:2.3.2.26]
C Others
D TREMEDRAFT_32224 hypothetical protein K20040 HIP1R; huntingtin-interacting protein 1-related protein
D TREMEDRAFT_70669 hypothetical protein K08054 CANX; calnexin
D TREMEDRAFT_25672 hypothetical protein K20069 NECAP1_2; adaptin ear-binding coat-associated protein 1/2
D TREMEDRAFT_29571 hypothetical protein K20031 ZDHHC6; palmitoyltransferase ZDHHC6 [EC:2.3.1.225]
B Lipid raft mediated endocytosis
C Caveolin-mediated endocytosis
D TREMEDRAFT_31325 hypothetical protein K17065 DNM1L; dynamin 1-like protein [EC:3.6.5.5]
D TREMEDRAFT_58957 hypothetical protein K02677 PRKCA; classical protein kinase C alpha type [EC:2.7.11.13]
C Flotillin-dependent endocytosis
C GRAF1-dependent endocytosis
D TREMEDRAFT_39272 hypothetical protein K04393 CDC42; cell division control protein 42
D TREMEDRAFT_74202 hypothetical protein K07937 ARF1_2; ADP-ribosylation factor 1/2
C Arf6-dependent endocytosis
D TREMEDRAFT_70641 hypothetical protein K07941 ARF6; ADP-ribosylation factor 6
D TREMEDRAFT_36812 hypothetical protein K04392 RAC1; Ras-related C3 botulinum toxin substrate 1
D TREMEDRAFT_35867 hypothetical protein K04392 RAC1; Ras-related C3 botulinum toxin substrate 1
C RhoA-dependent endocytosis
D TREMEDRAFT_44655 hypothetical protein K04513 RHOA; Ras homolog gene family, member A
D TREMEDRAFT_31325 hypothetical protein K17065 DNM1L; dynamin 1-like protein [EC:3.6.5.5]
B Phagocytosis
C Fc receptors
C Integrins (complement receptors)
C Opsonins
C Toll-like receptors
C C-lectin receptors
C Scavenger receptors
C Coronins
C Others
D TREMEDRAFT_70354 hypothetical protein K10356 MYO1; myosin I
B Macropinocytosis
C Ras GTPases
D TREMEDRAFT_18983 hypothetical protein K07827 KRAS; GTPase KRas
D TREMEDRAFT_28995 hypothetical protein K07827 KRAS; GTPase KRas
D TREMEDRAFT_36812 hypothetical protein K04392 RAC1; Ras-related C3 botulinum toxin substrate 1
D TREMEDRAFT_35867 hypothetical protein K04392 RAC1; Ras-related C3 botulinum toxin substrate 1
D TREMEDRAFT_39272 hypothetical protein K04393 CDC42; cell division control protein 42
C Kinases
D TREMEDRAFT_74295 hypothetical protein K00914 PIK3C3; phosphatidylinositol 3-kinase [EC:2.7.1.137]
D TREMEDRAFT_34462 hypothetical protein K00921 PIKFYVE; 1-phosphatidylinositol-3-phosphate 5-kinase [EC:2.7.1.150]
D TREMEDRAFT_58763 hypothetical protein K00921 PIKFYVE; 1-phosphatidylinositol-3-phosphate 5-kinase [EC:2.7.1.150]
C Phospholipase C
D TREMEDRAFT_38681 hypothetical protein K05857 PLCD; phosphatidylinositol phospholipase C, delta [EC:3.1.4.11]
C Sorting nexins
D TREMEDRAFT_33280 hypothetical protein K17917 SNX1_2; sorting nexin-1/2
C Others
B Bin/Amphiphysin/Rvs (BAR) family proteins
C N-BAR proteins
D TREMEDRAFT_43122 hypothetical protein K12562 AMPH; amphiphysin
D TREMEDRAFT_71548 hypothetical protein K20120 BIN3; bridging integrator 3
C F-BAR proteins
D TREMEDRAFT_69537 hypothetical protein K20042 FCHO; F-BAR domain only protein
D TREMEDRAFT_70442 hypothetical protein K20643 RGD1; Rho GTPase-activating protein RGD1
C I-BAR proteins
B Rab GTPases and associated proteins
C Rab GTPases
D TREMEDRAFT_27089 hypothetical protein K07889 RAB5C; Ras-related protein Rab-5C
D TREMEDRAFT_66953 hypothetical protein K07889 RAB5C; Ras-related protein Rab-5C
C Rab associated proteins
D TREMEDRAFT_32532 hypothetical protein K20131 RABGEF1; Rab5 GDP/GTP exchange factor
D TREMEDRAFT_26996 hypothetical protein K12481 RBSN; rabenosyn-5
D TREMEDRAFT_74295 hypothetical protein K00914 PIK3C3; phosphatidylinositol 3-kinase [EC:2.7.1.137]
D TREMEDRAFT_44965 hypothetical protein K08333 PIK3R4; phosphoinositide-3-kinase, regulatory subunit 4 [EC:2.7.11.1]
D TREMEDRAFT_71653 hypothetical protein K12479 VPS45; vacuolar protein sorting-associated protein 45
B Arf GTPases and associated proteins
C Arf GTPases
D TREMEDRAFT_74202 hypothetical protein K07937 ARF1_2; ADP-ribosylation factor 1/2
D TREMEDRAFT_70641 hypothetical protein K07941 ARF6; ADP-ribosylation factor 6
C Arf associated proteins
D TREMEDRAFT_33845 hypothetical protein K12486 SMAP; stromal membrane-associated protein
D TREMEDRAFT_74099 hypothetical protein K12494 PSD; PH and SEC7 domain-containing protein
B Others
C Fucosyltransferase
C EFR3-PI4KIII alpha complex and associated proteins
D TREMEDRAFT_58152 hypothetical protein K00888 PI4KA; phosphatidylinositol 4-kinase A [EC:2.7.1.67]
D TREMEDRAFT_72219 hypothetical protein K21842 EFR3; protein EFR3
C Insulin-like growth factor-binding proteins
C Others
#
AEndosome - Lysosome transport
B Rab GTPases and associated proteins
C Rab GTPases
D TREMEDRAFT_27089 hypothetical protein K07889 RAB5C; Ras-related protein Rab-5C
D TREMEDRAFT_66953 hypothetical protein K07889 RAB5C; Ras-related protein Rab-5C
D TREMEDRAFT_42329 hypothetical protein K07897 RAB7A; Ras-related protein Rab-7A
C Retromer subcomplex
D TREMEDRAFT_41747 hypothetical protein K18468 VPS35; vacuolar protein sorting-associated protein 35
D TREMEDRAFT_43299 hypothetical protein K18467 VPS29; vacuolar protein sorting-associated protein 29
D TREMEDRAFT_31826 hypothetical protein K18466 VPS26A_B; vacuolar protein sorting-associated protein 26A/B
C FTS/Hook/FHIP (FHF) complex
D TREMEDRAFT_64529 hypothetical protein K16536 HOOK3; protein HOOK3
C Rab associated proteins
D TREMEDRAFT_63337 hypothetical protein K11982 RNF115_126; E3 ubiquitin-protein ligase RNF115/126 [EC:2.3.2.27]
D TREMEDRAFT_74295 hypothetical protein K00914 PIK3C3; phosphatidylinositol 3-kinase [EC:2.7.1.137]
D TREMEDRAFT_26035 hypothetical protein K02731 PSMA7; 20S proteasome subunit alpha 4 [EC:3.4.25.1]
D TREMEDRAFT_59421 hypothetical protein K18469 TBC1D5; TBC1 domain family member 5
D TREMEDRAFT_70187 hypothetical protein K20168 TBC1D15; TBC1 domain family member 15
D TREMEDRAFT_70116 hypothetical protein K23460 CHM; Rab proteins geranylgeranyltransferase component A
D TREMEDRAFT_64100 hypothetical protein K14050 RABGGTA; geranylgeranyl transferase type-2 subunit alpha [EC:2.5.1.60]
D TREMEDRAFT_67428 hypothetical protein K05956 RABGGTB; geranylgeranyl transferase type-2 subunit beta [EC:2.5.1.60]
D TREMEDRAFT_11606 hypothetical protein K20176 SGSM3; small G protein signaling modulator 3
D TREMEDRAFT_16901 hypothetical protein K15620 GOLPH3; golgi phosphoprotein 3
B Arf GTPases and associated proteins
C Arf GTPases
D TREMEDRAFT_64639 hypothetical protein K07955 ARL8; ADP-ribosylation factor-like protein 8
C BLOC-one-related complex (BORC)
C N-acetyl transferase complex C (NatC)
D TREMEDRAFT_67141 hypothetical protein K00670 NAA30; N-alpha-acetyltransferase 30 [EC:2.3.1.256]
D TREMEDRAFT_73336 hypothetical protein K20823 NAA35; N-alpha-acetyltransferase 35, NatC auxiliary subunit
D TREMEDRAFT_59464 hypothetical protein K20824 NAA38; N-alpha-acetyltransferase 38, NatC auxiliary subunit
C Other Arf associated proteins
B Endosomal sorting complexes required for transport (ESCRT)
C ESCRT-0 complex
D TREMEDRAFT_33875 hypothetical protein K12182 HGS; hepatocyte growth factor-regulated tyrosine kinase substrate
D TREMEDRAFT_36025 hypothetical protein K04705 STAM; signal transducing adaptor molecule
C ESCRT-I complex
D TREMEDRAFT_24652 hypothetical protein K12183 TSG101; ESCRT-I complex subunit TSG101
D TREMEDRAFT_68381 hypothetical protein K12184 VPS28; ESCRT-I complex subunit VPS28
C ESCRT-II complex
D TREMEDRAFT_34426 hypothetical protein K12188 SNF8; ESCRT-II complex subunit VPS22
D TREMEDRAFT_59980 hypothetical protein K12189 VPS25; ESCRT-II complex subunit VPS25
D TREMEDRAFT_28670 hypothetical protein K12190 VPS36; ESCRT-II complex subunit VPS36
C ESCRT-III complex
D TREMEDRAFT_72934 hypothetical protein K12197 CHMP1; charged multivesicular body protein 1
D TREMEDRAFT_62939 hypothetical protein K12191 CHMP2A; charged multivesicular body protein 2A
D TREMEDRAFT_26022 hypothetical protein K12193 VPS24; charged multivesicular body protein 3
D TREMEDRAFT_40846 hypothetical protein K12194 CHMP4A_B; charged multivesicular body protein 4A/B
D TREMEDRAFT_74939 hypothetical protein K12198 CHMP5; charged multivesicular body protein 5
D TREMEDRAFT_26157 hypothetical protein K12195 CHMP6; charged multivesicular body protein 6
D TREMEDRAFT_67523 hypothetical protein K15053 CHMP7; charged multivesicular body protein 7
D TREMEDRAFT_68115 hypothetical protein K12196 VPS4; vacuolar protein-sorting-associated protein 4
C ESCRT associated proteins
D TREMEDRAFT_45932 hypothetical protein K12199 VTA1; vacuolar protein sorting-associated protein VTA1
D TREMEDRAFT_63488 hypothetical protein K12200 PDCD6IP; programmed cell death 6-interacting protein
D TREMEDRAFT_20787 hypothetical protein K12200 PDCD6IP; programmed cell death 6-interacting protein
B Tethering complex
C CORVET complex
D TREMEDRAFT_68217 hypothetical protein K20177 VPS3; vacuolar protein sorting-associated protein 3
D TREMEDRAFT_40588 hypothetical protein K20178 VPS8; vacuolar protein sorting-associated protein 8
D TREMEDRAFT_69617 hypothetical protein K20179 VPS11; vacuolar protein sorting-associated protein 11
D TREMEDRAFT_71557 hypothetical protein K20180 VPS16; vacuolar protein sorting-associated protein 16
D TREMEDRAFT_40794 hypothetical protein K20181 VPS18; vacuolar protein sorting-associated protein 18
D TREMEDRAFT_27638 hypothetical protein K20182 VPS33A; vacuolar protein sorting-associated protein 33A
C Hops complex
D TREMEDRAFT_69617 hypothetical protein K20179 VPS11; vacuolar protein sorting-associated protein 11
D TREMEDRAFT_71557 hypothetical protein K20180 VPS16; vacuolar protein sorting-associated protein 16
D TREMEDRAFT_40794 hypothetical protein K20181 VPS18; vacuolar protein sorting-associated protein 18
D TREMEDRAFT_27638 hypothetical protein K20182 VPS33A; vacuolar protein sorting-associated protein 33A
D TREMEDRAFT_70067 hypothetical protein K20183 VPS39; Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
D TREMEDRAFT_70599 hypothetical protein K20184 VPS41; vacuolar protein sorting-associated protein 41
B Acidification regulators
C Rabconnectin-3 complex
D TREMEDRAFT_24795 hypothetical protein K24155 DMXL; rabconnectin-3a
D TREMEDRAFT_27484 hypothetical protein K24738 WDR7; rabconnectin-3b
C RAVE complex
D TREMEDRAFT_24795 hypothetical protein K24155 DMXL; rabconnectin-3a
D TREMEDRAFT_43738 hypothetical protein K03094 SKP1; S-phase kinase-associated protein 1
B Others
C AP-3 complex
D TREMEDRAFT_43040 hypothetical protein K12396 AP3D; AP-3 complex subunit delta
D TREMEDRAFT_34827 hypothetical protein K12397 AP3B; AP-3 complex subunit beta
D TREMEDRAFT_68649 hypothetical protein K12398 AP3M; AP-3 complex subunit mu
D TREMEDRAFT_70308 hypothetical protein K12399 AP3S; AP-3 complex subunit sigma
C BLOC-1 complex
C BLOC-1 complex (yeast)
C BLOC-2 complex
C BLOC-3 complex
C Ferlins
C Others
D TREMEDRAFT_36218 hypothetical protein K20195 MON1; vacuolar fusion protein MON1
D TREMEDRAFT_30214 hypothetical protein K11839 USP8; ubiquitin carboxyl-terminal hydrolase 8 [EC:3.4.19.12]
D TREMEDRAFT_73959 hypothetical protein K23481 VPS1; vacuolar protein sorting-associated protein 1
#
AProtein recycling
B Rab GTPases and associated proteins
C Rab GTPases
D TREMEDRAFT_27581 hypothetical protein K07880 RAB4B; Ras-related protein Rab-4B
D TREMEDRAFT_42942 hypothetical protein K07904 RAB11A; Ras-related protein Rab-11A
C Rab4 associated proteins
D TREMEDRAFT_26996 hypothetical protein K12481 RBSN; rabenosyn-5
D TREMEDRAFT_34892 hypothetical protein K17919 SNX4; sorting nexin-4
D TREMEDRAFT_59148 hypothetical protein K10416 DYNC1LI; dynein cytoplasmic 1 light intermediate chain
C Rab11 associated proteins
D TREMEDRAFT_41427 hypothetical protein K14004 SEC13; protein transport protein SEC13
D TREMEDRAFT_71371 hypothetical protein K19985 EXOC6; exocyst complex component 6
D TREMEDRAFT_33160 hypothetical protein K20242 EVI5; ecotropic viral integration site 5 protein
D TREMEDRAFT_16901 hypothetical protein K15620 GOLPH3; golgi phosphoprotein 3
C Other Rab GTPase associated proteins
D TREMEDRAFT_32532 hypothetical protein K20131 RABGEF1; Rab5 GDP/GTP exchange factor
D TREMEDRAFT_70770 hypothetical protein K04482 RAD51; DNA repair protein RAD51
B Others
C Glutamate receptor-interacting proteins (GRIPs)
C GRIP associated proteins
C EARP complex
D TREMEDRAFT_65520 hypothetical protein K20296 ANG2; vacuolar protein sorting-associated protein 51
D TREMEDRAFT_69256 hypothetical protein K20298 VPS52; vacuolar protein sorting-associated protein 52
D TREMEDRAFT_68035 hypothetical protein K20299 VPS53; vacuolar protein sorting-associated protein 53
C WASH complex
D TREMEDRAFT_61777 hypothetical protein K10364 CAPZA; F-actin-capping protein subunit alpha
D TREMEDRAFT_62205 hypothetical protein K10365 CAPZB; F-actin-capping protein subunit beta
C Retriever complex
D TREMEDRAFT_43299 hypothetical protein K18467 VPS29; vacuolar protein sorting-associated protein 29
C Others
#
AEndosome - Golgi transport
B Rab GTPases and associated proteins
C Rab GTPases
D TREMEDRAFT_70574 hypothetical protein K07893 RAB6A; Ras-related protein Rab-6A
C Rab associated proteins
D TREMEDRAFT_16901 hypothetical protein K15620 GOLPH3; golgi phosphoprotein 3
D TREMEDRAFT_33924 hypothetical protein K10402 KIF20; kinesin family member 20
D TREMEDRAFT_71100 hypothetical protein K19951 TBC1D8_9; TBC1 domain family member 8/9
D TREMEDRAFT_37220 hypothetical protein K20285 RABEPK; Rab9 effector protein with kelch motifs
D TREMEDRAFT_35439 hypothetical protein K10419 DYNLRB; dynein light chain roadblock-type
D TREMEDRAFT_25741 hypothetical protein K04648 DCTN1; dynactin 1
D TREMEDRAFT_25659 hypothetical protein K19525 VPS13A_C; vacuolar protein sorting-associated protein 13A/C
B Arf GTPases and associated proteins
C Arf GTPases
D TREMEDRAFT_74202 hypothetical protein K07937 ARF1_2; ADP-ribosylation factor 1/2
D TREMEDRAFT_40327 hypothetical protein K07942 ARL1; ADP-ribosylation factor-like protein 1
D TREMEDRAFT_31277 hypothetical protein K07952 ARFRP1; ADP-ribosylation factor related protein 1
C Arf GTPase associated proteins
D TREMEDRAFT_67748 hypothetical protein K12492 ARFGAP1; ADP-ribosylation factor GTPase-activating protein 1
D TREMEDRAFT_26806 hypothetical protein K12493 ARFGAP2_3; ADP-ribosylation factor GTPase-activating protein 2/3
D TREMEDRAFT_33845 hypothetical protein K12486 SMAP; stromal membrane-associated protein
D TREMEDRAFT_25229 hypothetical protein K18442 ARFGEF; brefeldin A-inhibited guanine nucleotide-exchange protein
D TREMEDRAFT_41874 hypothetical protein K18443 GBF1; golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1
B Tethering complex
C Conserved oligomeric Golgi (COG) complex
D TREMEDRAFT_62734 hypothetical protein K20288 COG1; conserved oligomeric Golgi complex subunit 1
D TREMEDRAFT_33755 hypothetical protein K20289 COG2; conserved oligomeric Golgi complex subunit 2
D TREMEDRAFT_72196 hypothetical protein K20290 COG3; conserved oligomeric Golgi complex subunit 3
D TREMEDRAFT_70757 hypothetical protein K20291 COG4; conserved oligomeric Golgi complex subunit 4
D TREMEDRAFT_25851 hypothetical protein K20292 COG5; conserved oligomeric Golgi complex subunit 5
D TREMEDRAFT_34802 hypothetical protein K20293 COG6; conserved oligomeric Golgi complex subunit 6
D TREMEDRAFT_69058 hypothetical protein K20294 COG7; conserved oligomeric Golgi complex subunit 7
D TREMEDRAFT_57122 hypothetical protein K20295 COG8; conserved oligomeric Golgi complex subunit 8
C GARP complex
D TREMEDRAFT_65520 hypothetical protein K20296 ANG2; vacuolar protein sorting-associated protein 51
D TREMEDRAFT_69256 hypothetical protein K20298 VPS52; vacuolar protein sorting-associated protein 52
D TREMEDRAFT_68035 hypothetical protein K20299 VPS53; vacuolar protein sorting-associated protein 53
D TREMEDRAFT_62628 hypothetical protein K17600 VPS54; vacuolar protein sorting-associated protein 54
C TRAPP complex II
D TREMEDRAFT_31209 hypothetical protein K20300 TRAPPC1; trafficking protein particle complex subunit 1
D TREMEDRAFT_27244 hypothetical protein K20301 TRAPPC2; trafficking protein particle complex subunit 2
D TREMEDRAFT_62427 hypothetical protein K20301 TRAPPC2; trafficking protein particle complex subunit 2
D TREMEDRAFT_39893 hypothetical protein K20302 TRAPPC3; trafficking protein particle complex subunit 3
D TREMEDRAFT_31800 hypothetical protein K20303 TRAPPC4; trafficking protein particle complex subunit 4
D TREMEDRAFT_68769 hypothetical protein K20280 TRAPPC5; trafficking protein particle complex subunit 5
D TREMEDRAFT_45290 hypothetical protein K20304 TRAPPC6; trafficking protein particle complex subunit 6
D TREMEDRAFT_34792 hypothetical protein K20305 TRAPPC8; trafficking protein particle complex subunit 8
D TREMEDRAFT_26647 hypothetical protein K20306 TRAPPC9; trafficking protein particle complex subunit 9
D TREMEDRAFT_63910 hypothetical protein K20307 TRAPPC10; trafficking protein particle complex subunit 10
D TREMEDRAFT_44157 hypothetical protein K20308 TRAPPC11; trafficking protein particle complex subunit 11
D TREMEDRAFT_74899 hypothetical protein K20310 TRAPPC13; trafficking protein particle complex subunit 13
B Others
C AP-1 complex
D TREMEDRAFT_43354 hypothetical protein K12391 AP1G1; AP-1 complex subunit gamma-1
D TREMEDRAFT_37167 hypothetical protein K12392 AP1B1; AP-1 complex subunit beta-1
D TREMEDRAFT_63376 hypothetical protein K12393 AP1M; AP-1 complex subunit mu
D TREMEDRAFT_45309 hypothetical protein K12394 AP1S1_2; AP-1 complex subunit sigma 1/2
C AP-3 complex
D TREMEDRAFT_43040 hypothetical protein K12396 AP3D; AP-3 complex subunit delta
D TREMEDRAFT_34827 hypothetical protein K12397 AP3B; AP-3 complex subunit beta
D TREMEDRAFT_68649 hypothetical protein K12398 AP3M; AP-3 complex subunit mu
D TREMEDRAFT_70308 hypothetical protein K12399 AP3S; AP-3 complex subunit sigma
C AP-4 complex
D TREMEDRAFT_74073 hypothetical protein K12400 AP4E1; AP-4 complex subunit epsilon-1
C GGA
D TREMEDRAFT_72591 hypothetical protein K12404 GGA; ADP-ribosylation factor-binding protein GGA
C Aftiphilin/p200/gamma-synergin complex
D TREMEDRAFT_74089 hypothetical protein K24814 HEATR5; HEAT repeat-containing protein 5
C Others
D TREMEDRAFT_71238 hypothetical protein K01115 PLD1_2; phospholipase D1/2 [EC:3.1.4.4]
D TREMEDRAFT_34686 hypothetical protein K01115 PLD1_2; phospholipase D1/2 [EC:3.1.4.4]
D TREMEDRAFT_58152 hypothetical protein K00888 PI4KA; phosphatidylinositol 4-kinase A [EC:2.7.1.67]
D TREMEDRAFT_14351 hypothetical protein K00889 PIP5K; 1-phosphatidylinositol-4-phosphate 5-kinase [EC:2.7.1.68]
D TREMEDRAFT_34462 hypothetical protein K00921 PIKFYVE; 1-phosphatidylinositol-3-phosphate 5-kinase [EC:2.7.1.150]
D TREMEDRAFT_58763 hypothetical protein K00921 PIKFYVE; 1-phosphatidylinositol-3-phosphate 5-kinase [EC:2.7.1.150]
D TREMEDRAFT_60005 hypothetical protein K20316 SCOC; short coiled-coil protein
D TREMEDRAFT_62730 hypothetical protein K20318 SYS1; protein SYS1
D TREMEDRAFT_40176 hypothetical protein K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family
D TREMEDRAFT_37929 hypothetical protein K23544 SERINC1; serine incorporator 1
D TREMEDRAFT_70455 hypothetical protein K17918 SNX3_12; sorting nexin-3/12
D TREMEDRAFT_34173 hypothetical protein K17922 SNX8; sorting nexin-8
D TREMEDRAFT_71474 hypothetical protein K26678 MON2; protein MON2
D TREMEDRAFT_71761 hypothetical protein K26680 DOP1; protein dopey
D TREMEDRAFT_61961 hypothetical protein K26750 TVP15; golgi apparatus membrane protein TVP15
D TREMEDRAFT_25430 hypothetical protein K26752 TVP23; golgi apparatus membrane protein TVP23
D TREMEDRAFT_74454 hypothetical protein K26753 TVP38; golgi apparatus membrane protein TVP38
D TREMEDRAFT_34428 hypothetical protein K26753 TVP38; golgi apparatus membrane protein TVP38
D TREMEDRAFT_73959 hypothetical protein K23481 VPS1; vacuolar protein sorting-associated protein 1
#
AEndoplasmic reticulum (ER) - Golgi transport
B Forward pathways
C Coat protein complex II (COP-II)
D TREMEDRAFT_71612 hypothetical protein K07953 SAR1; GTP-binding protein SAR1 [EC:3.6.5.-]
D TREMEDRAFT_41427 hypothetical protein K14004 SEC13; protein transport protein SEC13
D TREMEDRAFT_28108 hypothetical protein K14005 SEC31; protein transport protein SEC31
D TREMEDRAFT_71580 hypothetical protein K14006 SEC23; protein transport protein SEC23
D TREMEDRAFT_73779 hypothetical protein K14007 SEC24; protein transport protein SEC24
D TREMEDRAFT_35099 hypothetical protein K14007 SEC24; protein transport protein SEC24
D TREMEDRAFT_24544 hypothetical protein K14003 PREB; prolactin regulatory element-binding protein
D TREMEDRAFT_61295 hypothetical protein K20353 SEC16; COPII coat assembly protein SEC16
C TRAPP complex I
D TREMEDRAFT_31209 hypothetical protein K20300 TRAPPC1; trafficking protein particle complex subunit 1
D TREMEDRAFT_27244 hypothetical protein K20301 TRAPPC2; trafficking protein particle complex subunit 2
D TREMEDRAFT_62427 hypothetical protein K20301 TRAPPC2; trafficking protein particle complex subunit 2
D TREMEDRAFT_39893 hypothetical protein K20302 TRAPPC3; trafficking protein particle complex subunit 3
D TREMEDRAFT_31800 hypothetical protein K20303 TRAPPC4; trafficking protein particle complex subunit 4
D TREMEDRAFT_68769 hypothetical protein K20280 TRAPPC5; trafficking protein particle complex subunit 5
D TREMEDRAFT_45290 hypothetical protein K20304 TRAPPC6; trafficking protein particle complex subunit 6
C p24 family proteins
D TREMEDRAFT_31774 hypothetical protein K20346 TMED4_9_11; p24 family protein alpha
D TREMEDRAFT_19193 hypothetical protein K20347 TMED2; p24 family protein beta-1
D TREMEDRAFT_30552 hypothetical protein K20352 TMED10; p24 family protein delta-1
C PDI family proteins
D TREMEDRAFT_66841 hypothetical protein K09580 PDIA1; protein disulfide-isomerase A1 [EC:5.3.4.1]
D TREMEDRAFT_26937 hypothetical protein K09584 PDIA6; protein disulfide-isomerase A6 [EC:5.3.4.1]
D TREMEDRAFT_38433 hypothetical protein K09584 PDIA6; protein disulfide-isomerase A6 [EC:5.3.4.1]
C Rab GTPases
D TREMEDRAFT_40402 hypothetical protein K07874 RAB1A; Ras-related protein Rab-1A
D TREMEDRAFT_69204 hypothetical protein K07877 RAB2A; Ras-related protein Rab-2A
C Rab associated proteins
D TREMEDRAFT_68910 hypothetical protein K20359 RABAC1; PRA1 family protein 1
D TREMEDRAFT_71458 hypothetical protein K20359 RABAC1; PRA1 family protein 1
D TREMEDRAFT_34074 hypothetical protein K20372 TBC1D20; TBC1 domain family member 20
D TREMEDRAFT_29209 hypothetical protein K20360 TBC1D22; TBC1 domain family member 2
D TREMEDRAFT_70952 hypothetical protein K20360 TBC1D22; TBC1 domain family member 2
D TREMEDRAFT_30026 hypothetical protein K20362 YIF1; protein transport protein YIF1
D TREMEDRAFT_45944 hypothetical protein K20361 USO1; intracellular protein transport protein USO1
C ER-Golgi intermediate compartment (ERGIC) proteins
D TREMEDRAFT_16819 hypothetical protein K10082 LMAN2; lectin, mannose-binding 2
D TREMEDRAFT_66619 hypothetical protein K01230 MAN1A_C; mannosyl-oligosaccharide alpha-1,2-mannosidase [EC:3.2.1.113]
D TREMEDRAFT_33664 hypothetical protein K23741 MAN1B; endoplasmic reticulum Man9GlcNAc2 1,2-alpha-mannosidase [EC:3.2.1.209]
D TREMEDRAFT_43159 hypothetical protein K20366 ERGIC2; endoplasmic reticulum-Golgi intermediate compartment protein 2
D TREMEDRAFT_57589 hypothetical protein K20368 CNIH; protein cornichon
D TREMEDRAFT_42691 hypothetical protein K20369 ERV29; ER-derived vesicles protein
D TREMEDRAFT_45220 hypothetical protein K09490 HSPA5; endoplasmic reticulum chaperone BiP [EC:3.6.4.10]
D TREMEDRAFT_68922 hypothetical protein K20371 NUCB; nucleobindin
B Retrieval pathways
C Coat protein complex I (COP-I)
D TREMEDRAFT_39829 hypothetical protein K05236 COPA; coatomer subunit alpha
D TREMEDRAFT_71204 hypothetical protein K17301 COPB1; coatomer subunit beta
D TREMEDRAFT_65654 hypothetical protein K17302 COPB2; coatomer subunit beta'
D TREMEDRAFT_70972 hypothetical protein K17267 COPG; coatomer subunit gamma
D TREMEDRAFT_44480 hypothetical protein K20471 COPD; coatomer subunit delta
D TREMEDRAFT_26049 hypothetical protein K17268 COPE; coatomer subunit epsilon
D TREMEDRAFT_45819 hypothetical protein K20472 COPZ; coatomer subunit zeta
C NRZ (DSL1) complex
D TREMEDRAFT_62872 hypothetical protein K20473 NBAS; neuroblastoma-amplified sequence
D TREMEDRAFT_73946 hypothetical protein K20474 RINT1; RAD50-interacting protein 1
D TREMEDRAFT_59596 hypothetical protein K11578 ZW10; protein transport protein DSL1/ZW10
C Golgi to ER traffic proteins (GET)
D TREMEDRAFT_44803 hypothetical protein K22384 GET1; tail-anchored protein insertion receptor
D TREMEDRAFT_69103 hypothetical protein K22386 GET2; GET complex subunit GET2
D TREMEDRAFT_44911 hypothetical protein K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D TREMEDRAFT_38601 hypothetical protein K23387 GET4; golgi to ER traffic protein 4
D TREMEDRAFT_74048 hypothetical protein K23388 UBL4; ubiquitin-like protein 4
C Rab GTPases
D TREMEDRAFT_70574 hypothetical protein K07893 RAB6A; Ras-related protein Rab-6A
C Rab associated proteins
D TREMEDRAFT_44723 hypothetical protein K20476 RIC1; RAB6A-GEF complex partner protein 1
D TREMEDRAFT_71708 hypothetical protein K20477 RGP1; RAB6A-GEF complex partner protein 2
D TREMEDRAFT_43231 hypothetical protein K10949 KDELR; ER lumen protein retaining receptor
D TREMEDRAFT_26996 hypothetical protein K12481 RBSN; rabenosyn-5
D TREMEDRAFT_29209 hypothetical protein K20360 TBC1D22; TBC1 domain family member 2
D TREMEDRAFT_70952 hypothetical protein K20360 TBC1D22; TBC1 domain family member 2
B Others
C Oxysterol-binding proteins
D TREMEDRAFT_70659 hypothetical protein K20456 OSBP; oxysterol-binding protein 1
D TREMEDRAFT_40458 hypothetical protein K22285 OSBPL8; oxysterol-binding protein-related protein 8
D TREMEDRAFT_71037 hypothetical protein K20465 OSBPL9_10_11; oxysterol-binding protein-related protein 9/10/11
D TREMEDRAFT_71823 hypothetical protein K20465 OSBPL9_10_11; oxysterol-binding protein-related protein 9/10/11
C FXYD proteins
C YIPF proteins
D TREMEDRAFT_36275 hypothetical protein K22940 YIPF1_2; protein YIPF1/2
D TREMEDRAFT_23680 hypothetical protein K20363 YIPF5_7; protein YIPF5/7
D TREMEDRAFT_33675 hypothetical protein K22943 YIPF6; protein YIPF6
C ER membrane protein complex
D TREMEDRAFT_69081 hypothetical protein K23562 EMC1; ER membrane protein complex subunit 1
D TREMEDRAFT_29601 hypothetical protein K23563 EMC2; ER membrane protein complex subunit 2
D TREMEDRAFT_70470 hypothetical protein K23564 EMC3; ER membrane protein complex subunit 3
D TREMEDRAFT_28776 hypothetical protein K23565 EMC4; ER membrane protein complex subunit 4
D TREMEDRAFT_34467 hypothetical protein K23566 MMGT1; membrane magnesium transporter 1
D TREMEDRAFT_62459 hypothetical protein K23567 EMC6; ER membrane protein complex subunit 6
D TREMEDRAFT_61435 hypothetical protein K23570 EMC10; ER membrane protein complex subunit 10
C SEC61 complex
D TREMEDRAFT_43869 hypothetical protein K10956 SEC61A; protein transport protein SEC61 subunit alpha
D TREMEDRAFT_57528 hypothetical protein K09481 SEC61B; protein transport protein SEC61 subunit beta
D TREMEDRAFT_28632 hypothetical protein K07342 SEC61G; protein transport protein SEC61 subunit gamma and related proteins
C TRAP complex
C Multi-pass translocon (MPT) complex
D TREMEDRAFT_68451 hypothetical protein K24962 CCDC47; PAT complex subunit CCDC47
C Post-GPI attachment to proteins factors (PGAP)
D TREMEDRAFT_45408 hypothetical protein K05294 PGAP1; GPI inositol-deacylase [EC:3.-.-.-]
D TREMEDRAFT_22163 hypothetical protein K23553 PGAP3; post-GPI attachment to proteins factor 3
D TREMEDRAFT_34063 hypothetical protein K23362 MPPE1; ethanolamine phosphate phosphodiesterase [EC:3.1.-.-]
C Others
D TREMEDRAFT_65892 hypothetical protein K19998 SCFD1; sec1 family domain-containing protein 1
D TREMEDRAFT_36807 hypothetical protein K20724 TMEM33; transmembrane protein 33
D TREMEDRAFT_67728 hypothetical protein K21848 ARV1; lipid intermediate transporter
D TREMEDRAFT_45569 hypothetical protein K21850 KRE6; beta-glucan synthesis-associated protein KRE6
D TREMEDRAFT_69207 hypothetical protein K21850 KRE6; beta-glucan synthesis-associated protein KRE6
D TREMEDRAFT_34261 hypothetical protein K21850 KRE6; beta-glucan synthesis-associated protein KRE6
D TREMEDRAFT_16901 hypothetical protein K15620 GOLPH3; golgi phosphoprotein 3
D TREMEDRAFT_71568 hypothetical protein K23292 LNPK; endoplasmic reticulum junction formation protein lunapark
D TREMEDRAFT_67505 hypothetical protein K26683 GOLT1; vesicle transport protein GOT1
D TREMEDRAFT_43206 hypothetical protein K22698 SEY1; protein SEY1 [EC:3.6.5.-]
#
AAutophagy
B Autophagosome formation proteins
C ULK complex
D TREMEDRAFT_71468 hypothetical protein K08331 ATG13; autophagy-related protein 13
D TREMEDRAFT_73413 hypothetical protein K19730 ATG101; autophagy-related protein 101
C Atg1 complex
D TREMEDRAFT_67767 hypothetical protein K08269 ULK2; serine/threonine-protein kinase ULK2 [EC:2.7.11.1]
D TREMEDRAFT_71468 hypothetical protein K08331 ATG13; autophagy-related protein 13
C PI3K complex
D TREMEDRAFT_74295 hypothetical protein K00914 PIK3C3; phosphatidylinositol 3-kinase [EC:2.7.1.137]
D TREMEDRAFT_44965 hypothetical protein K08333 PIK3R4; phosphoinositide-3-kinase, regulatory subunit 4 [EC:2.7.11.1]
D TREMEDRAFT_66889 hypothetical protein K08334 BECN; beclin
C ATG9 transmembrane protein
D TREMEDRAFT_45223 hypothetical protein K17907 ATG9; autophagy-related protein 9
C Atg18-Atg2 complex
D TREMEDRAFT_71180 hypothetical protein K17908 WIPI1_2; autophagy-related protein 18
D TREMEDRAFT_30206 hypothetical protein K17906 ATG2; autophagy-related protein 2
C Atg12 conjugation proteins
D TREMEDRAFT_60758 hypothetical protein K08336 ATG12; ubiquitin-like protein ATG12
D TREMEDRAFT_74150 hypothetical protein K08337 ATG7; ubiquitin-like modifier-activating enzyme ATG7
D TREMEDRAFT_37740 hypothetical protein K08339 ATG5; autophagy-related protein 5
C Atg8 conjugation proteins
D TREMEDRAFT_41251 hypothetical protein K08341 GABARAP; GABA(A) receptor-associated protein
D TREMEDRAFT_63874 hypothetical protein K08342 ATG4; cysteine protease ATG4 [EC:3.4.22.-]
D TREMEDRAFT_74150 hypothetical protein K08337 ATG7; ubiquitin-like modifier-activating enzyme ATG7
D TREMEDRAFT_67322 hypothetical protein K08343 ATG3; ubiquitin-like-conjugating enzyme ATG3
B Cytoplasm to vacuolar targeting (CVT) pathway
C Selective cargos
D TREMEDRAFT_43495 hypothetical protein K01191 MAN2C1; alpha-mannosidase [EC:3.2.1.24]
D TREMEDRAFT_34565 hypothetical protein K01267 DNPEP; aspartyl aminopeptidase [EC:3.4.11.21]
C Cargo receptors
C Scaffold protein
C Other Cvt associated proteins
D TREMEDRAFT_25756 hypothetical protein K21996 SNX41_42; sorting nexin-41/42
D TREMEDRAFT_34892 hypothetical protein K17919 SNX4; sorting nexin-4
D TREMEDRAFT_45618 hypothetical protein K17900 ATG15; lipase ATG15 [EC:3.1.1.3]
D TREMEDRAFT_66622 hypothetical protein K21141 ATG27; autophagy-related protein 27
D TREMEDRAFT_38130 vacuolar protein 8 K08332 VAC8; vacuolar protein 8
B Mitophagy
C Cargo receptors
C Scaffold proteins
C PINK1-Parkin associated proteins
D TREMEDRAFT_45398 hypothetical protein K06030 MFN2; mitofusin 2 [EC:3.6.5.-]
D TREMEDRAFT_33615 hypothetical protein K17987 NBR1; next to BRCA1 gene 1 protein
C Other mitophagy associated proteins
D TREMEDRAFT_39456 hypothetical protein K00844 HK; hexokinase [EC:2.7.1.1]
D TREMEDRAFT_39033 hypothetical protein K00844 HK; hexokinase [EC:2.7.1.1]
D TREMEDRAFT_23604 hypothetical protein K17986 FUNDC1; FUN14 domain-containing protein 1
B Pexophagy
C Selective cargos
D TREMEDRAFT_25343 hypothetical protein K13336 PEX3; peroxin-3
D TREMEDRAFT_30508 hypothetical protein K13343 PEX14; peroxin-14
C Cargo receptors
C Other pexophagy associated proteins
D TREMEDRAFT_33615 hypothetical protein K17987 NBR1; next to BRCA1 gene 1 protein
D TREMEDRAFT_67430 hypothetical protein K13338 PEX1; peroxin-1
D TREMEDRAFT_43062 hypothetical protein K13339 PEX6; peroxin-6
B Aggrephagy
C Cargo receptors
D TREMEDRAFT_33615 hypothetical protein K17987 NBR1; next to BRCA1 gene 1 protein
C Scaffold proteins
C Other aggrephagy associated proteins
D TREMEDRAFT_42539 hypothetical protein K13525 VCP; transitional endoplasmic reticulum ATPase
D TREMEDRAFT_34982 hypothetical protein K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98]
B Xenophagy
C Cargo receptors
D TREMEDRAFT_33615 hypothetical protein K17987 NBR1; next to BRCA1 gene 1 protein
C Other xenophagy associated proteins
B Chaperone mediated autophagy (CMA)
C Selective cargos
D TREMEDRAFT_46109 hypothetical protein K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D TREMEDRAFT_38747 hypothetical protein K00873 PK; pyruvate kinase [EC:2.7.1.40]
D TREMEDRAFT_68743 hypothetical protein K04523 UBQLN; ubiquilin
C Cargo receptors
C Chaperones
D TREMEDRAFT_36956 hypothetical protein K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8
D TREMEDRAFT_43142 hypothetical protein K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8
D TREMEDRAFT_72780 heat-shock protein 90 K04079 HSP90A; molecular chaperone HtpG
C Co-chaperones
C Other CMA associated proteins
D TREMEDRAFT_66877 translation elongation factor 2 K03231 EEF1A; elongation factor 1-alpha
D TREMEDRAFT_33109 hypothetical protein K13289 CTSA; cathepsin A (carboxypeptidase C) [EC:3.4.16.5]
D TREMEDRAFT_45442 hypothetical protein K13289 CTSA; cathepsin A (carboxypeptidase C) [EC:3.4.16.5]
B Other autophagy associated proteins
C RNautophagy/DNautophagy
C Micronucleophagy
D TREMEDRAFT_38130 vacuolar protein 8 K08332 VAC8; vacuolar protein 8
C Midbophagy
D TREMEDRAFT_33615 hypothetical protein K17987 NBR1; next to BRCA1 gene 1 protein
C Glycophagy
C TRIM-directed selective autophagy
C ER-mitochondria tethering complex
D TREMEDRAFT_45398 hypothetical protein K06030 MFN2; mitofusin 2 [EC:3.6.5.-]
C mTORC1 complex
D TREMEDRAFT_40602 hypothetical protein K07203 MTOR; serine/threonine-protein kinase mTOR [EC:2.7.11.1]
D TREMEDRAFT_72755 hypothetical protein K08266 MLST8; target of rapamycin complex subunit LST8
D TREMEDRAFT_37429 hypothetical protein K07204 RAPTOR; regulatory associated protein of mTOR
D TREMEDRAFT_32602 hypothetical protein K07204 RAPTOR; regulatory associated protein of mTOR
C mTORC2 complex
D TREMEDRAFT_40602 hypothetical protein K07203 MTOR; serine/threonine-protein kinase mTOR [EC:2.7.11.1]
D TREMEDRAFT_72755 hypothetical protein K08266 MLST8; target of rapamycin complex subunit LST8
D TREMEDRAFT_27794 hypothetical protein K20410 MAPKAP1; target of rapamycin complex 2 subunit MAPKAP1/AVO1
D TREMEDRAFT_30887 hypothetical protein K08267 RICTOR; rapamycin-insensitive companion of mTOR
C SEACIT/GATOR1 complex
D TREMEDRAFT_35030 hypothetical protein K20404 DEPDC5; SEA/GATOR complex protein SEA1/DEPDC5
D TREMEDRAFT_70382 hypothetical protein K20405 NPRL2; nitrogen permease regulator 2
D TREMEDRAFT_35553 hypothetical protein K20406 NPRL3; nitrogen permease regulator 3
C SEACAT/GATOR2 complex
D TREMEDRAFT_42787 hypothetical protein K20408 WDR24; SEA/GATOR complex protein SEA2/WDR24
D TREMEDRAFT_31990 hypothetical protein K20409 WDR59; SEA/GATOR complex protein SEA3/WDR59
D TREMEDRAFT_73051 hypothetical protein K20407 MIOS; SEA/GATOR complex protein SEA4/MIOS
D TREMEDRAFT_43841 hypothetical protein K14299 SEH1; nucleoporin SEH1
D TREMEDRAFT_41427 hypothetical protein K14004 SEC13; protein transport protein SEC13
C KICSTOR complex
C Rab GTPases
D TREMEDRAFT_40402 hypothetical protein K07874 RAB1A; Ras-related protein Rab-1A
D TREMEDRAFT_58860 hypothetical protein K07901 RAB8A; Ras-related protein Rab-8A
C Rab associated proteins
C Others
D TREMEDRAFT_31483 hypothetical protein K07198 PRKAA; 5'-AMP-activated protein kinase, catalytic alpha subunit [EC:2.7.11.31]
D TREMEDRAFT_74197 hypothetical protein K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
D TREMEDRAFT_63178 hypothetical protein K17606 IGBP1; immunoglobulin-binding protein 1
D TREMEDRAFT_73876 hypothetical protein K21249 UVRAG; UV radiation resistance-associated gene protein
D TREMEDRAFT_45912 hypothetical protein K06902 UMF1; MFS transporter, UMF1 family
D TREMEDRAFT_67431 hypothetical protein K14209 SLC36A; solute carrier family 36 (proton-coupled amino acid transporter)
D TREMEDRAFT_42323 hypothetical protein K23952 VMA21; vacuolar ATPase assembly integral membrane protein VMA21
D TREMEDRAFT_70146 hypothetical protein K23952 VMA21; vacuolar ATPase assembly integral membrane protein VMA21
D TREMEDRAFT_28533 hypothetical protein K27411 PHAF1; phagosome assembly factor 1
#
AOthers
B NADPH oxidases (Nox) and associated proteins
C NADPH oxidases
D TREMEDRAFT_68048 hypothetical protein K08008 NOX1; NADPH oxidase 1
D TREMEDRAFT_32037 hypothetical protein K21421 NOX2; NADPH oxidase 2 [EC:1.-.-.-]
C Nox associated proteins
D TREMEDRAFT_36812 hypothetical protein K04392 RAC1; Ras-related C3 botulinum toxin substrate 1
D TREMEDRAFT_35867 hypothetical protein K04392 RAC1; Ras-related C3 botulinum toxin substrate 1
B Actin-binding proteins
C Myosins
D TREMEDRAFT_70354 hypothetical protein K10356 MYO1; myosin I
D TREMEDRAFT_63174 hypothetical protein K10357 MYO5; myosin V
D TREMEDRAFT_66517 hypothetical protein K10357 MYO5; myosin V
C Arp2/3 complex
D TREMEDRAFT_57929 hypothetical protein K05757 ARPC1A_B; actin related protein 2/3 complex, subunit 1A/1B
D TREMEDRAFT_72213 hypothetical protein K05758 ARPC2; actin related protein 2/3 complex, subunit 2
D TREMEDRAFT_67573 hypothetical protein K05756 ARPC3; actin related protein 2/3 complex, subunit 3
D TREMEDRAFT_60803 hypothetical protein K05755 ARPC4; actin related protein 2/3 complex, subunit 4
D TREMEDRAFT_68010 hypothetical protein K05754 ARPC5; actin related protein 2/3 complex, subunit 5
D TREMEDRAFT_24614 hypothetical protein K17260 ACTR2; actin-related protein 2
C Nucleation-promoting factors (NPFs)
D TREMEDRAFT_72246 hypothetical protein K23612 WASL; neural Wiskott-Aldrich syndrome protein
D TREMEDRAFT_71871 hypothetical protein K20520 DBNL; drebrin-like protein
D TREMEDRAFT_74832 hypothetical protein K20047 PAN1; actin cytoskeleton-regulatory complex protein PAN1
D TREMEDRAFT_43122 hypothetical protein K12562 AMPH; amphiphysin
D TREMEDRAFT_66217 hypothetical protein K20046 SLA1; actin cytoskeleton-regulatory complex protein SLA1
D TREMEDRAFT_68076 hypothetical protein K20522 LSB1_2; LAS seventeen-binding protein 1/2
D TREMEDRAFT_14638 hypothetical protein K20523 SH3YL1; SH3 domain-containing YSC84-like protein 1
D TREMEDRAFT_40282 hypothetical protein K20523 SH3YL1; SH3 domain-containing YSC84-like protein 1
D TREMEDRAFT_70420 hypothetical protein K20523 SH3YL1; SH3 domain-containing YSC84-like protein 1
D TREMEDRAFT_58218 hypothetical protein K20524 LSB5; LAS seventeen-binding protein 5
C Others
D TREMEDRAFT_67181 hypothetical protein K05759 PFN; profilin
D TREMEDRAFT_42030 hypothetical protein K05765 CFL; cofilin
D TREMEDRAFT_42219 hypothetical protein K17261 CAP1_2; adenylyl cyclase-associated protein
D TREMEDRAFT_61994 hypothetical protein K10396 KIF5; kinesin family member 5
B Mucins
C Membrane bound mucins
C Secretory mucins
B Rab GTPases of specific organelles
C Melanosome
C Auto phagosome
C Lipid droplets
D TREMEDRAFT_26769 hypothetical protein K07910 RAB18; Ras-related protein Rab-18
C Mitochondrion
B Rho GTPase associated proteins
C Rho GTPase-activating proteins
D TREMEDRAFT_38591 hypothetical protein K20649 ARHGAP39; Rho GTPase-activating protein 39
D TREMEDRAFT_70442 hypothetical protein K20643 RGD1; Rho GTPase-activating protein RGD1
D TREMEDRAFT_27278 hypothetical protein K08773 RALBP1; RalA-binding protein 1
C Rho guanine nucleotide exchange factors (GEFs)
D TREMEDRAFT_64749 hypothetical protein K20704 ECT2; protein ECT2
D TREMEDRAFT_25841 hypothetical protein K05727 DOCK3; dedicator of cytokinesis protein 3
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 15, 2024