+E Transcription factors KO
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Transcription Factors - Vibrio parahaemolyticus BB22OP
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D VPBB_0181 DNA-cytosine methyltransferase() K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D VPBB_A1540 Arabinose operon regulatory protein K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D VPBB_1558 Type III secretion regulator ExsA K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA
D VPBB_0811 putative transcriptional regulator AraC/XylS K19693 tfoS; AraC family transcriptional regulator, chitin signaling transcriptional activator
D VPBB_A0371 Transcriptional regulator AraC family K13652 K13652; AraC family transcriptional regulator
D VPBB_A0038 ADA regulatory protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
C LysR family
D VPBB_0663 Glycine cleavage system transcriptional activator GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D VPBB_0595 Glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D VPBB_0034 HTH-type transcriptional regulator IlvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D VPBB_1814 Transcriptional activator MetR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D VPBB_0503 Transcriptional activator NhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D VPBB_2610 Hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D VPBB_A0411 Hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D VPBB_0555 Hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D VPBB_2415 Chromosome initiation inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D VPBB_0358 CalR, calcium-responsive transcription factor, LysR family K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon
D VPBB_2003 Cyn operon transcriptional activator K10918 aphB; LysR family transcriptional regulator, transcriptional activator AphB
D VPBB_1030 Cys regulon transcriptional activator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D VPBB_A1555 transcriptional regulator K13636 dsdC; LysR family transcriptional regulator, D-serine deaminase activator
D VPBB_A0034 Transcriptional regulator LysR family K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
C DeoR family
D VPBB_2215 Glycerol-3-phosphate regulon repressor, DeoR family K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
C LacI family
D VPBB_A0986 Ribose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D VPBB_2222 Galactose operon repressor, GalR-LacI family of transcriptional regulators K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D VPBB_0266 Transcriptional (co)regulator CytR K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D VPBB_A0761 Fructose repressor FruR LacI family K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D VPBB_0680 Trehalose operon transcriptional repressor K03485 treR; LacI family transcriptional regulator, trehalose operon repressor
D VPBB_0980 Purine nucleotide synthesis repressor K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D VPBB_0053 Gluconate utilization system Gnt-I transcriptional repressor K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D VPBB_2230 Evolved beta-D-galactosidase transcriptional repressor K12113 ebgR; LacI family transcriptional regulator, ebg operon repressor
C GntR family
D VPBB_1201 Histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D VPBB_1906 Transcriptional regulator for fatty acid degradation FadR, GntR family K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D VPBB_2342 Transcriptional repressor for pyruvate dehydrogenase complex K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D VPBB_A1136 putative transcriptional regulator of pyridoxine metabolism K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D VPBB_0363 Transcriptional regulator SwrZ K15735 csiR; GntR family transcriptional regulator, carbon starvation induced regulator
C TetR/AcrR family
D VPBB_A1018 HTH-type transcriptional regulator BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D VPBB_0039 Transcriptional regulator, TetR family K18136 acrR; TetR/AcrR family transcriptional regulator, multidrug resistance operon repressor
D VPBB_0188 Transcriptional regulator SlmA, TetR family K05501 slmA; TetR/AcrR family transcriptional regulator
D VPBB_2338 Quorum-sensing regulator OpaR K10913 hapR; TetR/AcrR family transcriptional regulator, hemagglutinin/protease regulatory protein
D VPBB_A1288 Transcriptional regulator TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D VPBB_A0958 Transcriptional regulator TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D VPBB_2780 Unsaturated fatty acid biosynthesis repressor FabR, TetR family K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
C Lrp/AsnC family
D VPBB_0066 Regulatory protein AsnC K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D VPBB_1033 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D VPBB_A1569 PutR transcriptional activator of PutA and PutP K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D VPBB_A0084 Transcriptional regulator AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D VPBB_A1114 Transcriptional regulator AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D VPBB_0904 Putative HTH-type transcriptional regulator ybaO K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
D VPBB_A0330 Transcriptional regulator VpsT family K04333 csgD; LuxR family transcriptional regulator, csgAB operon transcriptional regulatory protein
D VPBB_A1319 Transcriptional regulator CpsQ K04333 csgD; LuxR family transcriptional regulator, csgAB operon transcriptional regulatory protein
D VPBB_2530 transcriptional regulator, LuxR family K04333 csgD; LuxR family transcriptional regulator, csgAB operon transcriptional regulatory protein
D VPBB_A1320 Transcriptional regulator CpsS K20918 vpsT; LuxR family transcriptional regulator, positive regulator of biofilm formation
D VPBB_A1486 Transcriptional activator of maltose regulon MalT K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
C MarR family
D VPBB_A1119 putative transcription regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D VPBB_A1544 Organic hydroperoxide resistance transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D VPBB_A0606 HTH-type transcriptional regulator cueR K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D VPBB_2744 HTH-type transcriptional regulator zntR K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
D VPBB_A0311 Redox-sensitive transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
D VPBB_A1345 Transcriptional regulator MerR family associated with photolyase K21972 bluR; MerR family transcriptional regulator, repressor of blue light- and temperature-responsive genes
C Fur family
D VPBB_0790 Ferric uptake regulation protein FUR K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D VPBB_2587 Zinc uptake regulation protein ZUR K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
D VPBB_A0069 Transcriptional regulator KdgR KDG operon repressor K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
C CRP/FNR family
D VPBB_1803 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D VPBB_2647 Cyclic AMP receptor protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D VPBB_1441 Fumarate and nitrate reduction regulatory protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
D VPBB_0567 Iron-sulfur cluster regulator IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D VPBB_2659 Nitrite-sensitive transcriptional repressor NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
D VPBB_2808 Transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D VPBB_A0452 Arsenical resistance operon repressor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D VPBB_0504 Transcriptional activator HlyU K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator
C XRE family
C PadR family
D VPBB_2619 Transcriptional regulator, PadR family, AphA K10917 aphA; PadR family transcriptional regulator, regulatory protein AphA
C Other families
D VPBB_A1590 Sialic acid utilization regulator RpiR family K15835 murR; RpiR family transcriptional regulator, murPQ operon repressor
D VPBB_1159 Phosphogluconate repressor HexR, RpiR family K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D VPBB_2769 Biotin-protein ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D VPBB_2733 DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D VPBB_0526 Transcriptional repressor protein TrpR K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D VPBB_A0808 SgrR sugar-phosphate stress transcriptional activator of SgrS small RNA K11925 sgrR; SgrR family transcriptional regulator
D VPBB_1635 Putrescine utilization regulator K14056 puuR; HTH-type transcriptional regulator, repressor for puuD
D VPBB_2892 hypothetical protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D VPBB_2071 Polar flagellar regulatory protein FlaK K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D VPBB_0491 Capsule transcriptional regulator CpsR K20919 vpsR; sigma-54 dependent transcriptional regulator, positive regulator of biofilm formation
D VPBB_1563 Sigma-54 dependent transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D VPBB_1307 Sigma-54 dependent transcriptional regulator, FhlA family K11914 sfa2; sigma-54 dependent transcriptional regulator
D VPBB_1117 Anaerobic nitric oxide reductase transcription regulator NorR K12266 norR; anaerobic nitric oxide reductase transcription regulator
D VPBB_A0106 Sugar diacid utilization regulator SdaR K02647 cdaR; carbohydrate diacid regulator
B Ribbon-helix-helix
C CopG family
C Other families
D VPBB_2623 Methionine repressor MetJ K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D VPBB_A1577 Proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D VPBB_2182 Cell division protein BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D VPBB_A1599 Chromosome (plasmid) partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D VPBB_2926 Chromosome (plasmid) partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D VPBB_0783 Transcriptional activator RfaH K05785 rfaH; transcriptional antiterminator RfaH
D VPBB_0333 Arginine pathway regulatory protein ArgR, repressor of arg regulon K03402 argR; transcriptional regulator of arginine metabolism
D VPBB_0786 N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family K02565 nagC; N-acetylglucosamine repressor
D VPBB_1874 Mlc, transcriptional repressor of MalT (the transcriptional activator of maltose regulon) and manXYZ operon K15545 mlc; transcriptional regulator of PTS gene
D VPBB_0375 Mannitol operon repressor K02562 mtlR; mannitol operon repressor
D VPBB_A0123 Thiaminase II K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D VPBB_1721 Transcriptional repressor protein TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D VPBB_2743 Transcriptional activator of cad operon K03765 cadC; transcriptional activator of cad operon
D VPBB_2090 Glycine cleavage system transcriptional antiactivator GcvR K03567 gcvR; glycine cleavage system transcriptional repressor
D VPBB_1101 Phage shock protein C K03973 pspC; phage shock protein C
D VPBB_0374 Phosphoenolpyruvate-dihydroxyacetone phosphotransferase operon regulatory protein DhaR K05880 dhaR; transcriptional activator for dhaKLM operon
D VPBB_A0900 Regulator of nucleoside diphosphate kinase K06140 rnk; regulator of nucleoside diphosphate kinase
D VPBB_0171 putative transcriptional regulator K07733 alpA; prophage regulatory protein
D VPBB_2432 UPF0301 protein YqgE K07735 algH; putative transcriptional regulator
D VPBB_2326 C4-type zinc finger protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D VPBB_0648 Ribonucleotide reductase transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D VPBB_0645 Curlin genes transcriptional activator K11926 crl; sigma factor-binding protein Crl
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0