+F Repair protein KO
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DNA Repair and Recombination Proteins - Vitis vinifera (wine grape)
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D 100257026 DNA oxidative demethylase ALKBH2 isoform X1 K10859 ALKBH2; DNA oxidative demethylase [EC:1.14.11.33]
D 100251846 DExH-box ATP-dependent RNA helicase DExH14 isoform X1 K18663 ASCC3; activating signal cointegrator complex subunit 3 [EC:5.6.2.4]
D 100243038 deoxyribodipyrimidine photo-lyase isoform X1 K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E 100253025 uracil-DNA glycosylase, mitochondrial K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E 100250307 DNA-3-methyladenine glycosylase isoform X2 K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E 100265491 adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E 100244192 methyl-CpG-binding domain protein 4-like protein isoform X1 K10801 MBD4; methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
E 100264280 N-glycosylase/DNA lyase OGG1 isoform X2 K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
E 100257083 putative DNA glycosylase At3g47830 isoform X1 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 100268015 endonuclease III homolog 1, chloroplastic isoform X1 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E 100264349 DNA-(apurinic or apyrimidinic site) endonuclease 2 isoform X3 K10772 APEX2; AP endonuclease 2 [EC:3.1.11.2]
D Long Patch-BER factors
E DNA polymerase delta complex
F 100246530 DNA polymerase delta catalytic subunit isoform X1 K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F 100241865 DNA polymerase delta small subunit isoform X1 K02328 POLD2; DNA polymerase delta subunit 2
F 100250468 uncharacterized protein LOC100250468 isoform X1 K03504 POLD3; DNA polymerase delta subunit 3
F 100263057 uncharacterized protein LOC100263057 K03505 POLD4; DNA polymerase delta subunit 4
E DNA polymerase epsilon complex
F 100241432 DNA polymerase epsilon catalytic subunit A K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
F 100257823 DNA polymerase epsilon subunit B isoform X1 K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
F 100262207 DNA polymerase II subunit B4 isoform X2 K02326 POLE3; DNA polymerase epsilon subunit 3 [EC:2.7.7.7]
E 100260468 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 100248466 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 100242559 flap endonuclease 1 isoform X2 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E 100256907 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Short Patch-BER factors
E 100266851 DNA-repair protein XRCC1 isoform X1 K10803 XRCC1; DNA-repair protein XRCC1
D Other BER factors
E 100247070 tyrosyl-DNA phosphodiesterase 1 isoform X1 K10862 TDP1; tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
E 100259037 transcription factor bHLH140 isoform X1 K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E 100243613 polynucleotide 3'-phosphatase ZDP K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78]
E 100248348 DNA polymerase lambda isoform X1 K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
E 100261796 poly [ADP-ribose] polymerase 1 K24070 PARP1; poly [ADP-ribose] polymerase 1 [EC:2.4.2.30]
E 100251949 protein ADP-ribosyltransferase PARP3 K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
E 100257212 poly [ADP-ribose] polymerase 2 isoform X1 K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
F 100265647 DNA repair protein RAD4 K10838 XPC; xeroderma pigmentosum group C-complementing protein
F 100245820 ubiquitin receptor RAD23c isoform X2 K10839 RAD23; UV excision repair protein RAD23
F 100244610 ubiquitin receptor RAD23c K10839 RAD23; UV excision repair protein RAD23
F 100267246 ubiquitin receptor RAD23b K10839 RAD23; UV excision repair protein RAD23
E Cul4-DDB2 complex
F 100259489 RING-box protein 1a isoform X2 K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 100246271 RING-box protein 1A K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 100233055 cullin-4 K10609 CUL4; cullin 4
F 100256664 DNA damage-binding protein 1 K10610 DDB1; DNA damage-binding protein 1
F 100250121 protein DAMAGED DNA-BINDING 2 K10140 DDB2; DNA damage-binding protein 2
E NER4 complex
F 100244043 uncharacterized protein LOC100244043 K15082 RAD7; DNA repair protein RAD7
F 100252702 uncharacterized protein LOC100252702 K15082 RAD7; DNA repair protein RAD7
F 100267049 DNA repair protein RAD16 isoform X1 K15083 RAD16; DNA repair protein RAD16
F 100248564 ATP-dependent helicase rhp16 isoform X1 K15083 RAD16; DNA repair protein RAD16
F 100253670 ATP-dependent helicase rhp16 isoform X1 K15083 RAD16; DNA repair protein RAD16
F 100258816 DNA repair protein RAD16 K15083 RAD16; DNA repair protein RAD16
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
F 100264310 DNA-directed RNA polymerase II subunit RPB1 K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F 104878267 LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1 K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F 100252267 DNA-directed RNA polymerase II subunit RPB2 K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F 100258926 DNA-directed RNA polymerases II, IV and V subunit 3 K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
F 100245383 DNA-directed RNA polymerase II subunit 4 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 100246461 DNA-directed RNA polymerases IV and V subunit 4 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 100259318 DNA-directed RNA polymerases II and IV subunit 5A K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 100258335 DNA-directed RNA polymerase V subunit 5C isoform X1 K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 100853213 DNA-directed RNA polymerase V subunit 5A isoform X1 K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 100243758 DNA-directed RNA polymerases II and V subunit 6B K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F 100253791 DNA-directed RNA polymerases II, IV and V subunit 6A K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F 100248358 DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F 100249225 DNA-directed RNA polymerases II and V subunit 8A isoform X2 K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F 100254322 DNA-directed RNA polymerases II and V subunit 8A K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F 100253286 DNA-directed RNA polymerases II, IV and V subunit 9A K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F 100267114 DNA-directed RNA polymerase subunit 10-like protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F 100259467 DNA-directed RNA polymerases II, IV and V subunit 11 K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
E Cul4-CSA complex
F 100259489 RING-box protein 1a isoform X2 K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 100246271 RING-box protein 1A K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 100233055 cullin-4 K10609 CUL4; cullin 4
F 100256664 DNA damage-binding protein 1 K10610 DDB1; DNA damage-binding protein 1
F 100247086 WD repeat-containing protein ATCSA-1 isoform X2 K10570 ERCC8; DNA excision repair protein ERCC-8
E Other TCR factor
F 100253251 protein CHROMATIN REMODELING 8 K10841 ERCC6; DNA excision repair protein ERCC-6
F 100250210 UV-stimulated scaffold protein A homolog K23720 UVSSA; UV-stimulated scaffold protein A
F 100253769 transcription elongation factor 1 homolog isoform X1 K25829 ELOF1; transcription elongation factor 1
F 100246889 transcription elongation factor 1 homolog K25829 ELOF1; transcription elongation factor 1
D TFIIH complex
E 100250174 general transcription and DNA repair factor IIH helicase subunit XPB1 K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E 100240869 general transcription and DNA repair factor IIH helicase subunit XPD K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E 100249755 general transcription and DNA repair factor IIH subunit TFB1-1 isoform X2 K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E 100253554 general transcription factor IIH subunit 2 isoform X1 K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E 100253978 general transcription and DNA repair factor IIH subunit TFB4 K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E 100258601 general transcription and DNA repair factor IIH subunit TFB2 K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E 100244503 cyclin-dependent kinase D-1 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 100247566 cyclin-dependent kinase D-3 isoform X1 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 100252789 cyclin-H1-1 isoform X1 K06634 CCNH; cyclin H
E 100246771 uncharacterized protein LOC100246771 K10842 MNAT1; CDK-activating kinase assembly factor MAT1
D RPA (replication factor A)
E 100263039 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 100268119 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 100255412 replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 100254758 replication protein A 32 kDa subunit B isoform X2 K10739 RFA2; replication factor A2
E 100245725 replication protein A 32 kDa subunit A K10739 RFA2; replication factor A2
E 100264936 replication protein A 14 kDa subunit B K10740 RPA3; replication factor A3
E 100244193 replication protein A 14 kDa subunit B K10740 RPA3; replication factor A3
D Other NER factors
E 100244316 DNA excision repair protein ERCC-1 isoform X1 K10849 ERCC1; DNA excision repair protein ERCC-1
E 100247853 DNA repair endonuclease UVH1 K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E 100245663 DNA repair protein UVH3 isoform X1 K10846 ERCC5; DNA excision repair protein ERCC-5
E 100256907 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E 100260012 MMS19 nucleotide excision repair protein homolog isoform X2 K15075 MET18; DNA repair/transcription protein MET18/MMS19
E 100265464 cullin-3A K03869 CUL3; cullin 3
E 100254227 cullin-3B isoform X2 K03869 CUL3; cullin 3
E 100258618 uncharacterized protein LOC100258618 K03872 ELOC; elongin-C
E 100244093 polyubiquitin 9 K03873 ELOB; elongin-B
E 100252279 uncharacterized protein LOC100252279 isoform X2 K15077 ELA1; elongin-A
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E 100268052 MSH2; DNA mismatch repair protein MSH2 K08735 MSH2; DNA mismatch repair protein MSH2
E 100266933 DNA mismatch repair protein MSH3 isoform X1 K08736 MSH3; DNA mismatch repair protein MSH3
E 100255608 DNA mismatch repair protein MSH6 K08737 MSH6; DNA mismatch repair protein MSH6
E 100260983 MSH7; DNA mismatch repair protein MSH7 isoform X2 K08737 MSH6; DNA mismatch repair protein MSH6
D MutL homologs
E 100854779 DNA mismatch repair protein MLH1 isoform X1 K08734 MLH1; DNA mismatch repair protein MLH1
E 100255596 DNA mismatch repair protein PMS1 K10858 PMS2; DNA mismatch repair protein PMS2
E 100253902 DNA mismatch repair protein MLH3 isoform X1 K08739 MLH3; DNA mismatch repair protein MLH3
D DNA polymerase delta complex
E 100246530 DNA polymerase delta catalytic subunit isoform X1 K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E 100241865 DNA polymerase delta small subunit isoform X1 K02328 POLD2; DNA polymerase delta subunit 2
E 100250468 uncharacterized protein LOC100250468 isoform X1 K03504 POLD3; DNA polymerase delta subunit 3
E 100263057 uncharacterized protein LOC100263057 K03505 POLD4; DNA polymerase delta subunit 4
D RPA (replication factor A)
E 100263039 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 100268119 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 100255412 replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 100254758 replication protein A 32 kDa subunit B isoform X2 K10739 RFA2; replication factor A2
E 100245725 replication protein A 32 kDa subunit A K10739 RFA2; replication factor A2
E 100264936 replication protein A 14 kDa subunit B K10740 RPA3; replication factor A3
E 100244193 replication protein A 14 kDa subunit B K10740 RPA3; replication factor A3
D RFC (replication factor C)
E 100249625 replication factor C subunit 1 K10754 RFC1; replication factor C subunit 1
E 100245502 replication factor C subunit 4 K10755 RFC2_4; replication factor C subunit 2/4
E 100246202 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
E 100247946 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
E 100266082 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
E 100265748 uncharacterized protein LOC100265748 K10756 RFC3_5; replication factor C subunit 3/5
E 104882319 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
E 100852980 uncharacterized protein LOC100852980 isoform X1 K10756 RFC3_5; replication factor C subunit 3/5
D Other MMR factors
E 100260468 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 100248466 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 100245156 exonuclease 1 K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E 100262876 exonuclease 1 isoform X1 K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E 100256907 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E 100246513 uncharacterized protein LOC100246513 K24755 WDR76; WD repeat-containing protein 76
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
E 100252167 double-strand break repair protein MRE11 isoform X2 K10865 MRE11; double-strand break repair protein MRE11
E 100243413 DNA repair protein RAD50 isoform X1 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
E 100853048 nibrin homolog isoform X1 K10867 NBN; nibrin
D BRCA1-core complex
E 100256563 protein BREAST CANCER SUSCEPTIBILITY 1 homolog K10683 BARD1; BRCA1-associated RING domain protein 1
E 100253255 BRCA1-associated RING domain protein 1 isoform X1 K10683 BARD1; BRCA1-associated RING domain protein 1
D BRCA1-A complex
E 100260976 uncharacterized protein LOC100260976 K20776 BABAM; BRISC and BRCA1-A complex member 1
E 100264259 uncharacterized protein LOC100264259 K12173 BRE; BRCA1-A complex subunit BRE
E 100253140 uncharacterized protein LOC100253140 K11864 BRCC3; BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
D BRCA1-B complex
E 100251396 uncharacterized protein LOC100251396 K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
E 100257310 BRCT domain-containing protein At4g02110 K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
E 100260958 uncharacterized protein LOC100260958 isoform X1 K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
D BRCA1-C complex
E 100252167 double-strand break repair protein MRE11 isoform X2 K10865 MRE11; double-strand break repair protein MRE11
E 100243413 DNA repair protein RAD50 isoform X1 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
E 100853048 nibrin homolog isoform X1 K10867 NBN; nibrin
D BRCA complex
E 100241398 protein BREAST CANCER SUSCEPTIBILITY 2 homolog B isoform X2 K08775 BRCA2; breast cancer 2 susceptibility protein
E 100252629 DNA repair protein RAD51 homolog K04482 RAD51; DNA repair protein RAD51
D RecA family proteins
E 100252629 DNA repair protein RAD51 homolog K04482 RAD51; DNA repair protein RAD51
E 100250095 DNA repair protein RAD51 homolog 2 isoform X2 K10869 RAD51L1; RAD51-like protein 1
E 100267711 DNA repair protein RAD51 homolog 3 K10870 RAD51L2; RAD51-like protein 2
E 100257115 DNA repair protein RAD51 homolog 4 K10871 RAD51L3; RAD51-like protein 3
E 100262890 DNA repair protein XRCC2 homolog isoform X2 K10879 XRCC2; DNA-repair protein XRCC2
E 100251380 DNA repair protein XRCC3 homolog K10880 XRCC3; DNA-repair protein XRCC3
D Rad52 family proteins
E 100261996 DNA repair RAD52-like protein 1, mitochondrial K26556 RAD52-1; DNA repair RAD52-like protein 1, mitochondrial
E 100260946 DNA repair RAD52-like protein 2, chloroplastic K26558 RAD52-2; DNA repair RAD52-like protein 2, chloroplastic
D Rad54 family proteins
E 100267731 SNF2 domain-containing protein CLASSY 3 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 100260281 protein CHROMATIN REMODELING 35 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 100248561 protein CHROMATIN REMODELING 35 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 100250037 SNF2 domain-containing protein CLASSY 1 isoform X2 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 100246859 protein CHROMATIN REMODELING 25 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
D RecQ family DNA helicases
E 100256266 ATP-dependent DNA helicase Q-like 2 K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
E 100252922 ATP-dependent DNA helicase Q-like 1 K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
E 100257897 ATP-dependent DNA helicase Q-like SIM isoform X2 K10900 WRN; werner syndrome ATP-dependent helicase [EC:5.6.2.4]
E 100245652 ATP-dependent DNA helicase Q-like 4A isoform X1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 100242171 ATP-dependent DNA helicase Q-like 3 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 100256355 ATP-dependent DNA helicase Q-like 5 K10730 RECQL4; ATP-dependent DNA helicase Q4 [EC:5.6.2.4]
D Bloom's syndrome complex (BTR)
E 100245652 ATP-dependent DNA helicase Q-like 4A isoform X1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 100242171 ATP-dependent DNA helicase Q-like 3 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 100248256 DNA topoisomerase 3-alpha isoform X3 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 100260076 DNA topoisomerase 3-beta isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 100244067 RecQ-mediated genome instability protein 1 K10990 RMI1; RecQ-mediated genome instability protein 1
E 100265374 uncharacterized protein LOC100265374 isoform X2 K15365 RMI2; RecQ-mediated genome instability protein 2
D RPA (replication factor A)
E 100263039 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 100268119 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 100255412 replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 100254758 replication protein A 32 kDa subunit B isoform X2 K10739 RFA2; replication factor A2
E 100245725 replication protein A 32 kDa subunit A K10739 RFA2; replication factor A2
E 100264936 replication protein A 14 kDa subunit B K10740 RPA3; replication factor A3
E 100244193 replication protein A 14 kDa subunit B K10740 RPA3; replication factor A3
D Protein phosphatase 4
E 100245244 serine/threonine-protein phosphatase PP-X isozyme 2 isoform X2 K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16]
E 100242589 uncharacterized protein LOC100242589 K15425 PPP4R2; serine/threonine-protein phosphatase 4 regulatory subunit 2
E 100241492 uncharacterized protein LOC100241492 isoform X2 K17491 SMEK; protein phosphatase 4 regulatory subunit 3
D AP-5 complex
E 100249600 uncharacterized protein LOC100249600 K19022 AP5B1; AP-5 complex subunit beta-1
E 100259662 AP-5 complex subunit mu isoform X2 K19023 AP5M1; AP-5 complex subunit mu-1
E 100248758 uncharacterized protein LOC100248758 K19025 AP5Z1; AP-5 complex subunit zeta-1
D SMC5-SMC6 complex
E 100249983 structural maintenance of chromosomes protein 5 K22803 SMC5; structural maintenance of chromosomes protein 5
E 100249449 structural maintenance of chromosomes protein 6B isoform X1 K22804 SMC6; structural maintenance of chromosomes protein 6
E 100259925 uncharacterized protein LOC100259925 K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27]
E 100253746 E3 SUMO-protein ligase MMS21 K22756 NSMCE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-]
E 100255522 non-structural maintenance of chromosomes element 4 homolog A K22825 NSMCE4; non-structural maintenance of chromosomes element 4
E 100258687 non-structural maintenance of chromosomes element 4 homolog A K22825 NSMCE4; non-structural maintenance of chromosomes element 4
D Other HR factors
E 100254360 crossover junction endonuclease EME1B isoform X2 K10882 EME1; crossover junction endonuclease EME1 [EC:3.1.22.-]
E 100265347 crossover junction endonuclease MUS81 isoform X1 K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-]
E 100267214 protein DELETION OF SUV3 SUPPRESSOR 1(I) K10881 SHFM1; 26 proteasome complex subunit DSS1
E 100250139 uncharacterized protein LOC100250139 K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E 109121452 structure-specific endonuclease subunit slx1 K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E 100256642 single-strand DNA endonuclease 1 K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E 100259113 flap endonuclease GEN-like 1 K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E 100247348 uncharacterized protein LOC100247348 isoform X1 K19026 SPG11; spatacsin
E 100262933 uncharacterized protein LOC100262933 isoform X1 K19027 ZFYVE26; zinc finger FYVE domain-containing protein 26
E 100242251 protein MRG1 isoform X3 K11339 MORF4L1; mortality factor 4-like protein 1
E 100266105 protein MRG1 isoform X4 K11339 MORF4L1; mortality factor 4-like protein 1
E 100245722 uncharacterized protein LOC100245722 K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
E 100267261 uncharacterized protein LOC100267261 isoform X1 K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
E 100256552 ATPase family AAA domain-containing protein FIGL1 K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-]
E 100259392 uncharacterized protein LOC100259392 isoform X2 K25770 ZSWIM7; zinc finger SWIM domain-containing protein 7
E 100264183 LOW QUALITY PROTEIN: 3'-5' exonuclease K22807 WRNexo; werner syndrome-like exonuclease [EC:3.1.11.-]
E 100260002 DNA-dependent metalloprotease WSS1 K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E 100253653 single-stranded DNA-binding protein WHY1, chloroplastic K26559 WHY1; single-stranded DNA-binding protein WHY1
E 100258449 single-stranded DNA-binding protein WHY2, mitochondrial K26561 WHY2; single-stranded DNA-binding protein WHY2
C NHEJ (non-homologous end-joining)
D DNA-PK complex
E 100265198 ATP-dependent DNA helicase 2 subunit KU70 isoform X1 K10884 XRCC6; ATP-dependent DNA helicase 2 subunit 1
E 100250596 ATP-dependent DNA helicase 2 subunit KU80 isoform X2 K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2
E 100255780 ATP-dependent DNA helicase 2 subunit KU80 isoform X2 K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2
D MRX complex
E 100252167 double-strand break repair protein MRE11 isoform X2 K10865 MRE11; double-strand break repair protein MRE11
E 100243413 DNA repair protein RAD50 isoform X1 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D DNA Ligase 4 complex
E 100258105 DNA ligase 4 K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
E 100252901 DNA repair protein XRCC4 isoform X1 K10886 XRCC4; DNA-repair protein XRCC4
D X-family DNA polymerases
E 100248348 DNA polymerase lambda isoform X1 K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
D Other NHEJ factors
E 100259037 transcription factor bHLH140 isoform X1 K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E 100255468 uncharacterized protein LOC100255468 K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
E 100252197 structural maintenance of chromosomes flexible hinge domain-containing protein GMI1 isoform X2 K23113 SMCHD1; structural maintenance of chromosomes flexible hinge domain-containing protein 1
C FA (Fanconi anemia) pathway
D FA core complex
E 104878371 uncharacterized protein LOC104878371 isoform X2 K10606 FANCL; E3 ubiquitin-protein ligase FANCL [EC:2.3.2.27]
E 100254868 DEAD-box ATP-dependent RNA helicase FANCM K10896 FANCM; fanconi anemia group M protein
D FA core complex binding factors
E 100257797 protein MHF1 homolog isoform X1 K11511 APITD1; centromere protein S
E 100253596 protein MHF2 homolog isoform X1 K15360 STRA13; centromere protein X
E 100245756 uncharacterized protein LOC100245756 isoform X1 K13960 UBE2T; ubiquitin-conjugating enzyme E2 T [EC:2.3.2.23]
D Bloom's syndrome complex (BTR)
E 100245652 ATP-dependent DNA helicase Q-like 4A isoform X1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 100242171 ATP-dependent DNA helicase Q-like 3 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 100248256 DNA topoisomerase 3-alpha isoform X3 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 100260076 DNA topoisomerase 3-beta isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 100244067 RecQ-mediated genome instability protein 1 K10990 RMI1; RecQ-mediated genome instability protein 1
E 100265374 uncharacterized protein LOC100265374 isoform X2 K15365 RMI2; RecQ-mediated genome instability protein 2
D FANCD2-I complex
E 100248975 uncharacterized protein LOC100248975 isoform X1 K10891 FANCD2; fanconi anemia group D2 protein
E 100260122 uncharacterized protein LOC100260122 isoform X2 K10895 FANCI; fanconi anemia group I protein
D Downstream FA components
E 100241398 protein BREAST CANCER SUSCEPTIBILITY 2 homolog B isoform X2 K08775 BRCA2; breast cancer 2 susceptibility protein
E 100251396 uncharacterized protein LOC100251396 K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
D Other FA pathway factors
E 100261742 fanconi-associated nuclease 1 homolog isoform X2 K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E 100252629 DNA repair protein RAD51 homolog K04482 RAD51; DNA repair protein RAD51
E 100267711 DNA repair protein RAD51 homolog 3 K10870 RAD51L2; RAD51-like protein 2
E 100256409 uncharacterized protein LOC100256409 isoform X1 K11137 TELO2; telomere length regulation protein
E 100248769 uncharacterized protein LOC100248769 isoform X2 K15361 WDR48; WD repeat-containing protein 48
C Other DSBR factors
D Protein phosphatase 6
E 100852922 phytochrome-associated serine/threonine-protein phosphatase K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit [EC:3.1.3.16]
E 100260305 uncharacterized protein LOC100260305 isoform X4 K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
E 100243011 uncharacterized protein LOC100243011 isoform X1 K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
D Ubiquitin ligases
D Others
E 100267300 uncharacterized protein LOC100267300 isoform X1 K23314 WRAP53; telomerase Cajal body protein 1
E 100256585 uncharacterized protein LOC100256585 K24752 WDR70; WD repeat-containing protein 70
E 100246513 uncharacterized protein LOC100246513 K24755 WDR76; WD repeat-containing protein 76
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D 100266192 DNA polymerase eta isoform X1 K03509 POLH; DNA polymerase eta [EC:2.7.7.7]
D 100253205 DNA polymerase kappa isoform X1 K03511 POLK; DNA polymerase kappa [EC:2.7.7.7]
D 100247553 DNA repair protein REV1 isoform X2 K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-]
C B-family DNA polymerases
D 100263126 DNA polymerase zeta catalytic subunit isoform X1 K02350 REV3L; DNA polymerase zeta [EC:2.7.7.7]
C A-family DNA polymerase
C Rad6 epistasis group
D 100265550 UBC2; ubiquitin-conjugating enzyme E2 2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 100246805 ubiquitin-conjugating enzyme E2 2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 100242801 ubiquitin-conjugating enzyme E2 2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 100261243 ubiquitin-conjugating enzyme E2 2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 100264745 DNA repair protein RAD5B K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D 100246473 DNA repair protein RAD5A isoform X1 K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D 100263696 putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 K15711 SMARCA3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
D 100264453 ubiquitin-conjugating enzyme E2 variant 1A isoform X2 K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 100248369 ubiquitin-conjugating enzyme E2 variant 1D K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 100244148 ubiquitin-conjugating enzyme E2 variant 1D isoform X1 K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 100254005 ubiquitin-conjugating enzyme E2 36 K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
D 100255523 ubiquitin-conjugating enzyme E2 36 K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
C Other TLS factors
D 100260468 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
D 100248466 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
B Check point factors
C Rad9-Hus1-Rad1 complex
D 100264904 uncharacterized protein LOC100264904 isoform X2 K10994 RAD9A; cell cycle checkpoint control protein RAD9A [EC:3.1.11.2]
D 100266426 uncharacterized protein LOC100266426 K10903 HUS1; HUS1 checkpoint protein
D 100256584 uncharacterized protein LOC100256584 K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
D 100255740 uncharacterized protein LOC100255740 isoform X1 K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C HRAD17(Rad24)-RFC complex
D 100255852 cell cycle checkpoint protein RAD17 isoform X1 K06662 HRAD17; cell cycle checkpoint protein
D 100245502 replication factor C subunit 4 K10755 RFC2_4; replication factor C subunit 2/4
D 100246202 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
D 100247946 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
D 100266082 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
D 100265748 uncharacterized protein LOC100265748 K10756 RFC3_5; replication factor C subunit 3/5
D 104882319 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
D 100852980 uncharacterized protein LOC100852980 isoform X1 K10756 RFC3_5; replication factor C subunit 3/5
C Rad17-Mec3-Ddc1 complex
D 100256584 uncharacterized protein LOC100256584 K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
D 100255740 uncharacterized protein LOC100255740 isoform X1 K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C FPC (fork protection complex)
D 100246656 uncharacterized protein LOC100246656 K10997 TIMELESS; replication fork protection complex subunit TIMELESS/Tof1/Swi1
D 100240999 uncharacterized protein LOC100240999 isoform X1 K10998 TIPIN; replication fork protection complex subunit TIPIN/Csm3/Swi3
C Triple T complex
D 100256409 uncharacterized protein LOC100256409 isoform X1 K11137 TELO2; telomere length regulation protein
D 100246156 uncharacterized protein LOC100246156 isoform X1 K20403 TTI1; TELO2-interacting protein 1
D 100261631 uncharacterized protein At2g39910 isoform X2 K23115 TTI2; TELO2-interacting protein 2
C BAG6-UBL4A-GET4 complex
D 100260199 ubiquitin-like domain-containing protein CIP73 isoform X4 K23390 BAG6; large proline-rich protein BAG6
D 100258222 protein GET4 K23387 GET4; golgi to ER traffic protein 4
C Other check point factors
D 100245131 serine/threonine-protein kinase ATR isoform X1 K06640 ATR; serine/threonine-protein kinase ATR [EC:2.7.11.1]
D 100250198 serine/threonine-protein kinase ATM isoform X1 K04728 ATM; serine-protein kinase ATM [EC:2.7.11.1]
D 100259987 14-3-3-like protein A K06630 YWHAE; 14-3-3 protein epsilon
D 100250873 14-3-3-like protein G-BOX factor 14 kappa K06630 YWHAE; 14-3-3 protein epsilon
D 100248875 14-3-3 protein 9 K06630 YWHAE; 14-3-3 protein epsilon
D 100250345 14-3-3-like protein D K06630 YWHAE; 14-3-3 protein epsilon
D 100264912 14-3-3-like protein isoform X2 K06630 YWHAE; 14-3-3 protein epsilon
D 100257548 14-3-3 protein K06630 YWHAE; 14-3-3 protein epsilon
D 100247183 14-3-3 protein 7 isoform X2 K06630 YWHAE; 14-3-3 protein epsilon
D 100244643 14-3-3-like protein D isoform X2 K06630 YWHAE; 14-3-3 protein epsilon
D 100254211 14-3-3-like protein GF14 iota K06630 YWHAE; 14-3-3 protein epsilon
D 100247725 wee1-like protein kinase isoform X1 K06632 WEE1; wee1-like protein kinase [EC:2.7.11.1]
D 100266667 uncharacterized protein LOC100266667 isoform X1 K20780 MDC1; mediator of DNA damage checkpoint protein 1
D 100241803 serine/threonine-protein kinase Nek2 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 100246952 serine/threonine-protein kinase Nek6 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 100246807 serine/threonine-protein kinase Nek6 isoform X1 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 100258125 serine/threonine-protein kinase Nek5 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 100852976 serine/threonine-protein kinase Nek2 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 100257121 uncharacterized protein LOC100257121 K22422 DONSON; protein downstream neighbor of Son
D 100245124 uncharacterized protein LOC100245124 K22422 DONSON; protein downstream neighbor of Son
D 100243069 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 isoform X1 K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 100242617 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 isoform X2 K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 100255081 uncharacterized protein LOC100255081 K25059 SDE2; replication stress response regulator SDE2
D 100252237 protein DECREASED SIZE EXCLUSION LIMIT 1 isoform X4 K24770 DSE1; protein decreased size exclusion limit 1
B Other factors with a suspected DNA repair function
C DNA polymerases
D 100264582 helicase and polymerase-containing protein TEBICHI isoform X1 K02349 POLQ; DNA polymerase theta [EC:2.7.7.7]
D 100268096 rDNA transcriptional regulator pol5 K02331 POL5; DNA polymerase phi [EC:2.7.7.7]
D 100257712 uncharacterized protein LOC100257712 isoform X1 K22761 PRIMPOL; DNA-directed primase/polymerase protein [EC:2.7.7.102 2.7.7.7]
C Nucleases
D 100256089 uncharacterized protein LOC100256089 isoform X1 K15340 DCLRE1A; DNA cross-link repair 1A protein
D 100254013 uncharacterized protein LOC100254013 K15340 DCLRE1A; DNA cross-link repair 1A protein
D 100263032 uncharacterized protein LOC100263032 K15341 DCLRE1B; DNA cross-link repair 1B protein [EC:3.1.-.-]
D 100244936 exonuclease V, chloroplastic K17815 EXO5; exonuclease V [EC:3.1.-.-]
D 100249201 uncharacterized protein LOC100249201 isoform X1 K21813 ENDOV; endonuclease V [EC:3.1.26.-]
D 100267344 uncharacterized protein LOC100267344 isoform X1 K25861 ZRANB3; DNA annealing helicase and endonuclease ZRANB3 [EC:5.6.2.- 3.1.-.-]
D 100243458 endonuclease 1 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D 100265776 endonuclease 4 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D 100266396 endonuclease 2 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
C Helicases
D 100259230 switch 2 K20098 ERCC6L2; DNA excision repair protein ERCC-6-like 2 [EC:5.6.2.-]
C PSO4 complex
D 100249408 pre-mRNA-processing factor 19 isoform X2 K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D 100243262 cell division cycle 5-like protein K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D 100254130 pre-mRNA-splicing factor SPF27 homolog K12861 BCAS2; pre-mRNA-splicing factor SPF27
D 100248018 protein pleiotropic regulatory locus 1 K12862 PLRG1; pleiotropic regulator 1
C Modulation of nucleotide pools
D 100250719 nudix hydrolase 1 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 100242070 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 100253119 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 100261117 ribonucleoside-diphosphate reductase large subunit K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D 100267871 ribonucleoside-diphosphate reductase small chain A K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
D 100263189 ribonucleoside-diphosphate reductase small chain A K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
D 100243004 ribonucleoside-diphosphate reductase small chain K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D 100243038 deoxyribodipyrimidine photo-lyase isoform X1 K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E 100253025 uracil-DNA glycosylase, mitochondrial K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E 100243712 alkylbase DNA glycosidase-like protein mag2 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E 100852509 DNA-3-methyladenine glycosylase 1 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E 100252980 DNA-3-methyladenine glycosylase 1 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E 100250307 DNA-3-methyladenine glycosylase isoform X2 K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E 100265491 adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E 100249617 uncharacterized protein LOC100249617 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 100256507 uncharacterized protein LOC100256507 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 100267363 uncharacterized protein LOC100267363 isoform X2 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 100250686 uncharacterized protein LOC100250686 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 100258710 uncharacterized protein LOC100258710 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 100261209 formamidopyrimidine-DNA glycosylase isoform X1 K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E 100257083 putative DNA glycosylase At3g47830 isoform X1 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 100268015 endonuclease III homolog 1, chloroplastic isoform X1 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E 100257338 DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic isoform X2 K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
D DNA ligase
D DNA polymerase I
E 100257153 DNA polymerase I B, chloroplastic/mitochondrial K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E 100257153 DNA polymerase I B, chloroplastic/mitochondrial K02335 polA; DNA polymerase I [EC:2.7.7.7]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F 4025099 rpoB; RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F 132254242 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F 132254431 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F 4025097 rpoC2; RNA polymerase beta'' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F 4025098 rpoC1; RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F 132254244 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F 132254436 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F 4025131 rpoA; RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F 132254428 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E 132254416 uncharacterized protein LOC116803646 K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
D Other MMR factors
E 100258550 single-stranded DNA-binding protein, mitochondrial K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E 100257827 DNA repair protein RecA homolog 3, mitochondrial K03553 recA; recombination protein RecA
E 100249133 DNA repair protein RecA homolog 1, chloroplastic K03553 recA; recombination protein RecA
D RecFOR pathway proteins
E 100257827 DNA repair protein RecA homolog 3, mitochondrial K03553 recA; recombination protein RecA
E 100249133 DNA repair protein RecA homolog 1, chloroplastic K03553 recA; recombination protein RecA
E 100258398 uncharacterized protein LOC100258398 K04485 radA; DNA repair protein RadA/Sms
E 104880300 uncharacterized protein LOC104880300 K04485 radA; DNA repair protein RadA/Sms
E 100252614 ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X2 K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F 100250492 DNA gyrase subunit A, chloroplastic/mitochondrial isoform X1 K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F 100241769 DNA gyrase subunit B, chloroplastic/mitochondrial isoform X2 K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
E Facilitator
E Supressor
F 100262056 uncharacterized protein LOC100262056 K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
D 100257827 DNA repair protein RecA homolog 3, mitochondrial K03553 recA; recombination protein RecA
D 100249133 DNA repair protein RecA homolog 1, chloroplastic K03553 recA; recombination protein RecA
D 100258550 single-stranded DNA-binding protein, mitochondrial K03111 ssb; single-strand DNA-binding protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D 100250719 nudix hydrolase 1 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 100242070 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 100253119 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
C Others
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#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024