+F Repair protein KO
#
DNA Repair and Recombination Proteins - Xanthomonas citri subsp. citri Aw12879
%
!
AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D XCAW_01350 ada; Methylated DNA-protein cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D XCAW_02865 phrB; Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E XCAW_04585 ung; Uracil DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E XCAW_02121 mpg; 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E XCAW_02233 Hypothetical Protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E XCAW_02743 nth; EndoIII-related endonuclease K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
D XCAW_04048 endonuclease K05986 NUCS; nuclease S1 [EC:3.1.30.1]
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D XCAW_01780 mutT; NTP pyrophosphohydrolase including oxidative damage repair enzyme K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D XCAW_03792 thiE; Thiamine monophosphate synthase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D XCAW_00366 dut; dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D XCAW_01350 ada; Methylated DNA-protein cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D XCAW_02865 phrB; Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D XCAW_03015 Deoxyribodipyrimidine photolyase-related protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
C BER (base exicision repair)
D DNA glycosylases
E XCAW_04585 ung; Uracil DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E XCAW_04407 Uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E XCAW_03121 alkA; 3-Methyladenine DNA glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E XCAW_01351 alkA; 3-Methyladenine DNA glycosylase K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E XCAW_02121 mpg; 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E XCAW_02233 Hypothetical Protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E XCAW_03197 tag; 3-Methyladenine DNA glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E XCAW_00388 nei; Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E XCAW_03975 nei; Formamidopyrimidine-DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
E XCAW_02743 nth; EndoIII-related endonuclease K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E XCAW_00126 xthA; Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E XCAW_01794 xthA; Exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E XCAW_00377 xthA; Exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E XCAW_03160 nfi; Deoxyinosine 3'endonuclease (endonuclease V) K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
D RecJ
E XCAW_02534 recJ; Single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E XCAW_02695 lig; NAD-dependent DNA ligase (contains BRCT domain type II) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E XCAW_00189 polA; DNA polymerase I - 3'-5' exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XCAW_03106 uvrA; Excinuclease ATPase subunit K03701 uvrA; excinuclease ABC subunit A
E XCAW_01287 uvrA; Excinuclease ATPase subunit K03701 uvrA; excinuclease ABC subunit A
E XCAW_02650 uvrB; Helicase subunit of the DNA excision repair complex K03702 uvrB; excinuclease ABC subunit B
E XCAW_01729 uvrC; Nuclease subunit of the excinuclease complex K03703 uvrC; excinuclease ABC subunit C
E XCAW_02238 uvrC; Nuclease subunit of the excinuclease complex K05984 cho; excinuclease Cho [EC:3.1.25.-]
E XCAW_00148 uvrD; Superfamily I DNA and RNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E XCAW_00189 polA; DNA polymerase I - 3'-5' exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7]
E XCAW_02695 lig; NAD-dependent DNA ligase (contains BRCT domain type II) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F XCAW_03617 rpoB; DNA-directed RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F XCAW_03616 rpoC; DNA-directed RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F XCAW_03586 rpoA; DNA-directed RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F XCAW_04087 rpoZ; DNA-directed RNA polymerase subunit K K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F XCAW_01314 mfd; Transcription-repair coupling factor - superfamily II helicase K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E XCAW_03047 mutS; MutS-like ATPases involved in mismatch repair, family 2 K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E XCAW_02070 mutL; DNA mismatch repair enzyme (ATPase) K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E XCAW_02726 sbcB; Exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
E XCAW_02076 xseA; Exonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E XCAW_01412 xseB; Exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E XCAW_02938 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E XCAW_00002 dnaN; DNA polymerase sliding clamp subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E XCAW_04257 holC; DNA polymerase III chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E XCAW_01395 holA; DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E XCAW_01232 holB; ATPase involved in DNA replication K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E XCAW_01188 dnaQ; DNA polymerase III epsilon subunit and related 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E XCAW_01208 dnaX; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E XCAW_02695 lig; NAD-dependent DNA ligase (contains BRCT domain type II) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E XCAW_00148 uvrD; Superfamily I DNA and RNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E XCAW_01651 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E XCAW_02453 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E XCAW_03182 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E XCAW_04708 recB; ATP-dependent exoDNAse (exonuclease V) beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
E XCAW_04709 recC; Exonuclease V gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
E XCAW_04707 recD; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E XCAW_02328 recA; Recombinase A K03553 recA; recombination protein RecA
E XCAW_03435 ruvA; Holliday junction resolvasome DNA-binding subunit K03550 ruvA; holliday junction DNA helicase RuvA
E XCAW_03432 ruvB; Holliday junction resolvasome helicase subunit K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E XCAW_03436 ruvC; Holliday junction resolvasome endonuclease subunit K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E XCAW_04578 priA; Primosomal protein N' (replication factor Y) - superfamily II helicase K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E XCAW_02726 sbcB; Exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D RecFOR pathway proteins
E XCAW_02328 recA; Recombinase A K03553 recA; recombination protein RecA
E XCAW_03090 sms; ATP-dependent serine protease K04485 radA; DNA repair protein RadA/Sms
E XCAW_00005 recF; Recombinational DNA repair ATPase (RecF pathway) K03629 recF; DNA replication and repair protein RecF
E XCAW_04083 recG; RecG-like helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E XCAW_02534 recJ; Single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E XCAW_03021 recO; Recombinational DNA repair protein (RecF pathway) K03584 recO; DNA repair protein RecO (recombination protein O)
E XCAW_01210 recR; Recombinational DNA repair protein (RecF pathway) K06187 recR; recombination protein RecR
E XCAW_02809 recN; ATPases involved in DNA repair K03631 recN; DNA repair protein RecN (Recombination protein N)
E XCAW_00072 rdgC; DNA recombination-dependent growth factor C K03554 rdgC; recombination associated protein RdgC
E XCAW_03435 ruvA; Holliday junction resolvasome DNA-binding subunit K03550 ruvA; holliday junction DNA helicase RuvA
E XCAW_03432 ruvB; Holliday junction resolvasome helicase subunit K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E XCAW_03436 ruvC; Holliday junction resolvasome endonuclease subunit K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
E XCAW_04603 Hypothetical Protein K15342 cas1; CRISP-associated protein Cas1
D Archaeal homologous recombinant proteins
E XCAW_01443 Hypothetical Protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
E XCAW_00522 Hypothetical Protein K10979 ku; DNA end-binding protein Ku
E XCAW_02080 cDC9; ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F XCAW_02691 gyrA; DNA gyrase (topoisomerase II) A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F XCAW_00006 gyrB; DNA gyrase (topoisomerase II) B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F XCAW_04567 topA; Topoisomerase IA K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
F XCAW_00419 DNA topoisomerase IB K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F XCAW_01179 himA; Bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F XCAW_02534 recJ; Single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F XCAW_03021 recO; Recombinational DNA repair protein (RecF pathway) K03584 recO; DNA repair protein RecO (recombination protein O)
F XCAW_01210 recR; Recombinational DNA repair protein (RecF pathway) K06187 recR; recombination protein RecR
F XCAW_02695 lig; NAD-dependent DNA ligase (contains BRCT domain type II) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F XCAW_00934 fis; Factor for inversion stimulation Fis, transcriptional activator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
F XCAW_02269 himA; Bacterial nucleoid DNA-binding protein K04764 ihfA; integration host factor subunit alpha
F XCAW_01962 himA; Bacterial nucleoid DNA-binding protein K05788 ihfB; integration host factor subunit beta
E Supressor
F XCAW_02726 sbcB; Exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
F XCAW_03410 recQ; Superfamily II DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F XCAW_03106 uvrA; Excinuclease ATPase subunit K03701 uvrA; excinuclease ABC subunit A
F XCAW_01287 uvrA; Excinuclease ATPase subunit K03701 uvrA; excinuclease ABC subunit A
F XCAW_02650 uvrB; Helicase subunit of the DNA excision repair complex K03702 uvrB; excinuclease ABC subunit B
F XCAW_04268 hns; DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D XCAW_04324 dinP; Polymerase V subunit K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D XCAW_01169 dinP; Polymerase V subunit K03502 umuC; DNA polymerase V
D XCAW_04492 dinP; Polymerase V subunit K03502 umuC; DNA polymerase V
D XCAW_01170 lexA; SOS-response transcriptional repressor (RecA-mediated autopeptidases) K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D XCAW_04491 lexA; SOS-response transcriptional repressors (RecA-mediated autopeptidases) K03503 umuD; DNA polymerase V [EC:3.4.21.-]
C Other SOS response factors
D XCAW_02328 recA; Recombinase A K03553 recA; recombination protein RecA
D XCAW_02329 lexA; SOS-response transcriptional repressors (RecA-mediated autopeptidases) K01356 lexA; repressor LexA [EC:3.4.21.88]
D XCAW_01297 lexA; SOS-response transcriptional repressors (RecA-mediated autopeptidases) K01356 lexA; repressor LexA [EC:3.4.21.88]
D XCAW_02809 recN; ATPases involved in DNA repair K03631 recN; DNA repair protein RecN (Recombination protein N)
D XCAW_01298 Hypothetical Protein K14160 imuA; protein ImuA
D XCAW_01299 dinP; Polymerase V subunit K14161 imuB; protein ImuB
D XCAW_01300 dnaE; DNA polymerase III alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D XCAW_01651 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D XCAW_02453 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D XCAW_03182 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D XCAW_02327 oraA; Hypothetical Protein K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D XCAW_00393 uvrD; Superfamily I DNA and RNA helicase K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D XCAW_01923 uvrD; Superfamily I DNA and RNA helicase K03658 helD; DNA helicase IV [EC:5.6.2.4]
D XCAW_00270 dinG; Rad3-related DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D XCAW_03394 dinG; Rad3-related DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D XCAW_02122 lhr; Lhr-like helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D XCAW_03008 lhr; Lhr-like helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
C Modulation of nucleotide pools
D XCAW_01780 mutT; NTP pyrophosphohydrolase including oxidative damage repair enzyme K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D XCAW_03792 thiE; Thiamine monophosphate synthase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D XCAW_00366 dut; dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D XCAW_00227 nrdA; Ribonucleotide reductase alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D XCAW_00228 nrdF; Ribonucleotide reductase beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024