+D GENES KO
#
KEGG Orthology (KO) - Xanthomonas fragariae
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:xfr00010]
D BER92_11590 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D BER92_13745 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D BER92_10820 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D BER92_03420 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D BER92_01980 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D BER92_16780 fructose-bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D BER92_07225 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D BER92_16890 type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D BER92_16795 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D BER92_13280 gpmA; phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D BER92_08745 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D BER92_16785 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D BER92_11720 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D BER92_17345 pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D BER92_08035 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BER92_15940 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BER92_02985 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D BER92_02455 alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D BER92_18900 hydroxyacid dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D BER92_01150 acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D BER92_05895 galactose mutarotase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D BER92_18405 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D BER92_15585 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D BER92_19070 epimerase K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15]
C 00020 Citrate cycle (TCA cycle) [PATH:xfr00020]
D BER92_03620 citrate (Si)-synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D BER92_09435 aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D BER92_09450 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D BER92_00255 isocitrate dehydrogenase (NADP(+)) K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D BER92_15280 isocitrate dehydrogenase K00030 IDH3; isocitrate dehydrogenase (NAD+) [EC:1.1.1.41]
D BER92_08045 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D BER92_08040 dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D BER92_08035 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BER92_15940 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BER92_03940 succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D BER92_03935 succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D BER92_17475 acetyl-CoA hydrolase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]
D BER92_11560 succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D BER92_11550 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D BER92_11570 succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D BER92_11565 succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D BER92_06630 fumarate hydratase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D BER92_08065 aspA; aspartate ammonia-lyase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D BER92_02190 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D BER92_17345 pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
C 00030 Pentose phosphate pathway [PATH:xfr00030]
D BER92_10820 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D BER92_01775 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D BER92_11585 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D BER92_11595 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31]
D BER92_02870 6-phosphogluconate dehydrogenase (decarboxylating) K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D BER92_18055 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D BER92_16960 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D BER92_04865 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D BER92_03505 ribose 5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D BER92_04690 ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D BER92_18405 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D BER92_15585 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D BER92_05055 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D BER92_11600 phosphogluconate dehydratase K01690 edd; phosphogluconate dehydratase [EC:4.2.1.12]
D BER92_11605 2-dehydro-3-deoxyphosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D BER92_17465 gluconolactonase K01053 gnl; gluconolactonase [EC:3.1.1.17]
D BER92_04810 gluconolactonase K01053 gnl; gluconolactonase [EC:3.1.1.17]
D BER92_08585 D-glycerate dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D BER92_01080 gluconokinase K00851 idnK; gluconokinase [EC:2.7.1.12]
D BER92_16780 fructose-bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D BER92_01980 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D BER92_03420 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
C 00040 Pentose and glucuronate interconversions [PATH:xfr00040]
D BER92_11955 pectate lyase K01728 pel; pectate lyase [EC:4.2.2.2]
D BER92_18755 5-dehydro-4-deoxy-D-glucuronate isomerase K01815 kduI; 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [EC:5.3.1.17]
D BER92_18750 2-deoxy-D-gluconate 3-dehydrogenase K00065 kduD; 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase [EC:1.1.1.127]
D BER92_02770 endopolygalacturonase K01184 E3.2.1.15; polygalacturonase [EC:3.2.1.15]
D BER92_11960 polygalacturonase K01184 E3.2.1.15; polygalacturonase [EC:3.2.1.15]
D BER92_08140 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D BER92_09040 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D BER92_18055 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D BER92_10870 xylulokinase K00854 xylB; xylulokinase [EC:2.7.1.17]
D BER92_10865 xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D BER92_06225 ketoglutarate semialdehyde dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26]
C 00051 Fructose and mannose metabolism [PATH:xfr00051]
D BER92_08170 fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D BER92_15590 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D BER92_18405 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D BER92_15585 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D BER92_15655 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D BER92_18800 L-fucose dehydrogenase K00064 E1.1.1.122; D-threo-aldose 1-dehydrogenase [EC:1.1.1.122]
D BER92_01140 oxidoreductase K00064 E1.1.1.122; D-threo-aldose 1-dehydrogenase [EC:1.1.1.122]
D BER92_01135 amidohydrolase K07046 E3.1.1.120; L-fucono-1,5-lactonase [EC:3.1.1.120]
D BER92_01120 fuconate dehydratase K18334 fucD; L-fuconate dehydratase [EC:4.2.1.68]
D BER92_01130 NAD(P)-dependent oxidoreductase K18335 E1.1.1.434; 2-dehydro-3-deoxy-L-fuconate 4-dehydrogenase [EC:1.1.1.434]
D BER92_01125 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase K18336 lra6; 2,4-didehydro-3-deoxy-L-rhamnonate hydrolase [EC:3.7.1.26]
D BER92_03420 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D BER92_01980 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D BER92_12555 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D BER92_10865 xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D BER92_16780 fructose-bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D BER92_07225 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D BER92_15650 GDP-mannose 4,6 dehydratase K22252 tld; GDP-6-deoxy-D-talose 4-dehydrogenase [EC:1.1.1.135]
D BER92_12560 PTS fructose transporter subunit IIBC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D BER92_13695 PTS fructose IIA subunit family protein K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
C 00052 Galactose metabolism [PATH:xfr00052]
D BER92_05895 galactose mutarotase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D BER92_17180 UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D BER92_09040 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D BER92_18405 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D BER92_15585 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D BER92_11590 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D BER92_13745 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D BER92_15410 beta-galactosidase K12308 bgaB; beta-galactosidase [EC:3.2.1.23]
D BER92_17190 UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D BER92_03420 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D BER92_04515 D-galactose 1-dehydrogenase K00035 gal; D-galactose 1-dehydrogenase [EC:1.1.1.48]
D BER92_10935 galactonate dehydratase K01684 dgoD; galactonate dehydratase [EC:4.2.1.6]
D BER92_10945 MFS transporter K00883 dgoK; 2-dehydro-3-deoxygalactonokinase [EC:2.7.1.58]
D BER92_10930 2-dehydro-3-deoxy-6-phosphogalactonate aldolase K01631 dgoA; 2-dehydro-3-deoxyphosphogalactonate aldolase [EC:4.1.2.21]
C 00053 Ascorbate and aldarate metabolism [PATH:xfr00053]
D BER92_08140 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D BER92_17465 gluconolactonase K01053 gnl; gluconolactonase [EC:3.1.1.17]
D BER92_04810 gluconolactonase K01053 gnl; gluconolactonase [EC:3.1.1.17]
D BER92_18800 L-fucose dehydrogenase K00064 E1.1.1.122; D-threo-aldose 1-dehydrogenase [EC:1.1.1.122]
D BER92_01140 oxidoreductase K00064 E1.1.1.122; D-threo-aldose 1-dehydrogenase [EC:1.1.1.122]
D BER92_18385 protein CapI K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D BER92_10940 regucalcin K13874 araB; L-arabinonolactonase [EC:3.1.1.15]
D BER92_06225 ketoglutarate semialdehyde dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26]
C 00500 Starch and sucrose metabolism [PATH:xfr00500]
D BER92_03140 amylosucrase K05341 E2.4.1.4; amylosucrase [EC:2.4.1.4]
D BER92_09040 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D BER92_18215 beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D BER92_10775 1,4-beta-D-glucan glucohydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D BER92_13775 beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D BER92_18885 cellulase K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D BER92_18895 cellulase K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D BER92_02580 endoglucanase K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D BER92_12630 cellulase K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D BER92_13180 cellulase K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D BER92_17605 starch synthase K00703 glgA; starch synthase [EC:2.4.1.21]
D BER92_17600 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D BER92_18805 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D BER92_18810 maltose alpha-D-glucosyltransferase K05343 treS; maltose alpha-D-glucosyltransferase / alpha-amylase [EC:5.4.99.16 3.2.1.1]
D BER92_17590 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D BER92_18815 alpha-amylase K16147 glgE; starch synthase (maltosyl-transferring) [EC:2.4.99.16]
D BER92_17575 glycogen debranching enzyme GlgX K01214 ISA; isoamylase [EC:3.2.1.68]
D BER92_02320 glycogen debranching enzyme GlgX K01214 ISA; isoamylase [EC:3.2.1.68]
D BER92_17585 malto-oligosyltrehalose synthase K06044 treY; (1->4)-alpha-D-glucan 1-alpha-D-glucosylmutase [EC:5.4.99.15]
D BER92_17595 malto-oligosyltrehalose trehalohydrolase K01236 treZ; maltooligosyltrehalose trehalohydrolase [EC:3.2.1.141]
D BER92_03985 alpha,alpha-trehalose-phosphate synthase (UDP-forming) K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347]
D BER92_03995 trehalose-phosphatase K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12]
D BER92_02540 treA; alpha,alpha-trehalase K01194 TREH; alpha,alpha-trehalase [EC:3.2.1.28]
D BER92_18405 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D BER92_15585 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D BER92_11590 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D BER92_13745 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D BER92_10820 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D BER92_08170 fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:xfr00520]
D BER92_07015 beta-N-acetylhexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D BER92_13765 beta-hexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D BER92_02970 N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D BER92_08170 fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D BER92_02965 iron dicitrate transport regulator FecR K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D BER92_15850 glutamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D BER92_07190 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D BER92_15875 UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D BER92_18330 anhydro-N-acetylmuramic acid kinase K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
D BER92_11970 phosphoglycolate phosphatase K22292 mupP; N-acetyl-D-muramate 6-phosphate phosphatase [EC:3.1.3.105]
D BER92_13575 aminoglycoside phosphotransferase K07102 amgK; N-acetylmuramate 1-kinase [EC:2.7.1.221]
D BER92_13580 mannose-1-phosphate guanylyltransferase K00992 murU; N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase [EC:2.7.7.99]
D BER92_13635 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D BER92_10695 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D BER92_09760 UDP-N-acetyl-D-galactosamine dehydrogenase K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
D BER92_11590 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D BER92_13745 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D BER92_18405 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D BER92_15585 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D BER92_09040 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D BER92_08140 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D BER92_17180 UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D BER92_17190 UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D BER92_18385 protein CapI K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D BER92_13695 PTS fructose IIA subunit family protein K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D BER92_10820 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D BER92_15590 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D BER92_15655 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D BER92_15650 GDP-mannose 4,6 dehydratase K22252 tld; GDP-6-deoxy-D-talose 4-dehydrogenase [EC:1.1.1.135]
C 00620 Pyruvate metabolism [PATH:xfr00620]
D BER92_01150 acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D BER92_17345 pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D BER92_08035 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BER92_15940 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BER92_02455 alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D BER92_02985 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D BER92_18900 hydroxyacid dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D BER92_16785 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D BER92_06355 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D BER92_16260 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D BER92_16270 acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D BER92_07185 acetyl-CoA carboxylase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D BER92_17475 acetyl-CoA hydrolase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]
D BER92_01960 lldD; alpha-hydroxy-acid oxidizing enzyme K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3]
D BER92_02100 pyruvate dehydrogenase K00156 poxB; pyruvate dehydrogenase (quinone) [EC:1.2.5.1]
D BER92_15840 lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D BER92_14165 hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D BER92_08585 D-glycerate dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D BER92_03240 malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D BER92_02190 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D BER92_06630 fumarate hydratase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D BER92_08065 aspA; aspartate ammonia-lyase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D BER92_04560 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D BER92_11720 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D BER92_07085 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D BER92_02050 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D BER92_03320 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:xfr00630]
D BER92_01150 acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D BER92_02190 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D BER92_03620 citrate (Si)-synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D BER92_09435 aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D BER92_09450 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D BER92_07085 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D BER92_02050 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D BER92_03160 beta-ketoacyl-ACP reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D BER92_12090 beta-ketoacyl-ACP reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D BER92_18515 catalase K03781 katE; catalase [EC:1.11.1.6]
D BER92_01390 catalase K03781 katE; catalase [EC:1.11.1.6]
D BER92_15065 catalase HPII K03781 katE; catalase [EC:1.11.1.6]
D BER92_08585 D-glycerate dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D BER92_15785 phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D BER92_16790 HAD family hydrolase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D BER92_18035 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BER92_18590 type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BER92_07515 gamma-glutamylputrescine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BER92_07520 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BER92_04480 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D BER92_15060 glycine dehydrogenase (aminomethyl-transferring) K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D BER92_05695 gcvT; glycine cleavage system protein T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D BER92_08035 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BER92_15940 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BER92_05700 glycine cleavage system protein H K02437 gcvH; glycine cleavage system H protein
D BER92_19270 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D BER92_11605 2-dehydro-3-deoxyphosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D BER92_13145 formate dehydrogenase subunit alpha K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D BER92_16485 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D BER92_08515 N-formylglutamate deformylase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68]
C 00640 Propanoate metabolism [PATH:xfr00640]
D BER92_01150 acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D BER92_00535 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D BER92_00530 2-oxoisovalerate dehydrogenase K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D BER92_00520 branched-chain alpha-keto acid dehydrogenase subunit E2 K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D BER92_08035 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BER92_15940 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BER92_06790 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D BER92_06355 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D BER92_16260 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D BER92_16270 acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D BER92_07185 acetyl-CoA carboxylase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D BER92_03935 succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D BER92_03940 succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D BER92_06760 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D BER92_13935 2-methylcitrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5]
D BER92_13930 Fe/S-dependent 2-methylisocitrate dehydratase AcnD K20455 acnD; 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) [EC:4.2.1.117]
D BER92_13925 putative methylaconitate Delta-isomerase PrpF K09788 prpF; 2-methylaconitate isomerase [EC:5.3.3.-]
D BER92_09450 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D BER92_13940 methylisocitrate lyase K03417 prpB; methylisocitrate lyase [EC:4.1.3.30]
C 00650 Butanoate metabolism [PATH:xfr00650]
D BER92_07085 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D BER92_02050 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D BER92_10105 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D BER92_06790 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D BER92_01940 trans-2-enoyl-CoA reductase K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D BER92_11690 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304]
D BER92_11695 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaE K22881 phaE; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaE
D BER92_12670 esterase K05973 phaZ; poly(3-hydroxybutyrate) depolymerase [EC:3.1.1.75]
D BER92_03160 beta-ketoacyl-ACP reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D BER92_12090 beta-ketoacyl-ACP reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D BER92_11560 succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D BER92_11550 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D BER92_11570 succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D BER92_11565 succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D BER92_07560 succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D BER92_17475 acetyl-CoA hydrolase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]
D BER92_09320 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D BER92_15580 succinyl-CoA--3-ketoacid-CoA transferase K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D BER92_15575 succinyl-CoA--3-ketoacid-CoA transferase K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
D BER92_03335 acetolactate synthase 2 catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D BER92_03330 acetolactate synthase K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:xfr00660]
D BER92_03335 acetolactate synthase 2 catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D BER92_03330 acetolactate synthase K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D BER92_03935 succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D BER92_03940 succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D BER92_03295 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D BER92_03300 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D BER92_03305 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:xfr00562]
D BER92_02295 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3]
D BER92_12005 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D BER92_06760 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D BER92_07225 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:xfr00190]
D BER92_07240 NADH-quinone oxidoreductase subunit A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D BER92_07245 NADH dehydrogenase K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D BER92_07250 NADH-quinone oxidoreductase subunit C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2]
D BER92_07255 NADH dehydrogenase K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2]
D BER92_07260 NADH-quinone oxidoreductase subunit E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D BER92_07265 NADH oxidoreductase (quinone) subunit F K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D BER92_07270 NADH-quinone oxidoreductase subunit G K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D BER92_07275 NADH-quinone oxidoreductase subunit H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D BER92_07280 NADH-quinone oxidoreductase subunit I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D BER92_07285 NADH:ubiquinone oxidoreductase subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D BER92_07290 NADH-quinone oxidoreductase subunit K K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D BER92_07295 NADH-quinone oxidoreductase subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D BER92_07300 NADH-quinone oxidoreductase subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D BER92_07305 NADH-quinone oxidoreductase subunit N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D BER92_11560 succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D BER92_11550 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D BER92_11570 succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D BER92_11565 succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D BER92_06880 ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D BER92_06885 cytochrome B K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D BER92_06890 ubiquinol cytochrome C oxidoreductase K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D BER92_18260 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D BER92_14795 cytochrome o ubiquinol oxidase subunit IV K02300 cyoD; cytochrome o ubiquinol oxidase subunit IV
D BER92_18285 MFS transporter K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9]
D BER92_18295 cytochrome c oxidase subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9]
D BER92_18300 cytochrome c oxidase subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]
D BER92_18290 cytochrome c oxidase assembly protein K02258 COX11; cytochrome c oxidase assembly protein subunit 11
D BER92_18265 cytochrome oxidase assembly protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D BER92_14800 cytochrome o ubiquinol oxidase subunit III K02299 cyoC; cytochrome o ubiquinol oxidase subunit III
D BER92_14805 cytochrome o ubiquinol oxidase subunit I K02298 cyoB; cytochrome o ubiquinol oxidase subunit I [EC:7.1.1.3]
D BER92_14810 ubiquinol oxidase subunit II K02297 cyoA; cytochrome o ubiquinol oxidase subunit II [EC:7.1.1.3]
D BER92_15905 F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D BER92_15895 F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D BER92_15900 F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D BER92_15910 F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D BER92_15890 F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D BER92_15925 F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D BER92_15915 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D BER92_15920 ATP F0F1 synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D BER92_03390 inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D BER92_15315 RNA degradosome polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D BER92_05010 polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms
C 00720 Carbon fixation pathways in prokaryotes
C 00680 Methane metabolism [PATH:xfr00680]
D BER92_02985 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D BER92_02995 S-formylglutathione hydrolase K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12]
D BER92_13145 formate dehydrogenase subunit alpha K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D BER92_04480 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D BER92_08745 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D BER92_04560 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D BER92_02190 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D BER92_16780 fructose-bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D BER92_01980 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D BER92_03420 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D BER92_01150 acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D BER92_11720 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D BER92_13280 gpmA; phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D BER92_00115 3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D BER92_09290 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D BER92_12535 phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00910 Nitrogen metabolism [PATH:xfr00910]
D BER92_05915 2-nitropropane dioxygenase K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16]
D BER92_07590 glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D BER92_18035 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BER92_18590 type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BER92_07515 gamma-glutamylputrescine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BER92_07520 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BER92_18910 glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D BER92_18905 glutamate synthase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D BER92_06635 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
D BER92_08285 carbonate dehydratase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
D BER92_08410 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
D BER92_01785 carbonic anhydrase K01674 cah; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:xfr00920]
D BER92_02260 sulfate transporter subunit K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D BER92_02265 sulfate ABC transporter permease subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D BER92_02270 sulfate ABC transporter permease subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D BER92_02275 sulfate ABC transporter ATP-binding protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D BER92_16710 adenylyl-sulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
D BER92_16715 sulfate adenylyltransferase small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D BER92_05685 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D BER92_16730 phosphoadenosine phosphosulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D BER92_18540 iron-uptake factor K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
D BER92_16720 sulfite reductase [NADPH] flavoprotein, alpha-component K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
D BER92_16725 sulfite reductase subunit beta K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
D BER92_08320 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D BER92_15820 cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D BER92_16770 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D BER92_18030 homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D BER92_08835 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D BER92_05825 homoserine acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D BER92_05830 O-succinylhomoserine (thiol)-lyase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D BER92_06120 acyl-CoA dehydrogenase K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:xfr00061]
D BER92_06355 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D BER92_16260 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D BER92_16270 acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D BER92_07185 acetyl-CoA carboxylase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D BER92_01685 acyl carrier protein K02078 acpP; acyl carrier protein
D BER92_14000 acyl carrier protein K02078 acpP; acyl carrier protein
D BER92_14010 [acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D BER92_17390 malonate decarboxylase subunit epsilon K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D BER92_14015 3-oxoacyl-ACP synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D BER92_01750 beta-ketoacyl-[acyl-carrier-protein] synthase II K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D BER92_15805 beta-ketoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D BER92_13995 beta-ketoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D BER92_01730 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D BER92_14005 fabG; 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D BER92_15800 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D BER92_06380 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D BER92_01940 trans-2-enoyl-CoA reductase K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D BER92_09425 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:xfr00071]
D BER92_07085 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D BER92_02050 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D BER92_10110 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D BER92_06790 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D BER92_10105 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D BER92_05725 fadE; acyl-CoA dehydrogenase K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-]
D BER92_09425 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BER92_02985 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D BER92_02455 alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:xfr00561]
D BER92_19270 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D BER92_18900 hydroxyacid dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D BER92_17755 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D BER92_00400 glycerol-3-phosphate 1-O-acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D BER92_01695 acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D BER92_04610 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
C 00564 Glycerophospholipid metabolism [PATH:xfr00564]
D BER92_02090 glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D BER92_17745 glycerol-3-phosphate dehydrogenase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D BER92_00400 glycerol-3-phosphate 1-O-acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D BER92_01695 acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D BER92_04610 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D BER92_02295 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3]
D BER92_01895 SAM-dependent methyltransferase K00570 pmtA; phosphatidylethanolamine/phosphatidyl-N-methylethanolamine N-methyltransferase [EC:2.1.1.17 2.1.1.71]
D BER92_06410 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D BER92_11700 CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D BER92_15515 CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D BER92_08560 phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D BER92_11475 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D BER92_17965 haloacid dehalogenase K18697 pgpC; phosphatidylglycerophosphatase C [EC:3.1.3.27]
D BER92_00085 cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
D BER92_01220 cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
C 00565 Ether lipid metabolism
D BER92_02295 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3]
C 00600 Sphingolipid metabolism [PATH:xfr00600]
D BER92_13765 beta-hexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism [PATH:xfr00592]
D BER92_10110 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01040 Biosynthesis of unsaturated fatty acids [PATH:xfr01040]
D BER92_12225 delta 9 acyl-lipid fatty acid desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D BER92_01560 acyl-CoA desaturase K22769 desA3; NADPH-dependent stearoyl-CoA 9-desaturase [EC:1.14.19.-]
D BER92_01555 oxidoreductase K22770 K22770; stearoyl-CoA 9-desaturase NADPH oxidoreductase
D BER92_04630 arylesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D BER92_14885 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:xfr00230]
D BER92_04910 DNA mismatch repair protein MutT K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D BER92_05680 ADP compounds hydrolase NudE K08312 nudE; ADP compounds hydrolase [EC:3.6.1.-]
D BER92_18405 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D BER92_15585 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D BER92_05055 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D BER92_15360 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D BER92_16310 phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D BER92_13610 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D BER92_14940 phosphoribosylglycinamide formyltransferase 2 K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21]
D BER92_04335 phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D BER92_13605 phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D BER92_07380 5-(carboxyamino)imidazole ribonucleotide synthase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D BER92_07375 5-(carboxyamino)imidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D BER92_18070 phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D BER92_08060 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D BER92_16305 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D BER92_12035 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D BER92_08365 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D BER92_08775 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D BER92_03960 multi-copper polyphenol oxidoreductase K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D BER92_07020 hypoxanthine-guanine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D BER92_09085 IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D BER92_10095 nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D BER92_03565 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D BER92_14280 aldehyde oxidase K11177 yagR; xanthine dehydrogenase YagR molybdenum-binding subunit [EC:1.17.1.4]
D BER92_14275 FAD-binding molybdopterin dehydrogenase K11178 yagS; xanthine dehydrogenase YagS FAD-binding subunit [EC:1.17.1.4]
D BER92_14270 (2Fe-2S)-binding protein K13483 yagT; xanthine dehydrogenase YagT iron-sulfur-binding subunit
D BER92_18940 GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D BER92_09090 glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D BER92_03580 guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D BER92_01805 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D BER92_01810 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D BER92_03590 bifunctional GTP diphosphokinase/guanosine-3',5'-bis(diphosphate) 3'-diphosphatase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D BER92_15320 exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D BER92_04120 relA; GTP diphosphokinase K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5]
D BER92_07000 CYTH domain protein K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D BER92_13840 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D BER92_02740 sugar kinase K00856 ADK; adenosine kinase [EC:2.7.1.20]
D BER92_07410 LOG family protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
D BER92_03425 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D BER92_05690 nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D BER92_04725 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41]
D BER92_16710 adenylyl-sulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
D BER92_16715 sulfate adenylyltransferase small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
C 00240 Pyrimidine metabolism [PATH:xfr00240]
D BER92_09375 carbamoyl phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D BER92_09360 carbamoyl phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D BER92_13415 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D BER92_11920 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D BER92_10690 dihydroorotate dehydrogenase (quinone) K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D BER92_18355 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D BER92_06425 UMP kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D BER92_10095 nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D BER92_05690 nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D BER92_12765 septum formation protein Maf K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D BER92_07105 metal-dependent hydrolase K07043 upp; UTP pyrophosphatase [EC:3.6.1.-]
D BER92_08735 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D BER92_09005 cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D BER92_08365 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D BER92_08775 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D BER92_12615 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D BER92_07410 LOG family protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
D BER92_02700 tRNA-specific adenosine deaminase K03365 FCY1; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D BER92_12390 dCTP deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D BER92_01805 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D BER92_01810 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D BER92_01375 dTMP kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D BER92_18410 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D BER92_00335 thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21]
D BER92_04710 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D BER92_17440 malonic semialdehyde reductase K09019 rutE; 3-hydroxypropanoate dehydrogenase [EC:1.1.1.-]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:xfr00250]
D BER92_04980 asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D BER92_06500 asnB; asparagine synthase B K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D BER92_06700 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D BER92_08895 carbon-nitrogen hydrolase K13566 NIT2; omega-amidase [EC:3.5.1.3]
D BER92_03095 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D BER92_11885 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D BER92_11860 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D BER92_13840 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D BER92_08060 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D BER92_13415 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D BER92_07560 succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D BER92_18910 glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D BER92_18905 glutamate synthase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D BER92_07590 glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D BER92_18315 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D BER92_18035 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BER92_18590 type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BER92_07515 gamma-glutamylputrescine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BER92_07520 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BER92_09375 carbamoyl phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D BER92_09360 carbamoyl phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D BER92_02965 iron dicitrate transport regulator FecR K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D BER92_15850 glutamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D BER92_15360 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:xfr00260]
D BER92_10610 bifunctional aspartate kinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D BER92_13390 diaminopimelate decarboxylase K12526 lysAC; bifunctional diaminopimelate decarboxylase / aspartate kinase [EC:4.1.1.20 2.7.2.4]
D BER92_08590 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D BER92_05835 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D BER92_10605 homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D BER92_10585 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D BER92_04480 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D BER92_08585 D-glycerate dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D BER92_19270 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D BER92_13280 gpmA; phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D BER92_00115 3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D BER92_09290 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D BER92_12535 phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D BER92_02255 glycine C-acetyltransferase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D BER92_02285 L-threonine 3-dehydrogenase K00060 tdh; threonine 3-dehydrogenase [EC:1.1.1.103]
D BER92_15060 glycine dehydrogenase (aminomethyl-transferring) K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D BER92_05695 gcvT; glycine cleavage system protein T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D BER92_08035 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BER92_15940 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BER92_05700 glycine cleavage system protein H K02437 gcvH; glycine cleavage system H protein
D BER92_11700 CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D BER92_15515 CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D BER92_15700 cystathionine beta-synthase K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22]
D BER92_15695 cystathionine beta-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D BER92_17705 serine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D BER92_03325 serine/threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D BER92_07180 tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D BER92_07175 tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:xfr00270]
D BER92_15820 cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D BER92_16770 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D BER92_15695 cystathionine beta-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D BER92_15700 cystathionine beta-synthase K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22]
D BER92_12175 homocysteine S-methyltransferase K00547 mmuM; homocysteine S-methyltransferase [EC:2.1.1.10]
D BER92_08180 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D BER92_08185 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D BER92_16410 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D BER92_04580 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D BER92_17955 S-adenosylmethionine decarboxylase K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D BER92_01615 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D BER92_03960 multi-copper polyphenol oxidoreductase K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D BER92_11980 N-ethylammeline chlorohydrolase K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28]
D BER92_07025 5'-methylthioadenosine phosphorylase K19696 mtiP; 5'-methylthioinosine phosphorylase [EC:2.4.2.44]
D BER92_08490 S-methyl-5-thioribose-1-phosphate isomerase K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23]
D BER92_09270 methylthioribulose-1-phosphate dehydratase K08964 mtnB; methylthioribulose-1-phosphate dehydratase [EC:4.2.1.109]
D BER92_09260 2,3-diketo-5-methylthio-1-phosphopentane phosphatase K09880 mtnC; enolase-phosphatase E1 [EC:3.1.3.77]
D BER92_09265 acireductone dioxygenase K08967 mtnD; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [EC:1.13.11.53 1.13.11.54]
D BER92_01975 aromatic amino acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D BER92_15760 diguanylate cyclase K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14]
D BER92_04550 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D BER92_10610 bifunctional aspartate kinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D BER92_13390 diaminopimelate decarboxylase K12526 lysAC; bifunctional diaminopimelate decarboxylase / aspartate kinase [EC:4.1.1.20 2.7.2.4]
D BER92_08590 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D BER92_05835 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D BER92_18030 homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D BER92_08835 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D BER92_05825 homoserine acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D BER92_05830 O-succinylhomoserine (thiol)-lyase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D BER92_18010 O-acetylhomoserine aminocarboxypropyltransferase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D BER92_04955 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D BER92_02425 glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D BER92_04160 glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D BER92_08320 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D BER92_02190 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D BER92_00115 3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D BER92_09290 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D BER92_12535 phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:xfr00280]
D BER92_04955 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D BER92_07095 leucine dehydrogenase K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9]
D BER92_00535 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D BER92_00530 2-oxoisovalerate dehydrogenase K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D BER92_00520 branched-chain alpha-keto acid dehydrogenase subunit E2 K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D BER92_08035 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BER92_15940 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BER92_16630 isovaleryl-CoA dehydrogenase K00253 IVD; isovaleryl-CoA dehydrogenase [EC:1.3.8.4]
D BER92_06790 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D BER92_10110 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D BER92_06780 3-hydroxyisobutyrate dehydrogenase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
D BER92_06760 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D BER92_16640 3-methylcrotonyl-CoA carboxylase K01968 MCCC1; 3-methylcrotonyl-CoA carboxylase alpha subunit [EC:6.4.1.4]
D BER92_16635 methylcrotonoyl-CoA carboxylase K01969 MCCC2; 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4]
D BER92_09325 enoyl-CoA hydratase K13766 liuC; methylglutaconyl-CoA hydratase [EC:4.2.1.18]
D BER92_09320 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D BER92_15580 succinyl-CoA--3-ketoacid-CoA transferase K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D BER92_15575 succinyl-CoA--3-ketoacid-CoA transferase K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
D BER92_07085 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D BER92_02050 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:xfr00290]
D BER92_17705 serine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D BER92_03325 serine/threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D BER92_03295 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D BER92_03300 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D BER92_03305 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D BER92_03335 acetolactate synthase 2 catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D BER92_03330 acetolactate synthase K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D BER92_03340 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D BER92_16430 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D BER92_04955 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D BER92_07095 leucine dehydrogenase K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9]
D BER92_03095 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D BER92_03320 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:xfr00300]
D BER92_05835 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D BER92_10610 bifunctional aspartate kinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D BER92_13390 diaminopimelate decarboxylase K12526 lysAC; bifunctional diaminopimelate decarboxylase / aspartate kinase [EC:4.1.1.20 2.7.2.4]
D BER92_08590 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D BER92_10960 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D BER92_09355 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D BER92_06485 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D BER92_03475 acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D BER92_06495 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D BER92_02670 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D BER92_15145 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D BER92_03755 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D BER92_03760 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:xfr00310]
D BER92_10675 aldehyde dehydrogenase K26061 amaB; L-aminoadipate-semialdehyde dehydrogenase
D BER92_08040 dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D BER92_08035 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BER92_15940 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BER92_06790 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D BER92_07085 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D BER92_02050 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D BER92_07560 succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D BER92_00315 DUF1338 domain-containing protein K25986 ydcJ; 2-oxoadipate dioxygenase/decarboxylase [EC:1.13.11.93]
C 00220 Arginine biosynthesis [PATH:xfr00220]
D BER92_11890 acetylornithine carbamoyltransferase K09065 argF; N-acetylornithine carbamoyltransferase [EC:2.1.3.9]
D BER92_11885 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D BER92_11860 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D BER92_01350 arginase K01476 rocF; arginase [EC:3.5.3.1]
D BER92_18035 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BER92_18590 type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BER92_07515 gamma-glutamylputrescine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BER92_07520 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BER92_07590 glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D BER92_03095 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D BER92_11875 acetylglutamate kinase K22478 K22478; bifunctional N-acetylglutamate synthase/kinase [EC:2.3.1.1 2.7.2.8]
D BER92_11865 N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D BER92_03475 acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D BER92_11880 acetylornithine deacetylase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16]
C 00330 Arginine and proline metabolism [PATH:xfr00330]
D BER92_02700 tRNA-specific adenosine deaminase K03365 FCY1; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D BER92_01620 arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19]
D BER92_08990 acyltransferase K12251 aguB; N-carbamoylputrescine amidase [EC:3.5.1.53]
D BER92_01615 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D BER92_17955 S-adenosylmethionine decarboxylase K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D BER92_07510 FAD-dependent oxidoreductase K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-]
D BER92_01350 arginase K01476 rocF; arginase [EC:3.5.3.1]
D BER92_13460 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D BER92_18315 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D BER92_11845 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D BER92_11840 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D BER92_04895 prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
C 00340 Histidine metabolism [PATH:xfr00340]
D BER92_09200 ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D BER92_09235 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31]
D BER92_09225 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D BER92_09220 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D BER92_09230 imidazole glycerol phosphate synthase subunit HisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D BER92_09215 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase K01089 hisB; imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase [EC:4.2.1.19 3.1.3.15]
D BER92_09210 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D BER92_09205 histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D BER92_08520 histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
D BER92_08510 urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49]
D BER92_08525 imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7]
D BER92_08530 formimidoylglutamate deiminase K05603 hutF; formimidoylglutamate deiminase [EC:3.5.3.13]
D BER92_08515 N-formylglutamate deformylase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68]
D BER92_18705 dimethylhistidine N-methyltransferase K18911 egtD; L-histidine Nalpha-methyltransferase [EC:2.1.1.44]
C 00350 Tyrosine metabolism [PATH:xfr00350]
D BER92_09210 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D BER92_01975 aromatic amino acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D BER92_00565 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D BER92_00570 homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5]
D BER92_15730 maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2]
D BER92_15735 2-keto-4-pentenoate hydratase K16171 faaH; fumarylacetoacetate (FAA) hydrolase [EC:3.7.1.2]
D BER92_02985 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D BER92_02455 alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D BER92_15115 4-hydroxy-2-oxovalerate aldolase K02510 hpaI; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52]
D BER92_07560 succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D BER92_05345 fumarylacetoacetate hydrolase K16165 nagK; fumarylpyruvate hydrolase [EC:3.7.1.20]
C 00360 Phenylalanine metabolism [PATH:xfr00360]
D BER92_18745 phenylalanine 4-monooxygenase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1]
D BER92_09210 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D BER92_01975 aromatic amino acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D BER92_00565 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D BER92_12435 amino acid dehydrogenase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
D BER92_16080 D-amino acid dehydrogenase small subunit K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
D BER92_13245 catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21]
D BER92_13520 benzene 1,2-dioxygenase K05710 hcaC; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin component
D BER92_18785 2-keto-4-pentenoate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
C 00380 Tryptophan metabolism [PATH:xfr00380]
D BER92_00540 tryptophan 2,3-dioxygenase K00453 TDO2; tryptophan 2,3-dioxygenase [EC:1.13.11.11]
D BER92_08390 kynurenine 3-monooxygenase K00486 KMO; kynurenine 3-monooxygenase [EC:1.14.13.9]
D BER92_08395 kynureninase K01556 KYNU; kynureninase [EC:3.7.1.3]
D BER92_08405 3-hydroxyanthranilate 3,4-dioxygenase K00452 HAAO; 3-hydroxyanthranilate 3,4-dioxygenase [EC:1.13.11.6]
D BER92_08040 dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D BER92_08035 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BER92_15940 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BER92_06790 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D BER92_07085 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D BER92_02050 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D BER92_18515 catalase K03781 katE; catalase [EC:1.11.1.6]
D BER92_01390 catalase K03781 katE; catalase [EC:1.11.1.6]
D BER92_15065 catalase HPII K03781 katE; catalase [EC:1.11.1.6]
D BER92_13245 catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:xfr00400]
D BER92_02160 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D BER92_17485 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D BER92_14685 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D BER92_16255 type II 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D BER92_18530 shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D BER92_14680 aroK; shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D BER92_12525 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D BER92_08580 chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D BER92_18040 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D BER92_17985 anthranilate/aminodeoxychorismate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D BER92_17975 anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D BER92_07150 N-(5'-phosphoribosyl)anthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D BER92_17970 trpC; indole-3-glycerol-phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D BER92_07180 tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D BER92_07175 tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D BER92_15885 chorismate mutase K04093 pheA1; chorismate mutase [EC:5.4.99.5]
D BER92_12530 chorismate mutase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D BER92_07985 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D BER92_09210 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D BER92_01975 aromatic amino acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D BER92_18745 phenylalanine 4-monooxygenase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1]
D BER92_01675 pteridine-dependent deoxygenase K18240 xanB2; chorismate lyase / 3-hydroxybenzoate synthase [EC:4.1.3.40 4.1.3.45]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:xfr00410]
D BER92_10825 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D BER92_10830 pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D BER92_06790 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D BER92_06760 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
C 00430 Taurine and hypotaurine metabolism [PATH:xfr00430]
D BER92_12635 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D BER92_07590 glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
C 00440 Phosphonate and phosphinate metabolism
D BER92_18005 aminotransferase class V K03430 phnW; 2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37]
C 00450 Selenocompound metabolism [PATH:xfr00450]
D BER92_05830 O-succinylhomoserine (thiol)-lyase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D BER92_08180 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D BER92_08185 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D BER92_16410 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D BER92_15695 cystathionine beta-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D BER92_13510 cysteine sulfinate desulfinase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D BER92_05650 thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D BER92_10145 thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D BER92_16710 adenylyl-sulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
D BER92_16715 sulfate adenylyltransferase small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D BER92_12190 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:xfr00460]
D BER92_18215 beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D BER92_10775 1,4-beta-D-glucan glucohydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D BER92_13775 beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D BER92_12635 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D BER92_04980 asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D BER92_04480 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:xfr00470]
D BER92_16075 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D BER92_03785 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D BER92_18180 dipeptide epimerase K19802 ycjG; L-Ala-D/L-Glu epimerase / N-acetyl-D-glutamate racemase [EC:5.1.1.20 5.1.1.25]
D BER92_02670 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D BER92_15145 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D BER92_13390 diaminopimelate decarboxylase K12526 lysAC; bifunctional diaminopimelate decarboxylase / aspartate kinase [EC:4.1.1.20 2.7.2.4]
D BER92_06200 hydroxyproline-2-epimerase K12658 lhpA; 4-hydroxyproline epimerase [EC:5.1.1.8]
D BER92_06215 oxidoreductase K22549 lhpC; D-hydroxyproline dehydrogenase subunit alpha [EC:1.5.99.-]
D BER92_06205 D-amino-acid oxidase K21061 lhpB; D-hydroxyproline dehydrogenase subunit beta [EC:1.5.99.-]
D BER92_06210 (2Fe-2S)-binding protein K22550 lhpD; D-hydroxyproline dehydrogenase subunit gamma
D BER92_06220 dihydrodipicolinate synthase family protein K21062 lhpC; 1-pyrroline-4-hydroxy-2-carboxylate deaminase [EC:3.5.4.22]
D BER92_06225 ketoglutarate semialdehyde dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26]
D BER92_12435 amino acid dehydrogenase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
D BER92_16080 D-amino acid dehydrogenase small subunit K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
C 00480 Glutathione metabolism [PATH:xfr00480]
D BER92_12635 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D BER92_02425 glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D BER92_04160 glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D BER92_01400 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D BER92_04300 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D BER92_06695 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D BER92_04025 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D BER92_12050 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D BER92_04840 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D BER92_12430 glutathione-disulfide reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7]
D BER92_00255 isocitrate dehydrogenase (NADP(+)) K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D BER92_02870 6-phosphogluconate dehydrogenase (decarboxylating) K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D BER92_01775 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D BER92_11585 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D BER92_19235 glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
D BER92_06610 glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
D BER92_08130 glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
D BER92_13875 peroxiredoxin K24138 prx3; glutaredoxin/glutathione-dependent peroxiredoxin [EC:1.11.1.25 1.11.1.27]
D BER92_01615 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation [PATH:xfr00511]
D BER92_13765 beta-hexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D BER92_13770 beta-mannosidase K01192 E3.2.1.25; beta-mannosidase [EC:3.2.1.25]
D BER92_04235 alpha-L-fucosidase K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51]
D BER92_13755 alpha-L-fucosidase K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51]
D BER92_10875 alpha/beta hydrolase K15923 AXY8; alpha-L-fucosidase 2 [EC:3.2.1.51]
C 00540 Lipopolysaccharide biosynthesis [PATH:xfr00540]
D BER92_06375 acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D BER92_03805 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D BER92_06385 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D BER92_15335 UDP-2,3-diacylglucosamine diphosphatase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D BER92_06370 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D BER92_11500 tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D BER92_13645 D-arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D BER92_08740 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D BER92_13650 phenylphosphate carboxylase subunit delta K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D BER92_11495 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D BER92_03270 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D BER92_00935 lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D BER92_03265 lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D BER92_17690 aspartyl beta-hydroxylase K12979 lpxO; beta-hydroxylase [EC:1.14.11.-]
D BER92_02790 hypothetical protein K09953 lpxR; lipid A 3-O-deacylase [EC:3.1.1.-]
D BER92_15040 phosphoethanolamine transferase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D BER92_14125 3-deoxy-D-manno-octulosonic acid kinase K11211 kdkA; 3-deoxy-D-manno-octulosonic acid kinase [EC:2.7.1.166]
D BER92_00970 polymerase K02847 waaL; O-antigen ligase [EC:2.4.99.26]
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:xfr00541]
D BER92_09040 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D BER92_17180 UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D BER92_17190 UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D BER92_08140 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D BER92_18385 protein CapI K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D BER92_15605 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D BER92_15610 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D BER92_15600 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D BER92_15595 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D BER92_15590 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D BER92_15655 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D BER92_15650 GDP-mannose 4,6 dehydratase K22252 tld; GDP-6-deoxy-D-talose 4-dehydrogenase [EC:1.1.1.135]
D BER92_15875 UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D BER92_09760 UDP-N-acetyl-D-galactosamine dehydrogenase K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
C 00550 Peptidoglycan biosynthesis [PATH:xfr00550]
D BER92_13635 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D BER92_10695 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D BER92_03780 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D BER92_13375 UDP-N-acetylmuramoylalanine--D-glutamate ligase K23169 murD2; UDP-N-acetylmuramoyl-L-alanine---L-glutamate ligase [EC:6.3.2.53]
D BER92_13380 hypothetical protein K23170 murL; UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L-glutamate epimerase [EC:5.1.1.23]
D BER92_03755 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D BER92_03785 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D BER92_03760 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D BER92_06415 di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D BER92_18585 undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D BER92_15330 phosphoesterase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D BER92_03765 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D BER92_03775 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D BER92_05785 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D BER92_03630 peptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D BER92_04135 penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D BER92_02760 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D BER92_03750 cell division protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D BER92_02785 serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D BER92_14965 peptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
C 00552 Teichoic acid biosynthesis [PATH:xfr00552]
D BER92_18585 undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D BER92_15330 phosphoesterase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:xfr00543]
D BER92_06070 glycosyl transferase family 1 K13657 gumH; alpha-1,3-mannosyltransferase [EC:2.4.1.252]
D BER92_06085 glycosyl transferase family 1 K13659 gumK; 2-beta-glucuronyltransferase [EC:2.4.1.264]
D BER92_06060 polysaccharide biosynthesis protein GumF K13663 gumF; acyltransferase [EC:2.3.1.-]
D BER92_06050 undecaprenyl-phosphate glucose phosphotransferase K13656 gumD; undecaprenyl-phosphate glucose phosphotransferase [EC:2.7.8.31]
D BER92_06095 polysaccharide biosynthesis protein GumM K13660 gumM; beta-1,4-glucosyltransferase [EC:2.4.1.-]
D BER92_06075 GDP-mannose--glycolipid 4-beta-D-mannosyltransferase K13658 gumI; beta-1,4-mannosyltransferase [EC:2.4.1.251]
D BER92_06065 polysaccharide biosynthesis protein GumF K13664 gumG; acyltransferase [EC:2.3.1.-]
D BER92_06090 polysaccharide biosynthesis protein GumL K13665 gumL; pyruvyltransferase
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:xfr00730]
D BER92_03360 phosphomethylpyrimidine synthase ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D BER92_10990 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D BER92_16825 hypothetical protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D BER92_06105 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D BER92_05365 thiazole synthase K03149 thiG; thiazole synthase [EC:2.8.1.10]
D BER92_03485 thiamine-phosphate diphosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D BER92_02390 thiamine-phosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D BER92_03130 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D BER92_12705 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D BER92_03425 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:xfr00740]
D BER92_00945 GTP cyclohydrolase K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D BER92_02375 3,4-dihydroxy-2-butanone-4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D BER92_04495 riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D BER92_01405 HAD family hydrolase K20862 yigB; FMN hydrolase / 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.102 3.1.3.104]
D BER92_02380 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D BER92_02370 riboflavin synthase subunit alpha K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D BER92_14835 riboflavin biosynthesis protein RibF K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D BER92_04910 DNA mismatch repair protein MutT K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
C 00750 Vitamin B6 metabolism [PATH:xfr00750]
D BER92_14675 pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D BER92_07980 pyridoxal kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D BER92_12535 phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D BER92_04740 4-hydroxythreonine-4-phosphate dehydrogenase PdxA K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
D BER92_00075 pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2]
D BER92_10585 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:xfr00760]
D BER92_07365 nicotinate-nucleotide diphosphorylase (carboxylating) K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D BER92_08365 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D BER92_08775 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D BER92_12805 nicotinic acid mononucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D BER92_05690 nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D BER92_16355 NADH pyrophosphatase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D BER92_03945 NAD+ synthase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D BER92_11155 damage-inducible protein CinA K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D BER92_02840 nicotinate phosphoribosyltransferase K03462 NAMPT; nicotinamide phosphoribosyltransferase [EC:2.4.2.12]
D BER92_08360 NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D BER92_07560 succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:xfr00770]
D BER92_03335 acetolactate synthase 2 catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D BER92_03330 acetolactate synthase K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D BER92_03340 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D BER92_16430 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D BER92_10835 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D BER92_00595 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D BER92_10830 pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D BER92_01265 pantothenate kinase K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D BER92_18415 phosphopantothenoylcysteine decarboxylase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D BER92_05690 nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D BER92_12650 pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D BER92_03885 dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D BER92_01185 4-phosphopantetheinyl transferase K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-]
D BER92_04955 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D BER92_10825 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
C 00780 Biotin metabolism [PATH:xfr00780]
D BER92_17685 malonyl-[acyl-carrier protein] O-methyltransferase BioC K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197]
D BER92_01750 beta-ketoacyl-[acyl-carrier-protein] synthase II K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D BER92_15805 beta-ketoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D BER92_13995 beta-ketoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D BER92_01730 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D BER92_14005 fabG; 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D BER92_06380 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D BER92_17670 pimeloyl-[acyl-carrier protein] methyl ester esterase K02170 bioH; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85]
D BER92_17660 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D BER92_05675 adenosylmethionine--8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D BER92_15755 dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D BER92_17655 biotin synthase BioB K01012 bioB; biotin synthase [EC:2.8.1.6]
D BER92_01260 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:xfr00785]
D BER92_02800 octanoyltransferase K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D BER92_02805 lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D BER92_08035 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BER92_15940 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BER92_17345 pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D BER92_08045 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D BER92_08040 dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D BER92_00535 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D BER92_00530 2-oxoisovalerate dehydrogenase K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D BER92_00520 branched-chain alpha-keto acid dehydrogenase subunit E2 K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D BER92_15060 glycine dehydrogenase (aminomethyl-transferring) K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D BER92_05695 gcvT; glycine cleavage system protein T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D BER92_05700 glycine cleavage system protein H K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:xfr00790]
D BER92_19125 GTP cyclohydrolase I FolE K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D BER92_12705 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D BER92_18220 dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D BER92_10840 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D BER92_02900 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D BER92_11180 dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D BER92_04720 diacylglycerol kinase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D BER92_15375 bifunctional folylpolyglutamate synthase/dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D BER92_00945 GTP cyclohydrolase K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D BER92_02375 3,4-dihydroxy-2-butanone-4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D BER92_13990 aminodeoxychorismate synthase, component I K25578 pabB; 4-amino-4-deoxychorismate synthase (2-amino-4-deoxychorismate-forming) component I [EC:2.6.1.123]
D BER92_15745 6-carboxytetrahydropterin synthase QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D BER92_09685 4a-hydroxytetrahydrobiopterin dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D BER92_18745 phenylalanine 4-monooxygenase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1]
D BER92_02905 pteridine reductase K03793 PTR1; pteridine reductase [EC:1.5.1.33]
D BER92_14420 7-carboxy-7-deazaguanine synthase QueE K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D BER92_04055 7-cyano-7-deazaguanine synthase QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D BER92_00280 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D BER92_14115 cyclic pyranopterin phosphate synthase K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D BER92_14110 molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D BER92_14100 molybdopterin-converting factor chain 2 K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D BER92_05015 molybdenum cofactor biosynthesis protein B K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75]
D BER92_10035 molybdopterin molybdenumtransferase MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D BER92_10060 molybdopterin molybdenumtransferase MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D BER92_13335 hypothetical protein K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76]
D BER92_10030 molybdenum cofactor guanylyltransferase K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:xfr00670]
D BER92_04720 diacylglycerol kinase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D BER92_09080 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D BER92_04480 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D BER92_13610 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D BER92_16305 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D BER92_00985 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D BER92_05695 gcvT; glycine cleavage system protein T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D BER92_08180 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D BER92_08185 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D BER92_04710 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D BER92_16485 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D BER92_03840 methylenetetrahydrofolate reductase [NAD(P)H] K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D BER92_03515 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:xfr00860]
D BER92_13195 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D BER92_05030 glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D BER92_03480 glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D BER92_18545 delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D BER92_02615 hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D BER92_02065 uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D BER92_14695 uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D BER92_01645 coproporphyrinogen III oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3]
D BER92_06350 hypothetical protein K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-]
D BER92_18970 ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D BER92_02060 hypothetical protein K02496 hemX; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D BER92_16765 uroporphyrinogen-III C-methyltransferase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
D BER92_10020 siroheme synthase K24866 sirC; precorrin-2 dehydrogenase [EC:1.3.1.76]
D BER92_18260 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D BER92_18265 cytochrome oxidase assembly protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D BER92_04760 ATP:cob(I)alamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D BER92_17910 bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1]
D BER92_06525 bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1]
D BER92_13880 bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:xfr00130]
D BER92_01675 pteridine-dependent deoxygenase K18240 xanB2; chorismate lyase / 3-hydroxybenzoate synthase [EC:4.1.3.40 4.1.3.45]
D BER92_17645 4-hydroxybenzoate polyprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D BER92_11975 bifunctional 3-demethylubiquinol 3-O-methyltransferase/2-polyprenyl-6-hydroxyphenol methylase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
D BER92_04770 2-octaprenyl-6-methoxyphenyl hydroxylase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
D BER92_02715 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D BER92_04775 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase K03184 ubiF; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60]
D BER92_17945 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase K06134 COQ7; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60]
D BER92_18655 thioesterase K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28]
D BER92_04990 NAD(P)H:quinone oxidoreductase, type IV K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D BER92_00565 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:xfr00900]
D BER92_06105 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D BER92_06405 1-deoxy-D-xylulose-5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D BER92_08755 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D BER92_05045 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D BER92_08760 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D BER92_10710 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D BER92_14820 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D BER92_07085 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D BER92_02050 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D BER92_12720 geranyl transferase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D BER92_13365 octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D BER92_06415 di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation [PATH:xfr00907]
D BER92_06790 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D BER92_03455 short chain dehydrogenase K13775 atuG; citronellol/citronellal dehydrogenase
D BER92_09320 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D BER92_10110 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D BER92_16960 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:xfr00523]
D BER92_15605 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D BER92_15610 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D BER92_15600 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D BER92_15595 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides [PATH:xfr01053]
D BER92_18470 non-ribosomal peptide synthetase K02364 entF; L-serine---[L-seryl-carrier protein] ligase [EC:6.3.2.14 6.2.1.72]
C 01055 Biosynthesis of vancomycin group antibiotics
D BER92_15610 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids [PATH:xfr00946]
D BER92_18215 beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D BER92_10775 1,4-beta-D-glucan glucohydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D BER92_13775 beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
D BER92_06515 penicillin acylase K01434 pac; penicillin G amidase [EC:3.5.1.11]
C 00332 Carbapenem biosynthesis [PATH:xfr00332]
D BER92_11845 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D BER92_11840 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:xfr00261]
D BER92_16710 adenylyl-sulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
D BER92_16715 sulfate adenylyltransferase small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D BER92_10610 bifunctional aspartate kinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D BER92_13390 diaminopimelate decarboxylase K12526 lysAC; bifunctional diaminopimelate decarboxylase / aspartate kinase [EC:4.1.1.20 2.7.2.4]
D BER92_08590 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D BER92_10960 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D BER92_09355 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:xfr00521]
D BER92_11590 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D BER92_13745 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D BER92_18405 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D BER92_15585 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D BER92_12005 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D BER92_15605 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D BER92_15610 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D BER92_15600 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D BER92_15595 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D BER92_11590 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D BER92_13745 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:xfr00525]
D BER92_15605 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D BER92_15610 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:xfr00401]
D BER92_07985 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D BER92_09210 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D BER92_01975 aromatic amino acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D BER92_18040 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D BER92_17985 anthranilate/aminodeoxychorismate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D BER92_14010 [acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D BER92_17390 malonate decarboxylase subunit epsilon K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D BER92_01730 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D BER92_14005 fabG; 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D BER92_01685 acyl carrier protein K02078 acpP; acyl carrier protein
D BER92_14000 acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:xfr00999]
D BER92_04580 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D BER92_18530 shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D BER92_18215 beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D BER92_10775 1,4-beta-D-glucan glucohydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D BER92_13775 beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:xfr00362]
D BER92_10110 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D BER92_18785 2-keto-4-pentenoate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
D BER92_06790 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D BER92_10105 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D BER92_07085 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D BER92_02050 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00627 Aminobenzoate degradation
C 00364 Fluorobenzoate degradation [PATH:xfr00364]
D BER92_12380 carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00625 Chloroalkane and chloroalkene degradation [PATH:xfr00625]
D BER92_02455 alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D BER92_02985 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:xfr00361]
D BER92_12380 carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00623 Toluene degradation [PATH:xfr00623]
D BER92_12380 carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00622 Xylene degradation
D BER92_18785 2-keto-4-pentenoate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
C 00633 Nitrotoluene degradation [PATH:xfr00633]
D BER92_12310 alkene reductase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
C 00642 Ethylbenzene degradation
D BER92_10110 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 00643 Styrene degradation [PATH:xfr00643]
D BER92_00570 homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5]
D BER92_15730 maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2]
D BER92_15735 2-keto-4-pentenoate hydratase K16171 faaH; fumarylacetoacetate (FAA) hydrolase [EC:3.7.1.2]
C 00791 Atrazine degradation
C 00930 Caprolactam degradation [PATH:xfr00930]
D BER92_17465 gluconolactonase K01053 gnl; gluconolactonase [EC:3.1.1.17]
D BER92_04810 gluconolactonase K01053 gnl; gluconolactonase [EC:3.1.1.17]
D BER92_06790 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
D BER92_18785 2-keto-4-pentenoate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
C 00626 Naphthalene degradation [PATH:xfr00626]
D BER92_02455 alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D BER92_02985 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:xfr03020]
D BER92_05130 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D BER92_05135 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D BER92_05285 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D BER92_03585 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:xfr03010]
D BER92_09010 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D BER92_06440 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D BER92_05195 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D BER92_05280 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D BER92_05250 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D BER92_08445 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D BER92_05145 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D BER92_05235 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D BER92_17935 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D BER92_05160 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D BER92_05275 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D BER92_05140 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D BER92_05270 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D BER92_05230 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D BER92_07340 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D BER92_05925 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D BER92_05210 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D BER92_08450 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D BER92_05185 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D BER92_14845 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D BER92_18230 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D BER92_05115 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D BER92_05180 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D BER92_05165 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D BER92_05170 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D BER92_05225 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D BER92_05240 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D BER92_05125 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D BER92_08455 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D BER92_05120 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D BER92_05110 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D BER92_17940 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D BER92_05215 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D BER92_05260 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D BER92_05200 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D BER92_05290 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D BER92_05245 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D BER92_05940 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D BER92_06010 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D BER92_14860 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D BER92_05190 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D BER92_05175 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D BER92_05220 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D BER92_05060 50S ribosomal protein L25/general stress protein Ctc K02897 RP-L25; large subunit ribosomal protein L25
D BER92_14855 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D BER92_01210 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D BER92_05205 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D BER92_05255 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D BER92_03615 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D BER92_14020 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D BER92_01215 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D BER92_19325 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D BER92_06005 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D BER92_00430 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D BER92_00445 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D BER92_00450 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:xfr00970]
D BER92_00435 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D BER92_16225 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D BER92_06920 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D BER92_11625 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D BER92_10640 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D BER92_17640 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D BER92_15260 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D BER92_11000 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D BER92_10995 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D BER92_07685 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D BER92_14390 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D BER92_14385 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D BER92_11465 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D BER92_05050 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D BER92_17930 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D BER92_11630 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D BER92_10850 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D BER92_05380 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D BER92_05080 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D BER92_11470 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D BER92_11460 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D BER92_15255 tRNA-His K14226 tRNA-His; tRNA His
D BER92_16810 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D BER92_16220 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D BER92_00440 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D BER92_14350 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D BER92_07235 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D BER92_09765 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D BER92_11650 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D BER92_06565 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D BER92_08205 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D BER92_04050 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D BER92_15250 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D BER92_07310 tRNA-Met K14230 tRNA-Met; tRNA Met
D BER92_17925 tRNA-Met K14230 tRNA-Met; tRNA Met
D BER92_00910 tRNA-Met K14230 tRNA-Met; tRNA Met
D BER92_06135 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D BER92_07650 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D BER92_15265 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D BER92_06035 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D BER92_14090 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D BER92_14140 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D BER92_12500 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D BER92_11025 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D BER92_14815 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D BER92_05085 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D BER92_01275 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D BER92_05095 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D BER92_05075 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D BER92_14380 tRNA-Val K14237 tRNA-Val; tRNA Val
D BER92_07695 tRNA-Val K14237 tRNA-Val; tRNA Val
D BER92_13970 tRNA-Val K14237 tRNA-Val; tRNA Val
D BER92_13195 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D BER92_04835 glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D BER92_11035 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D BER92_14495 aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D BER92_08435 asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D BER92_18930 glycine--tRNA ligase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D BER92_18925 glycine--tRNA ligase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D BER92_05995 threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D BER92_12510 serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D BER92_11900 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D BER92_12190 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D BER92_00985 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D BER92_04290 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D BER92_12820 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D BER92_14830 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D BER92_09400 lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D BER92_18425 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D BER92_15525 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D BER92_09190 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D BER92_06015 phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D BER92_06020 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D BER92_18320 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D BER92_01335 tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:xfr03060]
D BER92_05265 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D BER92_05100 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D BER92_07230 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D BER92_12575 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D BER92_12570 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D BER92_12580 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D BER92_19315 membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D BER92_03820 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D BER92_02085 protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D BER92_05905 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D BER92_14095 ffs; signal recognition particle sRNA small type K01983 ffs; SRP RNA
D BER92_06190 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D BER92_18960 tatA; preprotein translocase subunit SecA K03116 tatA; sec-independent protein translocase protein TatA
D BER92_18955 twin arginine-targeting protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB
D BER92_18950 twin arginine-targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
D BER92_06965 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D BER92_14825 signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:xfr04122]
D BER92_16825 hypothetical protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D BER92_08320 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D BER92_10180 tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D BER92_14100 molybdopterin-converting factor chain 2 K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D BER92_14115 cyclic pyranopterin phosphate synthase K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D BER92_14105 molybdopterin synthase sulfur carrier subunit K03636 moaD; sulfur-carrier protein
D BER92_14110 molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D BER92_05015 molybdenum cofactor biosynthesis protein B K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75]
D BER92_05370 sulfur carrier protein ThiS K03154 thiS; sulfur carrier protein
C 03050 Proteasome
C 03018 RNA degradation [PATH:xfr03018]
D BER92_17920 RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D BER92_09725 ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D BER92_00235 ATP-dependent RNA helicase RhlB K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D BER92_08745 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D BER92_07345 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D BER92_15740 RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D BER92_00515 RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D BER92_08210 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D BER92_13075 ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D BER92_04085 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D BER92_00245 transcription termination factor Rho K03628 rho; transcription termination factor Rho
D BER92_07970 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D BER92_17505 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D BER92_11170 RNA chaperone Hfq K03666 hfq; host factor-I protein
D BER92_15315 RNA degradosome polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D BER92_05010 polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D BER92_10845 polynucleotide adenylyltransferase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:xfr03030]
D BER92_14150 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D BER92_06360 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D BER92_14085 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D BER92_13980 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D BER92_12810 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D BER92_04295 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D BER92_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D BER92_06710 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D BER92_18245 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D BER92_13355 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D BER92_14155 ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D BER92_06365 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D BER92_01640 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D BER92_08470 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:xfr03410]
D BER92_08295 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D BER92_00215 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D BER92_06185 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D BER92_06915 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D BER92_14180 DNA-formamidopyrimidine glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D BER92_14970 DNA-3-methyladenine glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D BER92_13430 DNA-3-methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D BER92_15955 DNA-deoxyinosine glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
D BER92_17065 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D BER92_18350 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D BER92_01170 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D BER92_01640 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D BER92_09390 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D BER92_08470 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:xfr03420]
D BER92_13235 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D BER92_14865 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D BER92_07690 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
D BER92_11480 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D BER92_01230 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D BER92_01640 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D BER92_08470 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:xfr03430]
D BER92_13240 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D BER92_12110 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D BER92_01230 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D BER92_08385 exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D BER92_12135 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D BER92_12715 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D BER92_09390 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D BER92_13355 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D BER92_06360 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D BER92_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D BER92_14085 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D BER92_12810 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D BER92_13980 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D BER92_14150 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D BER92_04295 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D BER92_08470 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:xfr03440]
D BER92_09390 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D BER92_13355 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D BER92_00020 DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF
D BER92_06985 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D BER92_14075 recombination protein RecR K06187 recR; recombination protein RecR
D BER92_11045 recombinase RecA K03553 recA; recombination protein RecA
D BER92_01640 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D BER92_14470 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D BER92_14460 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D BER92_14475 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D BER92_03600 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D BER92_19190 exodeoxyribonuclease V subunit beta K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D BER92_19195 exodeoxyribonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D BER92_19185 exodeoxyribonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D BER92_06360 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D BER92_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D BER92_14085 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D BER92_12810 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D BER92_13980 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D BER92_14150 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D BER92_04295 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D BER92_00195 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus and Lyssavirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:xfr02010]
D BER92_02260 sulfate transporter subunit K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D BER92_02265 sulfate ABC transporter permease subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D BER92_02270 sulfate ABC transporter permease subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D BER92_02275 sulfate ABC transporter ATP-binding protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D BER92_16910 molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D BER92_16915 molybdate ABC transporter permease K02018 modB; molybdate transport system permease protein
D BER92_16920 molybdenum ABC transporter ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D BER92_03185 ABC transporter substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D BER92_07525 spermidine/putrescine ABC transporter substrate-binding protein PotF K11073 potF; putrescine transport system substrate-binding protein
D BER92_07555 putrescine ABC transporter permease PotI K11074 potI; putrescine transport system permease protein
D BER92_07550 putrescine ABC transporter permease PotH K11075 potH; putrescine transport system permease protein
D BER92_07545 potG; putrescine transporter ATP-binding subunit K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D BER92_18720 amino acid ABC transporter permease K05845 opuC; osmoprotectant transport system substrate-binding protein
D BER92_18725 ABC transporter ATP-binding protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D BER92_11580 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D BER92_19215 organic solvent ABC transporter K07323 mlaC; phospholipid transport system substrate-binding protein
D BER92_19210 outer membrane lipid asymmetry maintenance protein MlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D BER92_15550 ABC transporter substrate-binding protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D BER92_19205 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D BER92_15540 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D BER92_19220 anti-sigma B factor antagonist K07122 mlaB; phospholipid transport system transporter-binding protein
D BER92_19200 ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D BER92_15545 ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D BER92_08255 phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D BER92_08265 phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D BER92_08250 phosphate ABC transporter permease subunit PstC K02037 pstC; phosphate transport system permease protein
D BER92_08245 phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein
D BER92_08240 phosphate ABC transporter ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D BER92_15970 methionine ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D BER92_15975 metal ABC transporter permease K02072 metI; D-methionine transport system permease protein
D BER92_15980 methionine ABC transporter ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D BER92_15685 ABC transporter K09690 wzm; homopolymeric O-antigen transport system permease protein
D BER92_15680 ABC transporter ATP-binding protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D BER92_00635 sodium ABC transporter permease K09696 natB; sodium transport system permease protein
D BER92_00630 ABC transporter ATP-binding protein K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4]
D BER92_11535 cell division protein FtsX K09808 lolC_E; lipoprotein-releasing system permease protein
D BER92_11530 lipoprotein releasing system, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D BER92_08870 heme exporter protein CcmD K02196 ccmD; heme exporter protein D
D BER92_08875 heme ABC transporter permease K02195 ccmC; heme exporter protein C
D BER92_08880 heme exporter protein CcmB K02194 ccmB; heme exporter protein B
D BER92_08885 heme ABC exporter, ATP-binding protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D BER92_04305 LPS export ABC transporter permease LptF K07091 lptF; lipopolysaccharide export system permease protein
D BER92_04310 LPS export ABC transporter permease LptG K11720 lptG; lipopolysaccharide export system permease protein
D BER92_13665 LPS export ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D BER92_00225 cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D BER92_00230 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D BER92_11505 lipid A export permease/ATP-binding protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D BER92_03100 peptidase C39 K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D BER92_05540 ABC transporter K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D BER92_13025 multidrug ABC transporter ATP-binding protein K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump
C 02060 Phosphotransferase system (PTS) [PATH:xfr02060]
D BER92_13705 phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D BER92_13700 phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr
D BER92_13695 PTS fructose IIA subunit family protein K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D BER92_12550 phosphoenolpyruvate--protein phosphotransferase K23993 fruB; multiphosphoryl transfer protein [EC:2.7.3.9 2.7.1.202]
D BER92_12560 PTS fructose transporter subunit IIBC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D BER92_12555 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D BER92_13680 PTS fructose transporter subunit IIA K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
C 03070 Bacterial secretion system [PATH:xfr03070]
D BER92_03275 hypothetical protein K12340 tolC; outer membrane protein
D BER92_03105 hemolysin secretion protein D K11003 hlyD; membrane fusion protein, hemolysin D
D BER92_03100 peptidase C39 K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D BER92_12865 EscC/YscC/HrcC family type III secretion system outer membrane ring protein K03219 yscC; type III secretion protein C
D BER92_12895 EscJ/YscJ/HrcJ family type III secretion inner membrane ring protein K03222 yscJ; type III secretion protein J
D BER92_12930 EscR/YscR/HrcR family type III secretion system export apparatus protein K03226 yscR; type III secretion protein R
D BER92_12935 EscS/YscS/HrcS family type III secretion system export apparatus protein K03227 yscS; type III secretion protein S
D BER92_12870 EscT/YscT/HrcT family type III secretion system export apparatus protein K03228 yscT; type III secretion protein T
D BER92_12910 EscU/YscU/HrcU family type III secretion system export apparatus switch protein K03229 yscU; type III secretion protein U
D BER92_12915 EscV/YscV/HrcV family type III secretion system export apparatus protein K03230 yscV; type III secretion protein V
D BER92_12880 EscN/YscN/HrcN family type III secretion system ATPase K03224 yscN; ATP synthase in type III secretion protein N [EC:7.4.2.8]
D BER92_12925 aldolase K03225 yscQ; type III secretion protein Q
D BER92_12885 ATP-dependent helicase HrpB K03223 yscL; type III secretion protein L
D BER92_04405 type II secretion system protein GspD K02453 gspD; general secretion pathway protein D
D BER92_04360 type II secretion system protein GspF K02455 gspF; general secretion pathway protein F
D BER92_04365 type II secretion system protein GspG K02456 gspG; general secretion pathway protein G
D BER92_04370 type II secretion system protein GspH K02457 gspH; general secretion pathway protein H
D BER92_04375 general secretion pathway protein GspI K02458 gspI; general secretion pathway protein I
D BER92_04380 general secretion pathway protein GspJ K02459 gspJ; general secretion pathway protein J
D BER92_04385 general secretion pathway protein GspK K02460 gspK; general secretion pathway protein K
D BER92_04390 general secretion pathway protein GspL K02461 gspL; general secretion pathway protein L
D BER92_04395 general secretion pathway protein GspM K02462 gspM; general secretion pathway protein M
D BER92_18935 type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D BER92_04355 type II secretion system protein GspE K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D BER92_12575 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D BER92_12570 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D BER92_05100 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D BER92_07230 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D BER92_05265 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D BER92_12580 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D BER92_19315 membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D BER92_03820 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D BER92_06190 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D BER92_02085 protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D BER92_05905 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D BER92_18960 tatA; preprotein translocase subunit SecA K03116 tatA; sec-independent protein translocase protein TatA
D BER92_18955 twin arginine-targeting protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB
D BER92_18950 twin arginine-targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
D BER92_07730 hypothetical protein K03194 virB1; type IV secretion system protein VirB1
D BER92_07735 hypothetical protein K03197 virB2; type IV secretion system protein VirB2
D BER92_19400 type IV secretion system protein VirB3 K03198 virB3; type IV secretion system protein VirB3
D BER92_07740 hypothetical protein K03198 virB3; type IV secretion system protein VirB3
D BER92_19390 hypothetical protein K03200 virB5; type IV secretion system protein VirB5
D BER92_07750 hypothetical protein K03200 virB5; type IV secretion system protein VirB5
D BER92_07790 hypothetical protein K03200 virB5; type IV secretion system protein VirB5
D BER92_07820 hypothetical protein K03200 virB5; type IV secretion system protein VirB5
D BER92_19370 hypothetical protein K03204 virB9; type IV secretion system protein VirB9
D BER92_19380 hypothetical protein K03201 virB6; type IV secretion system protein VirB6
D BER92_07755 hypothetical protein K03201 virB6; type IV secretion system protein VirB6
D BER92_07795 hypothetical protein K03201 virB6; type IV secretion system protein VirB6
D BER92_07825 hypothetical protein K03201 virB6; type IV secretion system protein VirB6
D BER92_19375 hypothetical protein K03203 virB8; type IV secretion system protein VirB8
D BER92_07710 conjugative transfer protein K03203 virB8; type IV secretion system protein VirB8
D BER92_19365 hypothetical protein K03195 virB10; type IV secretion system protein VirB10
D BER92_07720 hypothetical protein K03195 virB10; type IV secretion system protein VirB10
D BER92_19395 hypothetical protein K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8]
D BER92_07745 hypothetical protein K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8]
D BER92_07810 hypothetical protein K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8]
D BER92_19360 P-type DNA transfer ATPase VirB11 K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8]
D BER92_07725 P-type DNA transfer ATPase VirB11 K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8]
D BER92_19355 hypothetical protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D BER92_19565 hypothetical protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D BER92_10785 type IV secretion system protein VirD4 K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D BER92_13740 type IV secretion system protein VirD4 K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D BER92_05515 type VI secretion protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D BER92_09885 type IV secretion protein Rhs K11904 vgrG; type VI secretion system secreted protein VgrG
D BER92_09910 type IV secretion protein Rhs K11904 vgrG; type VI secretion system secreted protein VgrG
D BER92_09950 type IV secretion protein Rhs K11904 vgrG; type VI secretion system secreted protein VgrG
D BER92_11420 type IV secretion protein Rhs K11904 vgrG; type VI secretion system secreted protein VgrG
D BER92_04245 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG
D BER92_09820 type IV secretion protein Rhs K11904 vgrG; type VI secretion system secreted protein VgrG
D BER92_11305 type IV secretion protein Rhs K11904 vgrG; type VI secretion system secreted protein VgrG
D BER92_11320 type IV secretion protein Rhs K11904 vgrG; type VI secretion system secreted protein VgrG
D BER92_15215 type IV secretion protein Rhs K11904 vgrG; type VI secretion system secreted protein VgrG
D BER92_00750 type IV secretion protein Rhs K11904 vgrG; type VI secretion system secreted protein VgrG
D BER92_09850 Hcp family protein K11903 hcp; type VI secretion system secreted protein Hcp
D BER92_09870 type VI secretion system-associated lipoprotein K11906 vasD; type VI secretion system protein VasD
D BER92_11345 type VI secretion protein VasK K11891 impL; type VI secretion system protein ImpL
D BER92_09880 type VI secretion system protein ImpK K11892 impK; type VI secretion system protein ImpK
D BER92_09830 ClpV1 family T6SS ATPase K11907 vasG; type VI secretion system protein VasG
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:xfr02020]
D BER92_15310 phosphate regulon sensor histidine kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D BER92_15305 phosphate regulon transcriptional regulatory protein PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D BER92_12705 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D BER92_08255 phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D BER92_08265 phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D BER92_18480 two-component sensor histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D BER92_18485 DNA-binding response regulator K07660 phoP; two-component system, OmpR family, response regulator PhoP
D BER92_06805 peptidase S1 K04771 degP; serine protease Do [EC:3.4.21.107]
D BER92_00290 efflux transporter periplasmic adaptor subunit K07799 mdtA; membrane fusion protein, multidrug efflux system
D BER92_00295 acriflavine resistance protein B K07788 mdtB; multidrug efflux pump
D BER92_00300 acriflavin resistance protein K07789 mdtC; multidrug efflux pump
D BER92_10300 flagellin K02406 fliC; flagellin
D BER92_10465 RNA polymerase sigma factor FliA K02405 fliA; RNA polymerase sigma factor FliA
D BER92_09570 motC; flagellar motor protein K02556 motA; chemotaxis protein MotA
D BER92_16100 flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA
D BER92_03180 histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
D BER92_03175 DNA-binding response regulator K07774 tctD; two-component system, OmpR family, response regulator TctD
D BER92_18265 cytochrome oxidase assembly protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D BER92_00005 chromosomal replication initiation protein DnaA K02313 dnaA; chromosomal replication initiator protein
D BER92_12270 hypothetical protein K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3]
D BER92_18165 D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D BER92_14965 peptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D BER92_07420 histidine kinase K08082 algZ; two-component system, LytTR family, sensor histidine kinase AlgZ [EC:2.7.13.3]
D BER92_02610 DNA-binding response regulator K08083 algR; two-component system, LytTR family, response regulator AlgR
D BER92_00630 ABC transporter ATP-binding protein K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4]
D BER92_00635 sodium ABC transporter permease K09696 natB; sodium transport system permease protein
D BER92_09735 sirA; two-component system response regulator UvrY K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D BER92_14600 LuxR family transcriptional regulator K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA
D BER92_11030 carbon storage regulator K03563 csrA; carbon storage regulator
D BER92_05710 serine hydrolase K01467 ampC; beta-lactamase class C [EC:3.5.2.6]
D BER92_06455 spore coat protein U K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D BER92_06470 adhesin K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D BER92_06445 pilus assembly protein K07346 fimC; fimbrial chaperone protein
D BER92_06465 pilus assembly protein K07346 fimC; fimbrial chaperone protein
D BER92_06460 fimbriae usher protein K07347 fimD; outer membrane usher protein
D BER92_06480 [protein-PII] uridylyltransferase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D BER92_18595 transcriptional regulator K04751 glnB; nitrogen regulatory protein P-II 1
D BER92_01590 transcriptional regulator K04751 glnB; nitrogen regulatory protein P-II 1
D BER92_18605 PAS domain-containing sensor histidine kinase K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D BER92_18610 nitrogen regulation protein NR(I) K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D BER92_18035 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BER92_18590 type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BER92_07515 gamma-glutamylputrescine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BER92_07520 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BER92_07085 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D BER92_02050 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D BER92_03235 C4-dicarboxylate transporter DctA K11103 dctA; aerobic C4-dicarboxylate transport protein
D BER92_03930 PAS domain-containing sensor histidine kinase K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3]
D BER92_03925 sigma-54-dependent Fis family transcriptional regulator K02667 pilR; two-component system, NtrC family, response regulator PilR
D BER92_10330 RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D BER92_13670 RNA polymerase factor sigma-54 K03092 rpoN; RNA polymerase sigma-54 factor
D BER92_03900 prepilin-type N-terminal cleavage/methylation domain-containing protein K02650 pilA; type IV pilus assembly protein PilA
D BER92_09475 chemotaxis protein CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D BER92_17135 methyltransferase K13924 cheBR; two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61]
D BER92_08600 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D BER92_09495 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D BER92_14585 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D BER92_10190 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D BER92_09505 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D BER92_09510 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D BER92_09520 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D BER92_09485 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D BER92_09555 chemotaxis protein K03408 cheW; purine-binding chemotaxis protein CheW
D BER92_09540 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D BER92_10480 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D BER92_09545 Fis family transcriptional regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D BER92_10470 histidine kinase K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D BER92_09465 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D BER92_10240 chemotaxis protein CheW K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D BER92_04180 chemotaxis protein K02660 pilJ; twitching motility protein PilJ
D BER92_04175 chemotaxis protein CheW K02659 pilI; twitching motility protein PilI
D BER92_04185 chemotaxis protein K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator)
D BER92_04165 pilus assembly protein PilG K02657 pilG; twitching motility two-component system response regulator PilG
D BER92_04170 two-component system response regulator K02658 pilH; twitching motility two-component system response regulator PilH
D BER92_13860 two-component system response regulator K02658 pilH; twitching motility two-component system response regulator PilH
D BER92_04190 chemotaxis protein K06597 chpB; chemosensory pili system protein ChpB (putative protein-glutamate methylesterase)
D BER92_10340 Fis family transcriptional regulator K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D BER92_09415 hybrid sensor histidine kinase/response regulator K10715 rpfC; two-component system, sensor histidine kinase RpfC [EC:2.7.13.3]
D BER92_09405 two-component system response regulator K13815 rpfG; two-component system, response regulator RpfG
D BER92_17960 transcriptional regulator Crp K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D BER92_09420 enoyl-CoA hydratase K13816 rpfF; DSF synthase
D BER92_10715 histidine kinase K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
D BER92_10720 two-component system response regulator K15012 regA; two-component system, response regulator RegA
D BER92_06880 ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D BER92_06885 cytochrome B K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D BER92_06890 ubiquinol cytochrome C oxidoreductase K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D BER92_03275 hypothetical protein K12340 tolC; outer membrane protein
D BER92_06040 polysaccharide biosynthesis protein GumB K01991 wza; polysaccharide biosynthesis/export protein
D BER92_18885 cellulase K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D BER92_18895 cellulase K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D BER92_02580 endoglucanase K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D BER92_12630 cellulase K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D BER92_13180 cellulase K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D BER92_10230 flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis [PATH:xfr04148]
D BER92_01350 arginase K01476 rocF; arginase [EC:3.5.3.1]
D BER92_06880 ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:xfr02024]
D BER92_11170 RNA chaperone Hfq K03666 hfq; host factor-I protein
D BER92_18040 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D BER92_17985 anthranilate/aminodeoxychorismate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D BER92_02160 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D BER92_17485 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D BER92_14600 LuxR family transcriptional regulator K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA
D BER92_09145 P-type conjugative transfer protein TrbJ K20266 trbJ; type IV secretion system protein TrbJ
D BER92_11955 pectate lyase K01728 pel; pectate lyase [EC:4.2.2.2]
D BER92_09420 enoyl-CoA hydratase K13816 rpfF; DSF synthase
D BER92_09425 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BER92_09415 hybrid sensor histidine kinase/response regulator K10715 rpfC; two-component system, sensor histidine kinase RpfC [EC:2.7.13.3]
D BER92_09405 two-component system response regulator K13815 rpfG; two-component system, response regulator RpfG
D BER92_17960 transcriptional regulator Crp K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D BER92_13190 Fur family transcriptional regulator K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D BER92_00945 GTP cyclohydrolase K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D BER92_04495 riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D BER92_19315 membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D BER92_04350 protease K14645 K14645; serine protease [EC:3.4.21.-]
D BER92_04970 peptidase S8 K14645 K14645; serine protease [EC:3.4.21.-]
D BER92_05100 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D BER92_07230 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D BER92_05265 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D BER92_12580 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D BER92_03820 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D BER92_06190 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D BER92_02085 protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D BER92_05905 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D BER92_02295 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:xfr02030]
D BER92_08600 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D BER92_09495 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D BER92_14585 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D BER92_10190 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D BER92_09505 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D BER92_09510 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D BER92_09520 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D BER92_09540 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D BER92_10480 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D BER92_09485 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D BER92_09555 chemotaxis protein K03408 cheW; purine-binding chemotaxis protein CheW
D BER92_09545 Fis family transcriptional regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D BER92_10470 histidine kinase K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D BER92_10475 chemotaxis protein K03414 cheZ; chemotaxis protein CheZ
D BER92_09465 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D BER92_17135 methyltransferase K13924 cheBR; two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61]
D BER92_10240 chemotaxis protein CheW K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D BER92_09470 chemotaxis protein CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D BER92_09475 chemotaxis protein CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D BER92_10370 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D BER92_10400 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D BER92_10405 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D BER92_09570 motC; flagellar motor protein K02556 motA; chemotaxis protein MotA
D BER92_16100 flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA
D BER92_09565 flagellar motor protein MotD K02557 motB; chemotaxis protein MotB
D BER92_16105 flagellar motor protein MotB K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:xfr02040]
D BER92_10360 flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D BER92_10365 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D BER92_10370 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D BER92_10375 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D BER92_10380 flagellum-specific ATP synthase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D BER92_10385 flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ
D BER92_10390 flagellar protein K02414 fliK; flagellar hook-length control protein FliK
D BER92_10395 flagellar basal body protein FliL K02415 fliL; flagellar protein FliL
D BER92_10400 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D BER92_10405 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D BER92_10410 flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ
D BER92_10415 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D BER92_10420 flagellar biogenesis protein K02420 fliQ; flagellar biosynthesis protein FliQ
D BER92_10425 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D BER92_10450 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D BER92_10445 flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D BER92_10235 flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D BER92_10245 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D BER92_10250 flagellar basal body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D BER92_10255 flgD; flagellar basal body rod modification protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D BER92_10260 flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE
D BER92_10265 flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D BER92_10270 flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D BER92_10275 flagellar basal body L-ring protein K02393 flgH; flagellar L-ring protein FlgH
D BER92_10280 flagellar biosynthesis protein FlgI K02394 flgI; flagellar P-ring protein FlgI
D BER92_10285 flgJ; flagellar rod assembly protein/muramidase FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ
D BER92_10290 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D BER92_10295 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D BER92_10300 flagellin K02406 fliC; flagellin
D BER92_10305 flagellar protein K02407 fliD; flagellar hook-associated protein 2
D BER92_10310 flagellar export chaperone FliS K02422 fliS; flagellar secretion chaperone FliS
D BER92_09570 motC; flagellar motor protein K02556 motA; chemotaxis protein MotA
D BER92_16100 flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA
D BER92_09565 flagellar motor protein MotD K02557 motB; chemotaxis protein MotB
D BER92_16105 flagellar motor protein MotB K02557 motB; chemotaxis protein MotB
D BER92_10230 flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D BER92_00925 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D BER92_10340 Fis family transcriptional regulator K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D BER92_10330 RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D BER92_13670 RNA polymerase factor sigma-54 K03092 rpoN; RNA polymerase sigma-54 factor
D BER92_10465 RNA polymerase sigma factor FliA K02405 fliA; RNA polymerase sigma factor FliA
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D BER92_08745 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism [PATH:xfr04980]
D BER92_04760 ATP:cob(I)alamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D BER92_08180 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D BER92_08185 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:xfr01501]
D BER92_18340 signal transduction protein K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D BER92_05575 hypothetical protein K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D BER92_07015 beta-N-acetylhexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D BER92_05710 serine hydrolase K01467 ampC; beta-lactamase class C [EC:3.5.2.6]
D BER92_16935 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D BER92_07580 efflux transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D BER92_16705 efflux transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D BER92_07575 multidrug efflux RND transporter permease K18138 acrB; multidrug efflux pump
D BER92_16700 multidrug transporter AcrB K18138 acrB; multidrug efflux pump
D BER92_03275 hypothetical protein K12340 tolC; outer membrane protein
D BER92_03630 peptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D BER92_02760 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D BER92_03750 cell division protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:xfr01502]
D BER92_18165 D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D BER92_03785 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D BER92_16075 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D BER92_03760 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D BER92_03765 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D BER92_03775 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D BER92_14965 peptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:xfr01503]
D BER92_18480 two-component sensor histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D BER92_18485 DNA-binding response regulator K07660 phoP; two-component system, OmpR family, response regulator PhoP
D BER92_15040 phosphoethanolamine transferase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D BER92_12115 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D BER92_06805 peptidase S1 K04771 degP; serine protease Do [EC:3.4.21.107]
D BER92_02440 dihydroneopterin aldolase K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D BER92_02445 thiol:disulfide interchange protein K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D BER92_07580 efflux transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D BER92_16705 efflux transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D BER92_07575 multidrug efflux RND transporter permease K18138 acrB; multidrug efflux pump
D BER92_16700 multidrug transporter AcrB K18138 acrB; multidrug efflux pump
D BER92_03275 hypothetical protein K12340 tolC; outer membrane protein
D BER92_06375 acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D BER92_12270 hypothetical protein K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:xfr01000]
C 01001 Protein kinases [BR:xfr01001]
D BER92_17730 kinase K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D BER92_15310 phosphate regulon sensor histidine kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D BER92_18480 two-component sensor histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D BER92_03180 histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
D BER92_07420 histidine kinase K08082 algZ; two-component system, LytTR family, sensor histidine kinase AlgZ [EC:2.7.13.3]
D BER92_18605 PAS domain-containing sensor histidine kinase K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D BER92_03930 PAS domain-containing sensor histidine kinase K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3]
D BER92_09540 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D BER92_10480 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D BER92_04185 chemotaxis protein K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator)
D BER92_09415 hybrid sensor histidine kinase/response regulator K10715 rpfC; two-component system, sensor histidine kinase RpfC [EC:2.7.13.3]
D BER92_10715 histidine kinase K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:xfr01009]
D BER92_04550 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D BER92_12660 molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG
D BER92_14145 protein phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
C 01002 Peptidases and inhibitors [BR:xfr01002]
D BER92_14825 signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D BER92_03890 methyltransferase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D BER92_18940 GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D BER92_09090 glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D BER92_18020 gamma-glutamyl-gamma-aminobutyrate hydrolase K07010 K07010; putative glutamine amidotransferase
D BER92_05540 ABC transporter K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D BER92_15360 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D BER92_18910 glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D BER92_02965 iron dicitrate transport regulator FecR K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D BER92_15850 glutamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D BER92_06500 asnB; asparagine synthase B K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D BER92_06700 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D BER92_00030 hypothetical protein K07052 K07052; CAAX protease family protein
D BER92_15815 oligopeptidase A K01414 prlC; oligopeptidase A [EC:3.4.24.70]
D BER92_17780 dipeptidyl carboxypeptidase II K01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5]
D BER92_12410 peptidase K07386 pepO; putative endopeptidase [EC:3.4.24.-]
D BER92_12415 peptidase M13 K07386 pepO; putative endopeptidase [EC:3.4.24.-]
D BER92_17085 peptidase M13 K07386 pepO; putative endopeptidase [EC:3.4.24.-]
D BER92_14965 peptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D BER92_18165 D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D BER92_11360 hypothetical protein K17733 cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]
D BER92_02560 peptidase M16 K07263 pqqL; zinc protease [EC:3.4.24.-]
D BER92_01400 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D BER92_04300 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D BER92_14565 peptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D BER92_06495 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D BER92_16950 endopeptidase K21472 lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]
D BER92_06475 type I methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D BER92_03545 Xaa-Pro dipeptidase K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9]
D BER92_06230 X-Pro dipeptidase K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9]
D BER92_03540 Xaa-Pro aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D BER92_11185 hflB; ATP-dependent metalloprotease K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D BER92_12080 zinc metalloprotease HtpX K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D BER92_15300 peptidase K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-]
D BER92_06400 RIP metalloprotease RseP K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D BER92_15345 peptidase K23743 E3.4.24.33; peptidyl-Asp metalloendopeptidase [EC:3.4.24.33]
D BER92_13795 hypothetical protein K23743 E3.4.24.33; peptidyl-Asp metalloendopeptidase [EC:3.4.24.33]
D BER92_06805 peptidase S1 K04771 degP; serine protease Do [EC:3.4.21.107]
D BER92_01430 heat-shock protein K04772 degQ; serine protease DegQ [EC:3.4.21.-]
D BER92_14610 endoproteinase ArgC K01337 E3.4.21.50; lysyl endopeptidase [EC:3.4.21.50]
D BER92_04350 protease K14645 K14645; serine protease [EC:3.4.21.-]
D BER92_04970 peptidase S8 K14645 K14645; serine protease [EC:3.4.21.-]
D BER92_02640 prolyl oligopeptidase K01322 PREP; prolyl oligopeptidase [EC:3.4.21.26]
D BER92_02660 oligopeptidase B K01354 ptrB; oligopeptidase B [EC:3.4.21.83]
D BER92_02785 serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D BER92_14360 ATP-dependent Clp endopeptidase, proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D BER92_14370 endopeptidase La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D BER92_11050 repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D BER92_14235 repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D BER92_06965 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D BER92_04895 prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D BER92_00120 peptidase S41 K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D BER92_02830 tail-specific protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D BER92_06515 penicillin acylase K01434 pac; penicillin G amidase [EC:3.5.1.11]
D BER92_00175 signal peptide peptidase SppA K04773 sppA; protease IV [EC:3.4.21.-]
D BER92_06280 peptidase S53 K08677 kscP; kumamolisin [EC:3.4.21.123]
D BER92_12420 rhomboid family intramembrane serine protease K07059 K07059; rhomboid family protein
D BER92_02685 HslU--HslV peptidase proteolytic subunit K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D BER92_12635 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D BER92_12735 pmbA; metalloprotease PmbA K03592 pmbA; PmbA protein
D BER92_12745 tldD; metalloprotease TldD K03568 tldD; TldD protein
D BER92_13850 protease modulator HflC K04087 hflC; modulator of FtsH protease HflC
D BER92_13855 HflK protein K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:xfr01003]
D BER92_17605 starch synthase K00703 glgA; starch synthase [EC:2.4.1.21]
D BER92_05785 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D BER92_04135 penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D BER92_03630 peptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D BER92_02595 glucan biosynthesis glucosyltransferase H K03669 mdoH; membrane glycosyltransferase [EC:2.4.1.-]
D BER92_06050 undecaprenyl-phosphate glucose phosphotransferase K13656 gumD; undecaprenyl-phosphate glucose phosphotransferase [EC:2.7.8.31]
D BER92_06095 polysaccharide biosynthesis protein GumM K13660 gumM; beta-1,4-glucosyltransferase [EC:2.4.1.-]
D BER92_06070 glycosyl transferase family 1 K13657 gumH; alpha-1,3-mannosyltransferase [EC:2.4.1.252]
D BER92_06085 glycosyl transferase family 1 K13659 gumK; 2-beta-glucuronyltransferase [EC:2.4.1.264]
D BER92_06075 GDP-mannose--glycolipid 4-beta-D-mannosyltransferase K13658 gumI; beta-1,4-mannosyltransferase [EC:2.4.1.251]
D BER92_03985 alpha,alpha-trehalose-phosphate synthase (UDP-forming) K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:xfr01005]
D BER92_06375 acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D BER92_06370 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D BER92_03805 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D BER92_06385 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D BER92_15335 UDP-2,3-diacylglucosamine diphosphatase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D BER92_11500 tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D BER92_00935 lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D BER92_03265 lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D BER92_17690 aspartyl beta-hydroxylase K12979 lpxO; beta-hydroxylase [EC:1.14.11.-]
D BER92_02790 hypothetical protein K09953 lpxR; lipid A 3-O-deacylase [EC:3.1.1.-]
D BER92_03270 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D BER92_15040 phosphoethanolamine transferase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D BER92_14125 3-deoxy-D-manno-octulosonic acid kinase K11211 kdkA; 3-deoxy-D-manno-octulosonic acid kinase [EC:2.7.1.166]
D BER92_08740 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D BER92_11495 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D BER92_13650 phenylphosphate carboxylase subunit delta K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D BER92_13645 D-arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D BER92_00970 polymerase K02847 waaL; O-antigen ligase [EC:2.4.99.26]
D BER92_14130 ADP-heptose--LPS heptosyltransferase K12982 opsX; heptosyltransferase I [EC:2.4.-.-]
D BER92_05790 glycosyl transferase family 2 K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-]
D BER92_15630 ribonuclease III K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:xfr01011]
D BER92_13635 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D BER92_10695 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D BER92_03780 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D BER92_03755 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D BER92_03785 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D BER92_16075 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D BER92_03765 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D BER92_03775 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D BER92_18585 undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D BER92_15330 phosphoesterase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D BER92_14840 murein biosynthesis integral membrane protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase
D BER92_03630 peptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D BER92_04135 penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D BER92_02760 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D BER92_03750 cell division protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D BER92_02785 serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D BER92_05785 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D BER92_18165 D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D BER92_14965 peptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D BER92_16950 endopeptidase K21472 lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]
D BER92_11360 hypothetical protein K17733 cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]
D BER92_16185 lytic murein transglycosylase K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D BER92_02775 lytic murein transglycosylase B K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D BER92_14510 murein transglycosylase K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D BER92_07130 lytic transglycosylase K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D BER92_14170 lytic transglycosylase K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D BER92_13985 aminodeoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D BER92_02780 hypothetical protein K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D BER92_12115 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:xfr01004]
D BER92_14010 [acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D BER92_17390 malonate decarboxylase subunit epsilon K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D BER92_14015 3-oxoacyl-ACP synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D BER92_01750 beta-ketoacyl-[acyl-carrier-protein] synthase II K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D BER92_15805 beta-ketoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D BER92_13995 beta-ketoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D BER92_01730 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D BER92_14005 fabG; 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D BER92_15800 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D BER92_06380 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D BER92_01940 trans-2-enoyl-CoA reductase K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D BER92_04630 arylesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D BER92_14885 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D BER92_12225 delta 9 acyl-lipid fatty acid desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D BER92_01560 acyl-CoA desaturase K22769 desA3; NADPH-dependent stearoyl-CoA 9-desaturase [EC:1.14.19.-]
D BER92_01150 acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D BER92_09425 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BER92_00400 glycerol-3-phosphate 1-O-acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D BER92_01695 acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins [BR:xfr01008]
D BER92_18470 non-ribosomal peptide synthetase K02364 entF; L-serine---[L-seryl-carrier protein] ligase [EC:6.3.2.14 6.2.1.72]
C 01006 Prenyltransferases [BR:xfr01006]
D BER92_12720 geranyl transferase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D BER92_13365 octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D BER92_06415 di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D BER92_11175 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D BER92_17645 4-hydroxybenzoate polyprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D BER92_18260 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
C 01007 Amino acid related enzymes [BR:xfr01007]
D BER92_13195 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D BER92_04835 glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D BER92_12085 tRNA glutamyl-Q(34) synthetase GluQRS K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D BER92_18320 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D BER92_01335 tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D BER92_11900 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D BER92_18425 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D BER92_12190 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D BER92_14830 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D BER92_04290 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D BER92_12820 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D BER92_09400 lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D BER92_14495 aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D BER92_08435 asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D BER92_09190 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D BER92_18930 glycine--tRNA ligase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D BER92_18925 glycine--tRNA ligase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D BER92_12510 serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D BER92_15525 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D BER92_05995 threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D BER92_11035 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D BER92_06015 phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D BER92_06020 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D BER92_03095 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D BER92_01975 aromatic amino acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D BER92_08890 aminotransferase K14287 ybdL; methionine transaminase [EC:2.6.1.88]
D BER92_09210 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D BER92_02255 glycine C-acetyltransferase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D BER92_17660 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D BER92_03475 acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D BER92_05675 adenosylmethionine--8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D BER92_03480 glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D BER92_04955 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D BER92_18005 aminotransferase class V K03430 phnW; 2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37]
D BER92_12535 phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:xfr00194]
D BER92_15890 F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D BER92_15895 F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D BER92_15900 F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D BER92_15905 F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D BER92_15910 F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D BER92_15915 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D BER92_15920 ATP F0F1 synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D BER92_15925 F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:xfr03000]
D BER92_03375 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D BER92_04790 transcriptional regulator K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator
D BER92_04875 DNA-binding transcriptional regulator OxyR K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D BER92_16760 CysB family transcriptional regulator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D BER92_07170 transcriptional regulator K27042 trpI; LysR family transcriptional regulator, trpBA operon transcriptional activator
D BER92_17740 DeoR family transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D BER92_02960 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BER92_18765 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BER92_18995 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BER92_08160 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BER92_08935 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BER92_12545 LacI family transcriptional regulator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D BER92_08535 histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D BER92_02950 GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D BER92_03285 TetR family transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor
D BER92_01550 TetR family transcriptional regulator K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D BER92_18740 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BER92_14600 LuxR family transcriptional regulator K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA
D BER92_06600 MarR family transcriptional regulator K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB
D BER92_07950 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D BER92_13190 Fur family transcriptional regulator K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D BER92_17960 transcriptional regulator Crp K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D BER92_06755 Cro/Cl family transcriptional regulator K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator
D BER92_11740 transcriptional regulator MntR K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D BER92_16935 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D BER92_01260 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D BER92_16295 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D BER92_13945 propionate catabolism operon regulatory protein PrpR K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein
D BER92_10340 Fis family transcriptional regulator K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D BER92_00620 hypothetical protein K07729 K07729; putative transcriptional regulator
D BER92_18315 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D BER92_02980 regulator K23239 frmR; FrmR/RcnR family transcriptional regulator, repressor of frmRAB operon
D BER92_08930 cell division protein BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D BER92_18370 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D BER92_19445 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D BER92_07960 heat-inducible transcriptional repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D BER92_10965 transcriptional regulator K03567 gcvR; glycine cleavage system transcriptional repressor
D BER92_04870 nucleoside diphosphate kinase regulator K06140 rnk; regulator of nucleoside diphosphate kinase
D BER92_09100 hypothetical protein K07733 alpA; prophage regulatory protein
D BER92_13425 hypothetical protein K07735 algH; putative transcriptional regulator
D BER92_11915 RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D BER92_04485 transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D BER92_03735 cell division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:xfr03021]
D BER92_05285 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D BER92_05130 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D BER92_05135 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D BER92_03585 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D BER92_00925 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D BER92_08660 RNA polymerase subunit sigma-70 K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D BER92_12215 RNA polymerase subunit sigma K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D BER92_06795 RNA polymerase sigma factor RpoE K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D BER92_00210 RNA polymerase factor sigma-32 K03089 rpoH; RNA polymerase sigma-32 factor
D BER92_10330 RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D BER92_13670 RNA polymerase factor sigma-54 K03092 rpoN; RNA polymerase sigma-54 factor
D BER92_10465 RNA polymerase sigma factor FliA K02405 fliA; RNA polymerase sigma factor FliA
D BER92_07320 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
D BER92_02385 N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
D BER92_05105 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D BER92_06895 stringent starvation protein A K03599 sspA; stringent starvation protein A
D BER92_06900 ClpXP protease specificity-enhancing factor K03600 sspB; stringent starvation protein B
D BER92_17365 IcfG protein K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
D BER92_11915 RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D BER92_09380 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D BER92_12350 transcription elongation factor GreB K04760 greB; transcription elongation factor GreB
D BER92_00245 transcription termination factor Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:xfr03019]
D BER92_09725 ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D BER92_12760 ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D BER92_06975 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D BER92_08210 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D BER92_12015 ribonuclease K01167 rnaSA; ribonuclease T1 [EC:4.6.1.24]
D BER92_11730 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D BER92_00235 ATP-dependent RNA helicase RhlB K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D BER92_15740 RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D BER92_00515 RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D BER92_13075 ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D BER92_04085 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D BER92_08745 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D BER92_07345 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D BER92_00245 transcription termination factor Rho K03628 rho; transcription termination factor Rho
D BER92_07970 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D BER92_17505 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D BER92_11170 RNA chaperone Hfq K03666 hfq; host factor-I protein
D BER92_15315 RNA degradosome polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D BER92_05010 polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D BER92_10845 polynucleotide adenylyltransferase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D BER92_17920 RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D BER92_11030 carbon storage regulator K03563 csrA; carbon storage regulator
D BER92_13690 RNase adaptor protein RapZ K06958 rapZ; RNase adapter protein RapZ
D BER92_04095 ATP-dependent RNA helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
D BER92_16525 ATP-dependent helicase HrpB K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6]
C 03041 Spliceosome
C 03011 Ribosome [BR:xfr03011]
D BER92_09010 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D BER92_06440 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D BER92_05195 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D BER92_05280 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D BER92_05250 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D BER92_08445 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D BER92_05145 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D BER92_05235 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D BER92_17935 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D BER92_05160 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D BER92_05275 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D BER92_05140 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D BER92_05270 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D BER92_05230 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D BER92_07340 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D BER92_05925 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D BER92_05210 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D BER92_08450 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D BER92_05185 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D BER92_14845 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D BER92_18230 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D BER92_05115 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D BER92_05180 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D BER92_05165 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D BER92_05170 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D BER92_05225 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D BER92_05240 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D BER92_08455 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D BER92_05120 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D BER92_05110 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D BER92_05125 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D BER92_17940 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D BER92_05215 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D BER92_05260 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D BER92_05200 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D BER92_05290 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D BER92_05245 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D BER92_05940 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D BER92_06010 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D BER92_14860 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D BER92_05190 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D BER92_05175 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D BER92_05220 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D BER92_14855 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D BER92_01210 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D BER92_05205 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D BER92_05255 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D BER92_03615 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D BER92_14020 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D BER92_01215 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D BER92_19325 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D BER92_06005 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D BER92_05060 50S ribosomal protein L25/general stress protein Ctc K02897 RP-L25; large subunit ribosomal protein L25
D BER92_00450 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D BER92_00430 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D BER92_00445 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:xfr03009]
D BER92_06975 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D BER92_17730 kinase K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D BER92_11730 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D BER92_06980 GTPase Era K03595 era; GTPase
D BER92_14850 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
D BER92_11915 RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D BER92_07320 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
D BER92_02385 N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
D BER92_05105 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D BER92_16030 16S rRNA pseudouridine(516) synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D BER92_04735 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D BER92_00980 16S rRNA (cytosine(967)-C(5))-methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D BER92_16035 16S rRNA methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D BER92_12655 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D BER92_05670 16S rRNA (uracil(1498)-N(3))-methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D BER92_01195 16S rRNA (guanine(527)-N(7))-methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D BER92_03740 16S rRNA (cytosine(1402)-N(4))-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D BER92_03705 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D BER92_08215 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D BER92_11190 23S rRNA methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D BER92_12775 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D BER92_19285 oxidoreductase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D BER92_13225 hypothetical protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D BER92_08355 23S rRNA (guanine(2445)-N(2))/(guanine(2069)-N(7))-methyltransferase K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D BER92_04820 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D BER92_10090 23S rRNA (adenine(2503)-C(2))-methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D BER92_06995 23S rRNA (uracil(1939)-C(5))-methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D BER92_08910 pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D BER92_02245 pseudouridylate synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D BER92_09720 23S rRNA pseudouridylate synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D BER92_03955 RNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D BER92_16545 pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D BER92_04070 RNA-binding protein K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
D BER92_13060 23S rRNA pseudouridine synthase F K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
D BER92_02150 RNA methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
D BER92_15505 ribosomal-protein-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D BER92_04200 alanine acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
D BER92_02335 ribosomal protein S6 modification protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
D BER92_05930 ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM
D BER92_12365 rimO; ribosomal protein S12 methylthiotransferase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D BER92_16275 ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D BER92_08570 ribosomal protein L3 N(5)-glutamine methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
D BER92_08055 transcriptional regulator K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
D BER92_09725 ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D BER92_12760 ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D BER92_13420 Holliday junction DNA helicase RuvA K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D BER92_12030 ATP-dependent RNA helicase DbpA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
D BER92_13075 ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D BER92_03130 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D BER92_10065 ribosome biogenesis GTPase Der K03977 engA; GTPase
D BER92_11165 GTPase HflX K03665 hflX; GTPase
D BER92_01025 tRNA threonylcarbamoyladenosine biosynthesis protein RimN K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D BER92_03590 bifunctional GTP diphosphokinase/guanosine-3',5'-bis(diphosphate) 3'-diphosphatase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D BER92_07330 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D BER92_07315 ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP
D BER92_13085 RNA-binding protein K14761 rlbA; ribosome-associated protein
D BER92_12800 ribosome silencing factor K09710 ybeB; ribosome-associated protein
D BER92_06860 rRNA maturation RNase YbeY K07042 ybeY; probable rRNA maturation factor
D BER92_11195 RNA-binding protein K07574 yhbY; RNA-binding protein
D BER92_12740 hypothetical protein K09889 yjgA; ribosome-associated protein
D BER92_13675 ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor
D BER92_05070 redox-regulated ATPase YchF K06942 ychF; ribosome-binding ATPase
D BER92_14025 hypothetical protein K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:xfr03016]
D BER92_12015 ribonuclease K01167 rnaSA; ribonuclease T1 [EC:4.6.1.24]
D BER92_16175 multifunctional CCA tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D BER92_13195 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D BER92_15525 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D BER92_14830 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D BER92_12820 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D BER92_12190 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D BER92_04835 glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D BER92_18425 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D BER92_09400 lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D BER92_14495 aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D BER92_11035 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D BER92_08435 asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D BER92_05995 threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D BER92_12510 serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D BER92_11900 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D BER92_04290 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D BER92_09190 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D BER92_06015 phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D BER92_06020 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D BER92_18320 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D BER92_01335 tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D BER92_00930 D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D BER92_14070 histidine triad nucleotide-binding protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D BER92_05360 tRNA (guanosine(46)-N7)-methyltransferase TrmB K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D BER92_07145 tRNA pseudouridine(38-40) synthase TruA K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D BER92_07335 tRNA pseudouridine(55) synthase TruB K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D BER92_08765 tRNA pseudouridine(13) synthase TruD K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D BER92_16825 hypothetical protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D BER92_01025 tRNA threonylcarbamoyladenosine biosynthesis protein RimN K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D BER92_11175 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D BER92_19310 tRNA uridine(34) 5-carboxymethylaminomethyl synthesis GTPase MnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D BER92_17715 tRNA uridine(34) 5-carboxymethylaminomethyl synthesis enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D BER92_05685 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D BER92_19320 ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D BER92_03715 rnpB; RNase P RNA component class A K01978 rnpB; M1 RNA
D BER92_08230 ribonuclease T K03683 rnt; ribonuclease T [EC:3.1.13.-]
D BER92_03570 ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D BER92_06940 ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D BER92_04470 energy-dependent translational throttle protein EttA K06020 ettA; energy-dependent translational throttle protein EttA
D BER92_18930 glycine--tRNA ligase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D BER92_18925 glycine--tRNA ligase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D BER92_12085 tRNA glutamyl-Q(34) synthetase GluQRS K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D BER92_04975 aminoacyl-tRNA deacylase K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D BER92_11735 tRNA-specific adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D BER92_18495 tRNA dihydrouridine(20/20a) synthase DusA K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D BER92_04595 tRNA dihydrouridine synthase DusB K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D BER92_06870 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D BER92_05935 tRNA (guanosine(37)-N1)-methyltransferase TrmD K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D BER92_02150 RNA methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
D BER92_12000 RNA methyltransferase K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
D BER92_02110 tRNA (uridine(34)/cytosine(34/5-carboxymethylaminomethyluridine(34)-2'-O))-methyltransferase TrmL K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D BER92_10180 tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D BER92_18990 tRNA 2-thiocytidine(32) synthetase TtcA K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D BER92_08440 Fe-S cluster assembly protein HesB K13628 iscA; iron-sulfur cluster assembly protein
D BER92_11575 aminomethyltransferase K06980 ygfZ; tRNA-modifying protein YgfZ
D BER92_12590 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D BER92_04055 7-cyano-7-deazaguanine synthase QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D BER92_15745 6-carboxytetrahydropterin synthase QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D BER92_14420 7-carboxy-7-deazaguanine synthase QueE K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D BER92_00280 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D BER92_12130 tRNA epoxyqueuosine(34) reductase QueG K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D BER92_12585 tRNA guanosine(34) transglycosylase Tgt K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D BER92_12710 tRNA lysidine(34) synthetase TilS K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D BER92_04150 tRNA N6-adenosine(37)-N6-threonylcarbamoyltransferase complex dimerization subunit TsaB K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D BER92_18225 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D BER92_12120 tRNA (N6-adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase TsaE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D BER92_06670 tRNA threonylcarbamoyladenosine dehydratase K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D BER92_08210 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D BER92_07345 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:xfr03012]
D BER92_07325 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D BER92_06000 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D BER92_14515 ABC transporter ATP-binding protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D BER92_06435 translation elongation factor Ts K02357 tsf; elongation factor Ts
D BER92_05090 translation elongation factor Tu K02358 tuf; elongation factor Tu
D BER92_05155 translation elongation factor Tu K02358 tuf; elongation factor Tu
D BER92_05150 translation elongation factor G K02355 fusA; elongation factor G
D BER92_05025 peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D BER92_06420 ribosome recycling factor K02838 frr; ribosome recycling factor
D BER92_04890 protein-(glutamine-N5) methyltransferase, release factor-specific K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D BER92_05065 aminoacyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D BER92_10160 translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D BER92_09310 elongation factor P-like protein YeiP K02356 efp; elongation factor P
D BER92_11990 elongation factor P K02356 efp; elongation factor P
D BER92_08475 EF-P lysine aminoacylase GenX K04568 epmA; elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-]
D BER92_11995 EF-P beta-lysylation protein EpmB K19810 epmB; L-lysine 2,3-aminomutase [EC:5.4.3.-]
D BER92_09395 peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
D BER92_05810 peptide chain release factor 3 K02837 prfC; peptide chain release factor 3
D BER92_17795 peptidyl-tRNA hydrolase K15034 yaeJ; ribosome-associated protein
C 03110 Chaperones and folding catalysts [BR:xfr03110]
D BER92_10165 ATP-dependent Clp protease ATP-binding subunit ClpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
D BER92_15160 ATP-dependent chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D BER92_14365 ATP-dependent protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D BER92_02690 HslU--HslV peptidase ATPase subunit K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D BER92_12660 molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG
D BER92_07970 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D BER92_12335 heat-shock protein Hsp70 K04046 yegD; hypothetical chaperone protein
D BER92_17505 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D BER92_07975 molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ
D BER92_13865 cytochrome C biogenesis protein K05516 cbpA; curved DNA-binding protein
D BER92_05780 heat-shock protein Hsp33 K04083 hslO; molecular chaperone Hsp33
D BER92_07965 nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE
D BER92_13870 heat-shock protein K13993 HSP20; HSP20 family protein
D BER92_05950 RNA-binding protein K04762 hslR; ribosome-associated heat shock protein Hsp15
D BER92_17510 co-chaperone GroES K04078 groES; chaperonin GroES
D BER92_06805 peptidase S1 K04771 degP; serine protease Do [EC:3.4.21.107]
D BER92_11185 hflB; ATP-dependent metalloprotease K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D BER92_15925 F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D BER92_06445 pilus assembly protein K07346 fimC; fimbrial chaperone protein
D BER92_06465 pilus assembly protein K07346 fimC; fimbrial chaperone protein
D BER92_02085 protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D BER92_14875 hypothetical protein K09796 pccA; periplasmic copper chaperone A
D BER92_04350 protease K14645 K14645; serine protease [EC:3.4.21.-]
D BER92_04970 peptidase S8 K14645 K14645; serine protease [EC:3.4.21.-]
D BER92_13765 beta-hexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D BER92_02185 peptidylprolyl isomerase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D BER92_14395 peptidylprolyl isomerase K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D BER92_08135 peptidylprolyl isomerase K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D BER92_09750 peptidylprolyl isomerase K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D BER92_12445 peptidylprolyl isomerase K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D BER92_04745 molecular chaperone SurA K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D BER92_00240 thioredoxin K03671 TXN; thioredoxin
D BER92_01820 thiol reductase thioredoxin K03671 TXN; thioredoxin
D BER92_12830 thioredoxin K05838 ybbN; putative thioredoxin
D BER92_15290 glutaredoxin 3 K03676 grxC; glutaredoxin 3
D BER92_07390 monothiol glutaredoxin, Grx4 family K07390 grxD; monothiol glutaredoxin
D BER92_03075 monothiol glutaredoxin, Grx4 family K07390 grxD; monothiol glutaredoxin
D BER92_02440 dihydroneopterin aldolase K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D BER92_02445 thiol:disulfide interchange protein K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D BER92_05295 disulfide bond formation protein B K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9]
D BER92_04330 hypothetical protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D BER92_08855 thiol:disulfide interchange protein K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
C 04131 Membrane trafficking [BR:xfr04131]
D BER92_10095 nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D BER92_16780 fructose-bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D BER92_16890 type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D BER92_13280 gpmA; phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D BER92_16785 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D BER92_12660 molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system
C 03051 Proteasome [BR:xfr03051]
D BER92_12660 molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:xfr03032]
D BER92_14155 ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D BER92_14375 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D BER92_06025 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D BER92_09015 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
D BER92_00005 chromosomal replication initiation protein DnaA K02313 dnaA; chromosomal replication initiator protein
D BER92_06710 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D BER92_18245 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D BER92_13355 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D BER92_06360 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D BER92_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D BER92_04295 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D BER92_12810 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D BER92_13980 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D BER92_14150 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D BER92_14085 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D BER92_06365 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D BER92_01640 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D BER92_08470 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D BER92_13590 DnaA regulatory inactivator Hda K10763 hda; DnaA-homolog protein
D BER92_08495 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D BER92_00025 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D BER92_06535 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D BER92_08725 DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D BER92_01020 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:xfr03036]
D BER92_06975 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D BER92_16780 fructose-bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D BER92_15530 DNA-binding protein K03746 hns; DNA-binding protein H-NS
D BER92_14375 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D BER92_06025 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D BER92_09015 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
D BER92_13865 cytochrome C biogenesis protein K05516 cbpA; curved DNA-binding protein
D BER92_00005 chromosomal replication initiation protein DnaA K02313 dnaA; chromosomal replication initiator protein
D BER92_04090 DNA starvation/stationary phase protection protein K04047 dps; starvation-inducible DNA-binding protein
D BER92_16295 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D BER92_11170 RNA chaperone Hfq K03666 hfq; host factor-I protein
D BER92_18740 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BER92_08460 chromosome segregation protein SMC K03529 smc; chromosome segregation protein
D BER92_08920 rifampin ADP-ribosyl transferase K05896 scpA; segregation and condensation protein A
D BER92_08915 SMC-Scp complex subunit ScpB K06024 scpB; segregation and condensation protein B
D BER92_03795 cell division protein FtsA K03590 ftsA; cell division protein FtsA
D BER92_08750 cell division protein FtsB K05589 ftsB; cell division protein FtsB
D BER92_00230 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D BER92_03750 cell division protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D BER92_10140 cell division protein FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D BER92_03745 cell division protein FtsL K03586 ftsL; cell division protein FtsL
D BER92_03790 cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ
D BER92_03770 cell division protein FtsW K03588 ftsW; cell division protein FtsW
D BER92_00225 cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D BER92_03800 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D BER92_08465 cell division protein ZipA K03528 zipA; cell division protein ZipA
D BER92_03525 cell division ZapA family protein K09888 zapA; cell division protein ZapA
D BER92_03530 TIGR02449 family protein K09892 zapB; cell division protein ZapB
D BER92_16585 ATPase K06916 zapE; cell division protein ZapE
D BER92_12115 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D BER92_07580 efflux transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D BER92_16705 efflux transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D BER92_15000 septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D BER92_15005 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D BER92_15010 cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D BER92_02745 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D BER92_02750 rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D BER92_02755 rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD
D BER92_02765 rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA
D BER92_18365 chromosome partitioning protein K03496 parA; chromosome partitioning protein
D BER92_18675 CMP-binding protein K03496 parA; chromosome partitioning protein
D BER92_19440 hypothetical protein K03496 parA; chromosome partitioning protein
D BER92_19535 hypothetical protein K03496 parA; chromosome partitioning protein
D BER92_09560 chromosome partitioning protein ParA K03496 parA; chromosome partitioning protein
D BER92_18370 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D BER92_19445 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D BER92_06535 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D BER92_08725 DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D BER92_17715 tRNA uridine(34) 5-carboxymethylaminomethyl synthesis enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D BER92_01195 16S rRNA (guanine(527)-N(7))-methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D BER92_02680 tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC
D BER92_04325 site-specific tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD
D BER92_12395 sodium:proton antiporter K03593 mrp; ATP-binding protein involved in chromosome partitioning
D BER92_03920 cell filamentation protein Fic K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D BER92_02430 YihA family ribosome biogenesis GTP-binding protein K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:xfr03400]
D BER92_13120 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D BER92_06715 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D BER92_00215 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D BER92_06915 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D BER92_06185 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D BER92_08295 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D BER92_16900 endonuclease K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D BER92_11705 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BER92_03830 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BER92_18410 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D BER92_07010 deoxyribodipyrimidine photolyase K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
D BER92_15955 DNA-deoxyinosine glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
D BER92_17065 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D BER92_14970 DNA-3-methyladenine glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D BER92_13430 DNA-3-methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D BER92_14180 DNA-formamidopyrimidine glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D BER92_18350 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D BER92_01170 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D BER92_09390 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D BER92_08470 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D BER92_01640 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D BER92_14865 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D BER92_07690 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
D BER92_11480 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D BER92_01230 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D BER92_05130 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D BER92_05135 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D BER92_05285 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D BER92_03585 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D BER92_13235 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D BER92_13240 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D BER92_12110 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D BER92_08385 exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D BER92_12135 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D BER92_12715 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D BER92_06360 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D BER92_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D BER92_04295 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D BER92_12810 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D BER92_13980 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D BER92_14150 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D BER92_14085 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D BER92_13355 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D BER92_19190 exodeoxyribonuclease V subunit beta K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D BER92_19195 exodeoxyribonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D BER92_19185 exodeoxyribonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D BER92_11045 recombinase RecA K03553 recA; recombination protein RecA
D BER92_14470 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D BER92_14460 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D BER92_14475 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D BER92_00195 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D BER92_14785 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D BER92_00020 DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF
D BER92_03600 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D BER92_06985 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D BER92_14075 recombination protein RecR K06187 recR; recombination protein RecR
D BER92_07955 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D BER92_18985 recombination-associated protein RdgC K03554 rdgC; recombination associated protein RdgC
D BER92_16650 subtype I-F CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1
D BER92_07125 ATP-binding protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
D BER92_08495 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D BER92_00025 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D BER92_01020 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D BER92_14375 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D BER92_16295 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D BER92_06025 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D BER92_09015 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
D BER92_04085 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D BER92_15530 DNA-binding protein K03746 hns; DNA-binding protein H-NS
D BER92_15790 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D BER92_11050 repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D BER92_14235 repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D BER92_14230 CDP-6-deoxy-delta-3,4-glucoseen reductase K14160 imuA; protein ImuA
D BER92_14225 DNA repair nucleotidyltransferase K14161 imuB; protein ImuB
D BER92_14220 dnaE2; error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D BER92_15460 damage-inducible protein D K14623 dinD; DNA-damage-inducible protein D
D BER92_11040 recombination regulator RecX K03565 recX; regulatory protein
D BER92_00340 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D BER92_18520 ATP-dependent DNA helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D BER92_04145 helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D BER92_06910 ATP-dependent DNA helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D BER92_07040 DNA ligase-associated DEXH box helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D BER92_01805 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D BER92_01810 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:xfr03029]
D BER92_06885 cytochrome B K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D BER92_07325 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D BER92_06000 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D BER92_06435 translation elongation factor Ts K02357 tsf; elongation factor Ts
D BER92_05090 translation elongation factor Tu K02358 tuf; elongation factor Tu
D BER92_05155 translation elongation factor Tu K02358 tuf; elongation factor Tu
D BER92_05150 translation elongation factor G K02355 fusA; elongation factor G
D BER92_06980 GTPase Era K03595 era; GTPase
D BER92_18320 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D BER92_12820 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D BER92_14495 aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D BER92_18425 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D BER92_13355 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D BER92_06395 outer membrane protein assembly factor BamA K07277 SAM50; outer membrane protein insertion porin family
D BER92_07970 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D BER92_07965 nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE
D BER92_17505 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D BER92_17510 co-chaperone GroES K04078 groES; chaperonin GroES
D BER92_07975 molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ
D BER92_16825 hypothetical protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D BER92_07390 monothiol glutaredoxin, Grx4 family K07390 grxD; monothiol glutaredoxin
D BER92_03075 monothiol glutaredoxin, Grx4 family K07390 grxD; monothiol glutaredoxin
D BER92_12395 sodium:proton antiporter K03593 mrp; ATP-binding protein involved in chromosome partitioning
D BER92_18260 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D BER92_18290 cytochrome c oxidase assembly protein K02258 COX11; cytochrome c oxidase assembly protein subunit 11
D BER92_18265 cytochrome oxidase assembly protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D BER92_19315 membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D BER92_18275 hypothetical protein K14998 SURF1; surfeit locus 1 family protein
D BER92_08565 hypothetical protein K07152 SCO1; protein SCO1
D BER92_12660 molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:xfr02000]
D BER92_11505 lipid A export permease/ATP-binding protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D BER92_03100 peptidase C39 K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D BER92_05540 ABC transporter K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D BER92_13025 multidrug ABC transporter ATP-binding protein K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump
D BER92_06625 ABC transporter ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D BER92_08020 ABC transporter ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D BER92_17200 ABC transporter K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D BER92_12025 ABC transporter ATP-binding protein K15738 uup; ABC transport system ATP-binding/permease protein
D BER92_02260 sulfate transporter subunit K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D BER92_02265 sulfate ABC transporter permease subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D BER92_02270 sulfate ABC transporter permease subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D BER92_02275 sulfate ABC transporter ATP-binding protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D BER92_16910 molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D BER92_16915 molybdate ABC transporter permease K02018 modB; molybdate transport system permease protein
D BER92_16920 molybdenum ABC transporter ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D BER92_03185 ABC transporter substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D BER92_07525 spermidine/putrescine ABC transporter substrate-binding protein PotF K11073 potF; putrescine transport system substrate-binding protein
D BER92_07555 putrescine ABC transporter permease PotI K11074 potI; putrescine transport system permease protein
D BER92_07550 putrescine ABC transporter permease PotH K11075 potH; putrescine transport system permease protein
D BER92_07545 potG; putrescine transporter ATP-binding subunit K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D BER92_18720 amino acid ABC transporter permease K05845 opuC; osmoprotectant transport system substrate-binding protein
D BER92_18725 ABC transporter ATP-binding protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D BER92_11580 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D BER92_19210 outer membrane lipid asymmetry maintenance protein MlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D BER92_15550 ABC transporter substrate-binding protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D BER92_19205 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D BER92_15540 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D BER92_19200 ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D BER92_15545 ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D BER92_15555 ABC transporter K18480 linN; cholesterol transport system auxiliary component
D BER92_19215 organic solvent ABC transporter K07323 mlaC; phospholipid transport system substrate-binding protein
D BER92_19220 anti-sigma B factor antagonist K07122 mlaB; phospholipid transport system transporter-binding protein
D BER92_08950 ABC transporter substrate-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D BER92_08955 sugar ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein
D BER92_08960 sugar ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein
D BER92_08255 phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D BER92_08265 phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D BER92_08250 phosphate ABC transporter permease subunit PstC K02037 pstC; phosphate transport system permease protein
D BER92_08245 phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein
D BER92_08240 phosphate ABC transporter ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D BER92_15970 methionine ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D BER92_15975 metal ABC transporter permease K02072 metI; D-methionine transport system permease protein
D BER92_15980 methionine ABC transporter ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D BER92_18735 ABC transporter ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D BER92_15685 ABC transporter K09690 wzm; homopolymeric O-antigen transport system permease protein
D BER92_15680 ABC transporter ATP-binding protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D BER92_04305 LPS export ABC transporter permease LptF K07091 lptF; lipopolysaccharide export system permease protein
D BER92_04310 LPS export ABC transporter permease LptG K11720 lptG; lipopolysaccharide export system permease protein
D BER92_13665 LPS export ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D BER92_00635 sodium ABC transporter permease K09696 natB; sodium transport system permease protein
D BER92_00630 ABC transporter ATP-binding protein K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4]
D BER92_11535 cell division protein FtsX K09808 lolC_E; lipoprotein-releasing system permease protein
D BER92_11530 lipoprotein releasing system, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D BER92_08870 heme exporter protein CcmD K02196 ccmD; heme exporter protein D
D BER92_08875 heme ABC transporter permease K02195 ccmC; heme exporter protein C
D BER92_08880 heme exporter protein CcmB K02194 ccmB; heme exporter protein B
D BER92_08885 heme ABC exporter, ATP-binding protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D BER92_00225 cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D BER92_00230 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D BER92_08110 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D BER92_00605 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D BER92_17260 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D BER92_17265 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D BER92_08115 multidrug ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D BER92_00610 ABC transporter K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D BER92_17270 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D BER92_04640 oxidoreductase K02004 ABC.CD.P; putative ABC transport system permease protein
D BER92_04635 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D BER92_13500 Fe-S cluster assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein
D BER92_18250 bile acid:sodium symporter K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D BER92_00180 MATE family efflux transporter K26939 norM; MATE family, multidrug efflux pump
D BER92_05945 MATE family efflux transporter K26937 dinF; MATE family, multidrug efflux pump
D BER92_10860 MFS transporter K08139 HXT; MFS transporter, SP family, sugar:H+ symporter
D BER92_08165 L-fucose:H+ symporter permease K02429 fucP; MFS transporter, FHS family, L-fucose permease
D BER92_01110 L-fucose:H+ symporter permease K02429 fucP; MFS transporter, FHS family, L-fucose permease
D BER92_19130 alpha-ketoglutarate transporter K03761 kgtP; MFS transporter, MHS family, alpha-ketoglutarate permease
D BER92_18340 signal transduction protein K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D BER92_05575 hypothetical protein K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D BER92_12305 MFS transporter K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D BER92_06555 emrB; multidrug resistance protein B K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D BER92_07535 EmrB/QacA family drug resistance transporter K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D BER92_16505 MFS transporter K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein
D BER92_08685 MFS transporter K08369 ydjE; MFS transporter, putative metabolite:H+ symporter
D BER92_13705 phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D BER92_13700 phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr
D BER92_12550 phosphoenolpyruvate--protein phosphotransferase K23993 fruB; multiphosphoryl transfer protein [EC:2.7.3.9 2.7.1.202]
D BER92_12560 PTS fructose transporter subunit IIBC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D BER92_13695 PTS fructose IIA subunit family protein K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D BER92_13680 PTS fructose transporter subunit IIA K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D BER92_17750 aquaporin K02440 glpF; glycerol uptake facilitator
D BER92_18600 ammonia channel protein K03320 amt; ammonium transporter, Amt family
D BER92_06695 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D BER92_04025 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D BER92_12050 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D BER92_04840 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D BER92_06895 stringent starvation protein A K03599 sspA; stringent starvation protein A
D BER92_16975 hypothetical protein K07114 yfbK; Ca-activated chloride channel homolog
D BER92_16980 hypothetical protein K07114 yfbK; Ca-activated chloride channel homolog
D BER92_05340 mechanosensitive ion channel protein MscL K03282 mscL; large conductance mechanosensitive channel
D BER92_17630 Ion channel protein K05802 mscK; potassium-dependent mechanosensitive channel
D BER92_11725 mechanosensitive ion channel protein MscS K03442 mscS; small conductance mechanosensitive channel
D BER92_01790 magnesium transporter K06213 mgtE; magnesium transporter
D BER92_13710 magnesium transporter K06213 mgtE; magnesium transporter
D BER92_09570 motC; flagellar motor protein K02556 motA; chemotaxis protein MotA
D BER92_16100 flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA
D BER92_09565 flagellar motor protein MotD K02557 motB; chemotaxis protein MotB
D BER92_16105 flagellar motor protein MotB K02557 motB; chemotaxis protein MotB
D BER92_00050 biopolymer transporter ExbB K03561 exbB; biopolymer transport protein ExbB
D BER92_11515 biopolymer transporter ExbB K03561 exbB; biopolymer transport protein ExbB
D BER92_00055 biopolymer transporter ExbD K03559 exbD; biopolymer transport protein ExbD
D BER92_00060 biopolymer transporter ExbD K03559 exbD; biopolymer transport protein ExbD
D BER92_11510 biopolymer transporter K03559 exbD; biopolymer transport protein ExbD
D BER92_14450 protein TolQ K03562 tolQ; biopolymer transport protein TolQ
D BER92_14445 protein TolR K03560 tolR; biopolymer transport protein TolR
D BER92_06840 magnesium transporter CorA K03284 corA; magnesium transporter
D BER92_02520 magnesium transporter K03284 corA; magnesium transporter
D BER92_08700 hemolysin K03699 tlyC; magnesium and cobalt exporter, CNNM family
D BER92_03170 porin K07221 oprO_P; phosphate-selective porin OprO and OprP
D BER92_03230 porin K07221 oprO_P; phosphate-selective porin OprO and OprP
D BER92_02235 hypothetical protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D BER92_11335 cell envelope biogenesis protein OmpA K03286 TC.OOP; OmpA-OmpF porin, OOP family
D BER92_00100 hypothetical protein K06076 fadL; long-chain fatty acid transport protein
D BER92_06460 fimbriae usher protein K07347 fimD; outer membrane usher protein
D BER92_05375 esterase K12686 apeE; outer membrane lipase/esterase
D BER92_13525 TonB-dependent receptor K16090 fiu; catecholate siderophore receptor
D BER92_15120 TonB-dependent receptor K16091 fecA; Fe(3+) dicitrate transport protein
D BER92_15150 TonB-dependent vitamin B12 receptor K16092 btuB; vitamin B12 transporter
D BER92_06510 ligand-gated channel K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D BER92_02290 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D BER92_03380 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D BER92_04000 ligand-gated channel K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D BER92_04425 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D BER92_13135 ligand-gated channel K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D BER92_13750 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D BER92_13920 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D BER92_14520 ligand-gated channel K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D BER92_14535 ligand-gated channel K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D BER92_14540 ferric enterobactin receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D BER92_16740 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D BER92_17255 ligand-gated channel K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D BER92_03310 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D BER92_03275 hypothetical protein K12340 tolC; outer membrane protein
D BER92_06040 polysaccharide biosynthesis protein GumB K01991 wza; polysaccharide biosynthesis/export protein
D BER92_12565 porin K07267 oprB; porin
D BER92_06395 outer membrane protein assembly factor BamA K07277 SAM50; outer membrane protein insertion porin family
D BER92_10070 outer membrane protein assembly factor BamB K17713 bamB; outer membrane protein assembly factor BamB
D BER92_03950 competence protein K05807 bamD; outer membrane protein assembly factor BamD
D BER92_07945 hypothetical protein K06186 bamE; outer membrane protein assembly factor BamE
D BER92_01055 hypothetical protein K07278 tamA; translocation and assembly module TamA
D BER92_01060 pathogenicity protein K09800 tamB; translocation and assembly module TamB
D BER92_04345 hypothetical protein K21449 ata; trimeric autotransporter adhesin
D BER92_13660 lipopolysaccharide transport periplasmic protein LptA K09774 lptA; lipopolysaccharide export system protein LptA
D BER92_13655 LPS export ABC transporter periplasmic protein LptC K11719 lptC; lipopolysaccharide export system protein LptC
D BER92_04750 organic solvent tolerance protein K04744 lptD; LPS-assembly protein
D BER92_12815 hypothetical protein K03643 lptE; LPS-assembly lipoprotein
D BER92_06850 magnesium/cobalt efflux protein K06189 corC; hemolysin (HlyC) family protein
D BER92_03150 sugar transporter K16211 malY; maltose/moltooligosaccharide transporter
D BER92_02510 D-serine/D-alanine/glycine transporter K11737 cycA; D-serine/D-alanine/glycine transporter
D BER92_12180 amino acid permease K16235 mmuP; S-methylmethionine transporter
D BER92_06785 cation diffusion facilitator family transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein
D BER92_07575 multidrug efflux RND transporter permease K18138 acrB; multidrug efflux pump
D BER92_16700 multidrug transporter AcrB K18138 acrB; multidrug efflux pump
D BER92_00295 acriflavine resistance protein B K07788 mdtB; multidrug efflux pump
D BER92_00300 acriflavin resistance protein K07789 mdtC; multidrug efflux pump
D BER92_01165 actP; cation acetate symporter K14393 actP; cation/acetate symporter
D BER92_03235 C4-dicarboxylate transporter DctA K11103 dctA; aerobic C4-dicarboxylate transport protein
D BER92_17035 Na+/H+ antiporter K24163 nhaK; monovalent cation/hydrogen antiporter
D BER92_14545 cation:proton antiport protein K26735 KEA4_5_6; K+:H+ antiporter
D BER92_13035 potassium transporter K26731 CHX; K+:H+ antiporter
D BER92_04015 hypothetical protein K06901 pbuG; adenine/guanine/hypoxanthine permease
D BER92_10115 voltage-gated chloride channel protein K03281 clcA; chloride channel protein, CIC family
D BER92_02585 sodium-independent anion transporter K03321 TC.SULP; sulfate permease, SulP family
D BER92_17300 sodium-independent anion transporter K03321 TC.SULP; sulfate permease, SulP family
D BER92_11745 divalent metal cation transporter K03322 mntH; manganese transport protein
D BER92_18105 monovalent cation/H+ antiporter subunit A K05559 phaA; multicomponent K+:H+ antiporter subunit A
D BER92_18110 Na+/H+ antiporter subunit C K05560 phaC; multicomponent K+:H+ antiporter subunit C
D BER92_18115 monovalent cation/H+ antiporter subunit D K05561 phaD; multicomponent K+:H+ antiporter subunit D
D BER92_18120 Na+/H+ antiporter subunit E K05562 phaE; multicomponent K+:H+ antiporter subunit E
D BER92_18125 K+/H+ antiporter subunit F K05563 phaF; multicomponent K+:H+ antiporter subunit F
D BER92_18130 Na+/H+ antiporter subunit G K05564 phaG; multicomponent K+:H+ antiporter subunit G
D BER92_14840 murein biosynthesis integral membrane protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase
D BER92_18685 malate permease K24180 mleP; malate permease and related proteins
D BER92_14465 potassium transporter Kup K03549 kup; KUP system potassium uptake protein
D BER92_18025 amino acid permease K05834 rhtB; homoserine/homoserine lactone efflux protein
D BER92_12155 hypothetical protein K09125 yhhQ; queuosine precursor transporter
D BER92_17450 hypothetical protein K09125 yhhQ; queuosine precursor transporter
D BER92_03770 cell division protein FtsW K03588 ftsW; cell division protein FtsW
D BER92_01100 hypothetical protein K23242 mntP; manganese efflux pump family protein
D BER92_13310 carbon starvation protein A K23676 btsT; pyruvate/proton symporter
D BER92_09690 energy transducer TonB K03832 tonB; periplasmic protein TonB
D BER92_00045 energy transducer TonB K03832 tonB; periplasmic protein TonB
D BER92_00640 energy transducer TonB K03832 tonB; periplasmic protein TonB
D BER92_12520 energy transducer TonB K03832 tonB; periplasmic protein TonB
D BER92_04155 energy transducer TonB K03832 tonB; periplasmic protein TonB
D BER92_14430 peptidoglycan-associated lipoprotein K03640 pal; peptidoglycan-associated lipoprotein
D BER92_14440 protein TolA K03646 tolA; colicin import membrane protein
D BER92_14435 Tol-Pal system beta propeller repeat protein TolB K03641 tolB; TolB protein
D BER92_17415 malonate decarboxylase acyl carrier protein K13931 mdcC; malonate decarboxylase delta subunit
D BER92_06550 multidrug transporter K03543 emrA; membrane fusion protein, multidrug efflux system
D BER92_07530 multidrug ABC transporter permease K03543 emrA; membrane fusion protein, multidrug efflux system
D BER92_03105 hemolysin secretion protein D K11003 hlyD; membrane fusion protein, hemolysin D
D BER92_07580 efflux transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D BER92_16705 efflux transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D BER92_00290 efflux transporter periplasmic adaptor subunit K07799 mdtA; membrane fusion protein, multidrug efflux system
D BER92_04420 aminotransferase K03811 pnuC; nicotinamide mononucleotide transporter
D BER92_09330 iron transporter K04758 feoA; ferrous iron transport protein A
D BER92_09335 ferrous iron transporter B K04759 feoB; ferrous iron transport protein B
D BER92_01340 entericidin K16347 ecnA; entericidin A
D BER92_01345 entericidin K16347 ecnA; entericidin A
D BER92_08640 hypothetical protein K02198 ccmF; cytochrome c-type biogenesis protein CcmF
D BER92_08860 c-type cytochrome biogenesis protein CcmF K02198 ccmF; cytochrome c-type biogenesis protein CcmF
C 02044 Secretion system [BR:xfr02044]
D BER92_03100 peptidase C39 K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D BER92_03105 hemolysin secretion protein D K11003 hlyD; membrane fusion protein, hemolysin D
D BER92_03275 hypothetical protein K12340 tolC; outer membrane protein
D BER92_05540 ABC transporter K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D BER92_04405 type II secretion system protein GspD K02453 gspD; general secretion pathway protein D
D BER92_18935 type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D BER92_04355 type II secretion system protein GspE K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D BER92_04360 type II secretion system protein GspF K02455 gspF; general secretion pathway protein F
D BER92_04365 type II secretion system protein GspG K02456 gspG; general secretion pathway protein G
D BER92_04370 type II secretion system protein GspH K02457 gspH; general secretion pathway protein H
D BER92_04375 general secretion pathway protein GspI K02458 gspI; general secretion pathway protein I
D BER92_04380 general secretion pathway protein GspJ K02459 gspJ; general secretion pathway protein J
D BER92_04385 general secretion pathway protein GspK K02460 gspK; general secretion pathway protein K
D BER92_04390 general secretion pathway protein GspL K02461 gspL; general secretion pathway protein L
D BER92_04395 general secretion pathway protein GspM K02462 gspM; general secretion pathway protein M
D BER92_02925 type II secretion system protein N K02463 gspN; general secretion pathway protein N
D BER92_04400 general secretion pathway protein GspN K02463 gspN; general secretion pathway protein N
D BER92_03890 methyltransferase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D BER92_03900 prepilin-type N-terminal cleavage/methylation domain-containing protein K02650 pilA; type IV pilus assembly protein PilA
D BER92_03905 type IV-A pilus assembly ATPase PilB K02652 pilB; type IV pilus assembly protein PilB
D BER92_03895 type II secretory pathway protein K02653 pilC; type IV pilus assembly protein PilC
D BER92_10085 type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF
D BER92_04165 pilus assembly protein PilG K02657 pilG; twitching motility two-component system response regulator PilG
D BER92_04170 two-component system response regulator K02658 pilH; twitching motility two-component system response regulator PilH
D BER92_13860 two-component system response regulator K02658 pilH; twitching motility two-component system response regulator PilH
D BER92_04175 chemotaxis protein CheW K02659 pilI; twitching motility protein PilI
D BER92_04180 chemotaxis protein K02660 pilJ; twitching motility protein PilJ
D BER92_03635 pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM
D BER92_03640 fimbrial protein K02663 pilN; type IV pilus assembly protein PilN
D BER92_03645 fimbrial protein K02664 pilO; type IV pilus assembly protein PilO
D BER92_03650 fimbrial protein K02665 pilP; type IV pilus assembly protein PilP
D BER92_03655 fimbrial protein K02666 pilQ; type IV pilus assembly protein PilQ
D BER92_13450 twitching motility protein PilT K02669 pilT; twitching motility protein PilT
D BER92_13445 type IV pili twitching motility protein PilT K02670 pilU; twitching motility protein PilU
D BER92_15720 type IV pili twitching motility protein PilT K02670 pilU; twitching motility protein PilU
D BER92_07430 N-terminal cleavage protein K02672 pilW; type IV pilus assembly protein PilW
D BER92_07435 pilus assembly protein K02674 pilY1; type IV pilus assembly protein PilY1
D BER92_13975 pilus assembly protein PilZ K02676 pilZ; type IV pilus assembly protein PilZ
D BER92_07425 prepilin K08084 fimT; type IV fimbrial biogenesis protein FimT
D BER92_07135 ferrous iron transporter B K08086 fimV; pilus assembly protein FimV
D BER92_13560 competence protein ComEA K02237 comEA; competence protein ComEA
D BER92_11520 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC
D BER92_12865 EscC/YscC/HrcC family type III secretion system outer membrane ring protein K03219 yscC; type III secretion protein C
D BER92_12945 serine kinase K03220 yscD; type III secretion protein D
D BER92_12895 EscJ/YscJ/HrcJ family type III secretion inner membrane ring protein K03222 yscJ; type III secretion protein J
D BER92_12885 ATP-dependent helicase HrpB K03223 yscL; type III secretion protein L
D BER92_12880 EscN/YscN/HrcN family type III secretion system ATPase K03224 yscN; ATP synthase in type III secretion protein N [EC:7.4.2.8]
D BER92_12925 aldolase K03225 yscQ; type III secretion protein Q
D BER92_12930 EscR/YscR/HrcR family type III secretion system export apparatus protein K03226 yscR; type III secretion protein R
D BER92_12935 EscS/YscS/HrcS family type III secretion system export apparatus protein K03227 yscS; type III secretion protein S
D BER92_12870 EscT/YscT/HrcT family type III secretion system export apparatus protein K03228 yscT; type III secretion protein T
D BER92_12910 EscU/YscU/HrcU family type III secretion system export apparatus switch protein K03229 yscU; type III secretion protein U
D BER92_12915 EscV/YscV/HrcV family type III secretion system export apparatus protein K03230 yscV; type III secretion protein V
D BER92_12905 serine kinase K18373 hrpB1; type III secretion protein HrpB1
D BER92_12900 type III secretion protein HrpB2 K18374 hrpB2; type III secretion inner rod protein HrpB2
D BER92_07615 serine kinase K18376 hrpF; type III secretion translocon protein HrpF
D BER92_12940 4-hydroxyphenylacetate catabolism regulator HpaA K18379 hpaA; type III secretion regulatory protein HpaA
D BER92_12960 4-hydroxyphenylacetate 3-monooxygenase K18380 hpaB; type III secretion control protein HpaB
D BER92_12920 type III secretion protein K18381 hpaC; type III secretion control protein HpaP
D BER92_10450 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D BER92_10445 flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D BER92_10365 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D BER92_10375 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D BER92_10380 flagellum-specific ATP synthase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D BER92_10405 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D BER92_10410 flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ
D BER92_10415 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D BER92_10420 flagellar biogenesis protein K02420 fliQ; flagellar biosynthesis protein FliQ
D BER92_10425 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D BER92_07730 hypothetical protein K03194 virB1; type IV secretion system protein VirB1
D BER92_07735 hypothetical protein K03197 virB2; type IV secretion system protein VirB2
D BER92_19400 type IV secretion system protein VirB3 K03198 virB3; type IV secretion system protein VirB3
D BER92_07740 hypothetical protein K03198 virB3; type IV secretion system protein VirB3
D BER92_19395 hypothetical protein K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8]
D BER92_07745 hypothetical protein K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8]
D BER92_07810 hypothetical protein K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8]
D BER92_19390 hypothetical protein K03200 virB5; type IV secretion system protein VirB5
D BER92_07750 hypothetical protein K03200 virB5; type IV secretion system protein VirB5
D BER92_07790 hypothetical protein K03200 virB5; type IV secretion system protein VirB5
D BER92_07820 hypothetical protein K03200 virB5; type IV secretion system protein VirB5
D BER92_19380 hypothetical protein K03201 virB6; type IV secretion system protein VirB6
D BER92_07755 hypothetical protein K03201 virB6; type IV secretion system protein VirB6
D BER92_07795 hypothetical protein K03201 virB6; type IV secretion system protein VirB6
D BER92_07825 hypothetical protein K03201 virB6; type IV secretion system protein VirB6
D BER92_19375 hypothetical protein K03203 virB8; type IV secretion system protein VirB8
D BER92_07710 conjugative transfer protein K03203 virB8; type IV secretion system protein VirB8
D BER92_19370 hypothetical protein K03204 virB9; type IV secretion system protein VirB9
D BER92_19365 hypothetical protein K03195 virB10; type IV secretion system protein VirB10
D BER92_07720 hypothetical protein K03195 virB10; type IV secretion system protein VirB10
D BER92_19360 P-type DNA transfer ATPase VirB11 K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8]
D BER92_07725 P-type DNA transfer ATPase VirB11 K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8]
D BER92_19355 hypothetical protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D BER92_19565 hypothetical protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D BER92_10785 type IV secretion system protein VirD4 K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D BER92_13740 type IV secretion system protein VirD4 K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D BER92_05515 type VI secretion protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D BER92_04330 hypothetical protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D BER92_09145 P-type conjugative transfer protein TrbJ K20266 trbJ; type IV secretion system protein TrbJ
D BER92_05375 esterase K12686 apeE; outer membrane lipase/esterase
D BER92_11345 type VI secretion protein VasK K11891 impL; type VI secretion system protein ImpL
D BER92_09880 type VI secretion system protein ImpK K11892 impK; type VI secretion system protein ImpK
D BER92_09875 type VI secretion system-associated protein K11893 impJ; type VI secretion system protein ImpJ
D BER92_09835 type VI secretion protein K11895 impH; type VI secretion system protein ImpH
D BER92_09840 type VI secretion protein K11896 impG; type VI secretion system protein ImpG
D BER92_09845 type VI secretion protein K11897 impF; type VI secretion system protein ImpF
D BER92_09855 EvpB family type VI secretion protein K11900 impC; type VI secretion system protein ImpC
D BER92_09860 type VI secretion system-associated protein K11901 impB; type VI secretion system protein ImpB
D BER92_11330 type VI secretion protein K11902 impA; type VI secretion system protein ImpA
D BER92_09850 Hcp family protein K11903 hcp; type VI secretion system secreted protein Hcp
D BER92_09885 type IV secretion protein Rhs K11904 vgrG; type VI secretion system secreted protein VgrG
D BER92_09910 type IV secretion protein Rhs K11904 vgrG; type VI secretion system secreted protein VgrG
D BER92_09950 type IV secretion protein Rhs K11904 vgrG; type VI secretion system secreted protein VgrG
D BER92_11420 type IV secretion protein Rhs K11904 vgrG; type VI secretion system secreted protein VgrG
D BER92_04245 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG
D BER92_09820 type IV secretion protein Rhs K11904 vgrG; type VI secretion system secreted protein VgrG
D BER92_11305 type IV secretion protein Rhs K11904 vgrG; type VI secretion system secreted protein VgrG
D BER92_11320 type IV secretion protein Rhs K11904 vgrG; type VI secretion system secreted protein VgrG
D BER92_15215 type IV secretion protein Rhs K11904 vgrG; type VI secretion system secreted protein VgrG
D BER92_00750 type IV secretion protein Rhs K11904 vgrG; type VI secretion system secreted protein VgrG
D BER92_09870 type VI secretion system-associated lipoprotein K11906 vasD; type VI secretion system protein VasD
D BER92_09830 ClpV1 family T6SS ATPase K11907 vasG; type VI secretion system protein VasG
D BER92_11340 type VI secretion-associated protein K11890 impM; type VI secretion system protein ImpM
D BER92_06445 pilus assembly protein K07346 fimC; fimbrial chaperone protein
D BER92_06465 pilus assembly protein K07346 fimC; fimbrial chaperone protein
D BER92_06460 fimbriae usher protein K07347 fimD; outer membrane usher protein
D BER92_06455 spore coat protein U K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D BER92_06470 adhesin K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D BER92_03820 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D BER92_02085 protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D BER92_12575 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D BER92_05100 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D BER92_12570 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D BER92_07230 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D BER92_05265 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D BER92_05905 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D BER92_06190 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D BER92_12580 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D BER92_19315 membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D BER92_18960 tatA; preprotein translocase subunit SecA K03116 tatA; sec-independent protein translocase protein TatA
D BER92_18955 twin arginine-targeting protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB
D BER92_18950 twin arginine-targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:xfr02042]
D BER92_09620 zonular occludens toxin K10954 zot; zona occludens toxin
D BER92_09660 zonular occludens toxin K10954 zot; zona occludens toxin
D BER92_08700 hemolysin K03699 tlyC; magnesium and cobalt exporter, CNNM family
D BER92_05805 hemolysin III K11068 hlyIII; hemolysin III
D BER92_01830 hemolysin III K11068 hlyIII; hemolysin III
D BER92_02295 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3]
D BER92_01595 beta-N-acetylglucosaminidase K01197 hya; hyaluronoglucosaminidase [EC:3.2.1.35]
C 02022 Two-component system [BR:xfr02022]
D BER92_15310 phosphate regulon sensor histidine kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D BER92_15305 phosphate regulon transcriptional regulatory protein PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D BER92_18480 two-component sensor histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D BER92_18485 DNA-binding response regulator K07660 phoP; two-component system, OmpR family, response regulator PhoP
D BER92_03180 histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
D BER92_03175 DNA-binding response regulator K07774 tctD; two-component system, OmpR family, response regulator TctD
D BER92_01455 DNA-binding response regulator K02483 K02483; two-component system, OmpR family, response regulator
D BER92_09735 sirA; two-component system response regulator UvrY K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D BER92_07420 histidine kinase K08082 algZ; two-component system, LytTR family, sensor histidine kinase AlgZ [EC:2.7.13.3]
D BER92_02610 DNA-binding response regulator K08083 algR; two-component system, LytTR family, response regulator AlgR
D BER92_18605 PAS domain-containing sensor histidine kinase K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D BER92_18610 nitrogen regulation protein NR(I) K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D BER92_03930 PAS domain-containing sensor histidine kinase K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3]
D BER92_03925 sigma-54-dependent Fis family transcriptional regulator K02667 pilR; two-component system, NtrC family, response regulator PilR
D BER92_09540 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D BER92_10480 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D BER92_09545 Fis family transcriptional regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D BER92_10470 histidine kinase K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D BER92_09465 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D BER92_17135 methyltransferase K13924 cheBR; two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61]
D BER92_10240 chemotaxis protein CheW K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D BER92_04185 chemotaxis protein K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator)
D BER92_04165 pilus assembly protein PilG K02657 pilG; twitching motility two-component system response regulator PilG
D BER92_04170 two-component system response regulator K02658 pilH; twitching motility two-component system response regulator PilH
D BER92_13860 two-component system response regulator K02658 pilH; twitching motility two-component system response regulator PilH
D BER92_04190 chemotaxis protein K06597 chpB; chemosensory pili system protein ChpB (putative protein-glutamate methylesterase)
D BER92_09415 hybrid sensor histidine kinase/response regulator K10715 rpfC; two-component system, sensor histidine kinase RpfC [EC:2.7.13.3]
D BER92_09405 two-component system response regulator K13815 rpfG; two-component system, response regulator RpfG
D BER92_10715 histidine kinase K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
D BER92_10720 two-component system response regulator K15012 regA; two-component system, response regulator RegA
D BER92_02890 two-component system response regulator K02485 rssB; two-component system, response regulator
C 02035 Bacterial motility proteins [BR:xfr02035]
D BER92_09540 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D BER92_10480 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D BER92_09485 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D BER92_09555 chemotaxis protein K03408 cheW; purine-binding chemotaxis protein CheW
D BER92_09470 chemotaxis protein CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D BER92_09475 chemotaxis protein CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D BER92_09465 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D BER92_17135 methyltransferase K13924 cheBR; two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61]
D BER92_09545 Fis family transcriptional regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D BER92_10470 histidine kinase K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D BER92_10475 chemotaxis protein K03414 cheZ; chemotaxis protein CheZ
D BER92_10240 chemotaxis protein CheW K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D BER92_08600 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D BER92_09495 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D BER92_14585 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D BER92_10190 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D BER92_09505 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D BER92_09510 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D BER92_09520 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D BER92_10375 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D BER92_10380 flagellum-specific ATP synthase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D BER92_10385 flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ
D BER92_10410 flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ
D BER92_10415 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D BER92_10420 flagellar biogenesis protein K02420 fliQ; flagellar biosynthesis protein FliQ
D BER92_10425 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D BER92_10450 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D BER92_10445 flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D BER92_10370 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D BER92_10400 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D BER92_10405 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D BER92_10365 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D BER92_10280 flagellar biosynthesis protein FlgI K02394 flgI; flagellar P-ring protein FlgI
D BER92_10235 flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D BER92_10275 flagellar basal body L-ring protein K02393 flgH; flagellar L-ring protein FlgH
D BER92_10395 flagellar basal body protein FliL K02415 fliL; flagellar protein FliL
D BER92_10360 flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D BER92_10390 flagellar protein K02414 fliK; flagellar hook-length control protein FliK
D BER92_10245 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D BER92_10250 flagellar basal body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D BER92_10255 flgD; flagellar basal body rod modification protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D BER92_10265 flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D BER92_10270 flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D BER92_10285 flgJ; flagellar rod assembly protein/muramidase FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ
D BER92_10260 flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE
D BER92_10290 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D BER92_10295 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D BER92_10300 flagellin K02406 fliC; flagellin
D BER92_10305 flagellar protein K02407 fliD; flagellar hook-associated protein 2
D BER92_10310 flagellar export chaperone FliS K02422 fliS; flagellar secretion chaperone FliS
D BER92_10465 RNA polymerase sigma factor FliA K02405 fliA; RNA polymerase sigma factor FliA
D BER92_09570 motC; flagellar motor protein K02556 motA; chemotaxis protein MotA
D BER92_16100 flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA
D BER92_09565 flagellar motor protein MotD K02557 motB; chemotaxis protein MotB
D BER92_16105 flagellar motor protein MotB K02557 motB; chemotaxis protein MotB
D BER92_10340 Fis family transcriptional regulator K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D BER92_10230 flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D BER92_10455 flagellar biosynthesis protein FlhF K02404 flhF; flagellar biosynthesis protein FlhF
D BER92_10460 cobyrinic acid a,c-diamide synthase K04562 flhG; flagellar biosynthesis protein FlhG
D BER92_04165 pilus assembly protein PilG K02657 pilG; twitching motility two-component system response regulator PilG
D BER92_04170 two-component system response regulator K02658 pilH; twitching motility two-component system response regulator PilH
D BER92_13860 two-component system response regulator K02658 pilH; twitching motility two-component system response regulator PilH
D BER92_04175 chemotaxis protein CheW K02659 pilI; twitching motility protein PilI
D BER92_04180 chemotaxis protein K02660 pilJ; twitching motility protein PilJ
D BER92_04185 chemotaxis protein K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator)
D BER92_03925 sigma-54-dependent Fis family transcriptional regulator K02667 pilR; two-component system, NtrC family, response regulator PilR
D BER92_03930 PAS domain-containing sensor histidine kinase K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3]
D BER92_13450 twitching motility protein PilT K02669 pilT; twitching motility protein PilT
D BER92_13445 type IV pili twitching motility protein PilT K02670 pilU; twitching motility protein PilU
D BER92_15720 type IV pili twitching motility protein PilT K02670 pilU; twitching motility protein PilU
D BER92_04190 chemotaxis protein K06597 chpB; chemosensory pili system protein ChpB (putative protein-glutamate methylesterase)
D BER92_03900 prepilin-type N-terminal cleavage/methylation domain-containing protein K02650 pilA; type IV pilus assembly protein PilA
D BER92_03905 type IV-A pilus assembly ATPase PilB K02652 pilB; type IV pilus assembly protein PilB
D BER92_03895 type II secretory pathway protein K02653 pilC; type IV pilus assembly protein PilC
D BER92_03890 methyltransferase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D BER92_10085 type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF
D BER92_03655 fimbrial protein K02666 pilQ; type IV pilus assembly protein PilQ
D BER92_03650 fimbrial protein K02665 pilP; type IV pilus assembly protein PilP
D BER92_03645 fimbrial protein K02664 pilO; type IV pilus assembly protein PilO
D BER92_03640 fimbrial protein K02663 pilN; type IV pilus assembly protein PilN
D BER92_03635 pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM
D BER92_13975 pilus assembly protein PilZ K02676 pilZ; type IV pilus assembly protein PilZ
D BER92_07430 N-terminal cleavage protein K02672 pilW; type IV pilus assembly protein PilW
D BER92_07435 pilus assembly protein K02674 pilY1; type IV pilus assembly protein PilY1
D BER92_06445 pilus assembly protein K07346 fimC; fimbrial chaperone protein
D BER92_06465 pilus assembly protein K07346 fimC; fimbrial chaperone protein
D BER92_06460 fimbriae usher protein K07347 fimD; outer membrane usher protein
D BER92_06455 spore coat protein U K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D BER92_06470 adhesin K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:xfr04812]
D BER92_02745 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D BER92_03800 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D BER92_03795 cell division protein FtsA K03590 ftsA; cell division protein FtsA
D BER92_15000 septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D BER92_15005 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D BER92_15010 cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D BER92_18365 chromosome partitioning protein K03496 parA; chromosome partitioning protein
D BER92_18675 CMP-binding protein K03496 parA; chromosome partitioning protein
D BER92_19440 hypothetical protein K03496 parA; chromosome partitioning protein
D BER92_19535 hypothetical protein K03496 parA; chromosome partitioning protein
D BER92_09560 chromosome partitioning protein ParA K03496 parA; chromosome partitioning protein
D BER92_18370 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D BER92_19445 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:xfr04147]
D BER92_12660 molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG
D BER92_16780 fructose-bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D BER92_08745 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D BER92_16890 type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D BER92_16795 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D BER92_16785 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D BER92_14565 peptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D BER92_17505 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D BER92_07970 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D BER92_10820 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D BER92_17465 gluconolactonase K01053 gnl; gluconolactonase [EC:3.1.1.17]
D BER92_04810 gluconolactonase K01053 gnl; gluconolactonase [EC:3.1.1.17]
D BER92_09085 IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D BER92_05090 translation elongation factor Tu K02358 tuf; elongation factor Tu
D BER92_05155 translation elongation factor Tu K02358 tuf; elongation factor Tu
D BER92_14070 histidine triad nucleotide-binding protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D BER92_18250 bile acid:sodium symporter K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D BER92_09425 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BER92_07085 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D BER92_02050 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D BER92_04550 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D BER92_03425 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D BER92_12035 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D BER92_11860 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D BER92_11885 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D BER92_15695 cystathionine beta-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D BER92_01980 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D BER92_04235 alpha-L-fucosidase K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51]
D BER92_13755 alpha-L-fucosidase K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51]
D BER92_17600 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D BER92_18805 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D BER92_17755 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D BER92_18035 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BER92_18590 type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BER92_07515 gamma-glutamylputrescine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BER92_07520 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BER92_18545 delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D BER92_00565 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D BER92_09685 4a-hydroxytetrahydrobiopterin dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D BER92_12705 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D BER92_00115 3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D BER92_09290 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D BER92_16305 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D BER92_08035 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BER92_15940 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BER92_15620 electron transfer flavoprotein subunit beta K03522 fixB; electron transfer flavoprotein alpha subunit
D BER92_01775 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D BER92_11585 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D BER92_07225 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D BER92_13280 gpmA; phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D BER92_01570 hypothetical protein K03098 APOD; apolipoprotein D and lipocalin family protein
D BER92_02630 hypothetical protein K03098 APOD; apolipoprotein D and lipocalin family protein
D BER92_06130 hypothetical protein K03098 APOD; apolipoprotein D and lipocalin family protein
C 02048 Prokaryotic defense system [BR:xfr02048]
D BER92_16650 subtype I-F CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1
D BER92_16655 type I-F CRISPR-associated helicase Cas3 K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D BER92_16660 type I-F CRISPR-associated protein Csy1 K19127 csy1; CRISPR-associated protein Csy1
D BER92_16665 type I-F CRISPR-associated protein Csy2 K19128 csy2; CRISPR-associated protein Csy2
D BER92_16670 type I-F CRISPR-associated protein Csy3 K19129 csy3; CRISPR-associated protein Csy3
D BER92_16675 type I-F CRISPR-associated endoribonuclease Cas6/Csy4 K19130 csy4; CRISPR-associated endonuclease Csy4 [EC:3.1.-.-]
D BER92_15475 DEAD/DEAH box helicase K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D BER92_15470 hypothetical protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D BER92_15455 type I restriction-modification system subunit M K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D BER92_00760 adenine methyltransferase K00571 E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]
D BER92_01905 hypothetical protein K19048 symE; toxic protein SymE
D BER92_11385 transposase K19048 symE; toxic protein SymE
D BER92_19500 addiction module antitoxin K07473 dinJ; DNA-damage-inducible protein J
D BER92_19585 addiction module antitoxin K07473 dinJ; DNA-damage-inducible protein J
D BER92_03720 plasmid maintenance protein CcdB K19163 ccdB; toxin CcdB
D BER92_03725 plasmid maintenance protein CcdB K19164 ccdA; antitoxin CcdA
D BER92_19495 addiction module antitoxin K19092 parE1_3_4; toxin ParE1/3/4
D BER92_19620 plasmid stabilization protein K19092 parE1_3_4; toxin ParE1/3/4
D BER92_07630 addiction module antitoxin K07746 parD1_3_4; antitoxin ParD1/3/4
D BER92_19180 plasmid maintenance system killer protein K07334 higB-1; toxin HigB-1
D BER92_19175 addiction module antidote protein, HigA family K21498 higA-1; antitoxin HigA-1
D BER92_09140 plasmid stability protein StbB K07062 fitB; toxin FitB [EC:3.1.-.-]
D BER92_09135 plasmid stabilization protein K21495 fitA; antitoxin FitA
D BER92_03800 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D BER92_02745 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D BER92_06535 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D BER92_08725 DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D BER92_13195 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D BER92_11540 hypothetical protein K19168 cptA; toxin CptA
D BER92_11545 hypothetical protein K09159 cptB; antitoxin CptB
D BER92_16825 hypothetical protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides [BR:xfr04052]
D BER92_02840 nicotinate phosphoribosyltransferase K03462 NAMPT; nicotinamide phosphoribosyltransferase [EC:2.4.2.12]
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:xfr01504]
D BER92_16935 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D BER92_14965 peptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D BER92_18165 D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D BER92_12270 hypothetical protein K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3]
D BER92_18480 two-component sensor histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D BER92_18485 DNA-binding response regulator K07660 phoP; two-component system, OmpR family, response regulator PhoP
D BER92_07580 efflux transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D BER92_16705 efflux transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D BER92_07575 multidrug efflux RND transporter permease K18138 acrB; multidrug efflux pump
D BER92_16700 multidrug transporter AcrB K18138 acrB; multidrug efflux pump
D BER92_03285 TetR family transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor
D BER92_03275 hypothetical protein K12340 tolC; outer membrane protein
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins [BR:xfr00536]
D BER92_01595 beta-N-acetylglucosaminidase K01197 hya; hyaluronoglucosaminidase [EC:3.2.1.35]
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:xfr00537]
D BER92_12705 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D BER92_02540 treA; alpha,alpha-trehalase K01194 TREH; alpha,alpha-trehalase [EC:3.2.1.28]
D BER92_14565 peptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D BER92_01595 beta-N-acetylglucosaminidase K01197 hya; hyaluronoglucosaminidase [EC:3.2.1.35]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:xfr03100]
D BER92_00435 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D BER92_16225 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D BER92_06920 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D BER92_11625 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D BER92_10640 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D BER92_17640 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D BER92_15260 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D BER92_11000 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D BER92_10995 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D BER92_07685 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D BER92_14390 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D BER92_14385 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D BER92_11465 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D BER92_05050 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D BER92_17930 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D BER92_11630 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D BER92_10850 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D BER92_05380 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D BER92_05080 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D BER92_11470 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D BER92_11460 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D BER92_15255 tRNA-His K14226 tRNA-His; tRNA His
D BER92_16810 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D BER92_16220 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D BER92_00440 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D BER92_14350 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D BER92_07235 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D BER92_09765 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D BER92_11650 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D BER92_06565 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D BER92_08205 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D BER92_04050 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D BER92_15250 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D BER92_07310 tRNA-Met K14230 tRNA-Met; tRNA Met
D BER92_17925 tRNA-Met K14230 tRNA-Met; tRNA Met
D BER92_00910 tRNA-Met K14230 tRNA-Met; tRNA Met
D BER92_06135 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D BER92_07650 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D BER92_15265 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D BER92_06035 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D BER92_14090 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D BER92_14140 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D BER92_12500 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D BER92_11025 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D BER92_14815 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D BER92_05085 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D BER92_01275 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D BER92_05095 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D BER92_05075 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D BER92_14380 tRNA-Val K14237 tRNA-Val; tRNA Val
D BER92_07695 tRNA-Val K14237 tRNA-Val; tRNA Val
D BER92_13970 tRNA-Val K14237 tRNA-Val; tRNA Val
D BER92_00430 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D BER92_00445 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D BER92_00450 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D BER92_14095 ffs; signal recognition particle sRNA small type K01983 ffs; SRP RNA
D BER92_03715 rnpB; RNase P RNA component class A K01978 rnpB; M1 RNA
D BER92_07920 ssrA; transfer-messenger RNA K15035 ssrA; transfer-messenger RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D BER92_18435 NADP-dependent 3-hydroxy acid dehydrogenase K05886 sdh; serine 3-dehydrogenase (NADP+) [EC:1.1.1.276]
D BER92_16565 2,5-didehydrogluconate reductase B K06222 dkgB; 2,5-diketo-D-gluconate reductase B [EC:1.1.1.346]
D BER92_17845 3-beta hydroxysteroid dehydrogenase K22320 oleD; 2-alkyl-3-oxoalkanoate reductase [EC:1.1.1.412]
D BER92_01075 polyvinylalcohol dehydrogenase K05889 pvadh; polyvinyl alcohol dehydrogenase (cytochrome) [EC:1.1.2.6]
D BER92_18210 glucose dehydrogenase K21430 yliI; aldose sugar dehydrogenase [EC:1.1.5.-]
D BER92_04815 glucose-fructose oxidoreductase K00118 gfo; glucose-fructose oxidoreductase [EC:1.1.99.28]
D BER92_18695 indolepyruvate ferredoxin oxidoreductase K04090 E1.2.7.8; indolepyruvate ferredoxin oxidoreductase [EC:1.2.7.8]
D BER92_02225 NADPH-dependent 2,4-dienoyl-CoA reductase K00219 fadH; 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34]
D BER92_16560 NADP-dependent oxidoreductase K23256 curA; NADPH-dependent curcumin reductase [EC:1.3.1.-]
D BER92_04110 pyrroloquinoline quinone biosynthesis protein PqqC K06137 pqqC; pyrroloquinoline-quinone synthase [EC:1.3.3.11]
D BER92_15565 electron transfer flavoprotein-ubiquinone oxidoreductase K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1]
D BER92_07005 NAD/FAD-dependent oxidoreductase K18208 RNLS; renalase [EC:1.6.3.5]
D BER92_02230 NADPH:quinone reductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D BER92_03850 NAD(P)H-quinone oxidoreductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D BER92_04880 alkyl hydroperoxide reductase subunit F K03387 ahpF; NADH-dependent peroxiredoxin subunit F [EC:1.8.1.-]
D BER92_04860 peptide-methionine (S)-S-oxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D BER92_16095 peptide-methionine (R)-S-oxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D BER92_00655 thiol:disulfide oxidoreductase K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-]
D BER92_12540 mononuclear molybdenum enzyme YedY K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-]
D BER92_17120 Mn-containing catalase K07217 ydbD; manganese catalase [EC:1.11.1.6]
D BER92_11750 chloroperoxidase K00433 cpo; non-heme chloroperoxidase [EC:1.11.1.10]
D BER92_10975 thiol peroxidase K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D BER92_04885 peroxiredoxin K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26]
D BER92_13410 OsmC family peroxiredoxin K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]
D BER92_16575 organic hydroperoxide resistance protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]
D BER92_11010 quercetin 2,3-dioxygenase K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D BER92_13530 Fe2+-dependent dioxygenase K07336 K07336; PKHD-type hydroxylase [EC:1.14.11.-]
D BER92_06620 ferredoxin--NADP(+) reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D BER92_04100 pyrroloquinoline quinone biosynthesis protein PqqE K06139 pqqE; PqqA peptide cyclase [EC:1.21.98.4]
D BER92_08780 protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D BER92_03280 protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D BER92_12240 cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D BER92_12255 cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D BER92_08345 GNAT family N-acetyltransferase K03824 yhbS; putative acetyltransferase [EC:2.3.1.-]
D BER92_00940 GNAT family N-acetyltransferase K24217 mnaT; L-amino acid N-acyltransferase [EC:2.3.1.-]
D BER92_08900 glutamine cyclotransferase K22757 QCT; glutaminyl-peptide cyclotransferase [EC:2.3.2.5]
D BER92_10155 leucyl/phenylalanyl-tRNA--protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D BER92_14060 hypothetical protein K22452 tgpA; protein-glutamine gamma-glutamyltransferase [EC:2.3.2.13]
D BER92_14910 arginyltransferase K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29]
D BER92_02120 3-oxoacyl-ACP synthase III K22317 oleA; acyl-CoA:acyl-CoA alkyltransferase [EC:2.3.3.20]
D BER92_17395 triphosphoribosyl-dephospho-CoA synthase MdcB K13930 mdcB; triphosphoribosyl-dephospho-CoA synthase [EC:2.4.2.52]
D BER92_04705 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D BER92_11715 phosphoenolpyruvate synthase regulatory protein K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33]
D BER92_17455 glutamine-synthetase adenylyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D BER92_17400 malonate decarboxylase holo-[acyl-carrier-protein] synthase K13934 mdcG; phosphoribosyl-dephospho-CoA transferase [EC:2.7.7.66]
D BER92_12040 hypothetical protein K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108]
D BER92_13685 HPr kinase/phosphorylase K06023 hprK; HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-]
D BER92_10890 9-O-acetylesterase K05970 SIAE; sialate O-acetylesterase [EC:3.1.1.53]
D BER92_18795 carboxylesterase K03929 pnbA; para-nitrobenzyl esterase [EC:3.1.1.-]
D BER92_14455 tol-pal system-associated acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D BER92_14870 thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D BER92_18670 phosphoglycerate mutase K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D BER92_01565 hypothetical protein K26148 K26148; c-di-GMP phosphodiesterase [EC:3.1.4.52]
D BER92_07445 two-component system response regulator K07814 K07814; cyclic di-GMP phosphodiesterase [EC:3.1.4.-]
D BER92_06675 DNAase K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D BER92_16510 hydrolase TatD K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D BER92_10880 alpha-xylosidase K01811 xylS; alpha-D-xyloside xylohydrolase [EC:3.2.1.177]
D BER92_18170 N-acetylmuramoyl-L-alanine amidase K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D BER92_08330 N-acetylmuramoyl-L-alanine amidase K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D BER92_00990 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D BER92_04465 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D BER92_14595 amino acid amidase K18457 laaA; L-proline amide hydrolase [EC:3.5.1.101]
D BER92_03080 acetyl xylan esterase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D BER92_14030 septum formation protein Maf K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-]
D BER92_14050 ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D BER92_16995 AAA family ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D BER92_17410 biotin-independent malonate decarboxylase subunit beta K13932 mdcD; malonate decarboxylase beta subunit [EC:4.1.1.87]
D BER92_17405 biotin-independent malonate decarboxylase subunit gamma K13933 mdcE; malonate decarboxylase gamma subunit [EC:4.1.1.87]
D BER92_17860 alpha/beta hydrolase K22318 oleB; cis-3-alkyl-4-acyloxetan-2-one decarboxylase [EC:4.1.1.114]
D BER92_05620 NAD(P)H-hydrate dehydratase K17758 nnrD; ADP-dependent NAD(P)H-hydrate dehydratase [EC:4.2.1.136]
D BER92_12125 bifunctional ADP-dependent (S)-NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D BER92_01115 L-fucose mutarotase K03534 rhaM; L-rhamnose mutarotase [EC:5.1.3.32]
D BER92_17850 peptide synthase K22319 oleC; olefin beta-lactone synthetase [EC:6.1.3.1]
D BER92_03430 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45]
D BER92_12200 hypothetical protein K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
C 99981 Carbohydrate metabolism
C 99982 Energy metabolism
D BER92_07475 sufurtransferase FdhD K02379 fdhD; FdhD protein
D BER92_10950 ferredoxin K05524 fdxA; ferredoxin
D BER92_15615 EtfB protein K03521 fixA; electron transfer flavoprotein beta subunit
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D BER92_13455 YggS family pyridoxal phosphate enzyme K06997 yggS; PLP dependent protein
D BER92_11870 GNAT family N-acetyltransferase K22479 argA; N-acetyltransferase
C 99986 Glycan metabolism
D BER92_09020 hypothetical protein K08992 lapA; lipopolysaccharide assembly protein A
D BER92_09025 lipopolysaccharide assembly protein LapB K19804 lapB; lipopolysaccharide assembly protein B
C 99987 Cofactor metabolism
D BER92_02055 porphyrin biosynthesis protein K02498 hemY; HemY protein
D BER92_17825 ubiquinone biosynthesis regulatory protein kinase UbiB K03688 ubiB; ubiquinone biosynthesis protein
D BER92_11055 2-polyprenylphenol 6-hydroxylase K03688 ubiB; ubiquinone biosynthesis protein
D BER92_17830 sterol-binding protein K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ
D BER92_01585 hypothetical protein K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK
C 99988 Secondary metabolism
D BER92_06705 NADPH-dependent FMN reductase K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone)
C 99999 Others
D BER92_02600 carboxylesterase K06999 K06999; phospholipase/carboxylesterase
D BER92_01795 GNAT family N-acetyltransferase K09181 yfiQ; acetyltransferase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D BER92_06655 cold-shock protein K03704 cspA; cold shock protein
D BER92_07030 cold-shock protein K03704 cspA; cold shock protein
D BER92_12055 cold-shock protein K03704 cspA; cold shock protein
D BER92_11665 RNA-binding transcriptional accessory protein K06959 tex; protein Tex
C 99974 Translation
D BER92_07055 DNA ligase-associated DEXH box helicase K07577 K07577; putative mRNA 3-end processing factor
C 99975 Protein processing
D BER92_10170 ATP-dependent Clp protease adapter ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D BER92_14355 trigger factor K03545 tig; trigger factor
D BER92_08555 sulfoxide reductase heme-binding subunit YedZ K17247 msrQ; methionine sulfoxide reductase heme-binding subunit
D BER92_07930 SsrA-binding protein K03664 smpB; SsrA-binding protein
D BER92_01580 ATP-dependent protease K07391 comM; magnesium chelatase family protein
D BER92_09680 Fe-S biogenesis protein NfuA K07400 nfuA; Fe/S biogenesis protein NfuA
D BER92_13340 xanthine dehydrogenase K07402 xdhC; xanthine dehydrogenase accessory factor
C 99976 Replication and repair
D BER92_18420 hypothetical protein K03630 radC; DNA repair protein RadC
D BER92_19245 recombinase RmuC K09760 rmuC; DNA recombination protein RmuC
D BER92_03695 YraN family protein K07460 yraN; putative endonuclease
D BER92_15810 endonuclease K07461 K07461; putative endonuclease
D BER92_04030 hypothetical protein K07461 K07461; putative endonuclease
D BER92_01000 DNA protecting protein DprA K04096 smf; DNA processing protein
D BER92_10125 recombination factor protein RarA K07478 ycaJ; putative ATPase
D BER92_09120 replication protein A K07505 repA; regulatory protein RepA
D BER92_00900 transposase K07481 K07481; transposase, IS5 family
D BER92_00905 transposase K07481 K07481; transposase, IS5 family
D BER92_01245 transposase K07481 K07481; transposase, IS5 family
D BER92_01310 hypothetical protein K07481 K07481; transposase, IS5 family
D BER92_01370 transposase K07481 K07481; transposase, IS5 family
D BER92_01380 transposase K07481 K07481; transposase, IS5 family
D BER92_01625 transposase K07481 K07481; transposase, IS5 family
D BER92_02215 transposase K07481 K07481; transposase, IS5 family
D BER92_03315 transposase K07481 K07481; transposase, IS5 family
D BER92_03370 transposase K07481 K07481; transposase, IS5 family
D BER92_03465 transposase K07481 K07481; transposase, IS5 family
D BER92_03660 transposase K07481 K07481; transposase, IS5 family
D BER92_03870 transposase K07481 K07481; transposase, IS5 family
D BER92_03030 transposase K07481 K07481; transposase, IS5 family
D BER92_03060 transposase K07481 K07481; transposase, IS5 family
D BER92_04505 transposase K07481 K07481; transposase, IS5 family
D BER92_04510 transposase K07481 K07481; transposase, IS5 family
D BER92_06340 transposase K07481 K07481; transposase, IS5 family
D BER92_05955 transposase K07481 K07481; transposase, IS5 family
D BER92_06270 transposase K07481 K07481; transposase, IS5 family
D BER92_13805 transposase K07481 K07481; transposase, IS5 family
D BER92_13960 transposase K07481 K07481; transposase, IS5 family
D BER92_18135 transposase K07481 K07481; transposase, IS5 family
D BER92_18475 transposase K07481 K07481; transposase, IS5 family
D BER92_06810 transposase K07481 K07481; transposase, IS5 family
D BER92_06815 transposase K07481 K07481; transposase, IS5 family
D BER92_07090 transposase K07481 K07481; transposase, IS5 family
D BER92_07160 transposase K07481 K07481; transposase, IS5 family
D BER92_07440 transposase K07481 K07481; transposase, IS5 family
D BER92_19160 transposase K07481 K07481; transposase, IS5 family
D BER92_07665 transposase K07481 K07481; transposase, IS5 family
D BER92_07845 transposase K07481 K07481; transposase, IS5 family
D BER92_08370 transposase K07481 K07481; transposase, IS5 family
D BER92_08825 transposase K07481 K07481; transposase, IS5 family
D BER92_08840 transposase K07481 K07481; transposase, IS5 family
D BER92_08975 transposase K07481 K07481; transposase, IS5 family
D BER92_16465 transposase K07481 K07481; transposase, IS5 family
D BER92_16875 transposase K07481 K07481; transposase, IS5 family
D BER92_17020 transposase K07481 K07481; transposase, IS5 family
D BER92_17545 transposase K07481 K07481; transposase, IS5 family
D BER92_15105 transposase K07481 K07481; transposase, IS5 family
D BER92_15240 transposase K07481 K07481; transposase, IS5 family
D BER92_15275 transposase K07481 K07481; transposase, IS5 family
D BER92_15395 transposase K07481 K07481; transposase, IS5 family
D BER92_15775 transposase K07481 K07481; transposase, IS5 family
D BER92_16365 transposase K07481 K07481; transposase, IS5 family
D BER92_11830 transposase K07481 K07481; transposase, IS5 family
D BER92_11930 transposase K07481 K07481; transposase, IS5 family
D BER92_12290 transposase K07481 K07481; transposase, IS5 family
D BER92_12480 transposase K07481 K07481; transposase, IS5 family
D BER92_12685 transposase K07481 K07481; transposase, IS5 family
D BER92_14175 hypothetical protein K07481 K07481; transposase, IS5 family
D BER92_14330 transposase K07481 K07481; transposase, IS5 family
D BER92_14555 transposase K07481 K07481; transposase, IS5 family
D BER92_14580 transposase K07481 K07481; transposase, IS5 family
D BER92_14705 transposase K07481 K07481; transposase, IS5 family
D BER92_14920 transposase K07481 K07481; transposase, IS5 family
D BER92_09065 transposase K07481 K07481; transposase, IS5 family
D BER92_09105 transposase K07481 K07481; transposase, IS5 family
D BER92_09155 transposase K07481 K07481; transposase, IS5 family
D BER92_09185 transposase K07481 K07481; transposase, IS5 family
D BER92_09770 transposase K07481 K07481; transposase, IS5 family
D BER92_10010 transposase K07481 K07481; transposase, IS5 family
D BER92_10120 transposase K07481 K07481; transposase, IS5 family
D BER92_10900 transposase K07481 K07481; transposase, IS5 family
D BER92_10600 transposase K07481 K07481; transposase, IS5 family
D BER92_10630 transposase K07481 K07481; transposase, IS5 family
D BER92_10750 transposase K07481 K07481; transposase, IS5 family
D BER92_11435 transposase K07481 K07481; transposase, IS5 family
D BER92_11635 transposase K07481 K07481; transposase, IS5 family
D BER92_11755 transposase K07481 K07481; transposase, IS5 family
D BER92_09250 transposase K07481 K07481; transposase, IS5 family
D BER92_06835 DNA-binding protein K07482 K07482; transposase, IS30 family
D BER92_04240 transposase K07482 K07482; transposase, IS30 family
D BER92_17565 transposase K07483 K07483; transposase
D BER92_17765 transposase K07483 K07483; transposase
D BER92_19030 transposase K07483 K07483; transposase
D BER92_06735 transposase K07483 K07483; transposase
D BER92_06825 transposase K07483 K07483; transposase
D BER92_07495 transposase K07483 K07483; transposase
D BER92_08075 transposase K07483 K07483; transposase
D BER92_07670 transposase K07483 K07483; transposase
D BER92_05580 transposase K07483 K07483; transposase
D BER92_09150 transposase K07483 K07483; transposase
D BER92_09695 transposase K07483 K07483; transposase
D BER92_09780 transposase K07483 K07483; transposase
D BER92_09955 transposase K07483 K07483; transposase
D BER92_01290 transposase K07483 K07483; transposase
D BER92_01935 transposase K07483 K07483; transposase
D BER92_02130 transposase K07483 K07483; transposase
D BER92_10670 transposase K07483 K07483; transposase
D BER92_02935 transposase K07483 K07483; transposase
D BER92_03200 transposase K07483 K07483; transposase
D BER92_11820 transposase K07483 K07483; transposase
D BER92_12465 transposase K07483 K07483; transposase
D BER92_04280 transposase K07483 K07483; transposase
D BER92_13820 transposase K07483 K07483; transposase
D BER92_05435 transposase K07483 K07483; transposase
D BER92_15225 transposase K07483 K07483; transposase
D BER92_16375 transposase K07483 K07483; transposase
D BER92_16450 transposase K07483 K07483; transposase
D BER92_16690 transposase K07483 K07483; transposase
D BER92_16860 transposase K07483 K07483; transposase
D BER92_02945 transposase K07483 K07483; transposase
D BER92_05770 transposase K07497 K07497; putative transposase
D BER92_00415 transposase K07497 K07497; putative transposase
D BER92_00460 transposase K07497 K07497; putative transposase
D BER92_01285 transposase K07497 K07497; putative transposase
D BER92_02135 transposase K07497 K07497; putative transposase
D BER92_03875 transposase K07497 K07497; putative transposase
D BER92_04040 transposase K07497 K07497; putative transposase
D BER92_02930 transposase K07497 K07497; putative transposase
D BER92_03065 transposase K07497 K07497; putative transposase
D BER92_03215 transposase K07497 K07497; putative transposase
D BER92_04285 transposase K07497 K07497; putative transposase
D BER92_05430 transposase K07497 K07497; putative transposase
D BER92_06335 transposase K07497 K07497; putative transposase
D BER92_17560 transposase K07497 K07497; putative transposase
D BER92_13260 transposase K07497 K07497; putative transposase
D BER92_13540 transposase K07497 K07497; putative transposase
D BER92_13715 transposase K07497 K07497; putative transposase
D BER92_13785 transposase K07497 K07497; putative transposase
D BER92_13815 transposase K07497 K07497; putative transposase
D BER92_06730 transposase K07497 K07497; putative transposase
D BER92_06830 transposase K07497 K07497; putative transposase
D BER92_07500 transposase K07497 K07497; putative transposase
D BER92_08085 transposase K07497 K07497; putative transposase
D BER92_19025 transposase K07497 K07497; putative transposase
D BER92_19300 transposase K07497 K07497; putative transposase
D BER92_07680 hypothetical protein K07497 K07497; putative transposase
D BER92_08615 transposase K07497 K07497; putative transposase
D BER92_16455 transposase K07497 K07497; putative transposase
D BER92_16680 hypothetical protein K07497 K07497; putative transposase
D BER92_16865 transposase K07497 K07497; putative transposase
D BER92_17325 transposase K07497 K07497; putative transposase
D BER92_14935 transposase K07497 K07497; putative transposase
D BER92_15220 transposase K07497 K07497; putative transposase
D BER92_15495 transposase K07497 K07497; putative transposase
D BER92_16380 transposase K07497 K07497; putative transposase
D BER92_11795 transposase K07497 K07497; putative transposase
D BER92_11815 transposase K07497 K07497; putative transposase
D BER92_12470 transposase K07497 K07497; putative transposase
D BER92_12780 transposase K07497 K07497; putative transposase
D BER92_09050 transposase K07497 K07497; putative transposase
D BER92_09160 transposase K07497 K07497; putative transposase
D BER92_09790 transposase K07497 K07497; putative transposase
D BER92_10560 transposase K07497 K07497; putative transposase
D BER92_10620 transposase K07497 K07497; putative transposase
D BER92_10665 transposase K07497 K07497; putative transposase
D BER92_11105 transposase K07497 K07497; putative transposase
D BER92_11110 integrase K07497 K07497; putative transposase
D BER92_11220 transposase K07497 K07497; putative transposase
D BER92_16205 hypothetical protein K07497 K07497; putative transposase
C 99979 Viral proteins
C 99998 Others
D BER92_19035 restriction endonuclease K07504 K07504; predicted type IV restriction endonuclease
D BER92_14080 nucleoid-associated protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D BER92_01085 cation transporter K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family
D BER92_14575 amino acid transporter K03293 TC.AAT; amino acid transporter, AAT family
D BER92_19255 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D BER92_09275 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D BER92_09280 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D BER92_03165 citrate transporter K03300 TC.CITMHS; citrate-Mg2+:H+ or citrate-Ca2+:H+ symporter, CitMHS family
D BER92_06575 MFS transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D BER92_00545 dihydroorotate dehydrogenase K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D BER92_08710 inorganic phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family
D BER92_10770 sodium transporter K03307 TC.SSS; solute:Na+ symporter, SSS family
D BER92_04685 Na+ dependent nucleoside transporter domain-containing protein K03317 TC.CNT; concentrative nucleoside transporter, CNT family
C 99978 Cell growth
D BER92_00125 peptidase M23 K22719 envC; murein hydrolase activator
C 99993 Cell motility
C 99995 Signaling proteins
D BER92_16350 hypothetical protein K03807 ampE; AmpE protein
D BER92_02180 GTP-binding protein TypA K06207 typA; GTP-binding protein
D BER92_06865 phosphate starvation-inducible protein PhoH K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D BER92_10980 phosphate starvation-inducible protein PhoH K07175 phoH2; PhoH-like ATPase
D BER92_08605 circadian clock protein KaiC K08482 kaiC; circadian clock protein KaiC
D BER92_15985 YajQ family cyclic di-GMP-binding protein K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
D BER92_10130 outer membrane lipoprotein carrier protein LolA K03634 lolA; outer membrane lipoprotein carrier protein
D BER92_05040 lipoprotein localization factor LolB K02494 lolB; outer membrane lipoprotein LolB
D BER92_19225 hypothetical protein K04754 mlaA; phospholipid-binding lipoprotein MlaA
D BER92_06660 peptidoglycan-associated outer membrane lipoprotein precursor K06077 slyB; outer membrane lipoprotein SlyB
D BER92_02860 hypothetical protein K06077 slyB; outer membrane lipoprotein SlyB
D BER92_08790 hypothetical protein K06194 nlpD; lipoprotein NlpD
D BER92_15960 hypothetical protein K07275 ompW; outer membrane protein
D BER92_16895 hypothetical protein K07275 ompW; outer membrane protein
D BER92_02620 hypothetical protein K07283 ydiY; putative salt-induced outer membrane protein
D BER92_14065 hypothetical protein K07285 slp; outer membrane lipoprotein
D BER92_05800 hypothetical protein K07290 yhjG; AsmA family protein
D BER92_08865 cytochrome c biogenesis protein CcmE K02197 ccmE; cytochrome c-type biogenesis protein CcmE
D BER92_08635 cytochrome C biogenesis protein K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D BER92_08845 cytochrome C biogenesis protein K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D BER92_08850 cytochrome C biogenesis protein K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D BER92_06045 polysaccharide biosynthesis protein GumC K13661 gumC; GumC protein
D BER92_06055 polysaccharide biosynthesis protein GumE K13662 gumE; putative polymerase
D BER92_10080 hypothetical protein K15539 rodZ; cytoskeleton protein RodZ
C 99994 Others
D BER92_08235 phosphate transport system regulatory protein PhoU K02039 phoU; phosphate transport system protein
D BER92_17915 bacterioferritin K02192 bfd; bacterioferritin-associated ferredoxin
D BER92_00330 glucan biosynthesis protein D K03670 mdoG; periplasmic glucans biosynthesis protein
D BER92_19290 hypothetical protein K05794 terC; tellurite resistance protein TerC
D BER92_17525 dihydroorotate dehydrogenase K03926 cutA; periplasmic divalent cation tolerance protein
D BER92_04215 copper homeostasis protein CutC K06201 cutC; copper homeostasis protein
D BER92_04730 Co2+/Mg2+ efflux protein ApaG K06195 apaG; ApaG protein
D BER92_15835 copper resistance protein CopB K07233 pcoB; copper resistance protein B
B
B 09194 Poorly characterized
C 99996 General function prediction only
D BER92_15365 colicin V synthesis protein K03558 cvpA; membrane protein required for colicin V production
D BER92_02880 BON domain-containing protein K04065 osmY; hyperosmotically inducible periplasmic protein
D BER92_04115 pyrroloquinoline quinone biosynthesis protein PqqB K06136 pqqB; pyrroloquinoline quinone biosynthesis protein B
D BER92_04105 pyrroloquinoline quinone biosynthesis protein PqqD K06138 pqqD; pyrroloquinoline quinone biosynthesis protein D
D BER92_01835 helicase K06877 K06877; DEAD/DEAH box helicase domain-containing protein
D BER92_07215 cyanoglobin K06886 glbN; hemoglobin
D BER92_18140 haloacid dehalogenase K07025 K07025; putative hydrolase of the HAD superfamily
D BER92_17880 iron-sulfur cluster insertion protein ErpA K15724 erpA; iron-sulfur cluster insertion protein
D BER92_13495 Fe-S cluster assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB
D BER92_13505 Fe-S cluster assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD
D BER92_04585 hypothetical protein K07038 K07038; inner membrane protein
D BER92_18240 BrkB protein K07058 K07058; membrane protein
D BER92_04995 hypothetical protein K07058 K07058; membrane protein
D BER92_11905 Fe-S cluster assembly protein SufE K02426 sufE; cysteine desulfuration protein SufE
D BER92_09740 sulfurtransferase K07146 K07146; UPF0176 protein
D BER92_10185 lysogenization regulator HflD K07153 hflD; high frequency lysogenization protein
D BER92_04605 LemA family protein K03744 lemA; LemA protein
D BER92_08145 hypothetical protein K03745 slyX; SlyX protein
D BER92_01005 hypothetical protein K03747 smg; Smg protein
D BER92_00955 hypothetical protein K08981 K08981; putative membrane protein
D BER92_05720 hypothetical protein K08987 K08987; putative membrane protein
D BER92_14645 hypothetical protein K08989 K08989; putative membrane protein
D BER92_19080 zinc chelation protein SecC K09858 K09858; SEC-C motif domain protein
D BER92_12315 phosphonoacetate hydrolase K06193 phnA; protein PhnA
C 99997 Function unknown
D BER92_18510 hypothetical protein K06867 K06867; uncharacterized protein
D BER92_01760 hypothetical protein K06867 K06867; uncharacterized protein
D BER92_04695 dehydrogenase K06872 K06872; uncharacterized protein
D BER92_09985 stress-induced protein K06884 K06884; uncharacterized protein
D BER92_06150 general stress protein K06884 K06884; uncharacterized protein
D BER92_00860 baseplate assembly protein K06903 W; Bacteriophage baseplate protein W
D BER92_00885 oxidoreductase K06906 gpU; phage tail protein
D BER92_00865 phage tail protein K06907 FI; Bacteriophage tail sheath protein
D BER92_00870 phage major tail tube protein K06908 FII; Bacteriophage tail tube protein
D BER92_17855 ferredoxin K06940 K06940; uncharacterized protein
D BER92_07035 phosphoesterase K06953 K06953; uncharacterized protein
D BER92_12230 dehydrogenase K06954 K06954; uncharacterized protein
D BER92_06590 GNAT family N-acetyltransferase K06975 K06975; uncharacterized protein
D BER92_14995 GNAT family N-acetyltransferase K06977 K06977; uncharacterized protein
D BER92_02495 methyltransferase K06983 K06983; uncharacterized protein
D BER92_07140 glyoxalase K06996 K06996; uncharacterized protein
D BER92_16610 nuclease K07004 K07004; uncharacterized protein
D BER92_16590 alpha/beta hydrolase K07018 K07018; uncharacterized protein
D BER92_01490 TIGR01777 family protein K07071 K07071; uncharacterized protein
D BER92_19085 hypothetical protein K07090 K07090; uncharacterized protein
D BER92_10780 alkaline phosphatase K07093 K07093; uncharacterized protein
D BER92_13485 SET domain-containing protein-lysine N-methyltransferase K07117 K07117; uncharacterized protein
D BER92_03700 LppC family lipoprotein K07121 K07121; uncharacterized protein
D BER92_07220 dehydrogenase K07124 K07124; uncharacterized protein
D BER92_13535 hypothetical protein K07126 K07126; uncharacterized protein
D BER92_12440 hypothetical protein K07148 K07148; uncharacterized protein
D BER92_03435 ATP-dependent protease K07157 K07157; uncharacterized protein
D BER92_03500 ACR family protein K09005 K09005; uncharacterized protein
D BER92_18235 glutamyl-tRNA amidotransferase K09117 K09117; uncharacterized protein
D BER92_02795 hypothetical protein K09158 K09158; uncharacterized protein
D BER92_08325 hypothetical protein K09164 K09164; uncharacterized protein
D BER92_12105 hypothetical protein K09164 K09164; uncharacterized protein
D BER92_00950 hypothetical protein K09167 K09167; uncharacterized protein
D BER92_12235 chromosome partitioning protein ParA K09701 K09701; uncharacterized protein
D BER92_15400 metal-independent alpha-mannosidase K09704 K09704; uncharacterized protein
D BER92_12990 DUF378 domain-containing protein K09779 K09779; uncharacterized protein
D BER92_08925 hypothetical protein K09780 K09780; uncharacterized protein
D BER92_17620 hypothetical protein K09781 K09781; uncharacterized protein
D BER92_06650 hypothetical protein K09793 K09793; uncharacterized protein
D BER92_01800 hypothetical protein K09799 K09799; uncharacterized protein
D BER92_07940 RnfH family protein K09801 K09801; uncharacterized protein
D BER92_12770 hypothetical protein K09807 K09807; uncharacterized protein
D BER92_03535 hypothetical protein K09895 K09895; uncharacterized protein
D BER92_01755 hypothetical protein K09902 K09902; uncharacterized protein
D BER92_04525 nucleoprotein/polynucleotide-associated enzyme K09912 K09912; uncharacterized protein
D BER92_00370 hypothetical protein K09915 K09915; uncharacterized protein
D BER92_10150 GNAT family N-acetyltransferase K09919 K09919; uncharacterized protein
D BER92_11710 hypothetical protein K09920 K09920; uncharacterized protein
D BER92_02675 hypothetical protein K09921 K09921; uncharacterized protein
D BER92_04665 hypothetical protein K09922 K09922; uncharacterized protein
D BER92_17800 hypothetical protein K09924 K09924; uncharacterized protein
D BER92_13845 hypothetical protein K09937 K09937; uncharacterized protein
D BER92_13600 hypothetical protein K09938 K09938; uncharacterized protein
D BER92_12730 hypothetical protein K09940 K09940; uncharacterized protein
D BER92_16000 hypothetical protein K09941 K09941; uncharacterized protein
D BER92_09075 deoxycytidine triphosphate deaminase K09948 K09948; uncharacterized protein
D BER92_12100 hypothetical protein K09973 K09973; uncharacterized protein
D BER92_13555 HutD-family protein K09975 K09975; uncharacterized protein
D BER92_14665 hypothetical protein K09980 K09980; uncharacterized protein
D BER92_01840 exonuclease K07502 yprB; uncharacterized protein
D BER92_08705 pit accessory protein K07220 K07220; uncharacterized protein
D BER92_17445 nucleoside-diphosphate sugar epimerase K07276 K07276; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 23, 2024