+C Secretion system KO
#
Secretion System - Variovorax boronicumulans
%
!
AType I secretion system
B alpha-Hemolysin/cyclolysin transporter
C CKY39_10915 channel protein TolC K12340 tolC; outer membrane protein
C CKY39_24325 channel protein TolC K12340 tolC; outer membrane protein
B RTX toxin transporter
C CKY39_10915 channel protein TolC K12340 tolC; outer membrane protein
C CKY39_24325 channel protein TolC K12340 tolC; outer membrane protein
B Multiple protein transporter
C CKY39_10935 type I secretion system permease/ATPase K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
C CKY39_10930 secretion protein HylD K12537 hasE; membrane fusion protein, type I secretion system
C CKY39_10915 channel protein TolC K12340 tolC; outer membrane protein
C CKY39_24325 channel protein TolC K12340 tolC; outer membrane protein
B Adhesin protein transporter
C CKY39_23290 type I secretion system permease/ATPase K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
C CKY39_28465 type I secretion system permease/ATPase K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
C CKY39_28080 ABC transporter K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
C CKY39_23285 secretion protein HlyD K12542 lapC; membrane fusion protein, adhesin transport system
C CKY39_28460 hemolysin secretion protein D K12542 lapC; membrane fusion protein, adhesin transport system
C CKY39_28075 secretion protein HylD K12542 lapC; membrane fusion protein, adhesin transport system
C CKY39_23295 type I secretion protein TolC K12543 lapE; outer membrane protein, adhesin transport system
C CKY39_28455 transporter K12543 lapE; outer membrane protein, adhesin transport system
B RaxAB-RaxC type I secretion system protein
C CKY39_10915 channel protein TolC K12340 tolC; outer membrane protein
C CKY39_24325 channel protein TolC K12340 tolC; outer membrane protein
#
AType II secretion system
B General secretion pathway protein
C CKY39_05395 gspD; type II secretion system protein GspD K02453 gspD; general secretion pathway protein D
C CKY39_06750 type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
C CKY39_05390 type II secretion system protein GspE K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
C CKY39_05385 gspF; type II secretion system protein GspF K02455 gspF; general secretion pathway protein F
C CKY39_05435 gspG; type II secretion system protein GspG K02456 gspG; general secretion pathway protein G
C CKY39_05430 gspH; type II secretion system protein GspH K02457 gspH; general secretion pathway protein H
C CKY39_05425 gspI; type II secretion system protein GspI K02458 gspI; general secretion pathway protein I
C CKY39_05420 general secretion pathway protein J K02459 gspJ; general secretion pathway protein J
C CKY39_05415 general secretion pathway protein GspK K02460 gspK; general secretion pathway protein K
C CKY39_05410 general secretion pathway protein GspL K02461 gspL; general secretion pathway protein L
C CKY39_05405 general secretion pathway protein GspM K02462 gspM; general secretion pathway protein M
C CKY39_05400 general secretion pathway protein GspN K02463 gspN; general secretion pathway protein N
C CKY39_06970 prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
B Pilin secretion/fimbrial assembly protein
C CKY39_06980 pilB; type IV-A pilus assembly ATPase PilB K02652 pilB; type IV pilus assembly protein PilB
C CKY39_06975 type II secretion system protein F K02653 pilC; type IV pilus assembly protein PilC
C CKY39_06970 prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
C CKY39_17335 prepilin-type cleavage/methylation domain-containing protein K02655 pilE; type IV pilus assembly protein PilE
C CKY39_08715 prepilin-type cleavage/methylation domain-containing protein K02655 pilE; type IV pilus assembly protein PilE
C CKY39_32395 type 4 fimbrial biosynthesis protein K02655 pilE; type IV pilus assembly protein PilE
C CKY39_20070 type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF
C CKY39_28290 two-component system response regulator K02657 pilG; twitching motility two-component system response regulator PilG
C CKY39_28285 response regulator K02658 pilH; twitching motility two-component system response regulator PilH
C CKY39_05775 pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM
C CKY39_05780 fimbrial protein K02663 pilN; type IV pilus assembly protein PilN
C CKY39_05785 pilus assembly protein PilO K02664 pilO; type IV pilus assembly protein PilO
C CKY39_05790 pilus assembly protein PilP K02665 pilP; type IV pilus assembly protein PilP
C CKY39_29810 type IV pili twitching motility protein PilT K02669 pilT; twitching motility protein PilT
C CKY39_29815 type IV pili twitching motility protein PilT K02670 pilU; twitching motility protein PilU
C CKY39_18255 type IV pili twitching motility protein PilT K02670 pilU; twitching motility protein PilU
C CKY39_17320 pilV; type IV pilus modification protein PilV K02671 pilV; type IV pilus assembly protein PilV
C CKY39_08710 pilV; type IV pilus modification protein PilV K02671 pilV; type IV pilus assembly protein PilV
C CKY39_32405 pilus assembly protein PilV K02671 pilV; type IV pilus assembly protein PilV
C CKY39_08705 pilus assembly protein PilW K02672 pilW; type IV pilus assembly protein PilW
C CKY39_32410 pilus assembly protein PilW K02672 pilW; type IV pilus assembly protein PilW
C CKY39_17330 hypothetical protein K02673 pilX; type IV pilus assembly protein PilX
C CKY39_32415 pilus assembly protein PilX K02673 pilX; type IV pilus assembly protein PilX
C CKY39_08695 pilus assembly protein PilY K02674 pilY1; type IV pilus assembly protein PilY1
C CKY39_32420 pilus assembly protein PilY K02674 pilY1; type IV pilus assembly protein PilY1
C CKY39_17065 pilus assembly protein PilZ K02676 pilZ; type IV pilus assembly protein PilZ
C CKY39_17315 prepilin-type cleavage/methylation domain-containing protein K08084 fimT; type IV fimbrial biogenesis protein FimT
C CKY39_08690 prepilin-type cleavage/methylation domain-containing protein K08084 fimT; type IV fimbrial biogenesis protein FimT
C CKY39_32400 pilus assembly protein FimT K08084 fimT; type IV fimbrial biogenesis protein FimT
B Tight adherence (Tad) export apparatus
C CKY39_21360 prepilin peptidase K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
C CKY39_28005 peptidase A24 K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
C CKY39_21355 cpaB; Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB
C CKY39_28010 cpaB; Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB
C CKY39_21350 type II and III secretion system protein K02280 cpaC; pilus assembly protein CpaC
C CKY39_28015 hypothetical protein K02280 cpaC; pilus assembly protein CpaC
C CKY39_21320 histidine kinase K02282 cpaE; pilus assembly protein CpaE
C CKY39_28020 histidine kinase K02282 cpaE; pilus assembly protein CpaE
C CKY39_21315 pilus assembly protein CpaF K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
C CKY39_28025 pilus assembly protein CpaF K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
C CKY39_21310 pilus assembly protein TadB K12510 tadB; tight adherence protein B
C CKY39_28030 secretion system protein K12510 tadB; tight adherence protein B
C CKY39_21305 type II secretion system protein K12511 tadC; tight adherence protein C
C CKY39_28035 secretion system protein K12511 tadC; tight adherence protein C
C CKY39_28040 hypothetical protein K27079 tadD; tight adherence protein D
C CKY39_28060 hypothetical protein K27080 tadG; tight adherence protein G
C CKY39_21335 Flp family type IVb pilin K02651 flp; pilus assembly protein Flp/PilA
C CKY39_21340 Flp family type IVb pilin K02651 flp; pilus assembly protein Flp/PilA
C CKY39_28000 Flp family type IVb pilin K02651 flp; pilus assembly protein Flp/PilA
B Toxin co-regulated pilus biosynthesis protein
B MSHA pilus biogenesis protein
B Type IVa pilus homolog protein
C CKY39_06970 prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
C CKY39_29810 type IV pili twitching motility protein PilT K02669 pilT; twitching motility protein PilT
C CKY39_25685 YggT family protein K02221 yggT; YggT family protein
B Archaeal flagellar protein
B Competence-related DNA transformation transporter (DNA-T) core components
C CKY39_10085 hypothetical protein K02237 comEA; competence protein ComEA
C CKY39_13355 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC
B Competence-related DNA transformation transporter (DNA-T) related proteins
#
AType III secretion system
B Type III secretion core apparatus
B Type III secretion related proteins
B Flagellar export apparatus
C CKY39_08395 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
C CKY39_08390 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
C CKY39_08330 flagellar protein FhlB K04061 flhB2; flagellar biosynthesis protein
C CKY39_08290 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
C CKY39_08280 flagellar assembly protein K02411 fliH; flagellar assembly protein FliH
C CKY39_08275 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
C CKY39_08250 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
C CKY39_08245 fliO; flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ
C CKY39_08240 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
C CKY39_08235 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
C CKY39_08230 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
#
AType IV secretion system
B Conjugal DNA-protein transfer (VirB/D) protein
B DNA uptake competence system protein
B Conjugal transfer pilus assembly protein
C CKY39_28415 disulfide isomerase K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
B Pertussis toxin exporter
B Cag pathogenicity island (PAI) protein
B Icm/Dot secretion system protein
B Trb secretion system protein
#
AType V secretion system
B Autotransporter-1 (AT-1) family
C CKY39_28815 hypothetical protein K12685 ssp; subtilase-type serine protease [EC:3.4.21.-]
B Autotransporter-2 (AT-2) family
B Two-partner secretion (TPS) family
#
AType VI secretion system
B Imp/Vas secretion system core components
C CKY39_02965 icmF; type VI secretion system membrane subunit TssM K11891 impL; type VI secretion system protein ImpL
C CKY39_16620 icmF; type VI secretion system membrane subunit TssM K11891 impL; type VI secretion system protein ImpL
C CKY39_31655 icmF; type VI secretion system membrane subunit TssM K11891 impL; type VI secretion system protein ImpL
C CKY39_01305 icmF; type VI secretion system membrane subunit TssM K11891 impL; type VI secretion system protein ImpL
C CKY39_02960 type VI secretion system protein TssL K11892 impK; type VI secretion system protein ImpK
C CKY39_16615 type VI secretion system protein TssL K11892 impK; type VI secretion system protein ImpK
C CKY39_31635 DotU family type IV/VI secretion system protein K11892 impK; type VI secretion system protein ImpK
C CKY39_01300 type VI secretion system protein TssL K11892 impK; type VI secretion system protein ImpK
C CKY39_02950 type VI secretion system baseplate subunit TssK K11893 impJ; type VI secretion system protein ImpJ
C CKY39_31630 type VI secretion system baseplate subunit TssK K11893 impJ; type VI secretion system protein ImpJ
C CKY39_01295 type VI secretion system baseplate subunit TssK K11893 impJ; type VI secretion system protein ImpJ
C CKY39_16635 type VI secretion system baseplate subunit TssG K11895 impH; type VI secretion system protein ImpH
C CKY39_31590 type VI secretion system baseplate subunit TssG K11895 impH; type VI secretion system protein ImpH
C CKY39_01235 type VI secretion system baseplate subunit TssG K11895 impH; type VI secretion system protein ImpH
C CKY39_03025 vasA; type VI secretion system baseplate subunit TssF K11896 impG; type VI secretion system protein ImpG
C CKY39_31595 vasA; type VI secretion system baseplate subunit TssF K11896 impG; type VI secretion system protein ImpG
C CKY39_01230 vasA; type VI secretion system baseplate subunit TssF K11896 impG; type VI secretion system protein ImpG
C CKY39_14500 vasA; type VI secretion system baseplate subunit TssF K11896 impG; type VI secretion system protein ImpG
C CKY39_03020 type VI secretion system baseplate subunit TssE K11897 impF; type VI secretion system protein ImpF
C CKY39_31600 type VI secretion system baseplate subunit TssE K11897 impF; type VI secretion system protein ImpF
C CKY39_01225 type VI secretion system baseplate subunit TssE K11897 impF; type VI secretion system protein ImpF
C CKY39_14495 type VI secretion system baseplate subunit TssE K11897 impF; type VI secretion system protein ImpF
C CKY39_03085 type VI secretion system contractile sheath large subunit K11900 impC; type VI secretion system protein ImpC
C CKY39_31610 type VI secretion system contractile sheath large subunit K11900 impC; type VI secretion system protein ImpC
C CKY39_01210 type VI secretion system contractile sheath large subunit K11900 impC; type VI secretion system protein ImpC
C CKY39_03090 type VI secretion system contractile sheath small subunit K11901 impB; type VI secretion system protein ImpB
C CKY39_31615 type VI secretion system contractile sheath small subunit K11901 impB; type VI secretion system protein ImpB
C CKY39_01205 type VI secretion system contractile sheath small subunit K11901 impB; type VI secretion system protein ImpB
C CKY39_03095 type VI secretion system protein TssA K11902 impA; type VI secretion system protein ImpA
C CKY39_16640 type VI secretion system protein TssA K11902 impA; type VI secretion system protein ImpA
C CKY39_31640 type VI secretion system protein TssA K11902 impA; type VI secretion system protein ImpA
C CKY39_01200 type VI secretion system protein TssA K11902 impA; type VI secretion system protein ImpA
C CKY39_03080 type VI secretion system tube protein Hcp K11903 hcp; type VI secretion system secreted protein Hcp
C CKY39_31605 type VI secretion system tube protein Hcp K11903 hcp; type VI secretion system secreted protein Hcp
C CKY39_01215 Hcp1 family type VI secretion system effector K11903 hcp; type VI secretion system secreted protein Hcp
C CKY39_17115 type VI secretion system tip protein VgrG K11904 vgrG; type VI secretion system secreted protein VgrG
C CKY39_31555 type VI secretion system tip protein VgrG K11904 vgrG; type VI secretion system secreted protein VgrG
C CKY39_01245 type VI secretion system tip protein VgrG K11904 vgrG; type VI secretion system secreted protein VgrG
C CKY39_03040 type VI secretion system tip protein VgrG K11904 vgrG; type VI secretion system secreted protein VgrG
C CKY39_31580 type VI secretion system tip protein VgrG K11904 vgrG; type VI secretion system secreted protein VgrG
C CKY39_03100 type VI secretion system lipoprotein TssJ K11906 vasD; type VI secretion system protein VasD
C CKY39_01290 type VI secretion system lipoprotein TssJ K11906 vasD; type VI secretion system protein VasD
C CKY39_03035 clpV; type VI secretion system ATPase TssH K11907 vasG; type VI secretion system protein VasG
C CKY39_16610 clpV; type VI secretion system ATPase TssH K11907 vasG; type VI secretion system protein VasG
C CKY39_31585 clpV; type VI secretion system ATPase TssH K11907 vasG; type VI secretion system protein VasG
C CKY39_01240 clpV; type VI secretion system ATPase TssH K11907 vasG; type VI secretion system protein VasG
B Imp/Vas secretion system related proteins
C CKY39_02970 type VI secretion system-associated protein TagF K11890 impM; type VI secretion system protein ImpM
C CKY39_16625 type VI secretion system-associated protein TagF K11890 impM; type VI secretion system protein ImpM
C CKY39_31650 type VI secretion system-associated protein TagF K11890 impM; type VI secretion system protein ImpM
C CKY39_01310 type VI secretion system-associated protein TagF K11890 impM; type VI secretion system protein ImpM
C CKY39_03015 virulence protein SciE type K11898 impE; type VI secretion system protein ImpE
C CKY39_01220 virulence protein SciE type K11898 impE; type VI secretion system protein ImpE
#
AType VII secretion system
B ESX secretion system protein
#
AChaperone-usher system
B Type 1 pilus assembly protein
C CKY39_03440 fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
C CKY39_03445 fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
C CKY39_03435 P pilus assembly chaperone PapD K07346 fimC; fimbrial chaperone protein
C CKY39_26940 hypothetical protein K07346 fimC; fimbrial chaperone protein
C CKY39_13750 pilus assembly protein PapD K07346 fimC; fimbrial chaperone protein
C CKY39_03455 fimbrial assembly protein K07347 fimD; outer membrane usher protein
C CKY39_26945 hypothetical protein K07347 fimD; outer membrane usher protein
C CKY39_13760 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
C CKY39_26935 SCPU domain-containing protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
C CKY39_26950 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
C CKY39_13745 spore coat protein U K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
B P pilus assembly protein
B Mat/Ecp fimbriae assembly protein
#
AExtracellular nucleation-precipitation pathway
B Curli assembly protein
#
ASec (secretion) system
B Prokaryotic Sec-SRP core components
C CKY39_06920 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
C CKY39_07290 protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
C CKY39_32065 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
C CKY39_03195 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
C CKY39_32060 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
C CKY39_22805 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
C CKY39_31460 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
C CKY39_04820 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C CKY39_27510 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
C CKY39_32070 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
C CKY39_33020 membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
B Prokaryotic Sec-SRP related proteins
B Eukaryotic Sec-SRP protein
C CKY39_04820 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
#
ATwin-arginine translocation (Tat) system
B Twin-arginine translocation (Tat) pathway protein
C CKY39_05985 twin-arginine translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA
C CKY39_05990 tatB; twin-arginine translocase subunit TatB K03117 tatB; sec-independent protein translocase protein TatB
C CKY39_05995 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: December 11, 2023