+D GENES KO
#
KEGG Orthology (KO) - Yersinia rochesterensis
%
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A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:ykr00010]
D CH54_1272 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D CH54_2915 phosphoglucose isomerase family protein K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D CH54_2671 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D CH54_2005 fructose-1-6-bisphosphatase family protein K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D CH54_2679 glpX; fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D CH54_3392 fbaA; fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D CH54_2674 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D CH54_127 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D CH54_577 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D CH54_3391 phosphoglycerate kinase family protein K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D CH54_1123 phosphoglycerate mutase 1 family protein K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D CH54_1851 histidine phosphatase super family protein K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D CH54_2659 gpmI; phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D CH54_1707 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D CH54_291 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D CH54_614 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D CH54_279 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D CH54_1756 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D CH54_1755 aceF; dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D CH54_2708 pyridine nucleotide-disulfide oxidoreductase family protein K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CH54_1754 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CH54_356 nifJ; ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D CH54_1031 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D CH54_551 aldehyde dehydrogenase family protein K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D CH54_3064 zinc-binding dehydrogenase family protein K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D CH54_2204 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D CH54_1121 galM; galactose mutarotase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D CH54_3878 histidine phosphatase super family protein K01085 agp; glucose-1-phosphatase [EC:3.1.3.10]
D CH54_2568 HAD hydrolase, IA, variant 3 family protein K20866 yihX; glucose-1-phosphatase [EC:3.1.3.10]
D CH54_1171 pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D CH54_578 aldose 1-epimerase family protein K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15]
D CH54_2318 pckA; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D CH54_2291 hypothetical protein K01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D CH54_3874 glycosyl hydrolase 1 family protein K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D CH54_3986 glycosyl hydrolase 1 family protein K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D CH54_1237 glycosyl hydrolase 1 family protein K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D CH54_1540 glycosyl hydrolase 1 family protein K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D CH54_1297 ptbA; PTS system, glucose subfamily, IIA component domain protein K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D CH54_86 ptsG; PTS system, glucose-specific IIBC component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
D CH54_447 PTS system, glucose-like IIB component domain protein K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D CH54_1238 PTS system, glucose-like IIB component domain protein K02753 ascF; beta-glucoside (arbutin/salicin/cellobiose) PTS system EIICB component [EC:2.7.1.-]
C 00020 Citrate cycle (TCA cycle) [PATH:ykr00020]
D CH54_1152 gltA; citrate (Si)-synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D CH54_493 acnA; aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D CH54_1750 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D CH54_119 icd; isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D CH54_1147 sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D CH54_1146 sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D CH54_2708 pyridine nucleotide-disulfide oxidoreductase family protein K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CH54_1754 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CH54_1144 sucD; succinate-CoA ligase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D CH54_1145 sucC; succinate-CoA ligase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D CH54_1149 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D CH54_1148 succinate dehydrogenase and fumarate reductase iron-sulfur family protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D CH54_1151 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D CH54_1150 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D CH54_2053 frdA; fumarate reductase, flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D CH54_2054 succinate dehydrogenase and fumarate reductase iron-sulfur family protein K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D CH54_2055 fumarate reductase subunit C family protein K00246 frdC; succinate dehydrogenase subunit C
D CH54_2056 fumarate reductase subunit D family protein K00247 frdD; succinate dehydrogenase subunit D
D CH54_1636 hydrolyase, tartrate alpha subunit/fumarate, Fe-S type domain protein K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D CH54_440 fumC; fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D CH54_2000 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D CH54_2318 pckA; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D CH54_1756 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D CH54_1755 aceF; dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D CH54_356 nifJ; ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
C 00030 Pentose phosphate pathway [PATH:ykr00030]
D CH54_2915 phosphoglucose isomerase family protein K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D CH54_612 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D CH54_1109 lactonase, 7-bladed beta-propeller family protein K07404 pgl; 6-phosphogluconolactonase [EC:3.1.1.31]
D CH54_2997 arylesterase family protein K07404 pgl; 6-phosphogluconolactonase [EC:3.1.1.31]
D CH54_986 gnd; 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D CH54_2302 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D CH54_3389 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D CH54_1844 tal; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D CH54_3398 rpiA; ribose 5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D CH54_4039 deoC; deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D CH54_1868 deoC; deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D CH54_2547 rbsK; ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D CH54_3716 metalloenzyme superfamily protein K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D CH54_1866 deoB; phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D CH54_1171 pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D CH54_1953 phnN; phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN K05774 phnN; ribose 1,5-bisphosphokinase [EC:2.7.4.23]
D CH54_659 prs; ribose-phosphate diphosphokinase family protein K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D CH54_3947 edd; phosphogluconate dehydratase K01690 edd; phosphogluconate dehydratase [EC:4.2.1.12]
D CH54_611 eda; 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase family protein K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D CH54_1387 GMC oxidoreductase family protein K19813 gdh; glucose dehydrogenase [EC:1.1.5.9]
D CH54_2481 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D CH54_2358 carbohydrate kinase, thermoresistant glucokinase family protein K00851 idnK; gluconokinase [EC:2.7.1.12]
D CH54_3941 carbohydrate kinase, thermoresistant glucokinase family protein K00851 idnK; gluconokinase [EC:2.7.1.12]
D CH54_2399 pfkB carbohydrate kinase family protein K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
D CH54_3392 fbaA; fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D CH54_2005 fructose-1-6-bisphosphatase family protein K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D CH54_2679 glpX; fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D CH54_2671 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C 00040 Pentose and glucuronate interconversions [PATH:ykr00040]
D CH54_2402 periplasmic pectate lyase family protein K01728 pel; pectate lyase [EC:4.2.2.2]
D CH54_231 periplasmic pectate lyase family protein K01731 pelW; pectate disaccharide-lyase [EC:4.2.2.9]
D CH54_221 oligogalacturonate lyase family protein K01730 ogl; oligogalacturonide lyase [EC:4.2.2.6]
D CH54_234 cupin domain protein K26933 kdgF; unsaturated pyranuronate lyase [EC:4.2.99.25]
D CH54_233 kduI/IolB family protein K01815 kduI; 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [EC:5.3.1.17]
D CH54_232 kduD; 2-deoxy-D-gluconate 3-dehydrogenase K00065 kduD; 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase [EC:1.1.1.127]
D CH54_3078 glucuronate isomerase family protein K01812 uxaC; glucuronate isomerase [EC:5.3.1.12]
D CH54_3079 mannitol dehydrogenase Rossmann domain protein K00041 uxaB; tagaturonate reductase [EC:1.1.1.58]
D CH54_3080 hypothetical protein K01685 uxaA; altronate hydrolase [EC:4.2.1.7]
D CH54_4006 uxuA; mannonate dehydratase K01686 uxuA; mannonate dehydratase [EC:4.2.1.8]
D CH54_4005 mannitol dehydrogenase Rossmann domain protein K00040 uxuB; fructuronate reductase [EC:1.1.1.57]
D CH54_556 nucleotide sugar dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D CH54_987 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CH54_988 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CH54_483 araD; L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D CH54_2302 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D CH54_457 L-arabinose isomerase family protein K01804 araA; L-arabinose isomerase [EC:5.3.1.4]
D CH54_456 araB; ribulokinase K00853 araB; L-ribulokinase [EC:2.7.1.16]
D CH54_2445 xylB; xylulokinase K00854 xylB; xylulokinase [EC:2.7.1.17]
D CH54_2444 xylA; xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
C 00051 Fructose and mannose metabolism [PATH:ykr00051]
D CH54_3639 glucokinase family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D CH54_441 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D CH54_2671 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D CH54_2005 fructose-1-6-bisphosphatase family protein K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D CH54_2679 glpX; fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D CH54_2468 mannitol dehydrogenase Rossmann domain protein K00009 mtlD; mannitol-1-phosphate 5-dehydrogenase [EC:1.1.1.17]
D CH54_1379 short chain dehydrogenase family protein K00068 srlD; sorbitol-6-phosphate 2-dehydrogenase [EC:1.1.1.140]
D CH54_1647 3-beta hydroxysteroid dehydrogenase/isomerase family protein K00068 srlD; sorbitol-6-phosphate 2-dehydrogenase [EC:1.1.1.140]
D CH54_1652 zinc-binding dehydrogenase family protein K19956 sorE; L-sorbose 1-phosphate reductase [EC:1.1.1.-]
D CH54_4013 pfkB; 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D CH54_2444 xylA; xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D CH54_3392 fbaA; fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D CH54_2674 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D CH54_4014 PTS system, Fru family, IIB component domain protein K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D CH54_163 PTS system, mannose/fructose/sorbose, IIB component family protein K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D CH54_162 PTS system, mannose/fructose/sorbose, IIC component family protein K02795 manY; mannose PTS system EIIC component
D CH54_161 PTS system, mannose/fructose/sorbose, IID component family protein K02796 manZ; mannose PTS system EIID component
D CH54_2469 mtlA; PTS system, mannitol-specific IIC component family protein K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D CH54_3917 HAD hydrolase, IA, variant 1 family protein K19270 hxpA; mannitol-1-/sugar-/sorbitol-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50]
D CH54_235 HAD hydrolase, IA, variant 1 family protein K24204 hxpB; mannitol-1-/sugar-/sorbitol-6-/2-deoxyglucose-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50 3.1.3.68]
D CH54_1378 PTS system glucitol/sorbitol-specific IIA component family protein K02781 srlB; glucitol/sorbitol PTS system EIIA component [EC:2.7.1.198]
D CH54_1377 PTS system, glucitol/sorbitol-specific, IIBC component family protein K02782 srlE; glucitol/sorbitol PTS system EIIB component [EC:2.7.1.198]
D CH54_1376 srlA; PTS system, glucitol/sorbitol-specific, IIC component family protein K02783 srlA; glucitol/sorbitol PTS system EIIC component
D CH54_1648 PTS system, mannose/fructose/sorbose family, IIA component domain protein K02812 sorF; sorbose PTS system EIIA component [EC:2.7.1.206]
D CH54_1649 PTS system, mannose/fructose/sorbose, IIB component family protein K02813 sorB; sorbose PTS system EIIB component [EC:2.7.1.206]
D CH54_1650 PTS system, mannose/fructose/sorbose, IIC component family protein K02814 sorA; sorbose PTS system EIIC component
D CH54_1651 PTS system, mannose/fructose/sorbose, IID component family protein K02815 sorM; sorbose PTS system EIID component
C 00052 Galactose metabolism [PATH:ykr00052]
D CH54_1121 galM; galactose mutarotase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D CH54_1120 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D CH54_1119 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D CH54_1118 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CH54_3741 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CH54_987 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CH54_988 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CH54_1171 pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D CH54_1272 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D CH54_825 glycosyl hydrolases 2 family protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D CH54_2671 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D CH54_3648 alpha amylase, catalytic domain protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D CH54_3446 glycosyl hydrolases 31 family protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
C 00053 Ascorbate and aldarate metabolism [PATH:ykr00053]
D CH54_556 nucleotide sugar dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D CH54_3911 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 family protein K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D CH54_3910 PTS system, Lactose/Cellobiose specific IIB subunit K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D CH54_3909 PTS system sugar-specific permease component family protein K03475 ulaA; ascorbate PTS system EIIC component
D CH54_483 araD; L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D CH54_2079 garL; 2-dehydro-3-deoxyglucarate aldolase K01630 garL; 2-dehydro-3-deoxyglucarate aldolase [EC:4.1.2.20]
D CH54_2075 garD; galactarate dehydratase K01708 garD; galactarate dehydratase [EC:4.2.1.42]
C 00500 Starch and sucrose metabolism [PATH:ykr00500]
D CH54_3648 alpha amylase, catalytic domain protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D CH54_3446 glycosyl hydrolases 31 family protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D CH54_987 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CH54_988 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CH54_2408 bcsA; cellulose synthase catalytic subunit K00694 bcsA; cellulose synthase (UDP-forming) [EC:2.4.1.12]
D CH54_3873 PTS system, Lactose/Cellobiose specific IIA subunit K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D CH54_1539 PTS system, Lactose/Cellobiose specific IIA subunit K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D CH54_3876 PTS system, Lactose/Cellobiose specific IIB subunit K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D CH54_1542 PTS system, lactose/cellobiose family IIB component domain protein K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D CH54_3875 PTS system, lactose/cellobiose IIC component family protein K02761 celB; cellobiose PTS system EIIC component
D CH54_1541 celB; PTS system, cellobiose-specific IIC component K02761 celB; cellobiose PTS system EIIC component
D CH54_2291 hypothetical protein K01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D CH54_3874 glycosyl hydrolase 1 family protein K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D CH54_3986 glycosyl hydrolase 1 family protein K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D CH54_1237 glycosyl hydrolase 1 family protein K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D CH54_1540 glycosyl hydrolase 1 family protein K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D CH54_2345 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D CH54_832 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D CH54_2344 glgA; glycogen/starch synthase, ADP-glucose type family protein K00703 glgA; starch synthase [EC:2.4.1.21]
D CH54_2347 glgB; 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D CH54_2335 glgP; glycogen/starch/alpha-glucan phosphorylases family protein K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D CH54_2343 glgP; glycogen/starch/alpha-glucan phosphorylases family protein K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D CH54_2346 glgX; glycogen debranching enzyme GlgX K02438 glgX; glycogen debranching enzyme [EC:3.2.1.196]
D CH54_2482 alpha amylase, catalytic domain protein K01176 AMY; alpha-amylase [EC:3.2.1.1]
D CH54_733 alpha amylase, catalytic domain protein K01176 AMY; alpha-amylase [EC:3.2.1.1]
D CH54_2334 malQ; 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D CH54_1297 ptbA; PTS system, glucose subfamily, IIA component domain protein K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D CH54_447 PTS system, glucose-like IIB component domain protein K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D CH54_3623 PTS system, alpha-glucoside-specific IIBC component domain protein K02750 glvC; alpha-glucoside PTS system EIICB component [EC:2.7.1.208 2.7.1.-]
D CH54_3624 4 glycosyl hydrolase family protein K01232 glvA; maltose-6'-phosphate glucosidase [EC:3.2.1.122]
D CH54_3001 treP; PTS system, trehalose-specific IIBC component K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D CH54_3002 treC; alpha,alpha-phosphotrehalase K01226 treC; trehalose-6-phosphate hydrolase [EC:3.2.1.93]
D CH54_1171 pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D CH54_1272 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D CH54_2915 phosphoglucose isomerase family protein K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D CH54_3639 glucokinase family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:ykr00520]
D CH54_98 hypothetical protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D CH54_3098 hypothetical protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D CH54_1179 glycosyl hydrolase family 20, catalytic domain protein K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D CH54_1297 ptbA; PTS system, glucose subfamily, IIA component domain protein K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D CH54_1183 nagE; PTS system, N-acetylglucosamine-specific IIBC component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D CH54_107 glucokinase family protein K00884 NAGK; N-acetylglucosamine kinase [EC:2.7.1.59]
D CH54_1185 nagA; N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D CH54_1184 nagB; glucosamine-6-phosphate deaminase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6]
D CH54_3639 glucokinase family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D CH54_2523 glmS; glutamine-fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D CH54_1984 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D CH54_2524 glmU; UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D CH54_3095 phosphotransferase system, EIIC family protein K11192 murP; N-acetylmuramic acid PTS system EIICB component [EC:2.7.1.192]
D CH54_1489 murQ; N-acetylmuramic acid 6-phosphate etherase K07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126]
D CH54_3096 murQ; N-acetylmuramic acid 6-phosphate etherase K07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126]
D CH54_319 hypothetical protein K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
D CH54_3024 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D CH54_2862 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D CH54_1308 ROK family protein K00885 nanK; N-acylmannosamine kinase [EC:2.7.1.60]
D CH54_1309 N-acetylmannosamine-6-phosphate epimerase family protein K01788 nanE; N-acylglucosamine-6-phosphate 2-epimerase [EC:5.1.3.9]
D CH54_1310 dihydrodipicolinate synthetase family protein K01639 E4.1.3.3; N-acetylneuraminate lyase [EC:4.1.3.3]
D CH54_2752 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D CH54_2753 nucleotide sugar dehydrogenase family protein K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
D CH54_3603 3-beta hydroxysteroid dehydrogenase/isomerase family protein K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-]
D CH54_266 3-beta hydroxysteroid dehydrogenase/isomerase family protein K10011 arnA; UDP-4-amino-4-deoxy-L-arabinose formyltransferase / UDP-glucuronic acid dehydrogenase (UDP-4-keto-hexauronic acid decarboxylating) [EC:2.1.2.13 1.1.1.305]
D CH54_264 beta-eliminating lyase family protein K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87]
D CH54_265 glycosyltransferase like 2 family protein K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53]
D CH54_267 polysaccharide deacetylase family protein K13014 arnD; undecaprenyl phosphate-alpha-L-ara4FN deformylase [EC:3.5.1.-]
D CH54_86 ptsG; PTS system, glucose-specific IIBC component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
D CH54_447 PTS system, glucose-like IIB component domain protein K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D CH54_1272 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D CH54_1171 pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D CH54_987 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CH54_988 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CH54_556 nucleotide sugar dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D CH54_1120 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D CH54_1119 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D CH54_1118 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CH54_3741 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CH54_163 PTS system, mannose/fructose/sorbose, IIB component family protein K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D CH54_162 PTS system, mannose/fructose/sorbose, IIC component family protein K02795 manY; mannose PTS system EIIC component
D CH54_161 PTS system, mannose/fructose/sorbose, IID component family protein K02796 manZ; mannose PTS system EIID component
D CH54_2915 phosphoglucose isomerase family protein K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D CH54_441 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D CH54_2345 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D CH54_832 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
C 00620 Pyruvate metabolism [PATH:ykr00620]
D CH54_2204 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D CH54_356 nifJ; ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D CH54_1756 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D CH54_1755 aceF; dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D CH54_2708 pyridine nucleotide-disulfide oxidoreductase family protein K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CH54_1754 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CH54_4087 pflB; formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D CH54_551 aldehyde dehydrogenase family protein K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D CH54_1031 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D CH54_3064 zinc-binding dehydrogenase family protein K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D CH54_3914 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D CH54_3913 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D CH54_291 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D CH54_614 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D CH54_3536 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D CH54_2964 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D CH54_2963 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D CH54_3893 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D CH54_25 acylphosphatase family protein K01512 acyP; acylphosphatase [EC:3.6.1.7]
D CH54_4062 thiamine pyrophosphate enzyme, central domain protein K00156 poxB; pyruvate dehydrogenase (quinone) [EC:1.2.5.1]
D CH54_360 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28]
D CH54_1083 FAD binding domain protein K03777 dld; D-lactate dehydrogenase (quinone) [EC:1.1.5.12]
D CH54_306 gloA; lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D CH54_1588 gloB; hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D CH54_4113 beta-lactamase superfamily domain protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D CH54_644 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]
D CH54_2481 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D CH54_1004 malic enzyme, NAD binding domain protein K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D CH54_1317 malic enzyme, NAD binding domain protein K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D CH54_2000 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D CH54_1636 hydrolyase, tartrate alpha subunit/fumarate, Fe-S type domain protein K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D CH54_440 fumC; fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D CH54_2053 frdA; fumarate reductase, flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D CH54_2054 succinate dehydrogenase and fumarate reductase iron-sulfur family protein K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D CH54_2055 fumarate reductase subunit C family protein K00246 frdC; succinate dehydrogenase subunit C
D CH54_2056 fumarate reductase subunit D family protein K00247 frdD; succinate dehydrogenase subunit D
D CH54_2695 phosphoenolpyruvate carboxylase family protein K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D CH54_2318 pckA; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D CH54_279 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D CH54_2905 aceB; malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9]
D CH54_1796 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:ykr00630]
D CH54_2906 aceA; isocitrate lyase K01637 E4.1.3.1; isocitrate lyase [EC:4.1.3.1]
D CH54_2204 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D CH54_2905 aceB; malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9]
D CH54_2000 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D CH54_1152 gltA; citrate (Si)-synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D CH54_493 acnA; aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D CH54_1750 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D CH54_3956 catalase family protein K03781 katE; catalase [EC:1.11.1.6]
D CH54_644 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]
D CH54_2481 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D CH54_2301 gph; phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D CH54_2566 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CH54_1475 beta-eliminating lyase family protein K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D CH54_3408 gcvP; glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D CH54_3406 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D CH54_2708 pyridine nucleotide-disulfide oxidoreductase family protein K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CH54_1754 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CH54_3407 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D CH54_2078 2-hydroxy-3-oxopropionate reductase K00042 garR; 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60]
D CH54_2077 glycerate kinase family protein K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D CH54_611 eda; 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase family protein K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D CH54_2459 fdnG; formate dehydrogenase-N alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D CH54_2460 molybdopterin oxidoreductase Fe4S4 domain protein K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D CH54_2458 fdxH; formate dehydrogenase, beta subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D CH54_2457 formate dehydrogenase, gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma
D CH54_561 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D CH54_675 hutG; N-formylglutamate deformylase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68]
C 00640 Propanoate metabolism [PATH:ykr00640]
D CH54_2204 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D CH54_3914 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D CH54_960 ackA; acetate kinase K19697 pduW; propionate kinase [EC:2.7.2.15]
D CH54_3913 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D CH54_950 propanediol utilization PduL family protein K13923 pduL; phosphate propanoyltransferase [EC:2.3.1.222]
D CH54_2708 pyridine nucleotide-disulfide oxidoreductase family protein K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CH54_1754 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CH54_4087 pflB; formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D CH54_2968 quinone oxidoreductase, YhdH/YhfP family protein K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-]
D CH54_2852 fadB; fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D CH54_3859 fadJ; fatty oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D CH54_3536 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D CH54_2964 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D CH54_2963 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D CH54_3893 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D CH54_1145 sucC; succinate-CoA ligase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D CH54_1144 sucD; succinate-CoA ligase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D CH54_2370 mmsA; methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D CH54_1750 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D CH54_19 mgsA; methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3]
D CH54_3135 iron-containing alcohol dehydrogenase family protein K08325 yqhD; NADP-dependent alcohol dehydrogenase [EC:1.1.-.-]
D CH54_1894 iron-containing alcohol dehydrogenase family protein K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6]
D CH54_943 dehydratase large subunit K01699 pduC; propanediol dehydratase large subunit [EC:4.2.1.28]
D CH54_944 dehydratase medium subunit K13919 pduD; propanediol dehydratase medium subunit [EC:4.2.1.28]
D CH54_945 dehydratase small subunit K13920 pduE; propanediol dehydratase small subunit [EC:4.2.1.28]
D CH54_955 iron-containing alcohol dehydrogenase family protein K13921 pduQ; 1-propanol dehydrogenase
D CH54_954 aldehyde dehydrogenase family protein K13922 pduP; propionaldehyde dehydrogenase [EC:1.2.1.87]
C 00650 Butanoate metabolism [PATH:ykr00650]
D CH54_2852 fadB; fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D CH54_3859 fadJ; fatty oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D CH54_2502 NAD(P)H binding domain of trans-2-enoyl-CoA reductase family protein K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D CH54_551 aldehyde dehydrogenase family protein K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D CH54_1149 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D CH54_1148 succinate dehydrogenase and fumarate reductase iron-sulfur family protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D CH54_1151 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D CH54_1150 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D CH54_2053 frdA; fumarate reductase, flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D CH54_2054 succinate dehydrogenase and fumarate reductase iron-sulfur family protein K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D CH54_2055 fumarate reductase subunit C family protein K00246 frdC; succinate dehydrogenase subunit C
D CH54_2056 fumarate reductase subunit D family protein K00247 frdD; succinate dehydrogenase subunit D
D CH54_3092 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D CH54_2982 succinate-semialdehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D CH54_4087 pflB; formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D CH54_356 nifJ; ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D CH54_392 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D CH54_2727 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D CH54_1792 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D CH54_391 ACT domain protein K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D CH54_1791 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D CH54_2728 ACT domain protein K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:ykr00660]
D CH54_392 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D CH54_2727 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D CH54_1792 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D CH54_391 ACT domain protein K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D CH54_1791 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D CH54_2728 ACT domain protein K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D CH54_1145 sucC; succinate-CoA ligase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D CH54_1144 sucD; succinate-CoA ligase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D CH54_1798 leuC; 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D CH54_1799 leuD; 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D CH54_1797 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:ykr00562]
D CH54_355 phosphatidylinositol-specific phospholipase C, X domain protein K01771 plc; 1-phosphatidylinositol phosphodiesterase [EC:4.6.1.13]
D CH54_1470 inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D CH54_831 histidine phosphatase super family protein K01093 appA; 4-phytase / acid phosphatase [EC:3.1.3.26 3.1.3.2]
D CH54_2365 hypothetical protein K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D CH54_2371 xylose isomerase-like TIM barrel family protein K06606 iolI; 2-keto-myo-inositol isomerase [EC:5.3.99.11]
D CH54_2363 iolE; myo-inosose-2 dehydratase K03335 iolE; inosose dehydratase [EC:4.2.1.44]
D CH54_2366 iolD; 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase K03336 iolD; 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) [EC:3.7.1.22]
D CH54_2369 iolB; 5-deoxy-glucuronate isomerase K03337 iolB; 5-deoxy-glucuronate isomerase [EC:5.3.1.30]
D CH54_2367 iolC; 5-dehydro-2-deoxygluconokinase K03338 iolC; 5-dehydro-2-deoxygluconokinase [EC:2.7.1.92]
D CH54_2370 mmsA; methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D CH54_2674 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:ykr00190]
D CH54_3925 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 family protein K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D CH54_3926 NADH-quinone oxidoreductase, B subunit K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D CH54_3927 nuoD; NADH dehydrogenase (quinone), D subunit K13378 nuoCD; NADH-quinone oxidoreductase subunit C/D [EC:7.1.1.2]
D CH54_3928 nuoE; NADH-quinone oxidoreductase, E subunit K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D CH54_3929 nuoF; NADH oxidoreductase (quinone), F subunit K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D CH54_3930 nuoG; NADH dehydrogenase (quinone), G subunit K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D CH54_3931 NADH dehydrogenase family protein K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D CH54_3932 NADH-quinone oxidoreductase, chain I family protein K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D CH54_3933 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D CH54_3934 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L family protein K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D CH54_3935 proton-translocating NADH-quinone oxidoreductase, chain L family protein K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D CH54_3936 proton-translocating NADH-quinone oxidoreductase, chain M family protein K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D CH54_3937 proton-translocating NADH-quinone oxidoreductase, chain N family protein K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D CH54_100 pyridine nucleotide-disulfide oxidoreductase family protein K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D CH54_1149 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D CH54_1148 succinate dehydrogenase and fumarate reductase iron-sulfur family protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D CH54_1151 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D CH54_1150 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D CH54_2053 frdA; fumarate reductase, flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D CH54_2054 succinate dehydrogenase and fumarate reductase iron-sulfur family protein K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D CH54_2055 fumarate reductase subunit C family protein K00246 frdC; succinate dehydrogenase subunit C
D CH54_2056 fumarate reductase subunit D family protein K00247 frdD; succinate dehydrogenase subunit D
D CH54_3676 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D CH54_3677 cyoD; cytochrome o ubiquinol oxidase subunit IV K02300 cyoD; cytochrome o ubiquinol oxidase subunit IV
D CH54_3678 cyoC; cytochrome o ubiquinol oxidase, subunit III K02299 cyoC; cytochrome o ubiquinol oxidase subunit III
D CH54_3679 cyoB; cytochrome o ubiquinol oxidase, subunit I K02298 cyoB; cytochrome o ubiquinol oxidase subunit I [EC:7.1.1.3]
D CH54_3680 cyoA; ubiquinol oxidase, subunit II K02297 cyoA; cytochrome o ubiquinol oxidase subunit II [EC:7.1.1.3]
D CH54_1142 bacterial Cytochrome Ubiquinol Oxidase family protein K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D CH54_684 bacterial Cytochrome Ubiquinol Oxidase family protein K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D CH54_1141 cydB; cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D CH54_685 cydB; cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D CH54_1140 cyd operon protein YbgT K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7]
D CH54_2528 atpA; ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D CH54_2526 atpD; ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D CH54_2527 atpG; ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D CH54_2529 atpH; ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D CH54_2525 atpC; ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D CH54_2532 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D CH54_2530 atpF; ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D CH54_2531 atpE; ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D CH54_2007 inorganic pyrophosphatase family protein K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D CH54_1361 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms
C 00720 Carbon fixation pathways in prokaryotes
C 00680 Methane metabolism [PATH:ykr00680]
D CH54_1031 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D CH54_1032 fghA; S-formylglutathione hydrolase K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12]
D CH54_2459 fdnG; formate dehydrogenase-N alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D CH54_2460 molybdopterin oxidoreductase Fe4S4 domain protein K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D CH54_2458 fdxH; formate dehydrogenase, beta subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D CH54_2457 formate dehydrogenase, gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma
D CH54_2070 formate dehydrogenase, alpha subunit K22015 fdhF; formate dehydrogenase (hydrogenase) [EC:1.17.98.4 1.17.98.-]
D CH54_1020 formate dehydrogenase, alpha subunit K22015 fdhF; formate dehydrogenase (hydrogenase) [EC:1.17.98.4 1.17.98.-]
D CH54_1475 beta-eliminating lyase family protein K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D CH54_1707 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D CH54_2695 phosphoenolpyruvate carboxylase family protein K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D CH54_2000 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D CH54_3392 fbaA; fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D CH54_2005 fructose-1-6-bisphosphatase family protein K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D CH54_2679 glpX; fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D CH54_2671 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D CH54_3914 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D CH54_3913 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D CH54_2204 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D CH54_279 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D CH54_1123 phosphoglycerate mutase 1 family protein K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D CH54_1851 histidine phosphatase super family protein K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D CH54_2659 gpmI; phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D CH54_3399 ACT domain protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D CH54_4092 serC; phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D CH54_1863 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 00910 Nitrogen metabolism [PATH:ykr00910]
D CH54_1323 napA; periplasmic nitrate reductase, large subunit K02567 napA; nitrate reductase (cytochrome) [EC:1.9.6.1]
D CH54_1322 nitrate reductase cytochrome c-type subunit family protein K02568 napB; nitrate reductase (cytochrome), electron transfer subunit
D CH54_2296 nirB; nitrite reductase [NAD(P)H], large subunit K00362 nirB; nitrite reductase (NADH) large subunit [EC:1.7.1.15]
D CH54_2297 nirD; nitrite reductase [NAD(P)H], small subunit K00363 nirD; nitrite reductase (NADH) small subunit [EC:1.7.1.15]
D CH54_37 cytochrome c552 family protein K03385 nrfA; nitrite reductase (cytochrome c-552) [EC:1.7.2.2]
D CH54_4064 hcp; hydroxylamine reductase K05601 hcp; hydroxylamine reductase [EC:1.7.99.1]
D CH54_2387 glu/Leu/Phe/Val dehydrogenase, dimerization domain protein K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D CH54_2566 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CH54_3035 glutamine amidotransferases class-II family protein K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D CH54_3034 glutamate synthase, small subunit domain protein K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D CH54_1738 carbonic anhydrase family protein K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
D CH54_3453 Tat (twin-arginine translocation) pathway signal sequence domain protein K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:ykr00920]
D CH54_1304 sulfate ABC transporter, sulfate-binding family protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D CH54_2672 sulfate ABC transporter, sulfate-binding family protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D CH54_1303 cysT; sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D CH54_1302 cysW; sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D CH54_1301 cysA; sulfate ABC transporter, ATP-binding family protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D CH54_2277 tauA; taurine ABC transporter, periplasmic binding protein K15551 tauA; taurine transport system substrate-binding protein
D CH54_2275 binding--dependent transport system inner membrane component family protein K15552 tauC; taurine transport system permease protein
D CH54_2276 ABC transporter family protein K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7]
D CH54_2273 taurine catabolism dioxygenase TauD, TfdA family protein K03119 tauD; taurine dioxygenase [EC:1.14.11.17]
D CH54_3295 bacterial extracellular solute-binding s, 3 family protein K15553 ssuA; sulfonate transport system substrate-binding protein
D CH54_3297 binding--dependent transport system inner membrane component family protein K15554 ssuC; sulfonate transport system permease protein
D CH54_3296 ABC transporter family protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D CH54_1693 cysN; sulfate adenylyltransferase, large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D CH54_1694 cysD; sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D CH54_1692 cysC; adenylyl-sulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D CH54_2014 cysQ; 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D CH54_1697 cysH; phosphoadenosine phosphosulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D CH54_1699 sulfite reductase [NADPH] flavoprotein, alpha-component K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
D CH54_1698 cysI; sulfite reductase (NADPH) hemoprotein, beta-component K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
D CH54_1704 pyridine nucleotide-disulfide oxidoreductase family protein K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4]
D CH54_1073 rhodanese-like domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D CH54_2337 rhodanese-like domain protein K02439 glpE; thiosulfate sulfurtransferase [EC:2.8.1.1]
D CH54_2664 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D CH54_1294 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D CH54_3697 pyridoxal-phosphate dependent enzyme family protein K01738 cysK; cysteine synthase [EC:2.5.1.47]
D CH54_2904 metA; homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D CH54_2692 metB; O-succinylhomoserine (thiol)-lyase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D CH54_1635 anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family protein K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]
D CH54_1256 anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family protein K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]
D CH54_1634 dmsB; dimethylsulfoxide reductase, chain B K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B
D CH54_1257 dmsB; dimethylsulfoxide reductase, chain B K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B
D CH54_1633 DMSO reductase anchor subunit family protein K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C
D CH54_1258 DMSO reductase anchor subunit family protein K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:ykr00061]
D CH54_3536 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D CH54_2964 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D CH54_2963 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D CH54_3893 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D CH54_79 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
D CH54_1659 phosphopantetheine attachment site family protein K02078 acpP; acyl carrier protein
D CH54_77 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D CH54_76 fabH; 3-oxoacyl-[acyl-carrier-] synthase III family protein K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D CH54_3869 hypothetical protein K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D CH54_7 fabF; beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D CH54_80 fabF; beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D CH54_1661 hypothetical protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D CH54_387 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CH54_78 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CH54_1658 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CH54_9 fabA; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D CH54_3531 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D CH54_2502 NAD(P)H binding domain of trans-2-enoyl-CoA reductase family protein K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D CH54_604 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D CH54_1793 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:ykr00071]
D CH54_2851 fadA; acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D CH54_3858 fadI; acetyl-CoA C-acyltransferase FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D CH54_2852 fadB; fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D CH54_3859 fadJ; fatty oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D CH54_3579 hypothetical protein K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-]
D CH54_604 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D CH54_1793 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D CH54_3479 acyltransferase family protein K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20]
D CH54_1031 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D CH54_551 aldehyde dehydrogenase family protein K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:ykr00561]
D CH54_2077 glycerate kinase family protein K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D CH54_3064 zinc-binding dehydrogenase family protein K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D CH54_1893 dhaK; dihydroxyacetone kinase, DhaK subunit K05878 dhaK; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaK [EC:2.7.1.121]
D CH54_1892 dhaL; dihydroxyacetone kinase, L subunit K05879 dhaL; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaL [EC:2.7.1.121]
D CH54_1891 dihydroxyacetone kinase, phosphotransfer subunit K05881 dhaM; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaM [EC:2.7.1.121]
D CH54_1894 iron-containing alcohol dehydrogenase family protein K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6]
D CH54_2680 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D CH54_2926 plsB; glycerol-3-phosphate O-acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D CH54_75 plsX; fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D CH54_3107 plsY; acyl-phosphate glycerol 3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D CH54_3131 1-acylglycerol-3-phosphate O-acyltransferases domain protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D CH54_2927 prokaryotic diacylglycerol kinase family protein K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
C 00564 Glycerophospholipid metabolism [PATH:ykr00564]
D CH54_2663 ketopantoate reductase PanE/ApbA family protein K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D CH54_2342 FAD dependent oxidoreductase family protein K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D CH54_2796 glpA; glycerol-3-phosphate dehydrogenase, anaerobic, A subunit K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D CH54_2797 glpB; glycerol-3-phosphate dehydrogenase, anaerobic, B subunit K00112 glpB; glycerol-3-phosphate dehydrogenase subunit B [EC:1.1.5.3]
D CH54_2798 glpC; glycerol-3-phosphate dehydrogenase, anaerobic, C subunit K00113 glpC; glycerol-3-phosphate dehydrogenase subunit C
D CH54_2926 plsB; glycerol-3-phosphate O-acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D CH54_3107 plsY; acyl-phosphate glycerol 3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D CH54_3131 1-acylglycerol-3-phosphate O-acyltransferases domain protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D CH54_3611 cytidyltransferase-like domain protein K00980 tagD; glycerol-3-phosphate cytidylyltransferase [EC:2.7.7.39]
D CH54_2927 prokaryotic diacylglycerol kinase family protein K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D CH54_2788 phospholipase A1 family protein K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D CH54_2792 prolyl oligopeptidase family protein K01048 pldB; lysophospholipase [EC:3.1.1.5]
D CH54_2794 glycerophosphoryl diester phosphodiesterase family protein K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D CH54_2829 glycerophosphoryl diester phosphodiesterase family protein K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D CH54_3479 acyltransferase family protein K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20]
D CH54_2395 CDP-diacylglycerol pyrophosphatase family protein K01521 cdh; CDP-diacylglycerol pyrophosphatase [EC:3.6.1.26]
D CH54_838 cytidylyltransferase family protein K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D CH54_3526 cytidylyltransferase family protein K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D CH54_3561 phospholipase D family protein K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D CH54_2050 psd; phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D CH54_728 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D CH54_3667 phosphatidylglycerophosphatase A family protein K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
D CH54_491 PAP2 superfamily protein K01096 pgpB; phosphatidylglycerophosphatase B [EC:3.1.3.27 3.6.1.75 3.1.3.4 3.6.1.27]
D CH54_1488 haloacid dehalogenase-like hydrolase family protein K18697 pgpC; phosphatidylglycerophosphatase C [EC:3.1.3.27]
D CH54_542 cls; cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
C 00565 Ether lipid metabolism [PATH:ykr00565]
D CH54_2788 phospholipase A1 family protein K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00600 Sphingolipid metabolism [PATH:ykr00600]
D CH54_825 glycosyl hydrolases 2 family protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D CH54_1179 glycosyl hydrolase family 20, catalytic domain protein K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
C 00590 Arachidonic acid metabolism
D CH54_2788 phospholipase A1 family protein K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00591 Linoleic acid metabolism
D CH54_2788 phospholipase A1 family protein K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00592 alpha-Linolenic acid metabolism [PATH:ykr00592]
D CH54_2788 phospholipase A1 family protein K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D CH54_2851 fadA; acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D CH54_3858 fadI; acetyl-CoA C-acyltransferase FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01040 Biosynthesis of unsaturated fatty acids [PATH:ykr01040]
D CH54_3754 GDSL-like Lipase/Acylhydrolase family protein K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D CH54_3703 tesB; acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D CH54_536 thioesterase superfamily protein K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:ykr00230]
D CH54_3122 nudix-type nucleoside diphosphatase, YffH/AdpP family protein K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D CH54_2313 NUDIX domain protein K08312 nudE; ADP compounds hydrolase [EC:3.6.1.-]
D CH54_3716 metalloenzyme superfamily protein K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D CH54_1866 deoB; phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D CH54_1171 pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D CH54_659 prs; ribose-phosphate diphosphokinase family protein K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D CH54_3899 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D CH54_2895 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D CH54_1355 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D CH54_170 purT; phosphoribosylglycinamide formyltransferase 2 K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21]
D CH54_1484 purL; phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D CH54_1354 purM; phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D CH54_3757 purK; phosphoribosylaminoimidazole carboxylase, ATPase subunit K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D CH54_3758 purE; phosphoribosylaminoimidazole carboxylase, catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D CH54_1343 purC; phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D CH54_114 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D CH54_2896 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D CH54_3726 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D CH54_3745 hypothetical protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D CH54_1683 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D CH54_1187 HAD hydrolase, IA, variant 1 family protein K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D CH54_2315 HAD hydrolase, IA, variant 3 family protein K20881 yrfG; GMP/IMP 5'-nucleotidase [EC:3.1.3.-]
D CH54_3742 pfkB carbohydrate kinase family protein K00892 gsk; inosine kinase [EC:2.7.1.73]
D CH54_914 xapA; xanthosine phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D CH54_1865 deoD; purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D CH54_3637 hypothetical protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D CH54_1601 multi-copper polyphenol oxidoreductase laccase family protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D CH54_1739 hpt; hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D CH54_1441 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D CH54_1453 nucleoside diphosphate kinase family protein K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D CH54_1853 hypothetical protein K01529 yjjX; inosine/xanthosine triphosphatase [EC:3.6.1.73]
D CH54_3367 rdgB; non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D CH54_3613 phosphoribosyl transferase domain protein K00769 gpt; xanthine phosphoribosyltransferase [EC:2.4.2.22]
D CH54_1440 guaA; GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D CH54_1765 guaC; guanosine monophosphate reductase K00364 guaC; GMP reductase [EC:1.7.1.7]
D CH54_2582 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D CH54_1579 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D CH54_3963 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D CH54_3962 ribonucleotide reductase, small chain family protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D CH54_1580 ribonucleotide reductase, small chain family protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D CH54_1943 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D CH54_1713 dgt; dGTPase family protein K01129 dgt; dGTPase [EC:3.1.5.1]
D CH54_3921 HD domain protein K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89]
D CH54_2580 RelA/SpoT family protein K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D CH54_2746 ppx/GppA phosphatase family protein K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D CH54_1362 ppx/GppA phosphatase family protein K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D CH54_1710 RelA/SpoT family protein K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5]
D CH54_2773 adenylate cyclase, class-I family protein K05851 cyaA; adenylate cyclase, class 1 [EC:4.6.1.1]
D CH54_1082 CYTH domain protein K05873 cyaB; adenylate cyclase, class 2 [EC:4.6.1.1]
D CH54_1160 cAMP phosphodiesterases class-II family protein K01120 cpdP; 3',5'-cyclic-nucleotide phosphodiesterase [EC:3.1.4.17]
D CH54_2033 purA; adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D CH54_449 add; adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4]
D CH54_398 amn; AMP nucleosidase K01241 amn; AMP nucleosidase [EC:3.2.2.4]
D CH54_3510 hypothetical protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
D CH54_1143 hypothetical protein K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D CH54_2016 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D CH54_3731 adenylate kinase family protein K00939 adk; adenylate kinase [EC:2.7.4.3]
D CH54_1709 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D CH54_3124 calcineurin-like phosphoesterase family protein K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]
D CH54_1819 apaH; Diadenosine tetraphosphatase K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41]
D CH54_1692 cysC; adenylyl-sulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D CH54_1693 cysN; sulfate adenylyltransferase, large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D CH54_1694 cysD; sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D CH54_1555 ureC; urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D CH54_1556 ureB; urease, beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D CH54_1557 ureA; urease, gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
C 00240 Pyrimidine metabolism [PATH:ykr00240]
D CH54_1826 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D CH54_1827 carA; carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D CH54_3005 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D CH54_3004 pyrI; aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D CH54_68 pyrC; dihydroorotase, homodimeric type K01465 URA4; dihydroorotase [EC:3.5.2.3]
D CH54_2994 amidohydrolase family protein K01465 URA4; dihydroorotase [EC:3.5.2.3]
D CH54_4120 pyrD; dihydroorotate dehydrogenase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D CH54_2641 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D CH54_486 pyrF; orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D CH54_3522 pyrH; UMP kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D CH54_1453 nucleoside diphosphate kinase family protein K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D CH54_1709 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D CH54_2973 maf; septum formation protein Maf K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D CH54_3085 hypothetical protein K07043 upp; UTP pyrophosphatase [EC:3.6.1.-]
D CH54_1708 pyrG; CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D CH54_4094 cmk; cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D CH54_567 NUDIX domain protein K08320 nudG; (d)CTP diphosphatase [EC:3.6.1.65]
D CH54_993 udk; uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48]
D CH54_3745 hypothetical protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D CH54_1683 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D CH54_1187 HAD hydrolase, IA, variant 1 family protein K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D CH54_390 noncanonical pyrimidine nucleotidase, YjjG family K08723 yjjG; pyrimidine 5'-nucleotidase [EC:3.1.3.-]
D CH54_2835 udp; uridine phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3]
D CH54_3637 hypothetical protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D CH54_1353 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D CH54_1143 hypothetical protein K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D CH54_2016 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D CH54_3619 bacterial regulatory s, luxR family protein K16328 psuK; pseudouridine kinase [EC:2.7.1.83]
D CH54_3620 indigoidine synthase A like family protein K16329 psuG; pseudouridylate synthase [EC:4.2.1.70]
D CH54_1206 inosine-uridine preferring nucleoside hydrolase family protein K01250 rihA; pyrimidine-specific ribonucleoside hydrolase [EC:3.2.2.-]
D CH54_3510 hypothetical protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
D CH54_1002 cdd; cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D CH54_2294 amidohydrolase family protein K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D CH54_1943 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D CH54_992 dcd; deoxycytidine triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D CH54_1579 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D CH54_3963 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D CH54_3962 ribonucleotide reductase, small chain family protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D CH54_1580 ribonucleotide reductase, small chain family protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D CH54_3921 HD domain protein K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89]
D CH54_83 tmk; dTMP kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D CH54_2643 dut; dUTP diphosphatase family protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D CH54_1867 deoA; thymidine phosphorylase K00758 deoA; thymidine phosphorylase [EC:2.4.2.4]
D CH54_554 thymidine kinase family protein K00857 tdk; thymidine kinase [EC:2.7.1.21]
D CH54_3487 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D CH54_428 polysaccharide biosynthesis family protein K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:ykr00250]
D CH54_4115 aminotransferase class I and II family protein K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D CH54_1507 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D CH54_4090 L-asparaginase, type II family protein K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D CH54_573 L-asparaginase, type I family protein K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D CH54_2538 asnA; aspartate--ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D CH54_1188 asnB; asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D CH54_3572 carbon-nitrogen hydrolase family protein K13566 NIT2; omega-amidase [EC:3.5.1.3]
D CH54_3923 aminotransferase class I and II family protein K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D CH54_2066 aspA; aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1]
D CH54_912 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D CH54_2699 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D CH54_2033 purA; adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D CH54_114 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D CH54_3005 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D CH54_3004 pyrI; aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D CH54_3092 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D CH54_2982 succinate-semialdehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D CH54_3035 glutamine amidotransferases class-II family protein K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D CH54_3034 glutamate synthase, small subunit domain protein K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D CH54_2387 glu/Leu/Phe/Val dehydrogenase, dimerization domain protein K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D CH54_754 delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D CH54_2566 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CH54_1826 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D CH54_1827 carA; carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D CH54_3364 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2]
D CH54_713 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2]
D CH54_3094 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2]
D CH54_2523 glmS; glutamine-fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D CH54_3899 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:ykr00260]
D CH54_2913 aspartate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CH54_1848 aspartate kinase domain protein K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D CH54_2693 aspartate kinase domain protein K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D CH54_2356 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D CH54_1847 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D CH54_1846 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D CH54_4060 beta-eliminating lyase family protein K01620 ltaE; threonine aldolase [EC:4.1.2.48]
D CH54_1475 beta-eliminating lyase family protein K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D CH54_644 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]
D CH54_2481 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D CH54_2077 glycerate kinase family protein K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D CH54_1123 phosphoglycerate mutase 1 family protein K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D CH54_1851 histidine phosphatase super family protein K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D CH54_2659 gpmI; phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D CH54_3399 ACT domain protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D CH54_4092 serC; phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D CH54_1863 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D CH54_428 polysaccharide biosynthesis family protein K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
D CH54_2655 kbl; glycine C-acetyltransferase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D CH54_2656 tdh; L-threonine 3-dehydrogenase K00060 tdh; threonine 3-dehydrogenase [EC:1.1.1.103]
D CH54_3408 gcvP; glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D CH54_3406 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D CH54_2708 pyridine nucleotide-disulfide oxidoreductase family protein K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CH54_1754 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CH54_3407 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D CH54_3561 phospholipase D family protein K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D CH54_4034 CBS domain protein K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22]
D CH54_4033 cys/Met metabolism PLP-dependent enzyme family protein K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D CH54_4036 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D CH54_166 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D CH54_2490 pyridoxal-phosphate dependent enzyme family protein K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D CH54_2731 ilvA; threonine ammonia-lyase, biosynthetic K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D CH54_3871 aspartate racemase family protein K25316 racX; amino-acid racemase [EC:5.1.1.10]
D CH54_530 trpA; tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D CH54_529 trpB; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:ykr00270]
D CH54_2664 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D CH54_1294 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D CH54_3697 pyridoxal-phosphate dependent enzyme family protein K01738 cysK; cysteine synthase [EC:2.5.1.47]
D CH54_4033 cys/Met metabolism PLP-dependent enzyme family protein K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D CH54_3138 metC; cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D CH54_448 C-S lyase family protein K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D CH54_4034 CBS domain protein K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22]
D CH54_2909 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D CH54_2833 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D CH54_3385 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D CH54_1744 speD; S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D CH54_1743 speE; spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D CH54_1714 mtnN; MTA/SAH nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D CH54_3578 mtnK; S-methyl-5-thioribose kinase K00899 mtnK; 5-methylthioribose kinase [EC:2.7.1.100]
D CH54_1601 multi-copper polyphenol oxidoreductase laccase family protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D CH54_3577 mtnA; S-methyl-5-thioribose-1-phosphate isomerase K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23]
D CH54_3574 mtnB; methylthioribulose-1-phosphate dehydratase K08964 mtnB; methylthioribulose-1-phosphate dehydratase [EC:4.2.1.109]
D CH54_3575 mtnC; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase K09880 mtnC; enolase-phosphatase E1 [EC:3.1.3.77]
D CH54_3576 ARD/ARD' family protein K08967 mtnD; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [EC:1.13.11.53 1.13.11.54]
D CH54_2937 aminotransferase class I and II family protein K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D CH54_215 hypothetical protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14]
D CH54_3053 dcm; DNA (cytosine-5-)-methyltransferase family protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D CH54_1618 S-Ribosylhomocysteinase family protein K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D CH54_2913 aspartate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CH54_1848 aspartate kinase domain protein K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D CH54_2693 aspartate kinase domain protein K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D CH54_2356 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D CH54_2904 metA; homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D CH54_2692 metB; O-succinylhomoserine (thiol)-lyase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D CH54_129 O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D CH54_2729 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D CH54_1619 gshA; glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D CH54_3377 gshB; glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D CH54_4115 aminotransferase class I and II family protein K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D CH54_1073 rhodanese-like domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D CH54_3871 aspartate racemase family protein K25316 racX; amino-acid racemase [EC:5.1.1.10]
D CH54_761 pyridoxal phosphate-dependent enzyme, D-cysteine desulfhydrase family protein K05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15]
D CH54_2000 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D CH54_4036 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D CH54_166 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D CH54_1300 cysM; cysteine synthase B K12339 cysM; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144]
D CH54_3399 ACT domain protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D CH54_4092 serC; phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:ykr00280]
D CH54_2729 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D CH54_2708 pyridine nucleotide-disulfide oxidoreductase family protein K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CH54_1754 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CH54_2852 fadB; fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D CH54_3859 fadJ; fatty oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D CH54_2851 fadA; acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D CH54_3858 fadI; acetyl-CoA C-acyltransferase FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D CH54_2370 mmsA; methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:ykr00290]
D CH54_2490 pyridoxal-phosphate dependent enzyme family protein K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D CH54_2731 ilvA; threonine ammonia-lyase, biosynthetic K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D CH54_1798 leuC; 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D CH54_1799 leuD; 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D CH54_1797 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D CH54_392 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D CH54_2727 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D CH54_1792 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D CH54_391 ACT domain protein K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D CH54_1791 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D CH54_2728 ACT domain protein K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D CH54_2733 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D CH54_2730 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D CH54_2729 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D CH54_2483 aminotransferase class I and II family protein K00835 avtA; valine--pyruvate aminotransferase [EC:2.6.1.66]
D CH54_3923 aminotransferase class I and II family protein K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D CH54_1796 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:ykr00300]
D CH54_2913 aspartate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CH54_1848 aspartate kinase domain protein K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D CH54_2693 aspartate kinase domain protein K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D CH54_2356 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D CH54_1345 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D CH54_1828 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D CH54_3517 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D CH54_2286 astC; succinylornithine transaminase family protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D CH54_1336 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D CH54_2776 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D CH54_3476 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D CH54_1784 murE; UDP-N-acetylmuramyl-tripeptide synthetase family protein K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D CH54_1783 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family protein K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:ykr00310]
D CH54_1146 sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D CH54_2708 pyridine nucleotide-disulfide oxidoreductase family protein K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CH54_1754 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CH54_2852 fadB; fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D CH54_3859 fadJ; fatty oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D CH54_3871 aspartate racemase family protein K25316 racX; amino-acid racemase [EC:5.1.1.10]
D CH54_2982 succinate-semialdehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D CH54_4101 hypothetical protein K25986 ydcJ; 2-oxoadipate dioxygenase/decarboxylase [EC:1.13.11.93]
D CH54_281 hypothetical protein K26063 ydiJ; (R)-2-hydroxyglutarate dehydrogenase [EC:1.1.-.-]
C 00220 Arginine biosynthesis [PATH:ykr00220]
D CH54_1936 argF; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D CH54_912 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D CH54_2699 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D CH54_1555 ureC; urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D CH54_1556 ureB; urease, beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D CH54_1557 ureA; urease, gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
D CH54_1897 arcA; arginine deiminase K01478 arcA; arginine deiminase [EC:3.5.3.6]
D CH54_3364 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2]
D CH54_713 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2]
D CH54_3094 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2]
D CH54_2566 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CH54_1826 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D CH54_1827 carA; carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D CH54_2387 glu/Leu/Phe/Val dehydrogenase, dimerization domain protein K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D CH54_4115 aminotransferase class I and II family protein K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D CH54_3923 aminotransferase class I and II family protein K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D CH54_3496 argA; amino-acid N-acetyltransferase K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1]
D CH54_2698 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D CH54_2697 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D CH54_2286 astC; succinylornithine transaminase family protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D CH54_2696 argE; acetylornithine deacetylase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16]
C 00330 Arginine and proline metabolism [PATH:ykr00330]
D CH54_2294 amidohydrolase family protein K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D CH54_3386 speA; arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19]
D CH54_3373 aguA; agmatine deiminase K10536 aguA; agmatine deiminase [EC:3.5.3.12]
D CH54_3374 aguB; N-carbamoylputrescine amidase K12251 aguB; N-carbamoylputrescine amidase [EC:3.5.1.53]
D CH54_3357 beta-eliminating lyase family protein K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D CH54_1964 beta-eliminating lyase family protein K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D CH54_1743 speE; spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D CH54_1744 speD; S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D CH54_1356 acetyltransferase domain protein K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57]
D CH54_1642 acetamidase/Formamidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D CH54_680 astA; arginine N-succinyltransferase K00673 astA; arginine N-succinyltransferase [EC:2.3.1.109]
D CH54_678 astB; succinylarginine dihydrolase K01484 astB; succinylarginine dihydrolase [EC:3.5.3.23]
D CH54_681 astC; succinylornithine transaminase family protein K00840 astC; succinylornithine aminotransferase [EC:2.6.1.81]
D CH54_679 astD; succinylglutamate-semialdehyde dehydrogenase K06447 astD; succinylglutamic semialdehyde dehydrogenase [EC:1.2.1.71]
D CH54_677 astE; succinylglutamate desuccinylase K05526 astE; succinylglutamate desuccinylase [EC:3.5.1.96]
D CH54_3370 proC; pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D CH54_754 delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D CH54_3616 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D CH54_3618 proA; glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D CH54_177 pip; prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D CH54_4115 aminotransferase class I and II family protein K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism [PATH:ykr00340]
D CH54_978 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D CH54_985 hisE; phosphoribosyl-ATP diphosphatase K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31]
D CH54_983 hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D CH54_982 hisH; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D CH54_984 hisF; imidazoleglycerol phosphate synthase, cyclase subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D CH54_981 hisB; histidinol-phosphatase K01089 hisB; imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase [EC:4.2.1.19 3.1.3.15]
D CH54_424 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CH54_980 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CH54_979 hisD; histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D CH54_2432 hutH; histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
D CH54_2433 hutU; urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49]
D CH54_674 hutI; imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7]
D CH54_672 hutF; formiminoglutamate deiminase K05603 hutF; formimidoylglutamate deiminase [EC:3.5.3.13]
D CH54_675 hutG; N-formylglutamate deformylase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68]
C 00350 Tyrosine metabolism [PATH:ykr00350]
D CH54_4115 aminotransferase class I and II family protein K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D CH54_424 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CH54_980 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CH54_2937 aminotransferase class I and II family protein K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D CH54_1031 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D CH54_551 aldehyde dehydrogenase family protein K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D CH54_2982 succinate-semialdehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00360 Phenylalanine metabolism [PATH:ykr00360]
D CH54_4115 aminotransferase class I and II family protein K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D CH54_424 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CH54_980 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CH54_2937 aminotransferase class I and II family protein K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D CH54_2362 acetyltransferase domain protein K03825 aaaT; L-phenylalanine/L-methionine N-acetyltransferase [EC:2.3.1.53 2.3.1.-]
D CH54_588 ketopantoate reductase PanE/ApbA family protein K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
D CH54_1642 acetamidase/Formamidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4]
C 00380 Tryptophan metabolism [PATH:ykr00380]
D CH54_1146 sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D CH54_2708 pyridine nucleotide-disulfide oxidoreductase family protein K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CH54_1754 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CH54_2852 fadB; fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D CH54_3859 fadJ; fatty oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D CH54_1801 tnaA; tryptophanase K01667 tnaA; tryptophanase [EC:4.1.99.1]
D CH54_1642 acetamidase/Formamidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D CH54_3956 catalase family protein K03781 katE; catalase [EC:1.11.1.6]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:ykr00400]
D CH54_277 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D CH54_1607 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D CH54_1124 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D CH54_2305 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D CH54_2965 aroQ; 3-dehydroquinate dehydratase, type II K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D CH54_2214 aroE; shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D CH54_3636 cytidylate kinase-like family protein K00891 aroK; shikimate kinase [EC:2.7.1.71]
D CH54_2306 ATPase associated with various cellular activities family protein K00891 aroK; shikimate kinase [EC:2.7.1.71]
D CH54_4093 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D CH54_3863 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D CH54_525 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D CH54_526 glutamine amidotransferase of anthranilate synthase/aminodeoxychorismate synthase family protein K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D CH54_527 trpD; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D CH54_528 indole-3-glycerol phosphate synthase family protein K13498 trpCF; indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase [EC:4.1.1.48 5.3.1.24]
D CH54_530 trpA; tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D CH54_529 trpB; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D CH54_1606 tyrA; chorismate mutase K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12]
D CH54_1605 chorismate mutase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D CH54_1657 bacterial extracellular solute-binding s, 3 family protein K01713 pheC; cyclohexadienyl dehydratase [EC:4.2.1.51 4.2.1.91]
D CH54_4115 aminotransferase class I and II family protein K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D CH54_424 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CH54_980 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CH54_2937 aminotransferase class I and II family protein K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:ykr00410]
D CH54_1734 panD; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D CH54_3092 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D CH54_1733 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D CH54_2852 fadB; fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D CH54_3859 fadJ; fatty oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D CH54_2370 mmsA; methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
C 00430 Taurine and hypotaurine metabolism [PATH:ykr00430]
D CH54_3092 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D CH54_3650 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D CH54_2273 taurine catabolism dioxygenase TauD, TfdA family protein K03119 tauD; taurine dioxygenase [EC:1.14.11.17]
D CH54_3913 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D CH54_3914 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism [PATH:ykr00440]
D CH54_1948 bacterial phosphonate metabolism family protein K06164 phnI; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI [EC:2.7.8.37]
D CH54_1946 phnG; phosphonate C-P lyase system protein PhnG K06166 phnG; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG [EC:2.7.8.37]
D CH54_1947 phnH; phosphonate C-P lyase system protein PhnH K06165 phnH; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH [EC:2.7.8.37]
D CH54_1951 phnL; phosphonate C-P lyase system protein PhnL K05780 phnL; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [EC:2.7.8.37]
D CH54_1952 phnM; phosphonate metabolism protein PhnM K06162 phnM; alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase [EC:3.6.1.63]
D CH54_1949 phosphonate metabolism PhnJ family protein K06163 phnJ; alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase [EC:4.7.1.1]
D CH54_1954 phnP; phosphonate metabolism protein PhnP K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]
C 00450 Selenocompound metabolism [PATH:ykr00450]
D CH54_2692 metB; O-succinylhomoserine (thiol)-lyase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D CH54_3138 metC; cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D CH54_448 C-S lyase family protein K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D CH54_2909 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D CH54_2833 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D CH54_4033 cys/Met metabolism PLP-dependent enzyme family protein K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D CH54_287 sufS; cysteine desulfurase, SufS family protein K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D CH54_4078 trxB; thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D CH54_1693 cysN; sulfate adenylyltransferase, large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D CH54_1694 cysD; sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D CH54_570 selD; selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D CH54_2995 beta-eliminating lyase family protein K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D CH54_2455 selA; L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D CH54_995 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:ykr00460]
D CH54_3650 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D CH54_4090 L-asparaginase, type II family protein K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D CH54_573 L-asparaginase, type I family protein K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D CH54_2538 asnA; aspartate--ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D CH54_1475 beta-eliminating lyase family protein K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:ykr00470]
D CH54_587 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D CH54_2936 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D CH54_1777 D-alanine--D-alanine ligase family protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D CH54_3593 D-alanine--D-alanine ligase family protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D CH54_3871 aspartate racemase family protein K25316 racX; amino-acid racemase [EC:5.1.1.10]
D CH54_3364 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2]
D CH54_713 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2]
D CH54_3094 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2]
D CH54_2716 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D CH54_1781 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D CH54_350 hypothetical protein K19802 ycjG; L-Ala-D/L-Glu epimerase / N-acetyl-D-glutamate racemase [EC:5.1.1.20 5.1.1.25]
D CH54_761 pyridoxal phosphate-dependent enzyme, D-cysteine desulfhydrase family protein K05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15]
D CH54_2776 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D CH54_3476 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D CH54_588 ketopantoate reductase PanE/ApbA family protein K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
C 00480 Glutathione metabolism [PATH:ykr00480]
D CH54_3650 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D CH54_1156 lamB/YcsF family protein K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9]
D CH54_1158 allophanate hydrolase subunit 1 family protein K23123 pxpB; 5-oxoprolinase (ATP-hydrolysing) subunit B [EC:3.5.2.9]
D CH54_1157 hypothetical protein K23124 pxpC; 5-oxoprolinase (ATP-hydrolysing) subunit C [EC:3.5.2.9]
D CH54_1619 gshA; glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D CH54_3377 gshB; glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D CH54_1931 hypothetical protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D CH54_1459 peptidase family protein K07751 pepB; PepB aminopeptidase [EC:3.4.11.23]
D CH54_4119 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D CH54_3598 pepD; Xaa-His dipeptidase family protein K01270 pepD; dipeptidase D [EC:3.4.13.-]
D CH54_324 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D CH54_2944 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D CH54_4024 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D CH54_2392 gor; glutathione-disulfide reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7]
D CH54_119 icd; isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D CH54_986 gnd; 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D CH54_612 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D CH54_262 glutathione peroxidase family protein K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
D CH54_2709 hypothetical protein K24136 pgdX; glutathione-dependent peroxiredoxin [EC:1.11.1.27]
D CH54_3357 beta-eliminating lyase family protein K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D CH54_1964 beta-eliminating lyase family protein K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D CH54_1743 speE; spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation [PATH:ykr00511]
D CH54_825 glycosyl hydrolases 2 family protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D CH54_1179 glycosyl hydrolase family 20, catalytic domain protein K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
C 00540 Lipopolysaccharide biosynthesis [PATH:ykr00540]
D CH54_593 lpxA; acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D CH54_3532 lpxA; acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D CH54_1773 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D CH54_3530 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D CH54_3759 lpxH; UDP-2,3-diacylglucosamine diphosphatase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D CH54_3533 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D CH54_4100 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D CH54_3016 sugar isomerase, KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D CH54_651 kdsA; 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D CH54_3015 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family protein K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D CH54_4104 kdsB; 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D CH54_2651 glycosyl transferases group 1 family protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D CH54_59 lpxL; lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase family protein K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D CH54_615 msbB; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243]
D CH54_851 aspartyl/Asparaginyl beta-hydroxylase family protein K12979 lpxO; beta-hydroxylase [EC:1.14.11.-]
D CH54_309 hypothetical protein K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D CH54_2427 hypothetical protein K12975 eptB; KDO II ethanolaminephosphotransferase [EC:2.7.8.42]
D CH54_151 antimicrobial peptide resistance and lipid A acylation PagP family protein K12973 pagP; lipid IVA palmitoyltransferase [EC:2.3.1.251]
D CH54_268 dolichyl-phosphate-mannose-mannosyltransferase family protein K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43]
D CH54_2951 lpxL; lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase family protein K12974 lpxP; KDO2-lipid IV(A) palmitoleoyltransferase [EC:2.3.1.242]
D CH54_3580 gmhA; phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D CH54_3114 rfaE1; bifunctional protein RfaE, domain I K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D CH54_3554 gmhB; D,D-heptose 1,7-bisphosphate phosphatase family protein K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D CH54_2654 rfaD; ADP-glyceromanno-heptose 6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D CH54_2652 waaC; lipopolysaccharide heptosyltransferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D CH54_2653 waaF; lipopolysaccharide heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D CH54_1900 rfaQ; putative lipopolysaccharide heptosyltransferase III K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
D CH54_121 O-Antigen ligase family protein K02847 waaL; O-antigen ligase [EC:2.4.99.26]
C 00542 O-Antigen repeat unit biosynthesis [PATH:ykr00542]
D CH54_2750 wecA; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:ykr00541]
D CH54_987 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CH54_988 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CH54_1118 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CH54_3741 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CH54_556 nucleotide sugar dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D CH54_2755 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D CH54_2754 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D CH54_2757 wecE; TDP-4-keto-6-deoxy-D-glucose transaminase family protein K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59]
D CH54_2756 wecD; TDP-D-fucosamine acetyltransferase K16704 rffC; dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase [EC:2.3.1.210]
D CH54_441 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D CH54_2524 glmU; UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D CH54_2752 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D CH54_2753 nucleotide sugar dehydrogenase family protein K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
D CH54_3603 3-beta hydroxysteroid dehydrogenase/isomerase family protein K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-]
D CH54_3602 rmlD substrate binding domain protein K19068 wbjC; UDP-2-acetamido-2,6-beta-L-arabino-hexul-4-ose reductase [EC:1.1.1.367]
D CH54_3601 UDP-N-acetylglucosamine 2-epimerase K24258 wbjD; UDP-N-acetyl-L-fucosamine synthase [EC:5.1.3.28]
D CH54_3739 3-beta hydroxysteroid dehydrogenase/isomerase family protein K24300 wbpM; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135]
C 00550 Peptidoglycan biosynthesis [PATH:ykr00550]
D CH54_3024 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D CH54_2862 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D CH54_1778 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D CH54_1781 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D CH54_1784 murE; UDP-N-acetylmuramyl-tripeptide synthetase family protein K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D CH54_1777 D-alanine--D-alanine ligase family protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D CH54_3593 D-alanine--D-alanine ligase family protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D CH54_1783 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family protein K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D CH54_3525 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D CH54_3109 uppP; undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D CH54_4040 PAP2 superfamily protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D CH54_1782 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D CH54_1779 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D CH54_3039 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D CH54_2312 penicillin-binding, 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D CH54_1724 mrcB; penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D CH54_1455 pbpC; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D CH54_1214 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D CH54_154 penicillin binding transpeptidase domain protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D CH54_1785 penicillin binding transpeptidase domain protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D CH54_4035 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D CH54_1217 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D CH54_1990 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
C 00552 Teichoic acid biosynthesis [PATH:ykr00552]
D CH54_3109 uppP; undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D CH54_4040 PAP2 superfamily protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D CH54_2750 wecA; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D CH54_3610 Poly(glycerophosphate) glycerophosphotransferase family protein K21591 tarF; teichoic acid glycerol-phosphate transferase [EC:2.7.8.45]
D CH54_3739 3-beta hydroxysteroid dehydrogenase/isomerase family protein K24300 wbpM; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:ykr00543]
D CH54_2750 wecA; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D CH54_2761 glycosyltransferase, WecB/TagA/CpsF family protein K02852 wecG; UDP-N-acetyl-D-mannosaminouronate:lipid I N-acetyl-D-mannosaminouronosyltransferase [EC:2.4.1.180]
D CH54_2759 4-alpha-L-fucosyltransferase glycosyl transferase group 56 family protein K12582 wecF; dTDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase [EC:2.4.1.325]
D CH54_694 pgaC; poly-beta-1,6 N-acetyl-D-glucosamine synthase K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-]
D CH54_693 pgaD; poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD K11937 pgaD; biofilm PGA synthesis protein PgaD
D CH54_2664 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D CH54_1393 acyltransferase family protein K16568 exoZ; exopolysaccharide production protein ExoZ
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:ykr00730]
D CH54_2887 thiC; phosphomethylpyrimidine synthase K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D CH54_1385 thiD; hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D CH54_2885 thiF family protein K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
D CH54_1467 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CH54_3671 thiI; tRNA sulfurtransferase ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D CH54_2882 thiH; thiazole biosynthesis protein ThiH K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19]
D CH54_3668 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D CH54_2883 thiazole biosynthesis ThiG family protein K03149 thiG; thiazole synthase [EC:2.8.1.10]
D CH54_2886 thiE; thiamine-phosphate diphosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D CH54_3666 thiL; thiamine-phosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D CH54_2049 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D CH54_388 alkaline phosphatase family protein K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D CH54_97 thiK; thiamine kinase K07251 thiK; thiamine kinase [EC:2.7.1.89]
D CH54_3731 adenylate kinase family protein K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:ykr00740]
D CH54_492 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D CH54_3663 ribD; riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D CH54_2779 HAD hydrolase, IA, variant 1 family protein K20862 yigB; FMN hydrolase / 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.102 3.1.3.104]
D CH54_3117 ribB; 3,4-dihydroxy-2-butanone-4-phosphate synthase K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12]
D CH54_3664 ribH; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D CH54_296 ribE; riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D CH54_1833 ribF; riboflavin biosynthesis protein RibF K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D CH54_831 histidine phosphatase super family protein K01093 appA; 4-phytase / acid phosphatase [EC:3.1.3.26 3.1.3.2]
D CH54_2850 oxidoreductase NAD-binding domain protein K05368 fre; NAD(P)H-flavin reductase [EC:1.5.1.41]
D CH54_3122 nudix-type nucleoside diphosphatase, YffH/AdpP family protein K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D CH54_117 NUDIX domain protein K12152 nudJ; phosphatase NudJ [EC:3.6.1.-]
D CH54_3900 polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylase family protein K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism [PATH:ykr00750]
D CH54_321 pdxH; pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D CH54_323 pyridoxal kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D CH54_3390 epd; erythrose-4-phosphate dehydrogenase K03472 epd; D-erythrose 4-phosphate dehydrogenase [EC:1.2.1.72]
D CH54_3888 hypothetical protein K03473 pdxB; erythronate-4-phosphate dehydrogenase [EC:1.1.1.290]
D CH54_4092 serC; phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D CH54_1816 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase PdxA K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
D CH54_1496 pdxJ; pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2]
D CH54_1846 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:ykr00760]
D CH54_1507 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D CH54_1127 nadA; quinolinate synthetase complex, A subunit K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D CH54_1761 nadC; nicotinate-nucleotide diphosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D CH54_4118 pncB; nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D CH54_914 xapA; xanthosine phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D CH54_1865 deoD; purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D CH54_1860 nicotinamide-nucleotide adenylyltransferase K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D CH54_3745 hypothetical protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D CH54_1683 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D CH54_1187 HAD hydrolase, IA, variant 1 family protein K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D CH54_1211 nadD; nicotinate (nicotinamide) nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D CH54_1709 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D CH54_2889 NADH pyrophosphatase-like rudimentary NUDIX domain protein K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D CH54_1480 nadE; NAD+ synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D CH54_1630 amidohydrolase, PncC family domain protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D CH54_574 isochorismatase family protein K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-]
D CH54_108 sir2 family protein K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D CH54_1513 ATP-NAD kinase family protein K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D CH54_2710 pyridine nucleotide-disulfide oxidoreductase family protein K00322 sthA; NAD(P) transhydrogenase [EC:1.6.1.1]
D CH54_377 pntA; NAD(P)(+) transhydrogenase (AB-specific), alpha subunit K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D CH54_378 NAD(P) transhydrogenase beta subunit K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
D CH54_2982 succinate-semialdehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:ykr00770]
D CH54_392 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D CH54_2727 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D CH54_1792 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D CH54_391 ACT domain protein K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D CH54_1791 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D CH54_2728 ACT domain protein K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D CH54_2733 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D CH54_2730 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D CH54_1732 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D CH54_3673 2-dehydropantoate 2-reductase family protein K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D CH54_1733 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D CH54_2864 coaA; pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33]
D CH54_2644 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D CH54_1709 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D CH54_2649 coaD; pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D CH54_1766 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D CH54_1495 acpS; holo-[acyl-carrier-protein] synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D CH54_3652 hypothetical protein K08682 acpH; acyl carrier protein phosphodiesterase [EC:3.1.4.14]
D CH54_2729 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D CH54_1734 panD; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
C 00780 Biotin metabolism [PATH:ykr00780]
D CH54_1105 bioC; malonyl-acyl carrier protein O-methyltransferase BioC K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197]
D CH54_3869 hypothetical protein K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D CH54_7 fabF; beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D CH54_80 fabF; beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D CH54_1661 hypothetical protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D CH54_387 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CH54_78 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CH54_1658 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CH54_3531 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D CH54_2331 bioH; pimelyl-[acyl-carrier protein] methyl ester esterase K02170 bioH; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85]
D CH54_1106 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D CH54_1108 bioA; adenosylmethionine-8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D CH54_433 bioD; dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D CH54_1104 bioD; dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D CH54_1107 bioB; biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6]
D CH54_2863 biotin operon repressor K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D CH54_3478 molybdopterin oxidoreductase family protein K08351 bisC; biotin/methionine sulfoxide reductase [EC:1.-.-.-]
C 00785 Lipoic acid metabolism [PATH:ykr00785]
D CH54_1219 lipB; lipoyl(octanoyl) transferase K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D CH54_1220 lipA; lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D CH54_272 lipoyltransferase and lipoate-ligase family protein K03800 lplA; lipoate---protein ligase [EC:6.3.1.20]
D CH54_2708 pyridine nucleotide-disulfide oxidoreductase family protein K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CH54_1754 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CH54_1756 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D CH54_1755 aceF; dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D CH54_1147 sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D CH54_1146 sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D CH54_3408 gcvP; glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D CH54_3406 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D CH54_3407 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:ykr00790]
D CH54_1028 folE; GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D CH54_388 alkaline phosphatase family protein K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D CH54_625 NUDIX domain protein K08310 nudB; dihydroneopterin triphosphate diphosphatase [EC:3.6.1.67]
D CH54_3108 folB; dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D CH54_1731 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D CH54_1985 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D CH54_1822 dihydrofolate reductase family protein K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D CH54_3895 folC; bifunctional FolC family protein K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D CH54_492 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D CH54_2287 glutamine amidotransferase of anthranilate synthase/aminodeoxychorismate synthase family protein K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85]
D CH54_168 pabB; aminodeoxychorismate synthase, component I K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85]
D CH54_81 pabC; aminodeoxychorismate lyase K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D CH54_1700 queD; queuosine biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D CH54_1701 putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D CH54_3694 queC; queuosine biosynthesis protein QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D CH54_3511 queF; queuine synthase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D CH54_2590 metallo-beta-lactamase superfamily protein K06897 K06897; 7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase [EC:2.5.1.105]
D CH54_1099 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D CH54_1098 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D CH54_1096 moaE family protein K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D CH54_1843 molybdenum cofactor synthesis domain protein K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D CH54_1040 molybdenum cofactor synthesis domain protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D CH54_2556 mobA; molybdenum cofactor guanylyltransferase K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:ykr00670]
D CH54_1822 dihydrofolate reductase family protein K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D CH54_462 formate--tetrahydrofolate ligase family protein K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D CH54_3763 tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain protein K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D CH54_1475 beta-eliminating lyase family protein K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D CH54_1355 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D CH54_2896 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D CH54_2220 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D CH54_3406 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D CH54_2909 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D CH54_3487 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D CH54_561 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D CH54_2694 metF; methylenetetrahydrofolate reductase [NAD(P)H] K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D CH54_3400 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:ykr00860]
D CH54_1284 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CH54_656 hemA; glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D CH54_1720 hemL; glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D CH54_2847 delta-aminolevulinic acid dehydratase family protein K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D CH54_2772 hemC; hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D CH54_2771 uroporphyrinogen-III synthase HemD family protein K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D CH54_2890 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D CH54_1315 coproporphyrinogen III oxidase family protein K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3]
D CH54_2563 hemN; oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D CH54_2857 flavodoxin domain protein K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3]
D CH54_3732 hemH; ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D CH54_2770 hemX family protein K02496 hemX; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D CH54_1695 cobA; uroporphyrinogen-III C-methyltransferase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
D CH54_2299 cobA; uroporphyrinogen-III C-methyltransferase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
D CH54_961 cobA; uroporphyrinogen-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D CH54_3676 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D CH54_927 cbiX family protein K02190 cbiK; sirohydrochlorin cobaltochelatase [EC:4.99.1.3]
D CH54_926 cobI; precorrin-2 C(20)-methyltransferase K03394 cobI-cbiL; precorrin-2/cobalt-factor-2 C20-methyltransferase [EC:2.1.1.130 2.1.1.151]
D CH54_929 cobJ; precorrin-3B C17-methyltransferase K05934 cobJ; precorrin-3B C17-methyltransferase / cobalt-factor III methyltransferase [EC:2.1.1.131 2.1.1.272]
D CH54_931 cobM; precorrin-4 C11-methyltransferase K05936 cobM; precorrin-4/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271]
D CH54_930 cobalamin synthesis G family protein K02189 cbiG; cobalt-precorrin 5A hydrolase [EC:3.7.1.12]
D CH54_928 cobK; precorrin-6x reductase K05895 cobK-cbiJ; precorrin-6A/cobalt-precorrin-6A reductase [EC:1.3.1.54 1.3.1.106]
D CH54_934 cbiD; cobalamin biosynthesis protein CbiD K02188 cbiD; cobalt-precorrin-5B (C1)-methyltransferase [EC:2.1.1.195]
D CH54_932 cbiT; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit K02191 cbiT; cobalt-precorrin-6B (C15)-methyltransferase [EC:2.1.1.196]
D CH54_933 cbiE; precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit K03399 cbiE; cobalt-precorrin-7 (C5)-methyltransferase [EC:2.1.1.289]
D CH54_935 precorrin-8X methylmutase family protein K06042 cobH-cbiC; precorrin-8X/cobalt-precorrin-8 methylmutase [EC:5.4.99.61 5.4.99.60]
D CH54_937 cobB; cobyrinic acid a,c-diamide synthase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11]
D CH54_501 cobO; cob(I)yrinic acid a,c-diamide adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D CH54_921 cobQ; cobyric acid synthase CobQ K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10]
D CH54_936 cobD; cobalamin biosynthesis protein CobD K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
D CH54_920 cobinamide kinase / cobinamide phosphate guanyltransferase family protein K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62]
D CH54_919 cobS; cobalamin 5'-phosphate synthase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26]
D CH54_917 cobT; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21]
D CH54_918 cobC; alpha-ribazole phosphatase K02226 cobC; alpha-ribazole phosphatase [EC:3.1.3.73]
D CH54_963 hypothetical protein K16651 pduX; L-threonine kinase [EC:2.7.1.177]
D CH54_962 threonine-phosphate decarboxylase K04720 cobD; threonine-phosphate decarboxylase [EC:4.1.1.81]
D CH54_2255 bfr; bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:ykr00130]
D CH54_2924 chorismate lyase family protein K03181 ubiC; chorismate lyase [EC:4.1.3.40]
D CH54_2925 ubiA; 4-hydroxybenzoate polyprenyl transferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D CH54_2849 decarboxylase, UbiD family protein K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D CH54_3900 polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylase family protein K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D CH54_3405 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family protein K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240]
D CH54_3964 ubiG; 3-demethylubiquinone-9 3-O-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
D CH54_3404 ubiH; 2-polyprenyl-6-methoxyphenol 4-hydroxylase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
D CH54_2840 ubiquinone/menaquinone biosynthesis methyltransferase family protein K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D CH54_1195 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family protein K03184 ubiF; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60]
D CH54_3950 isochorismate synthase family protein K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
D CH54_3171 isochorismate synthase family protein K02361 entC; isochorismate synthase [EC:5.4.4.2]
D CH54_3951 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9]
D CH54_3952 menH; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase K08680 menH; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [EC:4.2.99.20]
D CH54_3954 menC; o-succinylbenzoate synthase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113]
D CH54_3955 menE; O-succinylbenzoate-CoA ligase K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26]
D CH54_3953 menB; naphthoate synthase K01661 menB; naphthoate synthase [EC:4.1.3.36]
D CH54_282 hypothetical protein K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28]
D CH54_2684 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D CH54_749 wrbA; quinone oxidoreductase, type IV K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D CH54_130 3-beta hydroxysteroid dehydrogenase/isomerase family protein K19267 qorB; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:ykr00900]
D CH54_3668 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D CH54_3524 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D CH54_1686 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D CH54_658 ispE; 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D CH54_1685 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D CH54_1449 ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D CH54_1829 ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D CH54_3900 polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylase family protein K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D CH54_3669 polyprenyl synthetase family protein K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D CH54_1997 polyprenyl synthetase family protein K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D CH54_3525 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation [PATH:ykr00907]
D CH54_2852 fadB; fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D CH54_3859 fadJ; fatty oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D CH54_2851 fadA; acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D CH54_3858 fadI; acetyl-CoA C-acyltransferase FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D CH54_3389 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:ykr00523]
D CH54_2755 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D CH54_2754 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides [PATH:ykr01053]
D CH54_3950 isochorismate synthase family protein K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
D CH54_3171 isochorismate synthase family protein K02361 entC; isochorismate synthase [EC:5.4.4.2]
D CH54_3173 isochorismatase family protein K01252 entB; bifunctional isochorismate lyase / aryl carrier protein [EC:3.3.2.1 6.3.2.14]
D CH54_3174 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase K00216 entA; 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase [EC:1.3.1.28]
D CH54_853 4'-phosphopantetheinyl transferase superfamily protein K02362 entD; enterobactin synthetase component D [EC:6.3.2.14 2.7.8.-]
D CH54_891 4'-phosphopantetheinyl transferase superfamily protein K02362 entD; enterobactin synthetase component D [EC:6.3.2.14 2.7.8.-]
D CH54_3172 (2,3-dihydroxybenzoyl)adenylate synthase K02363 entE; 2,3-dihydroxybenzoate---[aryl-carrier protein] ligase [EC:6.3.2.14 6.2.1.71]
D CH54_882 salicylate synthase K04781 mbtI; salicylate synthetase [EC:5.4.4.2 4.2.99.21]
D CH54_888 amino acid adenylation domain protein K12240 pchF; L-cysteine---[L-cysteinyl-carrier protein] ligase PchF [EC:6.2.1.69]
D CH54_886 thiazolinyl imide reductase family protein K12241 pchG; pyochelin biosynthesis protein PchG
C 01055 Biosynthesis of vancomycin group antibiotics
D CH54_2754 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
D CH54_711 penicillin amidase family protein K01434 pac; penicillin G amidase [EC:3.5.1.11]
C 00332 Carbapenem biosynthesis [PATH:ykr00332]
D CH54_3616 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D CH54_3618 proA; glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:ykr00261]
D CH54_3163 mbtH-like family protein K05375 mbtH; MbtH protein
D CH54_1693 cysN; sulfate adenylyltransferase, large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D CH54_1694 cysD; sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D CH54_2913 aspartate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CH54_1848 aspartate kinase domain protein K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D CH54_2693 aspartate kinase domain protein K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D CH54_2356 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D CH54_1345 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D CH54_1828 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D CH54_2865 acetyltransferase domain protein K19113 ttr; acetyltransferase [EC:2.3.1.-]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:ykr00521]
D CH54_1272 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D CH54_1171 pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D CH54_1470 inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D CH54_2365 hypothetical protein K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D CH54_2755 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D CH54_2754 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D CH54_1272 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:ykr00525]
D CH54_2755 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D CH54_2754 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:ykr00401]
D CH54_1606 tyrA; chorismate mutase K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12]
D CH54_4115 aminotransferase class I and II family protein K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D CH54_424 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CH54_980 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CH54_2937 aminotransferase class I and II family protein K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D CH54_525 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D CH54_526 glutamine amidotransferase of anthranilate synthase/aminodeoxychorismate synthase family protein K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D CH54_77 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D CH54_387 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CH54_78 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CH54_1658 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D CH54_79 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
D CH54_1659 phosphopantetheine attachment site family protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:ykr00999]
D CH54_3385 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D CH54_2214 aroE; shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:ykr00362]
D CH54_2851 fadA; acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D CH54_3858 fadI; acetyl-CoA C-acyltransferase FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D CH54_2398 dmpI; 4-oxalocrotonate tautomerase enzyme family protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D CH54_3859 fadJ; fatty oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D CH54_2852 fadB; fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
C 00627 Aminobenzoate degradation [PATH:ykr00627]
D CH54_1642 acetamidase/Formamidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D CH54_25 acylphosphatase family protein K01512 acyP; acylphosphatase [EC:3.6.1.7]
D CH54_3900 polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylase family protein K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00364 Fluorobenzoate degradation [PATH:ykr00364]
D CH54_2834 chlorophyllase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00625 Chloroalkane and chloroalkene degradation [PATH:ykr00625]
D CH54_1031 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D CH54_551 aldehyde dehydrogenase family protein K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:ykr00361]
D CH54_2834 chlorophyllase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00623 Toluene degradation [PATH:ykr00623]
D CH54_2834 chlorophyllase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00622 Xylene degradation
D CH54_2398 dmpI; 4-oxalocrotonate tautomerase enzyme family protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00633 Nitrotoluene degradation [PATH:ykr00633]
D CH54_307 flavin oxidoreductase / NADH oxidase family protein K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
D CH54_3222 nickel-dependent hydrogenase family protein K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6]
D CH54_3219 hydrogenase family protein K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]
C 00642 Ethylbenzene degradation
D CH54_2851 fadA; acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D CH54_3858 fadI; acetyl-CoA C-acyltransferase FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 00643 Styrene degradation [PATH:ykr00643]
D CH54_1642 acetamidase/Formamidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4]
C 00791 Atrazine degradation
D CH54_1555 ureC; urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D CH54_1556 ureB; urease, beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D CH54_1557 ureA; urease, gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
C 00930 Caprolactam degradation [PATH:ykr00930]
D CH54_2852 fadB; fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D CH54_3859 fadJ; fatty oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
D CH54_2398 dmpI; 4-oxalocrotonate tautomerase enzyme family protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00626 Naphthalene degradation [PATH:ykr00626]
D CH54_1031 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D CH54_551 aldehyde dehydrogenase family protein K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:ykr03020]
D CH54_2880 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D CH54_2881 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D CH54_2228 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D CH54_2581 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:ykr03010]
D CH54_4095 rpsA; ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D CH54_3520 rpsB; ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D CH54_2247 rpsC; ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D CH54_2229 rpsD; ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D CH54_2236 rpsE; ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D CH54_2025 rpsF; ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D CH54_2259 rpsG; ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D CH54_2239 ribosomal S8 family protein K02994 RP-S8; small subunit ribosomal protein S8
D CH54_3030 ribosomal S9/S16 family protein K02996 RP-S9; small subunit ribosomal protein S9
D CH54_2254 rpsJ; ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D CH54_2230 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D CH54_2260 rpsL; ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D CH54_2231 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D CH54_2240 ribosomal S14p/S29e family protein K02954 RP-S14; small subunit ribosomal protein S14
D CH54_1975 rpsO; ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D CH54_1614 rpsP; ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D CH54_2244 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D CH54_2023 rpsR; ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D CH54_2249 rpsS; ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D CH54_1834 rpsT; ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D CH54_3104 rpsU; ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D CH54_2877 rplA; ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D CH54_2250 rplB; ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D CH54_2253 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D CH54_2252 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D CH54_2241 ribosomal L5 family protein K02931 RP-L5; large subunit ribosomal protein L5
D CH54_2238 rplF; ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D CH54_2879 rplL; ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D CH54_2022 rplI; ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D CH54_2878 ribosomal L10 family protein K02864 RP-L10; large subunit ribosomal protein L10
D CH54_2876 rplK; ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D CH54_3029 rplM; ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D CH54_2243 rplN; ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D CH54_2234 rplO; ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D CH54_2246 rplP; ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D CH54_2227 rplQ; ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D CH54_2237 rplR; ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D CH54_1611 rplS; ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D CH54_255 rplT; ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D CH54_1996 rplU; ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D CH54_2248 rplV; ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D CH54_2251 ribosomal L23 family protein K02892 RP-L23; large subunit ribosomal protein L23
D CH54_2242 rplX; ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D CH54_3991 ribosomal L25p family protein K02897 RP-L25; large subunit ribosomal protein L25
D CH54_1995 rpmA; ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D CH54_2646 rpmB; ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D CH54_2245 rpmC; ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D CH54_2235 rpmD; ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D CH54_2690 rpmE; ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D CH54_3713 rpmE; ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D CH54_74 rpmF; ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D CH54_2647 rpmG; ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D CH54_2497 rpmH; ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D CH54_254 rpmI; ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D CH54_3712 rpmJ; ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D CH54_2232 rpmJ; ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D CH54_2211 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CH54_2551 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CH54_2717 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CH54_2898 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CH54_2858 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CH54_1599 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CH54_3555 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CH54_2208 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CH54_1597 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CH54_3558 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CH54_2860 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CH54_2720 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CH54_2553 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CH54_2900 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CH54_2554 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CH54_2861 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CH54_2901 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CH54_2721 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CH54_3559 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CH54_1596 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CH54_2207 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CH54_2903 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:ykr00970]
D CH54_1285 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CH54_1287 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CH54_2209 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CH54_3557 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CH54_2719 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CH54_3764 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CH54_2763 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CH54_1622 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CH54_1623 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CH54_1624 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CH54_1413 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CH54_3844 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CH54_848 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D CH54_872 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D CH54_902 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D CH54_1584 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D CH54_1595 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D CH54_2722 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D CH54_726 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D CH54_1192 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D CH54_1194 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D CH54_1191 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D CH54_1598 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D CH54_2552 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D CH54_2859 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D CH54_2899 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D CH54_3424 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CH54_2871 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CH54_2045 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CH54_2047 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CH54_727 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CH54_2046 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CH54_2764 tRNA-His K14226 tRNA-His; tRNA His
D CH54_2210 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D CH54_3556 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D CH54_2718 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D CH54_2766 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CH54_1881 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CH54_1880 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CH54_1982 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CH54_1190 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CH54_725 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CH54_1927 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CH54_1128 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CH54_1131 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CH54_1129 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CH54_1280 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CH54_1130 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CH54_742 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CH54_1981 tRNA-Met K14230 tRNA-Met; tRNA Met
D CH54_3500 tRNA-Met K14230 tRNA-Met; tRNA Met
D CH54_3499 tRNA-Met K14230 tRNA-Met; tRNA Met
D CH54_3498 tRNA-Met K14230 tRNA-Met; tRNA Met
D CH54_1189 tRNA-Met K14230 tRNA-Met; tRNA Met
D CH54_1193 tRNA-Met K14230 tRNA-Met; tRNA Met
D CH54_3101 tRNA-Met K14230 tRNA-Met; tRNA Met
D CH54_2081 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D CH54_3356 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D CH54_3987 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D CH54_2422 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D CH54_2767 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D CH54_1625 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CH54_648 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CH54_645 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CH54_27 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CH54_3975 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CH54_2902 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D CH54_2867 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D CH54_3976 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D CH54_2872 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D CH54_2723 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D CH54_563 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D CH54_2869 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D CH54_564 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D CH54_1281 tRNA-Val K14237 tRNA-Val; tRNA Val
D CH54_1282 tRNA-Val K14237 tRNA-Val; tRNA Val
D CH54_1283 tRNA-Val K14237 tRNA-Val; tRNA Val
D CH54_293 tRNA-Val K14237 tRNA-Val; tRNA Val
D CH54_294 tRNA-Val K14237 tRNA-Val; tRNA Val
D CH54_292 tRNA-Val K14237 tRNA-Val; tRNA Val
D CH54_2439 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D CH54_1284 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CH54_1182 glnS; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D CH54_1627 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D CH54_627 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D CH54_4117 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D CH54_2472 glyQ; glycine--tRNA ligase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D CH54_2471 glyS; glycine--tRNA ligase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D CH54_252 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D CH54_4084 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D CH54_2995 beta-eliminating lyase family protein K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D CH54_2455 selA; L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D CH54_3761 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D CH54_995 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D CH54_2220 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D CH54_1933 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D CH54_1208 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D CH54_1832 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D CH54_3423 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D CH54_635 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D CH54_3548 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D CH54_1448 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D CH54_256 pheS; phenylalanine--tRNA ligase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D CH54_257 pheT; phenylalanine--tRNA ligase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D CH54_322 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CH54_2300 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:ykr03060]
D CH54_2233 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D CH54_2874 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D CH54_1983 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D CH54_3659 secD; export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D CH54_3660 secF; export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D CH54_3658 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D CH54_2500 yidC; Preprotein translocase subunit YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CH54_1770 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D CH54_2662 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D CH54_1771 secretion monitor family protein K13301 secM; secretion monitor
D CH54_1615 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D CH54_2808 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D CH54_2843 tatA; twin arginine-targeting translocase, TatA/E family protein K03116 tatA; sec-independent protein translocase protein TatA
D CH54_2844 tatB; twin arginine-targeting protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB
D CH54_2845 tatC; twin arginine-targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
D CH54_1221 tatA; twin arginine-targeting translocase, TatA/E family protein K03425 tatE; sec-independent protein translocase protein TatE
D CH54_1500 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D CH54_1831 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:ykr04122]
D CH54_1467 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CH54_1073 rhodanese-like domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D CH54_2801 sulfurtransferase TusA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D CH54_2261 dsrH; sulfur relay protein TusB/DsrH K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D CH54_2262 tusC; sulfur relay protein TusC/DsrF K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D CH54_2263 dsrE/DsrF-like family protein K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D CH54_26 tusE; sulfur relay, TusE/DsrC/DsvC family protein K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D CH54_116 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D CH54_1096 moaE family protein K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D CH54_1099 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D CH54_1097 moaD; molybdopterin converting factor, subunit 1 K03636 moaD; sulfur-carrier protein
D CH54_1041 moeB; molybdopterin synthase sulfurylase MoeB K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D CH54_1098 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D CH54_1843 molybdenum cofactor synthesis domain protein K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D CH54_3671 thiI; tRNA sulfurtransferase ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D CH54_2884 thiS; thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein
D CH54_2885 thiF family protein K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
C 03050 Proteasome
C 03018 RNA degradation [PATH:ykr03018]
D CH54_3484 NUDIX domain protein K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D CH54_70 ribonuclease, Rne/Rng family domain protein K08300 rne; ribonuclease E [EC:3.1.26.12]
D CH54_2747 DEAD/DEAH box helicase family protein K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D CH54_1707 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D CH54_1974 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D CH54_1089 hypothetical protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D CH54_2031 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D CH54_1972 DEAD/DEAH box helicase family protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D CH54_2789 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D CH54_2749 rho; Transcription termination factor K03628 rho; transcription termination factor Rho
D CH54_2671 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D CH54_1838 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D CH54_2063 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CH54_2038 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein
D CH54_1361 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D CH54_1730 pcnB; poly(A) polymerase family protein K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:ykr03030]
D CH54_178 DNA polymerase III, theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D CH54_1585 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CH54_2630 exonuclease family protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CH54_3535 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D CH54_3727 dnaX; DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CH54_84 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D CH54_1210 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CH54_1876 DNA polymerase III psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D CH54_1932 DNA polymerase III chi subunit, HolC family protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D CH54_2495 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CH54_3351 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D CH54_3793 hypothetical protein K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D CH54_2935 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D CH54_2156 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D CH54_3103 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D CH54_2940 ssb; single-stranded DNA-binding family protein K03111 ssb; single-strand DNA-binding protein
D CH54_1586 RNase H family protein K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D CH54_3534 ribonuclease HII family protein K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D CH54_2560 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D CH54_1291 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D CH54_2583 NAD-dependent DNA ligase adenylation domain protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:ykr03410]
D CH54_471 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D CH54_1511 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D CH54_3361 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D CH54_2648 mutM; DNA-formamidopyrimidine glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D CH54_770 hhH-GPD superbase excision DNA repair family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D CH54_2475 tag; DNA-3-methyladenine glycosylase I family protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D CH54_566 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D CH54_4015 apurinic endonuclease family protein K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D CH54_2560 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D CH54_3421 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D CH54_1291 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D CH54_2583 NAD-dependent DNA ligase adenylation domain protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:ykr03420]
D CH54_103 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D CH54_2939 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D CH54_1102 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
D CH54_729 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D CH54_1524 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CH54_2780 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CH54_2560 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D CH54_1291 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D CH54_2583 NAD-dependent DNA ligase adenylation domain protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:ykr03430]
D CH54_1679 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D CH54_2040 mutL; DNA mismatch repair MutL family protein K03572 mutL; DNA mismatch repair protein MutL
D CH54_3483 mutH; DNA mismatch repair endonuclease MutH K03573 mutH; DNA mismatch repair protein MutH
D CH54_1524 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CH54_2780 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CH54_971 hypothetical protein K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D CH54_1442 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D CH54_3670 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D CH54_176 exonuclease family protein K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-]
D CH54_3421 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D CH54_2940 ssb; single-stranded DNA-binding family protein K03111 ssb; single-strand DNA-binding protein
D CH54_3535 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D CH54_2495 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CH54_3727 dnaX; DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CH54_1210 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CH54_84 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D CH54_1585 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CH54_2630 exonuclease family protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CH54_178 DNA polymerase III, theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D CH54_1932 DNA polymerase III chi subunit, HolC family protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D CH54_1876 DNA polymerase III psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D CH54_1291 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D CH54_2583 NAD-dependent DNA ligase adenylation domain protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D CH54_2303 dam; DNA adenine methylase family protein K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D CH54_2629 dam; DNA adenine methylase family protein K06223 dam; DNA adenine methylase [EC:2.1.1.72]
C 03440 Homologous recombination [PATH:ykr03440]
D CH54_3421 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D CH54_2940 ssb; single-stranded DNA-binding family protein K03111 ssb; single-strand DNA-binding protein
D CH54_2494 recF; DNA replication and repair RecF family protein K03629 recF; DNA replication and repair protein RecF
D CH54_1497 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D CH54_3729 recR; recombination protein RecR K06187 recR; recombination protein RecR
D CH54_1629 recA; protein RecA K03553 recA; recombination protein RecA
D CH54_2560 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D CH54_622 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D CH54_621 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D CH54_623 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D CH54_2578 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D CH54_3494 recB; exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D CH54_3492 recC; exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D CH54_3495 recD; exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D CH54_3535 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D CH54_2495 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CH54_3727 dnaX; DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CH54_1210 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CH54_84 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D CH54_1585 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CH54_2630 exonuclease family protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CH54_178 DNA polymerase III, theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D CH54_1932 DNA polymerase III chi subunit, HolC family protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D CH54_1876 DNA polymerase III psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D CH54_2689 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D CH54_2024 single-strand binding family protein K02686 priB; primosomal replication protein N
D CH54_3724 primosomal replication priB and priC family protein K04067 priC; primosomal replication protein N''
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1 [PATH:ykr03250]
D CH54_2290 cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD family protein K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:ykr02010]
D CH54_1304 sulfate ABC transporter, sulfate-binding family protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D CH54_2672 sulfate ABC transporter, sulfate-binding family protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D CH54_1303 cysT; sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D CH54_1302 cysW; sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D CH54_1301 cysA; sulfate ABC transporter, ATP-binding family protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D CH54_2277 tauA; taurine ABC transporter, periplasmic binding protein K15551 tauA; taurine transport system substrate-binding protein
D CH54_2275 binding--dependent transport system inner membrane component family protein K15552 tauC; taurine transport system permease protein
D CH54_2276 ABC transporter family protein K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7]
D CH54_3295 bacterial extracellular solute-binding s, 3 family protein K15553 ssuA; sulfonate transport system substrate-binding protein
D CH54_3297 binding--dependent transport system inner membrane component family protein K15554 ssuC; sulfonate transport system permease protein
D CH54_3296 ABC transporter family protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D CH54_1113 modA; molybdate ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D CH54_1112 modB; molybdate ABC transporter, permease protein K02018 modB; molybdate transport system permease protein
D CH54_1111 modC; molybdate ABC transporter, ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D CH54_1116 ABC transporter family protein K05776 modF; molybdate transport system ATP-binding protein
D CH54_1251 bacterial extracellular solute-binding family protein K02012 afuA; iron(III) transport system substrate-binding protein
D CH54_1331 bacterial extracellular solute-binding family protein K02012 afuA; iron(III) transport system substrate-binding protein
D CH54_869 bacterial extracellular solute-binding family protein K02012 afuA; iron(III) transport system substrate-binding protein
D CH54_1252 binding--dependent transport system inner membrane component family protein K02011 afuB; iron(III) transport system permease protein
D CH54_1330 binding--dependent transport system inner membrane component family protein K02011 afuB; iron(III) transport system permease protein
D CH54_870 binding--dependent transport system inner membrane component family protein K02011 afuB; iron(III) transport system permease protein
D CH54_1253 ABC transporter family protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D CH54_1329 ABC transporter family protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D CH54_871 ABC transporter family protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D CH54_1806 thiB; thiamin/thiamine pyrophosphate ABC transporter, thiamin/thiamine pyrophospate-binding protein K02064 thiB; thiamine transport system substrate-binding protein
D CH54_1807 thiP; thiamine/thiamine pyrophosphate ABC transporter, permease protein K02063 thiP; thiamine transport system permease protein
D CH54_1808 thiQ; thiamine ABC transporter, ATP-binding protein K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D CH54_4046 bacterial extracellular solute-binding family protein K11073 potF; putrescine transport system substrate-binding protein
D CH54_4049 binding--dependent transport system inner membrane component family protein K11074 potI; putrescine transport system permease protein
D CH54_4048 binding--dependent transport system inner membrane component family protein K11075 potH; putrescine transport system permease protein
D CH54_4047 polyamine ABC transporter, ATP-binding family protein K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D CH54_1583 substrate binding domain of ABC-type glycine betaine transport system family protein K02002 proX; glycine betaine/proline transport system substrate-binding protein
D CH54_1582 binding--dependent transport system inner membrane component family protein K02001 proW; glycine betaine/proline transport system permease protein
D CH54_1581 proV; glycine betaine/L-proline transport ATP binding subunit K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D CH54_1070 substrate binding domain of ABC-type glycine betaine transport system family protein K05845 opuC; osmoprotectant transport system substrate-binding protein
D CH54_1067 binding--dependent transport system inner membrane component family protein K05846 opuBD; osmoprotectant transport system permease protein
D CH54_1069 binding--dependent transport system inner membrane component family protein K05846 opuBD; osmoprotectant transport system permease protein
D CH54_1068 ABC transporter family protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D CH54_2919 bacterial extracellular solute-binding family protein K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D CH54_2918 binding--dependent transport system inner membrane component family protein K10109 malF; maltose/maltodextrin transport system permease protein
D CH54_2917 binding--dependent transport system inner membrane component family protein K10110 malG; maltose/maltodextrin transport system permease protein
D CH54_2920 ABC transporter family protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D CH54_1958 ABC transporter family protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D CH54_227 bacterial extracellular solute-binding family protein K10192 togB; oligogalacturonide transport system substrate-binding protein
D CH54_230 binding--dependent transport system inner membrane component family protein K10193 togM; oligogalacturonide transport system permease protein
D CH54_229 binding--dependent transport system inner membrane component family protein K10194 togN; oligogalacturonide transport system permease protein
D CH54_228 ABC transporter family protein K10195 togA; oligogalacturonide transport system ATP-binding protein
D CH54_3021 toluene tolerance, Ttg2 family protein K07323 mlaC; phospholipid transport system substrate-binding protein
D CH54_3020 mlaD; outer membrane lipid asymmetry maintenance protein MlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D CH54_1243 mce related family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D CH54_3019 ABC transport permease subunit K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D CH54_1245 ABC transport permease subunit K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D CH54_3022 STAS domain protein K07122 mlaB; phospholipid transport system transporter-binding protein
D CH54_3018 ABC transporter family protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D CH54_1244 ABC transporter family protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D CH54_2546 periplasmic binding domain protein K10439 rbsB; ribose transport system substrate-binding protein
D CH54_2545 branched-chain amino acid transport system / permease component family protein K10440 rbsC; ribose transport system permease protein
D CH54_2544 ccmA; heme ABC exporter, ATP-binding protein CcmA K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D CH54_2543 rbsD / FucU transport family protein K06726 rbsD; D-ribose pyranase [EC:5.4.99.62]
D CH54_1025 periplasmic binding domain protein K10540 mglB; methyl-galactoside transport system substrate-binding protein
D CH54_1023 branched-chain amino acid transport system / permease component family protein K10541 mglC; methyl-galactoside transport system permease protein
D CH54_1024 ABC transporter family protein K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11]
D CH54_2443 xylF; D-xylose ABC transporter, D-xylose-binding protein K10543 xylF; D-xylose transport system substrate-binding protein
D CH54_2441 branched-chain amino acid transport system / permease component family protein K10544 xylH; D-xylose transport system permease protein
D CH54_2442 ccmA; heme ABC exporter, ATP-binding protein CcmA K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10]
D CH54_670 periplasmic binding domain protein K17213 K17213; inositol transport system substrate-binding protein
D CH54_668 branched-chain amino acid transport system / permease component family protein K17214 K17214; inositol transport system permease protein
D CH54_669 ABC transporter family protein K17215 K17215; inositol transport system ATP-binding protein
D CH54_2825 bacterial extracellular solute-binding family protein K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein
D CH54_2826 binding--dependent transport system inner membrane component family protein K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein
D CH54_2827 binding--dependent transport system inner membrane component family protein K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein
D CH54_2828 ABC transporter family protein K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10]
D CH54_3645 pstS; phosphate ABC transporter, phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D CH54_2521 pstS; phosphate ABC transporter, phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D CH54_2520 pstC; phosphate ABC transporter, permease protein PstC K02037 pstC; phosphate transport system permease protein
D CH54_1360 binding--dependent transport system inner membrane component family protein K02037 pstC; phosphate transport system permease protein
D CH54_2519 pstA; phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein
D CH54_1359 pstA; phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein
D CH54_2518 pstB; phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D CH54_1358 pstB; phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D CH54_1077 phnD; phosphonate ABC transporter, periplasmic phosphonate binding protein K02044 phnD; phosphonate transport system substrate-binding protein
D CH54_1075 phnE; phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein
D CH54_1076 phnE; phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein
D CH54_1078 phnC; phosphonate ABC transporter, ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D CH54_403 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10015 hisM; histidine transport system permease protein
D CH54_3903 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10015 hisM; histidine transport system permease protein
D CH54_3902 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10016 hisQ; histidine transport system permease protein
D CH54_402 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10016 hisQ; histidine transport system permease protein
D CH54_3904 ABC transporter family protein K10017 hisP; histidine transport system ATP-binding protein [EC:7.4.2.1]
D CH54_401 lysine-arginine-ornithine-binding periplasmic family protein K10014 hisJ; histidine transport system substrate-binding protein
D CH54_3901 lysine-arginine-ornithine-binding periplasmic family protein K10014 hisJ; histidine transport system substrate-binding protein
D CH54_1052 bacterial extracellular solute-binding s, 3 family protein K10036 glnH; glutamine transport system substrate-binding protein
D CH54_1053 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10037 glnP; glutamine transport system permease protein
D CH54_1054 ABC transporter family protein K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1]
D CH54_4052 lysine-arginine-ornithine-binding periplasmic family protein K09996 artJ; arginine transport system substrate-binding protein
D CH54_4055 lysine-arginine-ornithine-binding periplasmic family protein K09997 artI; arginine transport system substrate-binding protein
D CH54_4053 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K09998 artM; arginine transport system permease protein
D CH54_4054 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K09999 artQ; arginine transport system permease protein
D CH54_4056 ABC transporter family protein K10000 artP; arginine transport system ATP-binding protein [EC:7.4.2.1]
D CH54_1202 bacterial extracellular solute-binding s, 3 family protein K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D CH54_1204 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10002 gltK; glutamate/aspartate transport system permease protein
D CH54_1203 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10003 gltJ; glutamate/aspartate transport system permease protein
D CH54_1205 ABC transporter family protein K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D CH54_760 bacterial extracellular solute-binding s, 3 family protein K02424 tcyA; L-cystine transport system substrate-binding protein
D CH54_759 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10009 tcyB; L-cystine transport system permease protein
D CH54_758 ABC transporter family protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D CH54_1643 periplasmic binding domain protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D CH54_2814 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D CH54_2815 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein
D CH54_2816 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein
D CH54_2817 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D CH54_2818 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D CH54_3551 lipo, YaeC family protein K02073 metQ; D-methionine transport system substrate-binding protein
D CH54_4028 NLPA lipofamily protein K02073 metQ; D-methionine transport system substrate-binding protein
D CH54_2503 NLPA lipofamily protein K02073 metQ; D-methionine transport system substrate-binding protein
D CH54_3552 binding--dependent transport system inner membrane component family protein K02072 metI; D-methionine transport system permease protein
D CH54_4030 binding--dependent transport system inner membrane component family protein K02072 metI; D-methionine transport system permease protein
D CH54_2505 binding--dependent transport system inner membrane component family protein K02072 metI; D-methionine transport system permease protein
D CH54_3553 metN; D-methionine ABC transporter, ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D CH54_4029 ABC transporter family protein K02071 metN; D-methionine transport system ATP-binding protein
D CH54_2504 ABC transporter family protein K02071 metN; D-methionine transport system ATP-binding protein
D CH54_1637 urea ABC transporter, substrate-binding protein K11959 urtA; urea transport system substrate-binding protein
D CH54_1638 branched-chain amino acid transport system / permease component family protein K11960 urtB; urea transport system permease protein
D CH54_1639 branched-chain amino acid transport system / permease component family protein K11961 urtC; urea transport system permease protein
D CH54_1640 ABC transporter family protein K11962 urtD; urea transport system ATP-binding protein
D CH54_1103 ABC transporter family protein K11963 urtE; urea transport system ATP-binding protein
D CH54_1641 ABC transporter family protein K11963 urtE; urea transport system ATP-binding protein
D CH54_548 bacterial extracellular solute-binding s, 5 Middle family protein K15580 oppA; oligopeptide transport system substrate-binding protein
D CH54_549 bacterial extracellular solute-binding s, 5 Middle family protein K15580 oppA; oligopeptide transport system substrate-binding protein
D CH54_351 bacterial extracellular solute-binding s, 5 Middle family protein K15580 oppA; oligopeptide transport system substrate-binding protein
D CH54_547 binding--dependent transport system inner membrane component family protein K15581 oppB; oligopeptide transport system permease protein
D CH54_546 binding--dependent transport system inner membrane component family protein K15582 oppC; oligopeptide transport system permease protein
D CH54_545 hypothetical protein K15583 oppD; oligopeptide transport system ATP-binding protein
D CH54_544 hypothetical protein K10823 oppF; oligopeptide transport system ATP-binding protein
D CH54_2418 bacterial extracellular solute-binding s, 5 Middle family protein K12368 dppA; dipeptide transport system substrate-binding protein
D CH54_2417 binding--dependent transport system inner membrane component family protein K12369 dppB; dipeptide transport system permease protein
D CH54_2416 binding--dependent transport system inner membrane component family protein K12370 dppC; dipeptide transport system permease protein
D CH54_2415 hypothetical protein K12371 dppD; dipeptide transport system ATP-binding protein
D CH54_2414 hypothetical protein K12372 dppF; dipeptide transport system ATP-binding protein
D CH54_335 bacterial extracellular solute-binding s, 5 Middle family protein K19226 sapA; cationic peptide transport system substrate-binding protein
D CH54_334 binding--dependent transport system inner membrane component family protein K19227 sapB; cationic peptide transport system permease protein
D CH54_333 binding--dependent transport system inner membrane component family protein K19228 sapC; cationic peptide transport system permease protein
D CH54_332 hypothetical protein K19229 sapD; cationic peptide transport system ATP-binding protein
D CH54_331 ABC transporter family protein K19230 sapF; cationic peptide transport system ATP-binding protein
D CH54_3999 bacterial extracellular solute-binding s, 5 Middle family protein K13893 yejA; microcin C transport system substrate-binding protein
D CH54_3998 binding--dependent transport system inner membrane component family protein K13894 yejB; microcin C transport system permease protein
D CH54_3997 binding--dependent transport system inner membrane component family protein K13895 yejE; microcin C transport system permease protein
D CH54_3996 nikE; nickel import ATP-binding protein NikE K13896 yejF; microcin C transport system ATP-binding protein
D CH54_3170 periplasmic binding family protein K23185 fepB; ferric enterobactin transport system substrate-binding protein
D CH54_3167 fecCD transport family protein K23186 fepD; iron-siderophore transport system permease protein
D CH54_3168 fecCD transport family protein K23187 fepG; iron-siderophore transport system permease protein
D CH54_3169 ABC transporter family protein K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]
D CH54_1722 periplasmic binding family protein K23227 fhuD; ferric hydroxamate transport system substrate-binding protein
D CH54_1721 fecCD transport family protein K23228 fhuB; ferric hydroxamate transport system permease protein
D CH54_1723 ABC transporter family protein K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16]
D CH54_1715 periplasmic binding family protein K06858 btuF; vitamin B12 transport system substrate-binding protein
D CH54_261 fecCD transport family protein K06073 btuC; vitamin B12 transport system permease protein
D CH54_263 ABC transporter family protein K06074 btuD; vitamin B12 transport system ATP-binding protein [EC:7.6.2.8]
D CH54_617 periplasmic solute binding family protein K09815 znuA; zinc transport system substrate-binding protein
D CH54_619 ABC 3 transport family protein K09816 znuB; zinc transport system permease protein
D CH54_618 ABC transporter family protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D CH54_241 periplasmic solute binding family protein K11604 sitA; manganese/iron transport system substrate-binding protein
D CH54_239 ABC 3 transport family protein K11605 sitC; manganese/iron transport system permease protein
D CH54_238 ABC 3 transport family protein K11606 sitD; manganese/iron transport system permease protein
D CH54_240 ABC transporter family protein K11607 sitB; manganese/iron transport system ATP-binding protein
D CH54_924 cbiN; cobalt transport family protein K02009 cbiN; cobalt/nickel transport protein
D CH54_925 cbiM; cobalamin biosynthesis protein CbiM K02007 cbiM; cobalt/nickel transport system permease protein
D CH54_923 cbiQ; cobalt ABC transporter, permease protein CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D CH54_922 cobalt ABC transporter, ATP-binding family protein K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D CH54_1906 periplasmic binding domain protein K10555 lsrB; AI-2 transport system substrate-binding protein
D CH54_1904 branched-chain amino acid transport system / permease component family protein K10556 lsrC; AI-2 transport system permease protein
D CH54_1905 branched-chain amino acid transport system / permease component family protein K10557 lsrD; AI-2 transport system permease protein
D CH54_1903 ccmA; heme ABC exporter, ATP-binding protein CcmA K10558 lsrA; AI-2 transport system ATP-binding protein
D CH54_104 liporeleasing system, transmembrane, LolC/E family protein K09808 lolC_E; lipoprotein-releasing system permease protein
D CH54_106 lolE; liporeleasing system, transmembrane protein LolE K09808 lolC_E; lipoprotein-releasing system permease protein
D CH54_105 lolD; liporeleasing system, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D CH54_3849 ccmD; heme exporter protein CcmD K02196 ccmD; heme exporter protein D
D CH54_3848 ccmC; heme exporter CcmC family protein K02195 ccmC; heme exporter protein C
D CH54_3847 ccmB; heme exporter protein CcmB K02194 ccmB; heme exporter protein B
D CH54_3846 ccmA; heme ABC exporter, ATP-binding protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D CH54_1930 lptF; LPS export ABC transporter permease LptF K07091 lptF; lipopolysaccharide export system permease protein
D CH54_1929 lptG; LPS export ABC transporter permease LptG K11720 lptG; lipopolysaccharide export system permease protein
D CH54_3012 lptB; LPS export ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D CH54_2810 ftsX; putative protein insertion permease FtsX K09811 ftsX; cell division transport system permease protein
D CH54_2809 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D CH54_875 ABC transporter family protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D CH54_874 ABC transporter family protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D CH54_4099 msbA; lipid A export permease/ATP-binding protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D CH54_3699 ABC transporter family protein K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D CH54_3700 ABC transporter family protein K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D CH54_2349 ABC transporter family protein K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D CH54_88 ABC transporter family protein K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D CH54_1231 ABC transporter family protein K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter
D CH54_3972 type I secretion system ATPase family protein K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D CH54_2705 type I secretion system ATPase family protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D CH54_4075 cydC; thiol reductant ABC exporter, CydC subunit K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D CH54_4076 cydD; thiol reductant ABC exporter, CydD subunit K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D CH54_4069 ABC transporter family protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D CH54_1663 ABC transporter family protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
C 02060 Phosphotransferase system (PTS) [PATH:ykr02060]
D CH54_1296 ptsP; phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D CH54_1295 phosphocarrier, HPr family protein K02784 ptsH; phosphocarrier protein HPr
D CH54_1297 ptbA; PTS system, glucose subfamily, IIA component domain protein K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D CH54_86 ptsG; PTS system, glucose-specific IIBC component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
D CH54_1183 nagE; PTS system, N-acetylglucosamine-specific IIBC component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D CH54_447 PTS system, glucose-like IIB component domain protein K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D CH54_3985 phosphotransferase system, EIIB family protein K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D CH54_1238 PTS system, glucose-like IIB component domain protein K02753 ascF; beta-glucoside (arbutin/salicin/cellobiose) PTS system EIICB component [EC:2.7.1.-]
D CH54_3623 PTS system, alpha-glucoside-specific IIBC component domain protein K02750 glvC; alpha-glucoside PTS system EIICB component [EC:2.7.1.208 2.7.1.-]
D CH54_3001 treP; PTS system, trehalose-specific IIBC component K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D CH54_3095 phosphotransferase system, EIIC family protein K11192 murP; N-acetylmuramic acid PTS system EIICB component [EC:2.7.1.192]
D CH54_2469 mtlA; PTS system, mannitol-specific IIC component family protein K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D CH54_3873 PTS system, Lactose/Cellobiose specific IIA subunit K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D CH54_1539 PTS system, Lactose/Cellobiose specific IIA subunit K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D CH54_3876 PTS system, Lactose/Cellobiose specific IIB subunit K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D CH54_1542 PTS system, lactose/cellobiose family IIB component domain protein K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D CH54_3875 PTS system, lactose/cellobiose IIC component family protein K02761 celB; cellobiose PTS system EIIC component
D CH54_1541 celB; PTS system, cellobiose-specific IIC component K02761 celB; cellobiose PTS system EIIC component
D CH54_163 PTS system, mannose/fructose/sorbose, IIB component family protein K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D CH54_162 PTS system, mannose/fructose/sorbose, IIC component family protein K02795 manY; mannose PTS system EIIC component
D CH54_161 PTS system, mannose/fructose/sorbose, IID component family protein K02796 manZ; mannose PTS system EIID component
D CH54_1648 PTS system, mannose/fructose/sorbose family, IIA component domain protein K02812 sorF; sorbose PTS system EIIA component [EC:2.7.1.206]
D CH54_1649 PTS system, mannose/fructose/sorbose, IIB component family protein K02813 sorB; sorbose PTS system EIIB component [EC:2.7.1.206]
D CH54_1650 PTS system, mannose/fructose/sorbose, IIC component family protein K02814 sorA; sorbose PTS system EIIC component
D CH54_1651 PTS system, mannose/fructose/sorbose, IID component family protein K02815 sorM; sorbose PTS system EIID component
D CH54_1378 PTS system glucitol/sorbitol-specific IIA component family protein K02781 srlB; glucitol/sorbitol PTS system EIIA component [EC:2.7.1.198]
D CH54_1377 PTS system, glucitol/sorbitol-specific, IIBC component family protein K02782 srlE; glucitol/sorbitol PTS system EIIB component [EC:2.7.1.198]
D CH54_1376 srlA; PTS system, glucitol/sorbitol-specific, IIC component family protein K02783 srlA; glucitol/sorbitol PTS system EIIC component
D CH54_3911 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 family protein K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D CH54_3910 PTS system, Lactose/Cellobiose specific IIB subunit K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D CH54_3909 PTS system sugar-specific permease component family protein K03475 ulaA; ascorbate PTS system EIIC component
D CH54_4012 phosphocarrier, HPr family protein K11183 fruB; multiphosphoryl transfer protein [EC:2.7.1.202]
D CH54_4014 PTS system, Fru family, IIB component domain protein K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D CH54_4013 pfkB; 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D CH54_3485 ptsP; phosphoenolpyruvate-protein phosphotransferase K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D CH54_3007 phosphocarrier, HPr family protein K08485 ptsO; phosphocarrier protein NPr
D CH54_3009 ptsN; PTS IIA-like nitrogen-regulatory protein PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
C 03070 Bacterial secretion system [PATH:ykr03070]
D CH54_3121 type I secretion outer membrane, TolC family protein K12340 tolC; outer membrane protein
D CH54_2187 eprI; type III secretion apparatus needle protein K03221 yscF; type III secretion protein F
D CH54_2199 type III secretion outer membrane pore, YscC/HrcC family K03219 yscC; type III secretion protein C
D CH54_2184 type III secretion apparatus lipoprotein, YscJ/HrcJ family K03222 yscJ; type III secretion protein J
D CH54_2174 epaP; type III secretion apparatus protein, YscR/HrcR family K03226 yscR; type III secretion protein R
D CH54_2173 type III secretion, HrpO family protein K03227 yscS; type III secretion protein S
D CH54_2172 epaR; type III secretion apparatus protein SpaR/YscT/HrcT K03228 yscT; type III secretion protein T
D CH54_2171 type III secretion, YscU/HrpY family protein K03229 yscU; type III secretion protein U
D CH54_2179 type III secretion, HrcV family protein K03230 yscV; type III secretion protein V
D CH54_2178 ATPase, FliI/YscN family protein K03224 yscN; ATP synthase in type III secretion protein N [EC:7.4.2.8]
D CH54_2175 epaO; type III secretion apparatus protein, YscQ/HrcQ family K03225 yscQ; type III secretion protein Q
D CH54_3456 gspD; type II secretion system protein D K02453 gspD; general secretion pathway protein D
D CH54_3465 bacterial chaperone lipo family protein K02465 gspS; general secretion pathway protein S
D CH54_3455 type IV pilus biogenesis family protein K02452 gspC; general secretion pathway protein C
D CH54_3458 type II secretion system (T2SS), F family protein K02455 gspF; general secretion pathway protein F
D CH54_3459 gspG; type II secretion system protein G K02456 gspG; general secretion pathway protein G
D CH54_3460 gspI; type II secretion system protein I K02458 gspI; general secretion pathway protein I
D CH54_3461 gspJ; type II secretion system protein J K02459 gspJ; general secretion pathway protein J
D CH54_3462 type II secretion system (T2SS), K family protein K02460 gspK; general secretion pathway protein K
D CH54_3463 type II secretion system (T2SS), L family protein K02461 gspL; general secretion pathway protein L
D CH54_3457 gspE; type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D CH54_3466 type IV leader peptidase family protein K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-]
D CH54_3659 secD; export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D CH54_3660 secF; export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D CH54_2874 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D CH54_1983 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D CH54_2233 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D CH54_3658 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D CH54_2500 yidC; Preprotein translocase subunit YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CH54_1770 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D CH54_1771 secretion monitor family protein K13301 secM; secretion monitor
D CH54_2808 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D CH54_2662 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D CH54_1615 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D CH54_2843 tatA; twin arginine-targeting translocase, TatA/E family protein K03116 tatA; sec-independent protein translocase protein TatA
D CH54_2844 tatB; twin arginine-targeting protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB
D CH54_2845 tatC; twin arginine-targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
D CH54_1221 tatA; twin arginine-targeting translocase, TatA/E family protein K03425 tatE; sec-independent protein translocase protein TatE
D CH54_2911 hemolysin secretion/activation ShlB/FhaC/HecB family protein K11017 shlB; hemolysin activation/secretion protein
D CH54_2910 hypothetical protein K11016 shlA; hemolysin
D CH54_3265 Rhs element Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG
D CH54_3282 Rhs element Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG
D CH54_3346 phage late control protein K11904 vgrG; type VI secretion system secreted protein VgrG
D CH54_3325 Rhs element Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG
D CH54_3263 type VI secretion system effector, Hcp1 family protein K11903 hcp; type VI secretion system secreted protein Hcp
D CH54_3321 type VI secretion system effector, Hcp1 family protein K11903 hcp; type VI secretion system secreted protein Hcp
D CH54_3281 type VI secretion lipofamily protein K11906 vasD; type VI secretion system protein VasD
D CH54_3338 type VI secretion lipofamily protein K11906 vasD; type VI secretion system protein VasD
D CH54_3277 intracellular multiplication and macrophage-killing family protein K11891 impL; type VI secretion system protein ImpL
D CH54_3334 intracellular multiplication and macrophage-killing family protein K11891 impL; type VI secretion system protein ImpL
D CH54_3261 type IV/VI secretion system, DotU family domain protein K11892 impK; type VI secretion system protein ImpK
D CH54_3319 type IV/VI secretion system, DotU family domain protein K11892 impK; type VI secretion system protein ImpK
D CH54_3264 clpV; type VI secretion ATPase, ClpV1 family K11907 vasG; type VI secretion system protein VasG
D CH54_3322 clpV; type VI secretion ATPase, ClpV1 family K11907 vasG; type VI secretion system protein VasG
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:ykr02020]
D CH54_3644 phoR; phosphate regulon sensor kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D CH54_3643 phoB; phosphate regulon transcriptional regulatory protein PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D CH54_388 alkaline phosphatase family protein K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D CH54_3645 pstS; phosphate ABC transporter, phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D CH54_2521 pstS; phosphate ABC transporter, phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D CH54_111 HAMP domain protein K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D CH54_112 hypothetical protein K07660 phoP; two-component system, OmpR family, response regulator PhoP
D CH54_2319 HAMP domain protein K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D CH54_2320 hypothetical protein K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D CH54_3974 gram-negative porin family protein K09475 ompC; outer membrane pore protein C
D CH54_4116 gram-negative porin family protein K09476 ompF; outer membrane pore protein F
D CH54_2667 HAMP domain protein K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D CH54_2668 hypothetical protein K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D CH54_3073 hypothetical protein K25864 mzrA; modulator protein MzrA
D CH54_372 HAMP domain protein K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3]
D CH54_373 response regulator K07661 rstA; two-component system, OmpR family, response regulator RstA
D CH54_1712 peptidase Do family protein K04771 degP; serine protease Do [EC:3.4.21.107]
D CH54_3416 HAMP domain protein K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3]
D CH54_3415 hypothetical protein K07663 creB; two-component system, OmpR family, catabolic regulation response regulator CreB
D CH54_1371 HAMP domain protein K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3]
D CH54_1372 response regulator K07664 baeR; two-component system, OmpR family, response regulator BaeR
D CH54_1368 efflux transporter, RND family, MFP subunit K07799 mdtA; membrane fusion protein, multidrug efflux system
D CH54_1369 acrB/AcrD/AcrF family protein K07788 mdtB; multidrug efflux pump
D CH54_1370 acrB/AcrD/AcrF family protein K07789 mdtC; multidrug efflux pump
D CH54_1328 RND transporter, hydrophobe/amphiphile efflux-1 family protein K18324 acrD; multidrug efflux pump
D CH54_1992 HAMP domain protein K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3]
D CH54_1991 hypothetical protein K07771 basR; two-component system, OmpR family, response regulator BasR
D CH54_264 beta-eliminating lyase family protein K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87]
D CH54_3159 copper binding periplasmic CusF family protein K07810 cusF; Cu(I)/Ag(I) efflux system periplasmic protein CusF
D CH54_3157 efflux transporter, RND family, MFP subunit K07798 cusB; membrane fusion protein, copper/silver efflux system
D CH54_3156 heavy metal efflux pump, CzcA family protein K07787 cusA; copper/silver efflux system protein
D CH54_816 flagellar transcriptional activator family protein K02403 flhD; flagellar transcriptional activator FlhD
D CH54_815 flagellar transcriptional activator family protein K02402 flhC; flagellar transcriptional activator FlhC
D CH54_764 hypothetical protein K02406 fliC; flagellin
D CH54_3209 hypothetical protein K02406 fliC; flagellin
D CH54_763 RNA polymerase sigma factor, FliA/WhiG family protein K02405 fliA; RNA polymerase sigma factor FliA
D CH54_3215 RNA polymerase sigma factor, FliA/WhiG family protein K02405 fliA; RNA polymerase sigma factor FliA
D CH54_814 motA; flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA
D CH54_3216 motA; flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA
D CH54_1167 universal stress family protein K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D CH54_1168 hypothetical protein K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D CH54_1164 kdpA; K+-transporting ATPase, A subunit K01546 kdpA; potassium-transporting ATPase potassium-binding subunit
D CH54_1165 kdpB; K+-transporting ATPase, B subunit K01547 kdpB; potassium-transporting ATPase ATP-binding subunit [EC:7.2.2.6]
D CH54_1166 kdpC; K+-transporting ATPase, C subunit K01548 kdpC; potassium-transporting ATPase KdpC subunit
D CH54_3037 sensory box protein K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D CH54_1849 hypothetical protein K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA
D CH54_2496 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D CH54_1751 TonB-dependent siderophore receptor family protein K19611 fepA; ferric enterobactin receptor
D CH54_864 sensory box protein K07700 dpiB; two-component system, CitB family, cit operon sensor histidine kinase CitA [EC:2.7.13.3]
D CH54_865 response regulator K07702 dpiA; two-component system, CitB family, response regulator CitB
D CH54_863 citC; [citrate (pro-3S)-lyase] ligase K01910 citC; [citrate (pro-3S)-lyase] ligase [EC:6.2.1.22]
D CH54_862 citD; citrate lyase acyl carrier protein K01646 citD; citrate lyase subunit gamma (acyl carrier protein)
D CH54_861 hpcH/HpaI aldolase/citrate lyase family protein K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34]
D CH54_860 citF; citrate lyase, alpha subunit K01643 citF; citrate lyase subunit alpha / citrate CoA-transferase [EC:2.8.3.10]
D CH54_859 citX; holo-ACP synthase CitX K05964 citX; holo-ACP synthase [EC:2.7.7.61]
D CH54_858 citG; triphosphoribosyl-dephospho-CoA synthase CitG K05966 citG; triphosphoribosyl-dephospho-CoA synthase [EC:2.4.2.52]
D CH54_857 transporter, divalent anion:Na+ symporter family protein K09477 citT; citrate:succinate antiporter
D CH54_718 PAS fold family protein K07701 dcuS; two-component system, CitB family, sensor histidine kinase DcuS [EC:2.7.13.3]
D CH54_719 response regulator K07703 dcuR; two-component system, CitB family, response regulator DcuR
D CH54_1609 transporter, anaerobic C4-dicarboxylate uptake family protein K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D CH54_1004 malic enzyme, NAD binding domain protein K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D CH54_720 2-hydroxycarboxylate transporter family protein K11616 maeN; malate:Na+ symporter
D CH54_686 histidine kinase family protein K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3]
D CH54_1326 bacterial regulatory s, luxR family protein K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP
D CH54_2053 frdA; fumarate reductase, flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D CH54_2054 succinate dehydrogenase and fumarate reductase iron-sulfur family protein K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D CH54_2055 fumarate reductase subunit C family protein K00246 frdC; succinate dehydrogenase subunit C
D CH54_2056 fumarate reductase subunit D family protein K00247 frdD; succinate dehydrogenase subunit D
D CH54_2424 phosphoglycerate transporter family protein K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC
D CH54_868 major Facilitator Superfamily protein K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC
D CH54_2425 histidine kinase family protein K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D CH54_2426 bacterial regulatory s, luxR family protein K07686 uhpA; two-component system, NarL family, uhpT operon response regulator UhpA
D CH54_867 histidine kinase family protein K20263 fusK; two-component system, NarL family, sensor histidine kinase FusK [EC:2.7.13.3]
D CH54_866 bacterial regulatory s, luxR family protein K20264 fusR; two-component system, NarL family, response regulator FusR
D CH54_3550 putative lipoprotein K06080 rcsF; RcsF protein
D CH54_3966 rcsC Alpha-Beta-Loop family protein K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D CH54_3968 hpt domain protein K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3]
D CH54_3967 bacterial regulatory s, luxR family protein K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB
D CH54_1711 HAMP domain protein K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D CH54_730 bacterial regulatory s, luxR family protein K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D CH54_1626 csrA; carbon storage regulator K03563 csrA; carbon storage regulator
D CH54_2438 bacterial regulatory s, luxR family protein K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3]
D CH54_46 bacterial extracellular solute-binding s, 3 family protein K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3]
D CH54_896 hpt domain protein K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3]
D CH54_517 response regulator K07690 evgA; two-component system, NarL family, response regulator EvgA
D CH54_521 bacterial regulatory s, luxR family protein K07688 fimZ; two-component system, NarL family, response regulator, fimbrial Z protein, FimZ
D CH54_2437 response regulator K07688 fimZ; two-component system, NarL family, response regulator, fimbrial Z protein, FimZ
D CH54_895 bacterial regulatory s, luxR family protein K07688 fimZ; two-component system, NarL family, response regulator, fimbrial Z protein, FimZ
D CH54_188 beta-lactamase family protein K01467 ampC; beta-lactamase class C [EC:3.5.2.6]
D CH54_209 spore Coat Protein U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D CH54_205 spore Coat Protein U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D CH54_208 spore Coat Protein U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D CH54_210 spore Coat Protein U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D CH54_2377 hypothetical protein K07346 fimC; fimbrial chaperone protein
D CH54_207 hypothetical protein K07346 fimC; fimbrial chaperone protein
D CH54_2742 hypothetical protein K07346 fimC; fimbrial chaperone protein
D CH54_2376 hypothetical protein K07347 fimD; outer membrane usher protein
D CH54_206 outer membrane usher family protein K07347 fimD; outer membrane usher protein
D CH54_899 hypothetical protein K07347 fimD; outer membrane usher protein
D CH54_2741 hypothetical protein K07347 fimD; outer membrane usher protein
D CH54_3151 hypothetical protein K02279 cpaB; pilus assembly protein CpaB
D CH54_3150 bacterial type II and III secretion system family protein K02280 cpaC; pilus assembly protein CpaC
D CH54_3148 hypothetical protein K02282 cpaE; pilus assembly protein CpaE
D CH54_3147 type II/IV secretion system family protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D CH54_3146 type II secretion system (T2SS), F family protein K12510 tadB; tight adherence protein B
D CH54_3145 type II secretion system (T2SS), F family protein K12511 tadC; tight adherence protein C
D CH54_3518 glnD; protein-P-II uridylyltransferase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D CH54_1479 nitrogen regulatory P-II family protein K04751 glnB; nitrogen regulatory protein P-II 1
D CH54_2565 PAS fold family protein K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D CH54_2564 ntrC; nitrogen regulation protein NR K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D CH54_2566 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CH54_2401 dicarboxylate symporter family protein K11103 dctA; aerobic C4-dicarboxylate transport protein
D CH54_3011 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D CH54_1483 HAMP domain protein K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D CH54_1481 AAA domain family protein K07715 glrR; two-component system, NtrC family, response regulator GlrR
D CH54_3219 hydrogenase family protein K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]
D CH54_3222 nickel-dependent hydrogenase family protein K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6]
D CH54_808 methyltransferase domain protein K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D CH54_1055 sensory box protein K03406 mcp; methyl-accepting chemotaxis protein
D CH54_1176 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein
D CH54_2506 methyl-accepting chemotaxis (MCP) signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein
D CH54_3980 methyl-accepting chemotaxis (MCP) signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein
D CH54_810 hypothetical protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D CH54_2006 hypothetical protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D CH54_2463 methyl-accepting chemotaxis (MCP) signaling domain protein K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor
D CH54_821 hypothetical protein K05876 trg; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor
D CH54_809 hypothetical protein K05877 tap; methyl-accepting chemotaxis protein IV, peptide sensor receptor
D CH54_126 sensory box protein K03776 aer; aerotaxis receptor
D CH54_811 cheW-like domain protein K03408 cheW; purine-binding chemotaxis protein CheW
D CH54_812 signal transducing histidine kinase, homodimeric domain protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D CH54_806 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D CH54_807 cheB methylesterase family protein K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D CH54_903 response regulator K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D CH54_2509 bacterial regulatory s, luxR family protein K13041 ttrR; two-component system, LuxR family, response regulator TtrR
D CH54_2201 response regulator K14978 ssrA; two-component system, LuxR family, secretion system sensor histidine kinase SsrA
D CH54_2202 bacterial regulatory s, luxR family protein K14979 ssrB; two-component system, LuxR family, secretion system response regulator SsrB
D CH54_3185 AAA domain family protein K10943 flrC; two-component system, response regulator FlrC
D CH54_1205 ABC transporter family protein K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D CH54_1204 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10002 gltK; glutamate/aspartate transport system permease protein
D CH54_1203 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10003 gltJ; glutamate/aspartate transport system permease protein
D CH54_1202 bacterial extracellular solute-binding s, 3 family protein K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D CH54_2284 bacterial regulatory s, crp family protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D CH54_2587 enoyl-CoA hydratase/isomerase family protein K13816 rpfF; DSF synthase
D CH54_3364 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2]
D CH54_713 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2]
D CH54_3094 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2]
D CH54_1142 bacterial Cytochrome Ubiquinol Oxidase family protein K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D CH54_684 bacterial Cytochrome Ubiquinol Oxidase family protein K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D CH54_1141 cydB; cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D CH54_685 cydB; cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D CH54_1140 cyd operon protein YbgT K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7]
D CH54_461 type I secretion system ATPase family protein K12530 rtxB; ATP-binding cassette, subfamily B, bacterial RtxB
D CH54_460 type I secretion membrane fusion, HlyD family protein K12532 rtxD; membrane fusion protein, RTX toxin transport system
D CH54_459 type I secretion system ATPase family protein K12531 rtxE; ATP-binding cassette, subfamily B, bacterial RtxE
D CH54_3121 type I secretion outer membrane, TolC family protein K12340 tolC; outer membrane protein
D CH54_2752 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D CH54_2753 nucleotide sugar dehydrogenase family protein K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
D CH54_798 flgM; flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D CH54_3193 anti-sigma-28 factor, FlgM family protein K02398 flgM; negative regulator of flagellin synthesis FlgM
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
D CH54_3357 beta-eliminating lyase family protein K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D CH54_1964 beta-eliminating lyase family protein K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:ykr02024]
D CH54_1618 S-Ribosylhomocysteinase family protein K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D CH54_2038 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein
D CH54_525 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D CH54_526 glutamine amidotransferase of anthranilate synthase/aminodeoxychorismate synthase family protein K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D CH54_277 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D CH54_1607 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D CH54_1124 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D CH54_1483 HAMP domain protein K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D CH54_1481 AAA domain family protein K07715 glrR; two-component system, NtrC family, response regulator GlrR
D CH54_816 flagellar transcriptional activator family protein K02403 flhD; flagellar transcriptional activator FlhD
D CH54_815 flagellar transcriptional activator family protein K02402 flhC; flagellar transcriptional activator FlhC
D CH54_1168 hypothetical protein K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D CH54_867 histidine kinase family protein K20263 fusK; two-component system, NarL family, sensor histidine kinase FusK [EC:2.7.13.3]
D CH54_866 bacterial regulatory s, luxR family protein K20264 fusR; two-component system, NarL family, response regulator FusR
D CH54_3092 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D CH54_3093 amino acid permease family protein K20265 gadC; glutamate:GABA antiporter
D CH54_1906 periplasmic binding domain protein K10555 lsrB; AI-2 transport system substrate-binding protein
D CH54_1904 branched-chain amino acid transport system / permease component family protein K10556 lsrC; AI-2 transport system permease protein
D CH54_1905 branched-chain amino acid transport system / permease component family protein K10557 lsrD; AI-2 transport system permease protein
D CH54_1903 ccmA; heme ABC exporter, ATP-binding protein CcmA K10558 lsrA; AI-2 transport system ATP-binding protein
D CH54_1901 hypothetical protein K11216 lsrK; autoinducer-2 kinase [EC:2.7.1.189]
D CH54_1902 putative sugar-binding domain protein K11531 lsrR; lsr operon transcriptional repressor
D CH54_1907 deoC/LacD aldolase family protein K08321 lsrF; 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase [EC:2.3.1.245]
D CH54_1908 antibiotic biosynthesis monooxygenase family protein K11530 lsrG; (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase [EC:5.3.1.32]
D CH54_1643 periplasmic binding domain protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D CH54_2814 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D CH54_2815 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein
D CH54_2816 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein
D CH54_2817 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D CH54_2818 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D CH54_1490 bacterial regulatory s, luxR family protein K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR
D CH54_2402 periplasmic pectate lyase family protein K01728 pel; pectate lyase [EC:4.2.2.2]
D CH54_2587 enoyl-CoA hydratase/isomerase family protein K13816 rpfF; DSF synthase
D CH54_2588 diguanylate cyclase domain protein K14051 gmr; c-di-GMP phosphodiesterase Gmr [EC:3.1.4.52]
D CH54_3970 bacterial Ig-like domain family protein K20276 bapA; large repetitive protein
D CH54_604 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D CH54_1793 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D CH54_2284 bacterial regulatory s, crp family protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D CH54_2930 ferric uptake regulator family protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D CH54_492 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D CH54_3663 ribD; riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D CH54_548 bacterial extracellular solute-binding s, 5 Middle family protein K15580 oppA; oligopeptide transport system substrate-binding protein
D CH54_549 bacterial extracellular solute-binding s, 5 Middle family protein K15580 oppA; oligopeptide transport system substrate-binding protein
D CH54_351 bacterial extracellular solute-binding s, 5 Middle family protein K15580 oppA; oligopeptide transport system substrate-binding protein
D CH54_547 binding--dependent transport system inner membrane component family protein K15581 oppB; oligopeptide transport system permease protein
D CH54_546 binding--dependent transport system inner membrane component family protein K15582 oppC; oligopeptide transport system permease protein
D CH54_545 hypothetical protein K15583 oppD; oligopeptide transport system ATP-binding protein
D CH54_544 hypothetical protein K10823 oppF; oligopeptide transport system ATP-binding protein
D CH54_879 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D CH54_1563 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D CH54_1938 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D CH54_878 binding--dependent transport system inner membrane component family protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D CH54_1562 binding--dependent transport system inner membrane component family protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D CH54_1939 binding--dependent transport system inner membrane component family protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D CH54_877 binding--dependent transport system inner membrane component family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D CH54_1561 binding--dependent transport system inner membrane component family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D CH54_1940 binding--dependent transport system inner membrane component family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D CH54_876 ccmA; heme ABC exporter, ATP-binding protein CcmA K02031 ddpD; peptide/nickel transport system ATP-binding protein
D CH54_1941 ABC transporter family protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D CH54_1560 ABC transporter family protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D CH54_1559 ABC transporter family protein K02032 ddpF; peptide/nickel transport system ATP-binding protein
D CH54_1942 ABC transporter family protein K02032 ddpF; peptide/nickel transport system ATP-binding protein
D CH54_2500 yidC; Preprotein translocase subunit YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CH54_2874 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D CH54_1983 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D CH54_2233 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D CH54_3658 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D CH54_1770 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D CH54_2808 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D CH54_2662 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D CH54_1615 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:ykr02030]
D CH54_1055 sensory box protein K03406 mcp; methyl-accepting chemotaxis protein
D CH54_1176 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein
D CH54_2506 methyl-accepting chemotaxis (MCP) signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein
D CH54_3980 methyl-accepting chemotaxis (MCP) signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein
D CH54_810 hypothetical protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D CH54_2006 hypothetical protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D CH54_2463 methyl-accepting chemotaxis (MCP) signaling domain protein K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor
D CH54_821 hypothetical protein K05876 trg; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor
D CH54_809 hypothetical protein K05877 tap; methyl-accepting chemotaxis protein IV, peptide sensor receptor
D CH54_126 sensory box protein K03776 aer; aerotaxis receptor
D CH54_2919 bacterial extracellular solute-binding family protein K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D CH54_2546 periplasmic binding domain protein K10439 rbsB; ribose transport system substrate-binding protein
D CH54_1025 periplasmic binding domain protein K10540 mglB; methyl-galactoside transport system substrate-binding protein
D CH54_2418 bacterial extracellular solute-binding s, 5 Middle family protein K12368 dppA; dipeptide transport system substrate-binding protein
D CH54_812 signal transducing histidine kinase, homodimeric domain protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D CH54_811 cheW-like domain protein K03408 cheW; purine-binding chemotaxis protein CheW
D CH54_806 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D CH54_805 chemotaxis phosphatase, CheZ family protein K03414 cheZ; chemotaxis protein CheZ
D CH54_807 cheB methylesterase family protein K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D CH54_903 response regulator K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D CH54_808 methyltransferase domain protein K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D CH54_774 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D CH54_3188 fliG middle domain protein K02410 fliG; flagellar motor switch protein FliG
D CH54_780 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D CH54_3184 surface presentation of antigens family protein K02416 fliM; flagellar motor switch protein FliM
D CH54_781 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D CH54_3183 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D CH54_814 motA; flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA
D CH54_3216 motA; flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA
D CH54_813 membrane MotB of proton-channel complex MotA/MotB family protein K02557 motB; chemotaxis protein MotB
D CH54_3217 membrane MotB of proton-channel complex MotA/MotB family protein K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:ykr02040]
D CH54_772 fliE; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D CH54_3186 fliE; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D CH54_773 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D CH54_3187 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D CH54_774 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D CH54_3188 fliG middle domain protein K02410 fliG; flagellar motor switch protein FliG
D CH54_775 flagellar assembly FliH family protein K02411 fliH; flagellar assembly protein FliH
D CH54_3189 hypothetical protein K02411 fliH; flagellar assembly protein FliH
D CH54_776 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D CH54_3190 ATPase, FliI/YscN family protein K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D CH54_777 fliJ; flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ
D CH54_778 flagellar hook-length control FliK family protein K02414 fliK; flagellar hook-length control protein FliK
D CH54_3213 flagellar hook-length control FliK family protein K02414 fliK; flagellar hook-length control protein FliK
D CH54_779 flagellar basal body-associated FliL family protein K02415 fliL; flagellar protein FliL
D CH54_3214 flagellar basal body-associated FliL family protein K02415 fliL; flagellar protein FliL
D CH54_780 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D CH54_3184 surface presentation of antigens family protein K02416 fliM; flagellar motor switch protein FliM
D CH54_781 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D CH54_3183 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D CH54_782 fliO; flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ
D CH54_783 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D CH54_3182 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D CH54_784 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D CH54_3181 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D CH54_785 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D CH54_3180 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D CH54_800 flagellar FlhE family protein K03516 flhE; flagellar protein FlhE
D CH54_802 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D CH54_3178 FHIPEP family protein K02400 flhA; flagellar biosynthesis protein FlhA
D CH54_803 flhB; flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D CH54_3179 flhB HrpN YscU SpaS family protein K02401 flhB; flagellar biosynthesis protein FlhB
D CH54_797 flgA; flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D CH54_3194 flgA; flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D CH54_796 flgB; flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D CH54_3195 flgB; flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D CH54_795 flgC; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D CH54_3196 flgC; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D CH54_794 hypothetical protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D CH54_3197 hypothetical protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D CH54_793 flagellar hook-basal body family protein K02390 flgE; flagellar hook protein FlgE
D CH54_3198 flagellar hook-basal body family protein K02390 flgE; flagellar hook protein FlgE
D CH54_792 flagellar hook-basal body family protein K02391 flgF; flagellar basal-body rod protein FlgF
D CH54_3199 flgF; flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D CH54_791 flgG; flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D CH54_3200 flgG; flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D CH54_790 flagellar L-ring family protein K02393 flgH; flagellar L-ring protein FlgH
D CH54_3201 flagellar L-ring family protein K02393 flgH; flagellar L-ring protein FlgH
D CH54_789 flagellar P-ring family protein K02394 flgI; flagellar P-ring protein FlgI
D CH54_3202 flagellar P-ring family protein K02394 flgI; flagellar P-ring protein FlgI
D CH54_788 flgJ; flagellar rod assembly protein/muramidase FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ
D CH54_3203 rod binding family protein K02395 flgJ; peptidoglycan hydrolase FlgJ
D CH54_787 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D CH54_3204 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D CH54_786 flgL; flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D CH54_3205 flgL; flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D CH54_764 hypothetical protein K02406 fliC; flagellin
D CH54_3209 hypothetical protein K02406 fliC; flagellin
D CH54_765 flagellar hook-associated family protein K02407 fliD; flagellar hook-associated protein 2
D CH54_3210 flagellar hook-associated family protein K02407 fliD; flagellar hook-associated protein 2
D CH54_766 fliS; flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D CH54_3211 fliS; flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D CH54_767 flagellar FliT family protein K02423 fliT; flagellar protein FliT
D CH54_814 motA; flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA
D CH54_3216 motA; flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA
D CH54_813 membrane MotB of proton-channel complex MotA/MotB family protein K02557 motB; chemotaxis protein MotB
D CH54_3217 membrane MotB of proton-channel complex MotA/MotB family protein K02557 motB; chemotaxis protein MotB
D CH54_798 flgM; flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D CH54_3193 anti-sigma-28 factor, FlgM family protein K02398 flgM; negative regulator of flagellin synthesis FlgM
D CH54_799 flgN family protein K02399 flgN; flagellar biosynthesis protein FlgN
D CH54_3192 flgN family protein K02399 flgN; flagellar biosynthesis protein FlgN
D CH54_760 bacterial extracellular solute-binding s, 3 family protein K02424 tcyA; L-cystine transport system substrate-binding protein
D CH54_762 fliZ; flagellar regulatory protein FliZ K02425 fliZ; regulator of sigma S factor FliZ
D CH54_3102 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D CH54_816 flagellar transcriptional activator family protein K02403 flhD; flagellar transcriptional activator FlhD
D CH54_815 flagellar transcriptional activator family protein K02402 flhC; flagellar transcriptional activator FlhC
D CH54_3011 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D CH54_3185 AAA domain family protein K10943 flrC; two-component system, response regulator FlrC
D CH54_763 RNA polymerase sigma factor, FliA/WhiG family protein K02405 fliA; RNA polymerase sigma factor FliA
D CH54_3215 RNA polymerase sigma factor, FliA/WhiG family protein K02405 fliA; RNA polymerase sigma factor FliA
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D CH54_1707 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
D CH54_2909 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
D CH54_519 bacterial Ig-like domain family protein K13735 yeeJ; adhesin/invasin
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
D CH54_519 bacterial Ig-like domain family protein K13735 yeeJ; adhesin/invasin
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:ykr01501]
D CH54_4116 gram-negative porin family protein K09476 ompF; outer membrane pore protein F
D CH54_3974 gram-negative porin family protein K09475 ompC; outer membrane pore protein C
D CH54_3682 AmpG-like permease family protein K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D CH54_98 hypothetical protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D CH54_3098 hypothetical protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D CH54_188 beta-lactamase family protein K01467 ampC; beta-lactamase class C [EC:3.5.2.6]
D CH54_548 bacterial extracellular solute-binding s, 5 Middle family protein K15580 oppA; oligopeptide transport system substrate-binding protein
D CH54_549 bacterial extracellular solute-binding s, 5 Middle family protein K15580 oppA; oligopeptide transport system substrate-binding protein
D CH54_351 bacterial extracellular solute-binding s, 5 Middle family protein K15580 oppA; oligopeptide transport system substrate-binding protein
D CH54_547 binding--dependent transport system inner membrane component family protein K15581 oppB; oligopeptide transport system permease protein
D CH54_546 binding--dependent transport system inner membrane component family protein K15582 oppC; oligopeptide transport system permease protein
D CH54_545 hypothetical protein K15583 oppD; oligopeptide transport system ATP-binding protein
D CH54_544 hypothetical protein K10823 oppF; oligopeptide transport system ATP-binding protein
D CH54_3720 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D CH54_3719 RND transporter, hydrophobe/amphiphile efflux-1 family protein K18138 acrB; multidrug efflux pump
D CH54_3234 RND transporter, hydrophobe/amphiphile efflux-1 family protein K18138 acrB; multidrug efflux pump
D CH54_3121 type I secretion outer membrane, TolC family protein K12340 tolC; outer membrane protein
D CH54_2312 penicillin-binding, 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D CH54_1214 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D CH54_154 penicillin binding transpeptidase domain protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D CH54_1785 penicillin binding transpeptidase domain protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:ykr01502]
D CH54_1777 D-alanine--D-alanine ligase family protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D CH54_3593 D-alanine--D-alanine ligase family protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D CH54_587 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D CH54_2936 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D CH54_1783 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family protein K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D CH54_1782 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D CH54_1779 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:ykr01503]
D CH54_111 HAMP domain protein K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D CH54_112 hypothetical protein K07660 phoP; two-component system, OmpR family, response regulator PhoP
D CH54_2427 hypothetical protein K12975 eptB; KDO II ethanolaminephosphotransferase [EC:2.7.8.42]
D CH54_151 antimicrobial peptide resistance and lipid A acylation PagP family protein K12973 pagP; lipid IVA palmitoyltransferase [EC:2.3.1.251]
D CH54_264 beta-eliminating lyase family protein K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87]
D CH54_265 glycosyltransferase like 2 family protein K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53]
D CH54_266 3-beta hydroxysteroid dehydrogenase/isomerase family protein K10011 arnA; UDP-4-amino-4-deoxy-L-arabinose formyltransferase / UDP-glucuronic acid dehydrogenase (UDP-4-keto-hexauronic acid decarboxylating) [EC:2.1.2.13 1.1.1.305]
D CH54_267 polysaccharide deacetylase family protein K13014 arnD; undecaprenyl phosphate-alpha-L-ara4FN deformylase [EC:3.5.1.-]
D CH54_268 dolichyl-phosphate-mannose-mannosyltransferase family protein K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43]
D CH54_269 small Multidrug Resistance family protein K12962 arnE; undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnE
D CH54_270 eamA-like transporter family protein K12963 arnF; undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnF
D CH54_1992 HAMP domain protein K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3]
D CH54_1991 hypothetical protein K07771 basR; two-component system, OmpR family, response regulator BasR
D CH54_309 hypothetical protein K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D CH54_335 bacterial extracellular solute-binding s, 5 Middle family protein K19226 sapA; cationic peptide transport system substrate-binding protein
D CH54_334 binding--dependent transport system inner membrane component family protein K19227 sapB; cationic peptide transport system permease protein
D CH54_333 binding--dependent transport system inner membrane component family protein K19228 sapC; cationic peptide transport system permease protein
D CH54_332 hypothetical protein K19229 sapD; cationic peptide transport system ATP-binding protein
D CH54_331 ABC transporter family protein K19230 sapF; cationic peptide transport system ATP-binding protein
D CH54_2388 hypothetical protein K01406 prtC; serralysin [EC:3.4.24.40]
D CH54_3547 hypothetical protein K06079 cutF; copper homeostasis protein (lipoprotein)
D CH54_2667 HAMP domain protein K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D CH54_2668 hypothetical protein K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D CH54_3497 N-acetylmuramoyl-L-alanine amidase family protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CH54_2041 N-acetylmuramoyl-L-alanine amidase family protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CH54_289 L,D-transpeptidase catalytic domain protein K19236 ycfS; L,D-transpeptidase YcfS
D CH54_1712 peptidase Do family protein K04771 degP; serine protease Do [EC:3.4.21.107]
D CH54_2559 DSBA-like thioredoxin domain protein K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D CH54_1667 DSBA-like thioredoxin domain protein K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D CH54_2290 cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD family protein K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D CH54_3720 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D CH54_3719 RND transporter, hydrophobe/amphiphile efflux-1 family protein K18138 acrB; multidrug efflux pump
D CH54_3234 RND transporter, hydrophobe/amphiphile efflux-1 family protein K18138 acrB; multidrug efflux pump
D CH54_3121 type I secretion outer membrane, TolC family protein K12340 tolC; outer membrane protein
D CH54_593 lpxA; acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D CH54_3532 lpxA; acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:ykr01000]
C 01001 Protein kinases [BR:ykr01001]
D CH54_137 RIO1 family protein K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D CH54_2450 hypothetical protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D CH54_3644 phoR; phosphate regulon sensor kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D CH54_111 HAMP domain protein K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D CH54_2319 HAMP domain protein K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D CH54_372 HAMP domain protein K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3]
D CH54_2667 HAMP domain protein K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D CH54_3416 HAMP domain protein K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3]
D CH54_1371 HAMP domain protein K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3]
D CH54_1992 HAMP domain protein K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3]
D CH54_1167 universal stress family protein K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D CH54_3037 sensory box protein K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D CH54_1298 HAMP domain protein K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D CH54_686 histidine kinase family protein K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3]
D CH54_2425 histidine kinase family protein K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D CH54_867 histidine kinase family protein K20263 fusK; two-component system, NarL family, sensor histidine kinase FusK [EC:2.7.13.3]
D CH54_3968 hpt domain protein K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3]
D CH54_3966 rcsC Alpha-Beta-Loop family protein K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D CH54_1711 HAMP domain protein K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D CH54_2438 bacterial regulatory s, luxR family protein K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3]
D CH54_46 bacterial extracellular solute-binding s, 3 family protein K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3]
D CH54_896 hpt domain protein K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3]
D CH54_864 sensory box protein K07700 dpiB; two-component system, CitB family, cit operon sensor histidine kinase CitA [EC:2.7.13.3]
D CH54_718 PAS fold family protein K07701 dcuS; two-component system, CitB family, sensor histidine kinase DcuS [EC:2.7.13.3]
D CH54_2348 histidine kinase family protein K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D CH54_1269 5TMR of 5TMR-LYT family protein K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D CH54_2565 PAS fold family protein K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D CH54_1483 HAMP domain protein K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D CH54_812 signal transducing histidine kinase, homodimeric domain protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D CH54_2201 response regulator K14978 ssrA; two-component system, LuxR family, secretion system sensor histidine kinase SsrA
C 01009 Protein phosphatases and associated proteins [BR:ykr01009]
D CH54_2671 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D CH54_3730 hsp90 family protein K04079 HSP90A; molecular chaperone HtpG
D CH54_1863 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:ykr01002]
D CH54_1831 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D CH54_3466 type IV leader peptidase family protein K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-]
D CH54_3152 type IV leader peptidase family protein K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D CH54_3981 omptin family protein K08566 pla; plasminogen activator [EC:3.4.23.48]
D CH54_3223 hybD; hydrogenase expression/formation protein K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-]
D CH54_1018 hycI; hydrogenase maturation peptidase HycI K08315 hycI; hydrogenase 3 maturation protease [EC:3.4.23.51]
D CH54_1153 pcp; pyroglutamyl-peptidase I K01304 pcp; pyroglutamyl-peptidase [EC:3.4.19.3]
D CH54_1440 guaA; GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D CH54_2349 ABC transporter family protein K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D CH54_88 ABC transporter family protein K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D CH54_4001 nlpC/P60 family protein K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]
D CH54_303 nlpC/P60 family protein K19303 mepH; murein DD-endopeptidase [EC:3.4.-.-]
D CH54_271 nlpC/P60 family protein K13695 nlpC; probable lipoprotein NlpC
D CH54_3899 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D CH54_3035 glutamine amidotransferases class-II family protein K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D CH54_2523 glmS; glutamine-fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D CH54_1188 asnB; asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D CH54_3672 DJ-1 family protein K03152 thiJ; protein deglycase [EC:3.5.1.124]
D CH54_289 L,D-transpeptidase catalytic domain protein K19236 ycfS; L,D-transpeptidase YcfS
D CH54_4111 L,D-transpeptidase catalytic domain protein K21470 ycbB; L,D-transpeptidase YcbB
D CH54_1117 CAAX protease self-immunity family protein K07052 K07052; CAAX protease family protein
D CH54_4119 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D CH54_2390 peptidase M3 family protein K01414 prlC; oligopeptidase A [EC:3.4.24.70]
D CH54_2388 hypothetical protein K01406 prtC; serralysin [EC:3.4.24.40]
D CH54_2613 D-alanyl-D-alanine carboxypeptidase family protein K17733 cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]
D CH54_3493 insulinase family protein K01407 ptrA; protease III [EC:3.4.24.55]
D CH54_2400 insulinase family protein K07263 pqqL; zinc protease [EC:3.4.24.-]
D CH54_1931 hypothetical protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D CH54_1459 peptidase family protein K07751 pepB; PepB aminopeptidase [EC:3.4.11.23]
D CH54_1336 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D CH54_109 pepT; peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
D CH54_3238 pepT; peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
D CH54_3598 pepD; Xaa-His dipeptidase family protein K01270 pepD; dipeptidase D [EC:3.4.13.-]
D CH54_616 lysM domain protein K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-]
D CH54_3250 map; methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D CH54_3519 map; methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D CH54_2854 metallopeptidase M24 family protein K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9]
D CH54_3403 hypothetical protein K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D CH54_1696 peptidase M20/M25/M40 family protein K09612 iap; alkaline phosphatase isozyme conversion protein [EC:3.4.11.-]
D CH54_371 carboxypeptidase Taq (M32) metallopeptidase family protein K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19]
D CH54_1986 hflB; ATP-dependent metallopeptidase HflB family protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D CH54_218 peptidase M48 family protein K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D CH54_3388 peptidase M48 family protein K07387 K07387; metalloprotease [EC:3.4.24.-]
D CH54_1349 peptidase M48 family protein K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-]
D CH54_3527 rseP; RIP metalloprotease RseP K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D CH54_3864 penicillin-insensitive murein endopeptidase family protein K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-]
D CH54_846 glucose-regulated metallo-peptidase M90 family protein K09933 mtfA; MtfA peptidase
D CH54_368 trypsin family protein K04775 ydgD; protease YdgD [EC:3.4.21.-]
D CH54_1712 peptidase Do family protein K04771 degP; serine protease Do [EC:3.4.21.107]
D CH54_3026 peptidase Do family protein K04772 degQ; serine protease DegQ [EC:3.4.21.-]
D CH54_3025 degS; periplasmic serine peptidase DegS K04691 hhoB; serine protease DegS [EC:3.4.21.-]
D CH54_175 prolyl oligopeptidase family protein K01354 ptrB; oligopeptidase B [EC:3.4.21.83]
D CH54_4035 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D CH54_1217 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D CH54_1084 D-alanyl-D-alanine carboxypeptidase family protein K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D CH54_3977 beta-lactamase family protein K18988 ampH; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase [EC:3.4.16.4 3.4.21.-]
D CH54_1990 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D CH54_3686 clpP; ATP-dependent Clp endopeptidase, proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D CH54_3688 lon; endopeptidase La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D CH54_10 hypothetical protein K04770 lonH; Lon-like ATP-dependent protease [EC:3.4.21.-]
D CH54_2928 lexA; repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D CH54_1500 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D CH54_177 pip; prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D CH54_217 hypothetical protein K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D CH54_711 penicillin amidase family protein K01434 pac; penicillin G amidase [EC:3.5.1.11]
D CH54_572 sppA; signal peptide peptidase SppA, 67K type K04773 sppA; protease IV [EC:3.4.21.-]
D CH54_499 serine dehydrogenase ase family protein K04774 sohB; serine protease SohB [EC:3.4.21.-]
D CH54_2338 glpG; rhomboid family protease GlpG K02441 glpG; rhomboid protease GlpG [EC:3.4.21.105]
D CH54_2686 hslV; ATP-dependent protease HslVU, peptidase subunit K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D CH54_3650 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D CH54_1374 peptidase U32 family protein K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D CH54_1970 peptidase U32 family protein K24845 ubiV; O2-independent ubiquinone biosynthesis protein UbiV
D CH54_1969 peptidase U32 family protein K24844 ubiU; O2-independent ubiquinone biosynthesis protein UbiU
D CH54_2986 modulator of DNA gyrase family protein K03592 pmbA; PmbA protein
D CH54_2977 modulator of DNA gyrase family protein K03568 tldD; TldD protein
D CH54_3960 ecotin family protein K08276 eco; ecotin
D CH54_1456 alpha-2-macroglobulin family protein K06894 yfhM; alpha-2-macroglobulin
D CH54_2035 hflC; HflC protein K04087 hflC; modulator of FtsH protease HflC
D CH54_2036 hflK; HflK protein K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:ykr01003]
D CH54_2344 glgA; glycogen/starch synthase, ADP-glucose type family protein K00703 glgA; starch synthase [EC:2.4.1.21]
D CH54_2408 bcsA; cellulose synthase catalytic subunit K00694 bcsA; cellulose synthase (UDP-forming) [EC:2.4.1.12]
D CH54_3039 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D CH54_1455 pbpC; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D CH54_1724 mrcB; penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D CH54_2312 penicillin-binding, 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D CH54_2761 glycosyltransferase, WecB/TagA/CpsF family protein K02852 wecG; UDP-N-acetyl-D-mannosaminouronate:lipid I N-acetyl-D-mannosaminouronosyltransferase [EC:2.4.1.180]
D CH54_2759 4-alpha-L-fucosyltransferase glycosyl transferase group 56 family protein K12582 wecF; dTDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase [EC:2.4.1.325]
D CH54_2750 wecA; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D CH54_51 glycosyl transferase 21 family protein K03669 mdoH; membrane glycosyltransferase [EC:2.4.1.-]
D CH54_3626 glycosyltransferase 36 associated family protein K13688 chvB; cyclic beta-1,2-glucan glucanotransferase [EC:2.4.1.397]
D CH54_694 pgaC; poly-beta-1,6 N-acetyl-D-glucosamine synthase K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:ykr01005]
D CH54_593 lpxA; acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D CH54_3532 lpxA; acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D CH54_3533 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D CH54_1773 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D CH54_3530 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D CH54_3759 lpxH; UDP-2,3-diacylglucosamine diphosphatase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D CH54_4100 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D CH54_59 lpxL; lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase family protein K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D CH54_615 msbB; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243]
D CH54_851 aspartyl/Asparaginyl beta-hydroxylase family protein K12979 lpxO; beta-hydroxylase [EC:1.14.11.-]
D CH54_2951 lpxL; lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase family protein K12974 lpxP; KDO2-lipid IV(A) palmitoleoyltransferase [EC:2.3.1.242]
D CH54_2651 glycosyl transferases group 1 family protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D CH54_268 dolichyl-phosphate-mannose-mannosyltransferase family protein K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43]
D CH54_151 antimicrobial peptide resistance and lipid A acylation PagP family protein K12973 pagP; lipid IVA palmitoyltransferase [EC:2.3.1.251]
D CH54_309 hypothetical protein K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D CH54_2427 hypothetical protein K12975 eptB; KDO II ethanolaminephosphotransferase [EC:2.7.8.42]
D CH54_651 kdsA; 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D CH54_4104 kdsB; 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D CH54_3015 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family protein K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D CH54_3016 sugar isomerase, KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D CH54_2652 waaC; lipopolysaccharide heptosyltransferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D CH54_2650 glycosyltransferase like 2 family protein K12984 waaE; (heptosyl)LPS beta-1,4-glucosyltransferase [EC:2.4.1.-]
D CH54_2653 waaF; lipopolysaccharide heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D CH54_121 O-Antigen ligase family protein K02847 waaL; O-antigen ligase [EC:2.4.99.26]
D CH54_1900 rfaQ; putative lipopolysaccharide heptosyltransferase III K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
D CH54_3580 gmhA; phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D CH54_3554 gmhB; D,D-heptose 1,7-bisphosphate phosphatase family protein K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D CH54_3114 rfaE1; bifunctional protein RfaE, domain I K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D CH54_2654 rfaD; ADP-glyceromanno-heptose 6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D CH54_3738 glycosyl transferase 4 family protein K13007 wbpL; glycosyltransferase WbpL [EC:2.4.1.-]
D CH54_2760 wzyE family protein K02853 wzyE; enterobacterial common antigen polymerase [EC:2.4.99.27]
D CH54_737 glycosyl transferase 2 family protein K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-]
D CH54_2750 wecA; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:ykr01011]
D CH54_3024 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D CH54_2862 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D CH54_1778 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D CH54_1781 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D CH54_1784 murE; UDP-N-acetylmuramyl-tripeptide synthetase family protein K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D CH54_1777 D-alanine--D-alanine ligase family protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D CH54_3593 D-alanine--D-alanine ligase family protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D CH54_587 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D CH54_2936 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D CH54_2716 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D CH54_1782 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D CH54_1779 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D CH54_3109 uppP; undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D CH54_4040 PAP2 superfamily protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D CH54_636 mviN; murein biosynthesis integral membrane protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase
D CH54_2312 penicillin-binding, 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D CH54_1724 mrcB; penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D CH54_1455 pbpC; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D CH54_1214 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D CH54_154 penicillin binding transpeptidase domain protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D CH54_1785 penicillin binding transpeptidase domain protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D CH54_4035 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D CH54_1217 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D CH54_1990 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D CH54_3977 beta-lactamase family protein K18988 ampH; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase [EC:3.4.16.4 3.4.21.-]
D CH54_1084 D-alanyl-D-alanine carboxypeptidase family protein K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D CH54_3039 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D CH54_289 L,D-transpeptidase catalytic domain protein K19236 ycfS; L,D-transpeptidase YcfS
D CH54_4111 L,D-transpeptidase catalytic domain protein K21470 ycbB; L,D-transpeptidase YcbB
D CH54_3864 penicillin-insensitive murein endopeptidase family protein K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-]
D CH54_303 nlpC/P60 family protein K19303 mepH; murein DD-endopeptidase [EC:3.4.-.-]
D CH54_4001 nlpC/P60 family protein K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]
D CH54_616 lysM domain protein K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-]
D CH54_2613 D-alanyl-D-alanine carboxypeptidase family protein K17733 cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]
D CH54_1855 soluble lytic murein transglycosylase L domain protein K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D CH54_3501 mltA specific insert domain protein K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29]
D CH54_597 lytic murein transglycosylase family protein K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D CH54_1250 mltB; lytic murein transglycosylase B K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D CH54_3359 hypothetical protein K08306 mltC; peptidoglycan lytic transglycosylase C [EC:4.2.2.29]
D CH54_1589 lysM domain protein K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D CH54_242 transglycosylase SLT domain protein K08308 mltE; peptidoglycan lytic transglycosylase E [EC:4.2.2.29]
D CH54_1485 bacterial extracellular solute-binding s, 3 family protein K18691 mltF; peptidoglycan lytic transglycosylase F [EC:4.2.2.29]
D CH54_82 yceG-like family protein K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D CH54_1216 rlpA; rare lipoA family protein K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D CH54_3497 N-acetylmuramoyl-L-alanine amidase family protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CH54_2041 N-acetylmuramoyl-L-alanine amidase family protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CH54_223 N-acetylmuramoyl-L-alanine amidase family protein K11066 amiD; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CH54_1760 N-acetylmuramoyl-L-alanine amidase family protein K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28]
D CH54_290 lipoleucine-zipper family protein K06078 lpp; murein lipoprotein
C 01004 Lipid biosynthesis proteins [BR:ykr01004]
D CH54_77 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D CH54_76 fabH; 3-oxoacyl-[acyl-carrier-] synthase III family protein K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D CH54_3869 hypothetical protein K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D CH54_7 fabF; beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D CH54_80 fabF; beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D CH54_1661 hypothetical protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D CH54_387 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CH54_78 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CH54_1658 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CH54_9 fabA; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D CH54_3531 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D CH54_2502 NAD(P)H binding domain of trans-2-enoyl-CoA reductase family protein K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D CH54_3754 GDSL-like Lipase/Acylhydrolase family protein K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D CH54_3703 tesB; acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D CH54_536 thioesterase superfamily protein K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
D CH54_3693 acyl-CoA thioester hydrolase, YbgC/YbaW family protein K12500 tesC; thioesterase III [EC:3.1.2.-]
D CH54_2204 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D CH54_604 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D CH54_1793 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D CH54_2926 plsB; glycerol-3-phosphate O-acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D CH54_75 plsX; fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D CH54_3107 plsY; acyl-phosphate glycerol 3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D CH54_3131 1-acylglycerol-3-phosphate O-acyltransferases domain protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins [BR:ykr01008]
D CH54_3163 mbtH-like family protein K05375 mbtH; MbtH protein
D CH54_3173 isochorismatase family protein K01252 entB; bifunctional isochorismate lyase / aryl carrier protein [EC:3.3.2.1 6.3.2.14]
D CH54_853 4'-phosphopantetheinyl transferase superfamily protein K02362 entD; enterobactin synthetase component D [EC:6.3.2.14 2.7.8.-]
D CH54_891 4'-phosphopantetheinyl transferase superfamily protein K02362 entD; enterobactin synthetase component D [EC:6.3.2.14 2.7.8.-]
D CH54_3172 (2,3-dihydroxybenzoyl)adenylate synthase K02363 entE; 2,3-dihydroxybenzoate---[aryl-carrier protein] ligase [EC:6.3.2.14 6.2.1.71]
D CH54_888 amino acid adenylation domain protein K12240 pchF; L-cysteine---[L-cysteinyl-carrier protein] ligase PchF [EC:6.2.1.69]
D CH54_3164 amino acid adenylation domain protein K24101 vabF; L-arginine---[L-arginyl-carrier protein] ligase [EC:6.2.1.63]
D CH54_886 thiazolinyl imide reductase family protein K12241 pchG; pyochelin biosynthesis protein PchG
D CH54_885 thioesterase domain protein K12242 pchC; pyochelin biosynthesis protein PchC
C 01006 Prenyltransferases [BR:ykr01006]
D CH54_3669 polyprenyl synthetase family protein K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D CH54_1997 polyprenyl synthetase family protein K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D CH54_3525 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D CH54_2039 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D CH54_2684 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D CH54_2925 ubiA; 4-hydroxybenzoate polyprenyl transferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D CH54_3676 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
C 01007 Amino acid related enzymes [BR:ykr01007]
D CH54_1284 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CH54_1182 glnS; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D CH54_1729 gluQ; glutamyl-queuosine tRNA(Asp) synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D CH54_322 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CH54_2300 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D CH54_3761 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D CH54_635 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D CH54_995 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D CH54_1832 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D CH54_1933 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D CH54_1208 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D CH54_3423 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D CH54_627 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D CH54_4117 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D CH54_1448 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D CH54_2472 glyQ; glycine--tRNA ligase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D CH54_2471 glyS; glycine--tRNA ligase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D CH54_4084 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D CH54_3548 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D CH54_252 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D CH54_1627 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D CH54_256 pheS; phenylalanine--tRNA ligase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D CH54_257 pheT; phenylalanine--tRNA ligase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D CH54_4115 aminotransferase class I and II family protein K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D CH54_2483 aminotransferase class I and II family protein K00835 avtA; valine--pyruvate aminotransferase [EC:2.6.1.66]
D CH54_3923 aminotransferase class I and II family protein K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D CH54_1266 aminotransferase class I and II family protein K14261 alaC; alanine-synthesizing transaminase [EC:2.6.1.-]
D CH54_2937 aminotransferase class I and II family protein K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D CH54_3573 cys/Met metabolism PLP-dependent enzyme family protein K14287 ybdL; methionine transaminase [EC:2.6.1.88]
D CH54_424 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CH54_980 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CH54_2655 kbl; glycine C-acetyltransferase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D CH54_1106 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D CH54_448 C-S lyase family protein K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D CH54_2286 astC; succinylornithine transaminase family protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D CH54_681 astC; succinylornithine transaminase family protein K00840 astC; succinylornithine aminotransferase [EC:2.6.1.81]
D CH54_1108 bioA; adenosylmethionine-8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D CH54_1720 hemL; glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D CH54_2729 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D CH54_4092 serC; phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D CH54_264 beta-eliminating lyase family protein K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87]
D CH54_2757 wecE; TDP-4-keto-6-deoxy-D-glucose transaminase family protein K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:ykr00194]
D CH54_2525 atpC; ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D CH54_2526 atpD; ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D CH54_2527 atpG; ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D CH54_2528 atpA; ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D CH54_2529 atpH; ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D CH54_2530 atpF; ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D CH54_2531 atpE; ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D CH54_2532 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D CH54_2533 ATP synthase I chain family protein K02116 atpI; ATP synthase protein I
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:ykr03000]
D CH54_3053 dcm; DNA (cytosine-5-)-methyltransferase family protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D CH54_452 helix-turn-helix domain protein K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D CH54_1538 helix-turn-helix domain protein K03490 chbR; AraC family transcriptional regulator, dual regulator of chb operon
D CH54_1852 helix-turn-helix domain protein K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D CH54_938 helix-turn-helix domain protein K27259 pocR; AraC family transcriptional regulator, pdu and cob operon regulator
D CH54_2666 methylated-DNA--[]-cysteine S-methyltransferase family protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D CH54_1566 helix-turn-helix domain protein K13633 ftrA; AraC family transcriptional regulator, transcriptional activator FtrA
D CH54_3506 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D CH54_2732 bacterial regulatory helix-turn-helix, lysR family protein K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D CH54_2831 bacterial regulatory helix-turn-helix, lysR family protein K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D CH54_1835 bacterial regulatory helix-turn-helix, lysR family protein K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D CH54_2711 bacterial regulatory helix-turn-helix, lysR family protein K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D CH54_3397 argP; transcriptional regulator, ArgP family protein K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D CH54_1794 bacterial regulatory helix-turn-helix, lysR family protein K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon
D CH54_496 bacterial regulatory helix-turn-helix, lysR family protein K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D CH54_687 bacterial regulatory helix-turn-helix, lysR family protein K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator
D CH54_2978 bacterial regulatory helix-turn-helix, lysR family protein K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon
D CH54_2724 bacterial regulatory helix-turn-helix, lysR family protein K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
D CH54_4038 deoR-like helix-turn-helix domain protein K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor
D CH54_2339 deoR-like helix-turn-helix domain protein K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D CH54_1381 deoR-like helix-turn-helix domain protein K02468 srlR; DeoR family transcriptional regulator, glucitol operon repressor
D CH54_907 deoR-like helix-turn-helix domain protein K22103 glcR; DeoR family transcriptional regulator, carbon catabolite repression regulator
D CH54_824 bacterial regulatory s, lacI family protein K27069 lacI; LacI family transcriptional regulator, lactose operon repressor
D CH54_1026 bacterial regulatory s, lacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D CH54_2440 helix-turn-helix domain protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D CH54_2549 bacterial regulatory s, lacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D CH54_3303 bacterial regulatory s, lacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D CH54_3477 bacterial regulatory s, lacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D CH54_2688 bacterial regulatory s, lacI family protein K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D CH54_1790 D-fructose-responsive transcription factor family protein K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D CH54_3000 treR; trehalose operon repressor K03485 treR; LacI family transcriptional regulator, trehalose operon repressor
D CH54_1239 helix-turn-helix family protein K03487 ascG; LacI family transcriptional regulator, asc operon repressor
D CH54_300 bacterial regulatory s, lacI family protein K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D CH54_2360 bacterial regulatory s, lacI family protein K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D CH54_3943 bacterial regulatory s, lacI family protein K06146 idnR; LacI family transcriptional regulator, gluconate utilization system Gnt-II transcriptional activator
D CH54_445 bacterial regulatory s, lacI family protein K16136 malI; LacI family transcriptional regulator, maltose regulon regulatory protein
D CH54_3622 UTRA domain protein K03482 yidP; GntR family transcriptional regulator, glv operon transcriptional regulator
D CH54_1945 phnF; phosphonate metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D CH54_673 hutC; histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D CH54_590 fadR; fatty acid metabolism transcriptional regulator FadR K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D CH54_1757 bacterial regulatory s, gntR family protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D CH54_4004 bacterial regulatory s, gntR family protein K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor
D CH54_3076 bacterial regulatory s, gntR family protein K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor
D CH54_1575 aminotransferase class I and II family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D CH54_3721 bacterial regulatory s, tetR family protein K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D CH54_2642 bacterial regulatory s, tetR family protein K05501 slmA; TetR/AcrR family transcriptional regulator
D CH54_308 bacterial regulatory s, tetR family protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D CH54_2712 bacterial regulatory s, tetR family protein K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D CH54_1090 bacterial regulatory s, tetR family protein K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
D CH54_2537 asnC-type helix-turn-helix domain protein K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D CH54_4080 asnC-type helix-turn-helix domain protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D CH54_828 asnC-type helix-turn-helix domain protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D CH54_404 asnC-type helix-turn-helix domain protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D CH54_3444 asnC-type helix-turn-helix domain protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D CH54_3698 asnC-type helix-turn-helix domain protein K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D CH54_1490 bacterial regulatory s, luxR family protein K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR
D CH54_2336 bacterial regulatory s, luxR family protein K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
D CH54_317 winged helix DNA-binding domain protein K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D CH54_3568 winged helix DNA-binding domain protein K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB
D CH54_3749 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D CH54_2225 zntR; Zn(II)-responsive transcriptional regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
D CH54_1178 ferric uptake regulator family protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D CH54_2930 ferric uptake regulator family protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D CH54_2908 iclR helix-turn-helix domain protein K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D CH54_222 iclR helix-turn-helix domain protein K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D CH54_2284 bacterial regulatory s, crp family protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D CH54_380 bacterial regulatory s, crp family protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D CH54_1468 iscR; iron-sulfur cluster assembly transcription factor IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D CH54_2032 Rrf2 family protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D CH54_420 bacterial regulatory, arsR family protein K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D CH54_3097 SIS domain protein K15835 murR; RpiR family transcriptional regulator, murPQ operon repressor
D CH54_613 SIS domain protein K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D CH54_2863 biotin operon repressor K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D CH54_2958 bacterial regulatory, Fis family protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D CH54_1854 trpR; trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D CH54_2572 winged helix-turn-helix DNA-binding family protein K07724 ner; Ner family transcriptional regulator
D CH54_746 winged helix-turn-helix DNA-binding family protein K07724 ner; Ner family transcriptional regulator
D CH54_1999 winged helix-turn-helix DNA-binding family protein K07724 ner; Ner family transcriptional regulator
D CH54_1805 bacterial extracellular solute-binding s, 5 Middle family protein K11925 sgrR; SgrR family transcriptional regulator
D CH54_92 bacterial extracellular solute-binding s, 5 Middle family protein K11925 sgrR; SgrR family transcriptional regulator
D CH54_1860 nicotinamide-nucleotide adenylyltransferase K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D CH54_2943 helix-turn-helix family protein K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D CH54_2453 helix-turn-helix family protein K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D CH54_408 AAA domain family protein K12266 norR; anaerobic nitric oxide reductase transcription regulator
D CH54_1021 AAA domain family protein K15836 fhlA; formate hydrogenlyase transcriptional activator
D CH54_2076 sugar diacid recognition family protein K02647 cdaR; carbohydrate diacid regulator
D CH54_1115 molybdenum-pterin binding domain protein K02019 modE; molybdate transport system regulatory protein
D CH54_2489 HTH domain protein K21829 dauR; D-arginine utilization repressor
D CH54_4032 helix-turn-helix family protein K07726 K07726; putative transcriptional regulator
D CH54_2691 met Apo-repressor, MetJ family protein K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D CH54_754 delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D CH54_186 addiction module antitoxin, RelB/DinJ family protein K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
D CH54_3684 bolA-like family protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D CH54_2848 rfaH; transcription elongation factor/antiterminator RfaH K05785 rfaH; transcriptional antiterminator RfaH
D CH54_2001 argR; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D CH54_1186 marR family protein K02565 nagC; N-acetylglucosamine repressor
D CH54_434 ROK family protein K15545 mlc; transcriptional regulator of PTS gene
D CH54_2466 mannitol repressor family protein K02562 mtlR; mannitol operon repressor
D CH54_347 TyrR family helix-turn-helix domain protein K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D CH54_1346 ACT domain protein K03567 gcvR; glycine cleavage system transcriptional repressor
D CH54_338 pspF; psp operon transcriptional activator K03974 pspF; psp operon transcriptional activator
D CH54_341 pspC; phage shock protein C K03973 pspC; phage shock protein C
D CH54_1902 putative sugar-binding domain protein K11531 lsrR; lsr operon transcriptional repressor
D CH54_1884 PAS fold family protein K05880 dhaR; transcriptional activator for dhaKLM operon
D CH54_2988 hypothetical protein K06140 rnk; regulator of nucleoside diphosphate kinase
D CH54_1527 prophage CP4-57 regulatory family protein K07733 alpA; prophage regulatory protein
D CH54_1433 prophage CP4-57 regulatory family protein K07733 alpA; prophage regulatory protein
D CH54_3440 prophage CP4-57 regulatory family protein K07733 alpA; prophage regulatory protein
D CH54_3376 hypothetical protein K07735 algH; putative transcriptional regulator
D CH54_1728 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D CH54_3662 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D CH54_3615 transcriptional regulator Crl family protein K11926 crl; sigma factor-binding protein Crl
D CH54_1788 mraZ family protein K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:ykr03021]
D CH54_2228 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D CH54_2880 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D CH54_2881 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D CH54_2581 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D CH54_3102 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D CH54_1680 rpoS; RNA polymerase sigma factor RpoS K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
D CH54_1506 rpoE; RNA polymerase sigma factor RpoE K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D CH54_1048 RNA polymerase sigma factor, sigma-70 family protein K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D CH54_2811 rpoH; alternative sigma factor RpoH K03089 rpoH; RNA polymerase sigma-32 factor
D CH54_3011 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D CH54_763 RNA polymerase sigma factor, FliA/WhiG family protein K02405 fliA; RNA polymerase sigma factor FliA
D CH54_3215 RNA polymerase sigma factor, FliA/WhiG family protein K02405 fliA; RNA polymerase sigma factor FliA
D CH54_1811 DEAD/DEAH box helicase family protein K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-]
D CH54_1979 nusA; Transcription elongation factor K02600 nusA; transcription termination/antitermination protein NusA
D CH54_3665 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D CH54_2875 nusG; Transcription antiterminator K02601 nusG; transcription termination/antitermination protein NusG
D CH54_3031 hypothetical protein K03599 sspA; stringent starvation protein A
D CH54_3032 stringent starvation B family protein K03600 sspB; stringent starvation protein B
D CH54_1505 hypothetical protein K03597 rseA; sigma-E factor negative regulatory protein RseA
D CH54_1504 mucB/RseB family protein K03598 rseB; sigma-E factor negative regulatory protein RseB
D CH54_1503 positive regulator of sigma(E), RseC/MucC family protein K03803 rseC; sigma-E factor negative regulatory protein RseC
D CH54_1728 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D CH54_1989 greA; transcription elongation factor GreA domain protein K03624 greA; transcription elongation factor GreA
D CH54_2321 greB; transcription elongation factor GreB K04760 greB; transcription elongation factor GreB
D CH54_2749 rho; Transcription termination factor K03628 rho; transcription termination factor Rho
D CH54_3543 hypothetical protein K19000 rof; Rho-binding antiterminator
C 03019 Messenger RNA biogenesis [BR:ykr03019]
D CH54_70 ribonuclease, Rne/Rng family domain protein K08300 rne; ribonuclease E [EC:3.1.26.12]
D CH54_2974 ribonuclease, Rne/Rng family domain protein K08301 rng; ribonuclease G [EC:3.1.26.-]
D CH54_1499 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D CH54_2031 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D CH54_2048 exonuclease family protein K13288 orn; oligoribonuclease [EC:3.1.-.-]
D CH54_2747 DEAD/DEAH box helicase family protein K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D CH54_1089 hypothetical protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D CH54_1972 DEAD/DEAH box helicase family protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D CH54_2789 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D CH54_1707 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D CH54_1974 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D CH54_2749 rho; Transcription termination factor K03628 rho; transcription termination factor Rho
D CH54_2671 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D CH54_1838 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D CH54_2063 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CH54_2038 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein
D CH54_1361 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D CH54_1730 pcnB; poly(A) polymerase family protein K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D CH54_3484 NUDIX domain protein K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D CH54_1626 csrA; carbon storage regulator K03563 csrA; carbon storage regulator
D CH54_2969 EAL domain protein K18765 csrD; RNase E specificity factor CsrD
D CH54_2683 rraA; regulator of ribonuclease activity A K02553 rraA; regulator of ribonuclease activity A
D CH54_1935 regulator of ribonuclease activity B family protein K09893 rraB; regulator of ribonuclease activity B
D CH54_3008 P-loop ATPase family protein K06958 rapZ; RNase adapter protein RapZ
D CH54_365 hrpA; RNA helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
D CH54_1725 hrpB; ATP-dependent helicase HrpB K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6]
C 03041 Spliceosome
C 03011 Ribosome [BR:ykr03011]
D CH54_4095 rpsA; ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D CH54_3520 rpsB; ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D CH54_2247 rpsC; ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D CH54_2229 rpsD; ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D CH54_2236 rpsE; ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D CH54_2025 rpsF; ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D CH54_2259 rpsG; ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D CH54_2239 ribosomal S8 family protein K02994 RP-S8; small subunit ribosomal protein S8
D CH54_3030 ribosomal S9/S16 family protein K02996 RP-S9; small subunit ribosomal protein S9
D CH54_2254 rpsJ; ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D CH54_2230 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D CH54_2260 rpsL; ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D CH54_2231 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D CH54_2240 ribosomal S14p/S29e family protein K02954 RP-S14; small subunit ribosomal protein S14
D CH54_1975 rpsO; ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D CH54_1614 rpsP; ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D CH54_2244 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D CH54_2023 rpsR; ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D CH54_2249 rpsS; ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D CH54_1834 rpsT; ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D CH54_3104 rpsU; ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D CH54_2877 rplA; ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D CH54_2250 rplB; ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D CH54_2253 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D CH54_2252 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D CH54_2241 ribosomal L5 family protein K02931 RP-L5; large subunit ribosomal protein L5
D CH54_2238 rplF; ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D CH54_2022 rplI; ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D CH54_2878 ribosomal L10 family protein K02864 RP-L10; large subunit ribosomal protein L10
D CH54_2876 rplK; ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D CH54_2879 rplL; ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D CH54_3029 rplM; ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D CH54_2243 rplN; ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D CH54_2234 rplO; ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D CH54_2246 rplP; ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D CH54_2227 rplQ; ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D CH54_2237 rplR; ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D CH54_1611 rplS; ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D CH54_255 rplT; ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D CH54_1996 rplU; ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D CH54_2248 rplV; ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D CH54_2251 ribosomal L23 family protein K02892 RP-L23; large subunit ribosomal protein L23
D CH54_2242 rplX; ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D CH54_1995 rpmA; ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D CH54_2646 rpmB; ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D CH54_2245 rpmC; ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D CH54_2235 rpmD; ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D CH54_2690 rpmE; ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D CH54_3713 rpmE; ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D CH54_74 rpmF; ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D CH54_2647 rpmG; ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D CH54_2497 rpmH; ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D CH54_254 rpmI; ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D CH54_3712 rpmJ; ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D CH54_2232 rpmJ; ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D CH54_3991 ribosomal L25p family protein K02897 RP-L25; large subunit ribosomal protein L25
D CH54_2554 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CH54_2861 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CH54_2901 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CH54_2721 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CH54_3559 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CH54_1596 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CH54_2207 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CH54_2903 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CH54_2211 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CH54_2551 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CH54_2717 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CH54_2898 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CH54_2858 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CH54_1599 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CH54_3555 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CH54_2208 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CH54_1597 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CH54_3558 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CH54_2860 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CH54_2720 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CH54_2553 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CH54_2900 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:ykr03009]
D CH54_1499 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D CH54_137 RIO1 family protein K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D CH54_2048 exonuclease family protein K13288 orn; oligoribonuclease [EC:3.1.-.-]
D CH54_1498 era; GTP-binding protein Era K03595 era; GTPase
D CH54_1993 cgtA; Obg family GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-]
D CH54_1728 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D CH54_1979 nusA; Transcription elongation factor K02600 nusA; transcription termination/antitermination protein NusA
D CH54_3665 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D CH54_2875 nusG; Transcription antiterminator K02601 nusG; transcription termination/antitermination protein NusG
D CH54_3993 pseudouridine synthase family protein K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D CH54_1817 rsmA; ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D CH54_2221 rsmB; 16S rRNA (cytosine(967)-C(5))-methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D CH54_1877 methyltransferase small domain protein K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D CH54_2807 rsmD; 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D CH54_3378 RNA methyltransferase, RsmE family protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D CH54_2534 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D CH54_1787 rsmH; 16S rRNA (cytosine(1402)-N(4))-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D CH54_3044 rsmI; 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D CH54_2389 SAM-dependent methyltransferase family protein K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
D CH54_155 ubiE/COQ5 methyltransferase family protein K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D CH54_2030 RNA 2'-O ribose methyltransferase substrate binding family protein K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D CH54_1987 rrmJ; ribosomal RNA large subunit methyltransferase J K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D CH54_1056 hypothetical protein K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181]
D CH54_3087 methyltransferase small domain protein K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174]
D CH54_1213 rlmH; rRNA large subunit m3Psi methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D CH54_23 met-10+ like-family protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D CH54_2391 hypothetical protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D CH54_3508 ftsJ-like methyltransferase family protein K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D CH54_1452 rlmN; 23S rRNA (adenine(2503)-C(2))-methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D CH54_4051 rumA; 23S rRNA (uracil-5-)-methyltransferase RumA K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189]
D CH54_1812 RNA pseudouridylate synthase family protein K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D CH54_850 RNA pseudouridylate synthase family protein K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D CH54_503 pseudouridine synthase family protein K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D CH54_71 pseudouridine synthase, RluA family protein K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D CH54_1602 pseudouridine synthase, RluA family protein K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D CH54_118 pseudouridine synthase family protein K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D CH54_189 pseudouridine synthase family protein K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
D CH54_3565 RNA 2'-O ribose methyltransferase substrate binding family protein K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
D CH54_1875 rimI; ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D CH54_639 acetyltransferase family protein K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
D CH54_1613 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
D CH54_4089 ycaO-type kinase domain protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
D CH54_2960 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D CH54_3862 prmB; (glutamine-N5) methyltransferase, ribosomal protein L3-specific K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
D CH54_110 cupin superfamily protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
D CH54_1232 cupin superfamily protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
D CH54_70 ribonuclease, Rne/Rng family domain protein K08300 rne; ribonuclease E [EC:3.1.26.12]
D CH54_2974 ribonuclease, Rne/Rng family domain protein K08301 rng; ribonuclease G [EC:3.1.26.-]
D CH54_3375 hypothetical protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D CH54_171 DEAD/DEAH box helicase family protein K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
D CH54_1972 DEAD/DEAH box helicase family protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D CH54_1509 DEAD/DEAH box helicase family protein K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7]
D CH54_2049 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D CH54_1445 engA; ribosome-associated GTPase EngA K03977 engA; GTPase
D CH54_2037 hflX; GTP-binding protein HflX K03665 hflX; GTPase
D CH54_2215 telomere recombination family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D CH54_2580 RelA/SpoT family protein K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D CH54_1977 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D CH54_1980 hypothetical protein K09748 rimP; ribosome maturation factor RimP
D CH54_3762 S4 domain protein K14761 rlbA; ribosome-associated protein
D CH54_1212 rsfS; ribosome silencing factor K09710 ybeB; ribosome-associated protein
D CH54_1198 putative rRNA maturation factor YbeY K07042 ybeY; probable rRNA maturation factor
D CH54_1988 CRS1 / YhbY domain protein K07574 yhbY; RNA-binding protein
D CH54_2464 hypothetical protein K14762 yibL; ribosome-associated protein
D CH54_2985 hypothetical protein K09889 yjgA; ribosome-associated protein
D CH54_6 ribosome modulation factor family protein K03812 rmf; ribosome modulation factor
D CH54_3010 raiA; ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor
D CH54_1604 raiA; ribosomal subunit interface protein K05809 raiA; ribosome-associated inhibitor A
D CH54_663 50S ribosome-binding GTPase family protein K06942 ychF; ribosome-binding ATPase
D CH54_73 hypothetical protein K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:ykr03016]
D CH54_3110 poly A polymerase head domain protein K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D CH54_1284 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CH54_3548 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D CH54_1832 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D CH54_1208 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D CH54_995 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D CH54_1182 glnS; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D CH54_635 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D CH54_3423 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D CH54_627 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D CH54_1627 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D CH54_4117 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D CH54_252 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D CH54_4084 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D CH54_3761 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D CH54_1933 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D CH54_1448 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D CH54_256 pheS; phenylalanine--tRNA ligase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D CH54_257 pheT; phenylalanine--tRNA ligase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D CH54_322 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CH54_2300 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D CH54_2570 dtd; D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D CH54_94 HIT domain protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D CH54_3362 trmB; tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D CH54_3549 tsaA; tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
D CH54_3890 truA; tRNA pseudouridine(38-40) synthase K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D CH54_1976 truB; tRNA pseudouridine(55) synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D CH54_1684 tRNA pseudouridine synthase, TruD family protein K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D CH54_1467 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CH54_2215 telomere recombination family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D CH54_2039 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D CH54_2501 trmE; tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D CH54_2535 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D CH54_570 selD; selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D CH54_2014 cysQ; 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D CH54_2498 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D CH54_305 rnt; ribonuclease T K03683 rnt; ribonuclease T [EC:3.1.13.-]
D CH54_2595 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D CH54_477 rnb; exoribonuclease II K01147 rnb; exoribonuclease II [EC:3.1.13.1]
D CH54_603 rnd; ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D CH54_1726 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D CH54_1857 ccmA; heme ABC exporter, ATP-binding protein CcmA K06020 ettA; energy-dependent translational throttle protein EttA
D CH54_2472 glyQ; glycine--tRNA ligase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D CH54_2471 glyS; glycine--tRNA ligase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D CH54_1729 gluQ; glutamyl-queuosine tRNA(Asp) synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D CH54_3746 aminoacyl-tRNA editing domain protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D CH54_1486 cytidine and deoxycytidylate deaminase zinc-binding region family protein K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D CH54_2931 dusA; tRNA dihydrouridine synthase A family protein K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D CH54_2959 TIM-barrel, nifR3 family protein K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D CH54_1088 dihydrouridine synthase family protein K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-]
D CH54_1196 miaB; tRNA-i(6)A37 thiotransferase enzyme MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D CH54_631 cmoA; tRNA (cmo5U34)-methyltransferase K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D CH54_632 cmoB; tRNA (mo5U34)-methyltransferase K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-]
D CH54_4107 methyltransferase small domain protein K06219 smtA; tRNA 5-carboxymethoxyuridine methyltransferase [EC:2.1.1.-]
D CH54_2714 trmA; tRNA (uracil(54)-C(5))-methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
D CH54_1612 trmD; tRNA (guanine(37)-N(1))-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D CH54_3565 RNA 2'-O ribose methyltransferase substrate binding family protein K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
D CH54_2579 spoU rRNA Methylase family protein K00556 trmH; tRNA (guanosine-2'-O-)-methyltransferase [EC:2.1.1.34]
D CH54_1469 RNA methyltransferase, TrmH, group 1 family protein K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
D CH54_2665 trmL; tRNA (cytidine(34)-2'-O)-methyltransferase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D CH54_1508 methyltransferase small domain protein K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223]
D CH54_3514 RNA pseudouridylate synthase family protein K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26]
D CH54_1812 RNA pseudouridylate synthase family protein K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D CH54_850 RNA pseudouridylate synthase family protein K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D CH54_116 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D CH54_354 PP-loop family protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D CH54_2801 sulfurtransferase TusA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D CH54_2261 dsrH; sulfur relay protein TusB/DsrH K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D CH54_2262 tusC; sulfur relay protein TusC/DsrF K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D CH54_2263 dsrE/DsrF-like family protein K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D CH54_26 tusE; sulfur relay, TusE/DsrC/DsvC family protein K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D CH54_1465 iscA; iron-sulfur cluster assembly protein IscA K13628 iscA; iron-sulfur cluster assembly protein
D CH54_3412 aminomethyltransferase folate-binding domain protein K06980 ygfZ; tRNA-modifying protein YgfZ
D CH54_3868 mnmC; tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
D CH54_3653 queA; tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D CH54_3694 queC; queuosine biosynthesis protein QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D CH54_1700 queD; queuosine biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D CH54_1701 putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D CH54_3511 queF; queuine synthase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D CH54_2044 queG; epoxyqueuosine reductase K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D CH54_3657 tgt; tRNA-guanine transglycosylase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D CH54_3671 thiI; tRNA sulfurtransferase ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D CH54_3541 tilS; tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D CH54_1340 acetyltransferase family protein K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193]
D CH54_606 yeaZ; tRNA threonylcarbamoyl adenosine modification protein YeaZ K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D CH54_3106 tsaD; tRNA threonylcarbamoyl adenosine modification protein TsaD K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D CH54_2042 tRNA threonylcarbamoyl adenosine modification protein YjeE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D CH54_3503 thiF family protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D CH54_2031 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D CH54_1974 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:ykr03012]
D CH54_485 translation initiation factor SUI1 family protein K03113 EIF1; translation initiation factor 1
D CH54_1978 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D CH54_253 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D CH54_2271 miro-like family protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D CH54_3521 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts
D CH54_2873 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D CH54_2257 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D CH54_1654 fusA; translation elongation factor G K02355 fusA; elongation factor G
D CH54_2258 fusA; translation elongation factor G K02355 fusA; elongation factor G
D CH54_2454 selB; selenocysteine-specific translation elongation factor K03833 selB; selenocysteine-specific elongation factor
D CH54_655 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D CH54_3523 frr; ribosome recycling factor K02838 frr; ribosome recycling factor
D CH54_654 prmC; protein-(glutamine-N5) methyltransferase, release factor-specific K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D CH54_661 pth; aminoacyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D CH54_4073 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D CH54_4007 elongation factor P (EF-P) OB domain protein K02356 efp; elongation factor P
D CH54_2060 efp; translation elongation factor P K02356 efp; elongation factor P
D CH54_2052 EF-P lysine aminoacylase GenX K04568 epmA; elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-]
D CH54_2061 epmB; EF-P beta-lysylation protein EpmB K19810 epmB; L-lysine 2,3-aminomutase [EC:5.4.3.-]
D CH54_3866 hypothetical protein K09906 epmC; elongation factor P hydroxylase [EC:1.14.-.-]
D CH54_3422 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
D CH54_1874 prfC; peptide chain release factor 3 K02837 prfC; peptide chain release factor 3
D CH54_2224 hypothetical protein K09890 arfA; alternative ribosome-rescue factor
D CH54_3546 RF-1 domain protein K15034 yaeJ; ribosome-associated protein
C 03110 Chaperones and folding catalysts [BR:ykr03110]
D CH54_4072 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
D CH54_1600 clpB; ATP-dependent chaperone protein ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D CH54_3687 clpX; ATP-dependent Clp protease, ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D CH54_2685 hslU; ATP-dependent protease HslVU, ATPase subunit K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D CH54_3730 hsp90 family protein K04079 HSP90A; molecular chaperone HtpG
D CH54_1838 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D CH54_1462 hscA; Fe-S protein assembly chaperone HscA K04044 hscA; molecular chaperone HscA
D CH54_1366 hsp70 family protein K04046 yegD; hypothetical chaperone protein
D CH54_2063 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CH54_1837 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D CH54_3449 dnaJ domain protein K05516 cbpA; curved DNA-binding protein
D CH54_1813 dnaJ domain protein K05801 djlA; DnaJ like chaperone protein
D CH54_1463 hscB; Fe-S protein assembly co-chaperone HscB K04082 hscB; molecular chaperone HscB
D CH54_2317 hsp33 family protein K04083 hslO; molecular chaperone Hsp33
D CH54_1512 grpE family protein K03687 GRPE; molecular chaperone GrpE
D CH54_2486 hsp20/alpha crystallin family protein K04080 ibpA; molecular chaperone IbpA
D CH54_2485 hsp20/alpha crystallin family protein K04081 ibpB; molecular chaperone IbpB
D CH54_2316 S4 domain protein K04762 hslR; ribosome-associated heat shock protein Hsp15
D CH54_2064 chaperonin 10 Kd subunit K04078 groES; chaperonin GroES
D CH54_1712 peptidase Do family protein K04771 degP; serine protease Do [EC:3.4.21.107]
D CH54_1986 hflB; ATP-dependent metallopeptidase HflB family protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D CH54_2532 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D CH54_2377 hypothetical protein K07346 fimC; fimbrial chaperone protein
D CH54_207 hypothetical protein K07346 fimC; fimbrial chaperone protein
D CH54_2742 hypothetical protein K07346 fimC; fimbrial chaperone protein
D CH54_2662 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D CH54_2669 LTXXQ motif family protein K06006 cpxP; periplasmic protein CpxP/Spy
D CH54_135 hdeA/HdeB family protein K19778 hdeB; acid stress chaperone HdeB
D CH54_1548 hdeA/HdeB family protein K19778 hdeB; acid stress chaperone HdeB
D CH54_1007 hypA; hydrogenase nickel insertion protein HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF
D CH54_3225 hypA; hydrogenase nickel insertion protein HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF
D CH54_3226 hypB; hydrogenase accessory protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB
D CH54_1632 nitrate reductase delta subunit K23349 dmsD; putative dimethyl sulfoxide reductase chaperone
D CH54_1259 nitrate reductase delta subunit K23349 dmsD; putative dimethyl sulfoxide reductase chaperone
D CH54_1179 glycosyl hydrolase family 20, catalytic domain protein K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D CH54_2290 cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD family protein K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D CH54_3760 cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD family protein K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D CH54_3691 PPIC-type PPIASE domain protein K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D CH54_2265 domain amino terminal to FKBP-type peptidyl-prolyl isomerase family protein K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D CH54_2019 domain amino terminal to FKBP-type peptidyl-prolyl isomerase family protein K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8]
D CH54_1830 FKBP-type peptidyl-prolyl cis-trans isomerase family protein K03774 slpA; FKBP-type peptidyl-prolyl cis-trans isomerase SlpA [EC:5.2.1.8]
D CH54_2267 FKBP-type peptidyl-prolyl cis-trans isomerase family protein K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D CH54_2744 PPIC-type PPIASE domain protein K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D CH54_1815 PPIC-type PPIASE domain protein K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D CH54_2748 trxA; thioredoxin K03671 TXN; thioredoxin
D CH54_3564 trxA; thioredoxin K03672 trxC; thioredoxin 2 [EC:1.8.1.8]
D CH54_3752 thioredoxin family protein K05838 ybbN; putative thioredoxin
D CH54_4043 grxA; glutaredoxin, GrxA family K03674 grxA; glutaredoxin 1
D CH54_2661 grxC; glutaredoxin 3 K03676 grxC; glutaredoxin 3
D CH54_304 grxD; monothiol glutaredoxin, Grx4 family K07390 grxD; monothiol glutaredoxin
D CH54_2559 DSBA-like thioredoxin domain protein K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D CH54_1667 DSBA-like thioredoxin domain protein K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D CH54_592 disulfide bond formation DsbB family protein K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9]
D CH54_3420 DSBA-like thioredoxin domain protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D CH54_2069 cytochrome C biogenesis transmembrane region family protein K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16]
D CH54_42 dsbE; periplasmic thiol:disulfide oxidoreductase, DsbE subfamily protein K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
D CH54_3852 dsbE; periplasmic thiol:disulfide oxidoreductase, DsbE subfamily protein K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
C 04131 Membrane trafficking [BR:ykr04131]
D CH54_1453 nucleoside diphosphate kinase family protein K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D CH54_127 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D CH54_577 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D CH54_1123 phosphoglycerate mutase 1 family protein K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D CH54_291 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D CH54_614 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D CH54_3730 hsp90 family protein K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system [BR:ykr04121]
C 03051 Proteasome [BR:ykr03051]
D CH54_3730 hsp90 family protein K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:ykr03032]
D CH54_1586 RNase H family protein K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D CH54_3053 dcm; DNA (cytosine-5-)-methyltransferase family protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D CH54_2893 bacterial DNA-binding family protein K05787 hupA; DNA-binding protein HU-alpha
D CH54_3689 bacterial DNA-binding family protein K03530 hupB; DNA-binding protein HU-beta
D CH54_258 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
D CH54_4096 ihfB; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta
D CH54_2496 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D CH54_3351 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D CH54_3793 hypothetical protein K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D CH54_2935 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D CH54_2156 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D CH54_3103 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D CH54_2940 ssb; single-stranded DNA-binding family protein K03111 ssb; single-strand DNA-binding protein
D CH54_3535 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D CH54_2495 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CH54_1932 DNA polymerase III chi subunit, HolC family protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D CH54_1210 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CH54_84 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D CH54_1585 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CH54_2630 exonuclease family protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CH54_3727 dnaX; DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CH54_1876 DNA polymerase III psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D CH54_178 DNA polymerase III, theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D CH54_3534 ribonuclease HII family protein K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D CH54_2560 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D CH54_1291 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D CH54_2583 NAD-dependent DNA ligase adenylation domain protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D CH54_438 tus; DNA replication terminus site-binding protein K10748 tus; DNA replication terminus site-binding protein
D CH54_2303 dam; DNA adenine methylase family protein K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D CH54_2629 dam; DNA adenine methylase family protein K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D CH54_1172 seqA family protein K03645 seqA; negative modulator of initiation of replication
D CH54_1351 hda; DnaA regulatory inactivator Hda K10763 hda; DnaA-homolog protein
D CH54_3965 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D CH54_2493 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D CH54_3130 parC; DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D CH54_3126 parE; DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D CH54_497 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D CH54_569 topB; DNA topoisomerase III family protein K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:ykr03036]
D CH54_3053 dcm; DNA (cytosine-5-)-methyltransferase family protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D CH54_1499 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D CH54_555 H-NS histone family protein K03746 hns; DNA-binding protein H-NS
D CH54_2893 bacterial DNA-binding family protein K05787 hupA; DNA-binding protein HU-alpha
D CH54_3689 bacterial DNA-binding family protein K03530 hupB; DNA-binding protein HU-beta
D CH54_258 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
D CH54_4096 ihfB; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta
D CH54_3449 dnaJ domain protein K05516 cbpA; curved DNA-binding protein
D CH54_3450 merR HTH regulatory family protein K18997 cbpM; chaperone modulatory protein CbpM
D CH54_1852 helix-turn-helix domain protein K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D CH54_2496 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D CH54_3041 SIS domain protein K12961 diaA; DnaA initiator-associating protein
D CH54_22 hemimethylated DNA binding domain protein K11940 hspQ; heat shock protein HspQ
D CH54_1051 ferritin-like domain protein K04047 dps; starvation-inducible DNA-binding protein
D CH54_2958 bacterial regulatory, Fis family protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D CH54_2038 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein
D CH54_3397 argP; transcriptional regulator, ArgP family protein K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D CH54_4080 asnC-type helix-turn-helix domain protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D CH54_828 asnC-type helix-turn-helix domain protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D CH54_404 asnC-type helix-turn-helix domain protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D CH54_3444 asnC-type helix-turn-helix domain protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D CH54_3990 37-kD nucleoid-associated bacterial family protein K06899 ndpA; nucleoid-associated protein
D CH54_4110 hypothetical protein K03632 mukB; chromosome partition protein MukB
D CH54_4109 mukE-like family protein K03804 mukE; chromosome partition protein MukE
D CH54_4108 kicB killing factor family protein K03633 mukF; chromosome partition protein MukF
D CH54_1775 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D CH54_1687 septum formation initiator family protein K05589 ftsB; cell division protein FtsB
D CH54_2809 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D CH54_154 penicillin binding transpeptidase domain protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D CH54_1785 penicillin binding transpeptidase domain protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D CH54_4081 ftsK/SpoIIIE family protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D CH54_1786 ftsL; cell division protein FtsL K03586 ftsL; cell division protein FtsL
D CH54_2687 ftsN; cell division protein FtsN K03591 ftsN; cell division protein FtsN
D CH54_1776 cell division FtsQ family protein K03589 ftsQ; cell division protein FtsQ
D CH54_1780 ftsW; cell division protein FtsW K03588 ftsW; cell division protein FtsW
D CH54_2810 ftsX; putative protein insertion permease FtsX K09811 ftsX; cell division transport system permease protein
D CH54_1774 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D CH54_1292 zipA; cell division protein ZipA K03528 zipA; cell division protein ZipA
D CH54_3401 cell division ZapA family protein K09888 zapA; cell division protein ZapA
D CH54_2682 hypothetical protein K09892 zapB; cell division protein ZapB
D CH54_4121 hypothetical protein K18657 zapC; cell division protein ZapC
D CH54_1767 hypothetical protein K18778 zapD; cell division protein ZapD
D CH54_3028 AFG1-like ATPase family protein K06916 zapE; cell division protein ZapE
D CH54_2020 hypothetical protein K07269 ytfB; cell division protein YtfB
D CH54_3497 N-acetylmuramoyl-L-alanine amidase family protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CH54_2041 N-acetylmuramoyl-L-alanine amidase family protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CH54_3720 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D CH54_600 minC; septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D CH54_601 minD; septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D CH54_602 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D CH54_13 cell division inhibitor SulA family protein K13053 sulA; cell division inhibitor SulA
D CH54_2642 bacterial regulatory s, tetR family protein K05501 slmA; TetR/AcrR family transcriptional regulator
D CH54_1172 seqA family protein K03645 seqA; negative modulator of initiation of replication
D CH54_2970 cell shape determining, MreB/Mrl family protein K03569 mreB; rod shape-determining protein MreB and related proteins
D CH54_2971 mreC; rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D CH54_2972 mreD; rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD
D CH54_1215 mrdB; rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA
D CH54_3130 parC; DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D CH54_3126 parE; DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D CH54_2535 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D CH54_2534 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D CH54_2778 xerC; tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC
D CH54_3419 xerD; tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD
D CH54_994 4Fe-4S iron sulfur cluster binding s, NifH/frxC family protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D CH54_2561 ysxC; ribosome biogenesis GTP-binding protein YsxC K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:ykr03400]
D CH54_381 methylated-DNA--[]-cysteine S-methyltransferase family protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D CH54_1161 FAD binding domain of DNA photolyase family protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D CH54_1511 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D CH54_3361 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D CH54_471 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D CH54_1769 mutator mutT family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D CH54_4011 NUDIX domain protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D CH54_2643 dut; dUTP diphosphatase family protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D CH54_2666 methylated-DNA--[]-cysteine S-methyltransferase family protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D CH54_3155 2OG-Fe(II) oxygenase superfamily protein K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
D CH54_770 hhH-GPD superbase excision DNA repair family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D CH54_2475 tag; DNA-3-methyladenine glycosylase I family protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D CH54_2648 mutM; DNA-formamidopyrimidine glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D CH54_566 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D CH54_4015 apurinic endonuclease family protein K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D CH54_2891 endonuclease V family protein K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
D CH54_3421 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D CH54_1291 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D CH54_2583 NAD-dependent DNA ligase adenylation domain protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D CH54_2560 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D CH54_2939 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D CH54_1102 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
D CH54_729 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D CH54_1524 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CH54_2780 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CH54_2880 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D CH54_2881 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D CH54_2228 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D CH54_2581 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D CH54_103 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D CH54_1679 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D CH54_2040 mutL; DNA mismatch repair MutL family protein K03572 mutL; DNA mismatch repair protein MutL
D CH54_3483 mutH; DNA mismatch repair endonuclease MutH K03573 mutH; DNA mismatch repair protein MutH
D CH54_971 hypothetical protein K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D CH54_1442 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D CH54_3670 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D CH54_176 exonuclease family protein K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-]
D CH54_3535 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D CH54_2495 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CH54_1932 DNA polymerase III chi subunit, HolC family protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D CH54_1210 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CH54_84 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D CH54_1585 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CH54_2630 exonuclease family protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CH54_3727 dnaX; DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CH54_1876 DNA polymerase III psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D CH54_178 DNA polymerase III, theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D CH54_2940 ssb; single-stranded DNA-binding family protein K03111 ssb; single-strand DNA-binding protein
D CH54_2303 dam; DNA adenine methylase family protein K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D CH54_2629 dam; DNA adenine methylase family protein K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D CH54_3494 recB; exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D CH54_3492 recC; exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D CH54_3495 recD; exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D CH54_1629 recA; protein RecA K03553 recA; recombination protein RecA
D CH54_622 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D CH54_621 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D CH54_623 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D CH54_3802 endodeoxyribonuclease RusA family protein K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]
D CH54_2689 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D CH54_2024 single-strand binding family protein K02686 priB; primosomal replication protein N
D CH54_3724 primosomal replication priB and priC family protein K04067 priC; primosomal replication protein N''
D CH54_3640 exonuclease SbcC family protein K03546 sbcC; DNA repair protein SbcC/Rad50
D CH54_3641 sbcD; exonuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11
D CH54_1862 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D CH54_2494 recF; DNA replication and repair RecF family protein K03629 recF; DNA replication and repair protein RecF
D CH54_2578 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D CH54_1497 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D CH54_3729 recR; recombination protein RecR K06187 recR; recombination protein RecR
D CH54_1514 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D CH54_3638 exonuclease, RdgC family protein K03554 rdgC; recombination associated protein RdgC
D CH54_28 cas1; CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1
D CH54_3992 DEAD/DEAH box helicase family protein K19789 radD; DNA repair protein RadD
D CH54_2289 type III restriction enzyme, res subunit K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
D CH54_3965 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D CH54_2493 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D CH54_497 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D CH54_2893 bacterial DNA-binding family protein K05787 hupA; DNA-binding protein HU-alpha
D CH54_3689 bacterial DNA-binding family protein K03530 hupB; DNA-binding protein HU-beta
D CH54_1431 hypothetical protein K10906 recE; exodeoxyribonuclease VIII [EC:3.1.11.-]
D CH54_3776 recombinase, phage RecT family protein K07455 recT; recombination protein RecT
D CH54_2958 bacterial regulatory, Fis family protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D CH54_258 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
D CH54_4096 ihfB; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta
D CH54_2789 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D CH54_555 H-NS histone family protein K03746 hns; DNA-binding protein H-NS
D CH54_3597 hypothetical protein K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D CH54_2928 lexA; repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D CH54_1810 DNA polymerase family B, exonuclease domain protein K02336 polB; DNA polymerase II [EC:2.7.7.7]
D CH54_67 dinI-like family protein K12149 dinI; DNA-damage-inducible protein I
D CH54_1628 recX family protein K03565 recX; regulatory protein
D CH54_2745 rep; ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D CH54_17 hypothetical protein K03658 helD; DNA helicase IV [EC:5.6.2.4]
D CH54_1061 DEAD_2 family protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D CH54_607 DEAD_2 family protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D CH54_1579 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D CH54_3963 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D CH54_3962 ribonucleotide reductase, small chain family protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D CH54_1580 ribonucleotide reductase, small chain family protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:ykr03029]
D CH54_1978 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D CH54_253 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D CH54_3521 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts
D CH54_2873 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D CH54_2257 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D CH54_1654 fusA; translation elongation factor G K02355 fusA; elongation factor G
D CH54_2258 fusA; translation elongation factor G K02355 fusA; elongation factor G
D CH54_1498 era; GTP-binding protein Era K03595 era; GTPase
D CH54_322 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CH54_1208 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D CH54_627 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D CH54_635 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D CH54_2092 DNA/RNA non-specific endonuclease family protein K01173 ENDOG; endonuclease G, mitochondrial
D CH54_2940 ssb; single-stranded DNA-binding family protein K03111 ssb; single-strand DNA-binding protein
D CH54_3528 yaeT; outer membrane assembly complex, YaeT protein K07277 SAM50; outer membrane protein insertion porin family
D CH54_1838 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D CH54_1512 grpE family protein K03687 GRPE; molecular chaperone GrpE
D CH54_2063 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CH54_2064 chaperonin 10 Kd subunit K04078 groES; chaperonin GroES
D CH54_1837 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D CH54_1467 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CH54_1463 hscB; Fe-S protein assembly co-chaperone HscB K04082 hscB; molecular chaperone HscB
D CH54_304 grxD; monothiol glutaredoxin, Grx4 family K07390 grxD; monothiol glutaredoxin
D CH54_994 4Fe-4S iron sulfur cluster binding s, NifH/frxC family protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D CH54_3676 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D CH54_2500 yidC; Preprotein translocase subunit YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CH54_3730 hsp90 family protein K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:ykr02000]
D CH54_875 ABC transporter family protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D CH54_874 ABC transporter family protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D CH54_4099 msbA; lipid A export permease/ATP-binding protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D CH54_3699 ABC transporter family protein K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D CH54_3700 ABC transporter family protein K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D CH54_461 type I secretion system ATPase family protein K12530 rtxB; ATP-binding cassette, subfamily B, bacterial RtxB
D CH54_459 type I secretion system ATPase family protein K12531 rtxE; ATP-binding cassette, subfamily B, bacterial RtxE
D CH54_2349 ABC transporter family protein K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D CH54_88 ABC transporter family protein K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D CH54_1231 ABC transporter family protein K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter
D CH54_138 ABC transporter family protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D CH54_3972 type I secretion system ATPase family protein K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D CH54_2705 type I secretion system ATPase family protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D CH54_4075 cydC; thiol reductant ABC exporter, CydC subunit K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D CH54_4076 cydD; thiol reductant ABC exporter, CydD subunit K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D CH54_4069 ABC transporter family protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D CH54_1663 ABC transporter family protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D CH54_2 ccmA; heme ABC exporter, ATP-binding protein CcmA K15738 uup; ABC transport system ATP-binding/permease protein
D CH54_1304 sulfate ABC transporter, sulfate-binding family protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D CH54_2672 sulfate ABC transporter, sulfate-binding family protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D CH54_1303 cysT; sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D CH54_1302 cysW; sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D CH54_1301 cysA; sulfate ABC transporter, ATP-binding family protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D CH54_1113 modA; molybdate ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D CH54_1112 modB; molybdate ABC transporter, permease protein K02018 modB; molybdate transport system permease protein
D CH54_1111 modC; molybdate ABC transporter, ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D CH54_1116 ABC transporter family protein K05776 modF; molybdate transport system ATP-binding protein
D CH54_2277 tauA; taurine ABC transporter, periplasmic binding protein K15551 tauA; taurine transport system substrate-binding protein
D CH54_2275 binding--dependent transport system inner membrane component family protein K15552 tauC; taurine transport system permease protein
D CH54_2276 ABC transporter family protein K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7]
D CH54_3295 bacterial extracellular solute-binding s, 3 family protein K15553 ssuA; sulfonate transport system substrate-binding protein
D CH54_3297 binding--dependent transport system inner membrane component family protein K15554 ssuC; sulfonate transport system permease protein
D CH54_3296 ABC transporter family protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D CH54_1251 bacterial extracellular solute-binding family protein K02012 afuA; iron(III) transport system substrate-binding protein
D CH54_1331 bacterial extracellular solute-binding family protein K02012 afuA; iron(III) transport system substrate-binding protein
D CH54_869 bacterial extracellular solute-binding family protein K02012 afuA; iron(III) transport system substrate-binding protein
D CH54_1252 binding--dependent transport system inner membrane component family protein K02011 afuB; iron(III) transport system permease protein
D CH54_1330 binding--dependent transport system inner membrane component family protein K02011 afuB; iron(III) transport system permease protein
D CH54_870 binding--dependent transport system inner membrane component family protein K02011 afuB; iron(III) transport system permease protein
D CH54_1253 ABC transporter family protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D CH54_1329 ABC transporter family protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D CH54_871 ABC transporter family protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D CH54_1806 thiB; thiamin/thiamine pyrophosphate ABC transporter, thiamin/thiamine pyrophospate-binding protein K02064 thiB; thiamine transport system substrate-binding protein
D CH54_1807 thiP; thiamine/thiamine pyrophosphate ABC transporter, permease protein K02063 thiP; thiamine transport system permease protein
D CH54_1808 thiQ; thiamine ABC transporter, ATP-binding protein K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D CH54_4046 bacterial extracellular solute-binding family protein K11073 potF; putrescine transport system substrate-binding protein
D CH54_4049 binding--dependent transport system inner membrane component family protein K11074 potI; putrescine transport system permease protein
D CH54_4048 binding--dependent transport system inner membrane component family protein K11075 potH; putrescine transport system permease protein
D CH54_4047 polyamine ABC transporter, ATP-binding family protein K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D CH54_1583 substrate binding domain of ABC-type glycine betaine transport system family protein K02002 proX; glycine betaine/proline transport system substrate-binding protein
D CH54_1582 binding--dependent transport system inner membrane component family protein K02001 proW; glycine betaine/proline transport system permease protein
D CH54_1581 proV; glycine betaine/L-proline transport ATP binding subunit K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D CH54_1070 substrate binding domain of ABC-type glycine betaine transport system family protein K05845 opuC; osmoprotectant transport system substrate-binding protein
D CH54_1067 binding--dependent transport system inner membrane component family protein K05846 opuBD; osmoprotectant transport system permease protein
D CH54_1069 binding--dependent transport system inner membrane component family protein K05846 opuBD; osmoprotectant transport system permease protein
D CH54_1068 ABC transporter family protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D CH54_2919 bacterial extracellular solute-binding family protein K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D CH54_2918 binding--dependent transport system inner membrane component family protein K10109 malF; maltose/maltodextrin transport system permease protein
D CH54_2917 binding--dependent transport system inner membrane component family protein K10110 malG; maltose/maltodextrin transport system permease protein
D CH54_2920 ABC transporter family protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D CH54_1958 ABC transporter family protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D CH54_227 bacterial extracellular solute-binding family protein K10192 togB; oligogalacturonide transport system substrate-binding protein
D CH54_230 binding--dependent transport system inner membrane component family protein K10193 togM; oligogalacturonide transport system permease protein
D CH54_229 binding--dependent transport system inner membrane component family protein K10194 togN; oligogalacturonide transport system permease protein
D CH54_228 ABC transporter family protein K10195 togA; oligogalacturonide transport system ATP-binding protein
D CH54_1025 periplasmic binding domain protein K10540 mglB; methyl-galactoside transport system substrate-binding protein
D CH54_1023 branched-chain amino acid transport system / permease component family protein K10541 mglC; methyl-galactoside transport system permease protein
D CH54_1024 ABC transporter family protein K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11]
D CH54_2443 xylF; D-xylose ABC transporter, D-xylose-binding protein K10543 xylF; D-xylose transport system substrate-binding protein
D CH54_2441 branched-chain amino acid transport system / permease component family protein K10544 xylH; D-xylose transport system permease protein
D CH54_2442 ccmA; heme ABC exporter, ATP-binding protein CcmA K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10]
D CH54_2546 periplasmic binding domain protein K10439 rbsB; ribose transport system substrate-binding protein
D CH54_2545 branched-chain amino acid transport system / permease component family protein K10440 rbsC; ribose transport system permease protein
D CH54_2544 ccmA; heme ABC exporter, ATP-binding protein CcmA K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D CH54_670 periplasmic binding domain protein K17213 K17213; inositol transport system substrate-binding protein
D CH54_668 branched-chain amino acid transport system / permease component family protein K17214 K17214; inositol transport system permease protein
D CH54_669 ABC transporter family protein K17215 K17215; inositol transport system ATP-binding protein
D CH54_2825 bacterial extracellular solute-binding family protein K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein
D CH54_2826 binding--dependent transport system inner membrane component family protein K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein
D CH54_2827 binding--dependent transport system inner membrane component family protein K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein
D CH54_2828 ABC transporter family protein K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10]
D CH54_1906 periplasmic binding domain protein K10555 lsrB; AI-2 transport system substrate-binding protein
D CH54_1904 branched-chain amino acid transport system / permease component family protein K10556 lsrC; AI-2 transport system permease protein
D CH54_1905 branched-chain amino acid transport system / permease component family protein K10557 lsrD; AI-2 transport system permease protein
D CH54_1903 ccmA; heme ABC exporter, ATP-binding protein CcmA K10558 lsrA; AI-2 transport system ATP-binding protein
D CH54_3020 mlaD; outer membrane lipid asymmetry maintenance protein MlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D CH54_1243 mce related family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D CH54_3019 ABC transport permease subunit K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D CH54_1245 ABC transport permease subunit K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D CH54_3018 ABC transporter family protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D CH54_1244 ABC transporter family protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D CH54_1242 hypothetical protein K18480 linN; cholesterol transport system auxiliary component
D CH54_3021 toluene tolerance, Ttg2 family protein K07323 mlaC; phospholipid transport system substrate-binding protein
D CH54_3022 STAS domain protein K07122 mlaB; phospholipid transport system transporter-binding protein
D CH54_1961 bacterial extracellular solute-binding family protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D CH54_1960 binding--dependent transport system inner membrane component family protein K02025 ABC.MS.P; multiple sugar transport system permease protein
D CH54_1959 binding--dependent transport system inner membrane component family protein K02026 ABC.MS.P1; multiple sugar transport system permease protein
D CH54_964 periplasmic binding domain protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein
D CH54_997 periplasmic binding domain protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein
D CH54_966 branched-chain amino acid transport system / permease component family protein K02057 ABC.SS.P; simple sugar transport system permease protein
D CH54_967 branched-chain amino acid transport system / permease component family protein K02057 ABC.SS.P; simple sugar transport system permease protein
D CH54_976 branched-chain amino acid transport system / permease component family protein K02057 ABC.SS.P; simple sugar transport system permease protein
D CH54_965 ABC transporter family protein K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-]
D CH54_975 ABC transporter family protein K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-]
D CH54_3645 pstS; phosphate ABC transporter, phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D CH54_2521 pstS; phosphate ABC transporter, phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D CH54_2520 pstC; phosphate ABC transporter, permease protein PstC K02037 pstC; phosphate transport system permease protein
D CH54_1360 binding--dependent transport system inner membrane component family protein K02037 pstC; phosphate transport system permease protein
D CH54_2519 pstA; phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein
D CH54_1359 pstA; phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein
D CH54_2518 pstB; phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D CH54_1358 pstB; phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D CH54_1077 phnD; phosphonate ABC transporter, periplasmic phosphonate binding protein K02044 phnD; phosphonate transport system substrate-binding protein
D CH54_1075 phnE; phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein
D CH54_1076 phnE; phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein
D CH54_1078 phnC; phosphonate ABC transporter, ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D CH54_403 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10015 hisM; histidine transport system permease protein
D CH54_3903 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10015 hisM; histidine transport system permease protein
D CH54_3902 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10016 hisQ; histidine transport system permease protein
D CH54_402 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10016 hisQ; histidine transport system permease protein
D CH54_3904 ABC transporter family protein K10017 hisP; histidine transport system ATP-binding protein [EC:7.4.2.1]
D CH54_401 lysine-arginine-ornithine-binding periplasmic family protein K10014 hisJ; histidine transport system substrate-binding protein
D CH54_3901 lysine-arginine-ornithine-binding periplasmic family protein K10014 hisJ; histidine transport system substrate-binding protein
D CH54_1052 bacterial extracellular solute-binding s, 3 family protein K10036 glnH; glutamine transport system substrate-binding protein
D CH54_1053 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10037 glnP; glutamine transport system permease protein
D CH54_1054 ABC transporter family protein K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1]
D CH54_4052 lysine-arginine-ornithine-binding periplasmic family protein K09996 artJ; arginine transport system substrate-binding protein
D CH54_4055 lysine-arginine-ornithine-binding periplasmic family protein K09997 artI; arginine transport system substrate-binding protein
D CH54_4053 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K09998 artM; arginine transport system permease protein
D CH54_4054 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K09999 artQ; arginine transport system permease protein
D CH54_4056 ABC transporter family protein K10000 artP; arginine transport system ATP-binding protein [EC:7.4.2.1]
D CH54_1202 bacterial extracellular solute-binding s, 3 family protein K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D CH54_1204 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10002 gltK; glutamate/aspartate transport system permease protein
D CH54_1203 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10003 gltJ; glutamate/aspartate transport system permease protein
D CH54_1205 ABC transporter family protein K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D CH54_760 bacterial extracellular solute-binding s, 3 family protein K02424 tcyA; L-cystine transport system substrate-binding protein
D CH54_759 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10009 tcyB; L-cystine transport system permease protein
D CH54_758 ABC transporter family protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D CH54_1643 periplasmic binding domain protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D CH54_2814 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D CH54_2815 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein
D CH54_2816 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein
D CH54_2817 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D CH54_2818 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D CH54_3551 lipo, YaeC family protein K02073 metQ; D-methionine transport system substrate-binding protein
D CH54_4028 NLPA lipofamily protein K02073 metQ; D-methionine transport system substrate-binding protein
D CH54_2503 NLPA lipofamily protein K02073 metQ; D-methionine transport system substrate-binding protein
D CH54_3552 binding--dependent transport system inner membrane component family protein K02072 metI; D-methionine transport system permease protein
D CH54_4030 binding--dependent transport system inner membrane component family protein K02072 metI; D-methionine transport system permease protein
D CH54_2505 binding--dependent transport system inner membrane component family protein K02072 metI; D-methionine transport system permease protein
D CH54_3553 metN; D-methionine ABC transporter, ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D CH54_4029 ABC transporter family protein K02071 metN; D-methionine transport system ATP-binding protein
D CH54_2504 ABC transporter family protein K02071 metN; D-methionine transport system ATP-binding protein
D CH54_1637 urea ABC transporter, substrate-binding protein K11959 urtA; urea transport system substrate-binding protein
D CH54_1638 branched-chain amino acid transport system / permease component family protein K11960 urtB; urea transport system permease protein
D CH54_1639 branched-chain amino acid transport system / permease component family protein K11961 urtC; urea transport system permease protein
D CH54_1640 ABC transporter family protein K11962 urtD; urea transport system ATP-binding protein
D CH54_1103 ABC transporter family protein K11963 urtE; urea transport system ATP-binding protein
D CH54_1641 ABC transporter family protein K11963 urtE; urea transport system ATP-binding protein
D CH54_2515 bacterial extracellular solute-binding s, 3 family protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D CH54_1688 bacterial extracellular solute-binding s, 3 family protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D CH54_2512 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K02029 ABC.PA.P; polar amino acid transport system permease protein
D CH54_2514 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K02029 ABC.PA.P; polar amino acid transport system permease protein
D CH54_1689 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K02029 ABC.PA.P; polar amino acid transport system permease protein
D CH54_1690 ABC transporter family protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D CH54_548 bacterial extracellular solute-binding s, 5 Middle family protein K15580 oppA; oligopeptide transport system substrate-binding protein
D CH54_549 bacterial extracellular solute-binding s, 5 Middle family protein K15580 oppA; oligopeptide transport system substrate-binding protein
D CH54_351 bacterial extracellular solute-binding s, 5 Middle family protein K15580 oppA; oligopeptide transport system substrate-binding protein
D CH54_547 binding--dependent transport system inner membrane component family protein K15581 oppB; oligopeptide transport system permease protein
D CH54_546 binding--dependent transport system inner membrane component family protein K15582 oppC; oligopeptide transport system permease protein
D CH54_545 hypothetical protein K15583 oppD; oligopeptide transport system ATP-binding protein
D CH54_544 hypothetical protein K10823 oppF; oligopeptide transport system ATP-binding protein
D CH54_2418 bacterial extracellular solute-binding s, 5 Middle family protein K12368 dppA; dipeptide transport system substrate-binding protein
D CH54_2417 binding--dependent transport system inner membrane component family protein K12369 dppB; dipeptide transport system permease protein
D CH54_2416 binding--dependent transport system inner membrane component family protein K12370 dppC; dipeptide transport system permease protein
D CH54_2415 hypothetical protein K12371 dppD; dipeptide transport system ATP-binding protein
D CH54_2414 hypothetical protein K12372 dppF; dipeptide transport system ATP-binding protein
D CH54_335 bacterial extracellular solute-binding s, 5 Middle family protein K19226 sapA; cationic peptide transport system substrate-binding protein
D CH54_334 binding--dependent transport system inner membrane component family protein K19227 sapB; cationic peptide transport system permease protein
D CH54_333 binding--dependent transport system inner membrane component family protein K19228 sapC; cationic peptide transport system permease protein
D CH54_332 hypothetical protein K19229 sapD; cationic peptide transport system ATP-binding protein
D CH54_331 ABC transporter family protein K19230 sapF; cationic peptide transport system ATP-binding protein
D CH54_879 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D CH54_1563 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D CH54_1938 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D CH54_878 binding--dependent transport system inner membrane component family protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D CH54_1562 binding--dependent transport system inner membrane component family protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D CH54_1939 binding--dependent transport system inner membrane component family protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D CH54_877 binding--dependent transport system inner membrane component family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D CH54_1561 binding--dependent transport system inner membrane component family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D CH54_1940 binding--dependent transport system inner membrane component family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D CH54_876 ccmA; heme ABC exporter, ATP-binding protein CcmA K02031 ddpD; peptide/nickel transport system ATP-binding protein
D CH54_1941 ABC transporter family protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D CH54_1560 ABC transporter family protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D CH54_1559 ABC transporter family protein K02032 ddpF; peptide/nickel transport system ATP-binding protein
D CH54_1942 ABC transporter family protein K02032 ddpF; peptide/nickel transport system ATP-binding protein
D CH54_3999 bacterial extracellular solute-binding s, 5 Middle family protein K13893 yejA; microcin C transport system substrate-binding protein
D CH54_3998 binding--dependent transport system inner membrane component family protein K13894 yejB; microcin C transport system permease protein
D CH54_3997 binding--dependent transport system inner membrane component family protein K13895 yejE; microcin C transport system permease protein
D CH54_3996 nikE; nickel import ATP-binding protein NikE K13896 yejF; microcin C transport system ATP-binding protein
D CH54_1722 periplasmic binding family protein K23227 fhuD; ferric hydroxamate transport system substrate-binding protein
D CH54_1721 fecCD transport family protein K23228 fhuB; ferric hydroxamate transport system permease protein
D CH54_1723 ABC transporter family protein K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16]
D CH54_2162 periplasmic binding family protein K25132 hmuT; heme transport system substrate-binding protein
D CH54_274 periplasmic binding family protein K25132 hmuT; heme transport system substrate-binding protein
D CH54_2163 fecCD transport family protein K25133 hmuU; heme transport system permease protein
D CH54_2164 ABC transporter family protein K10834 hmuV; heme transport system ATP-binding protein [EC:7.6.2.5]
D CH54_3170 periplasmic binding family protein K23185 fepB; ferric enterobactin transport system substrate-binding protein
D CH54_3167 fecCD transport family protein K23186 fepD; iron-siderophore transport system permease protein
D CH54_3168 fecCD transport family protein K23187 fepG; iron-siderophore transport system permease protein
D CH54_3169 ABC transporter family protein K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]
D CH54_3246 periplasmic binding family protein K25282 yclQ; iron-siderophore transport system substrate-binding protein
D CH54_3248 fecCD transport family protein K25283 yclO; iron-siderophore transport system permease protein
D CH54_3247 fecCD transport family protein K25284 yclN; iron-siderophore transport system permease protein
D CH54_3249 ABC transporter family protein K25285 yclP; iron-siderophore transport system ATP-binding protein [EC:7.2.2.-]
D CH54_1715 periplasmic binding family protein K06858 btuF; vitamin B12 transport system substrate-binding protein
D CH54_261 fecCD transport family protein K06073 btuC; vitamin B12 transport system permease protein
D CH54_263 ABC transporter family protein K06074 btuD; vitamin B12 transport system ATP-binding protein [EC:7.6.2.8]
D CH54_617 periplasmic solute binding family protein K09815 znuA; zinc transport system substrate-binding protein
D CH54_619 ABC 3 transport family protein K09816 znuB; zinc transport system permease protein
D CH54_618 ABC transporter family protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D CH54_241 periplasmic solute binding family protein K11604 sitA; manganese/iron transport system substrate-binding protein
D CH54_239 ABC 3 transport family protein K11605 sitC; manganese/iron transport system permease protein
D CH54_238 ABC 3 transport family protein K11606 sitD; manganese/iron transport system permease protein
D CH54_240 ABC transporter family protein K11607 sitB; manganese/iron transport system ATP-binding protein
D CH54_924 cbiN; cobalt transport family protein K02009 cbiN; cobalt/nickel transport protein
D CH54_923 cbiQ; cobalt ABC transporter, permease protein CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D CH54_925 cbiM; cobalamin biosynthesis protein CbiM K02007 cbiM; cobalt/nickel transport system permease protein
D CH54_922 cobalt ABC transporter, ATP-binding family protein K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D CH54_3711 periplasmic solute binding family protein K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein
D CH54_3710 ABC 3 transport family protein K02075 ABC.ZM.P; zinc/manganese transport system permease protein
D CH54_3709 ABC transporter family protein K02074 ABC.ZM.A; zinc/manganese transport system ATP-binding protein
D CH54_1930 lptF; LPS export ABC transporter permease LptF K07091 lptF; lipopolysaccharide export system permease protein
D CH54_1929 lptG; LPS export ABC transporter permease LptG K11720 lptG; lipopolysaccharide export system permease protein
D CH54_3012 lptB; LPS export ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D CH54_1094 ABC-2 type transporter family protein K25180 ybhR; drug efflux transport system permease protein
D CH54_1093 ABC-2 type transporter family protein K25181 ybhS; drug efflux transport system permease protein
D CH54_1092 ccmA; heme ABC exporter, ATP-binding protein CcmA K25182 ybhF; drug efflux transport system ATP-binding protein
D CH54_1091 efflux transporter, RND family, MFP subunit K25183 ybhG; membrane fusion protein YbhG
D CH54_104 liporeleasing system, transmembrane, LolC/E family protein K09808 lolC_E; lipoprotein-releasing system permease protein
D CH54_106 lolE; liporeleasing system, transmembrane protein LolE K09808 lolC_E; lipoprotein-releasing system permease protein
D CH54_105 lolD; liporeleasing system, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D CH54_3849 ccmD; heme exporter protein CcmD K02196 ccmD; heme exporter protein D
D CH54_3848 ccmC; heme exporter CcmC family protein K02195 ccmC; heme exporter protein C
D CH54_3847 ccmB; heme exporter protein CcmB K02194 ccmB; heme exporter protein B
D CH54_3846 ccmA; heme ABC exporter, ATP-binding protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D CH54_2810 ftsX; putative protein insertion permease FtsX K09811 ftsX; cell division transport system permease protein
D CH54_2809 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D CH54_1736 ABC-2 type transporter family protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D CH54_3057 ABC-2 transporter family protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D CH54_1737 ABC transporter family protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CH54_1034 putative membrane protein K02004 ABC.CD.P; putative ABC transport system permease protein
D CH54_705 ftsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein
D CH54_706 ftsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein
D CH54_3756 ftsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein
D CH54_1036 ABC transporter family protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D CH54_704 ABC transporter family protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D CH54_3755 ABC transporter family protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D CH54_285 sufC; FeS assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein
D CH54_450 hypothetical protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D CH54_295 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump
D CH54_911 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D CH54_1802 sugar efflux transporter family protein K03291 MFS.SET; MFS transporter, SET family, sugar efflux transporter
D CH54_913 nucleoside transporter family protein K11537 xapB; MFS transporter, NHS family, xanthosine permease
D CH54_1038 MFS transporter, metabolite:H+ symporter family protein K03761 kgtP; MFS transporter, MHS family, alpha-ketoglutarate permease
D CH54_1842 sugar (and other) transporter family protein K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D CH54_3243 sugar (and other) transporter family protein K08173 ydfJ; MFS transporter, MHS family, metabolite:H+ symporter
D CH54_1271 major Facilitator Superfamily protein K08177 oxlT; MFS transporter, OFA family, oxalate/formate antiporter
D CH54_1305 sugar (and other) transporter family protein K03290 nanT; MFS transporter, SHS family, sialic acid transporter
D CH54_3077 major Facilitator Superfamily protein K08191 exuT; MFS transporter, ACS family, aldohexuronate transporter
D CH54_3447 major Facilitator Superfamily protein K08191 exuT; MFS transporter, ACS family, aldohexuronate transporter
D CH54_2074 D-galactonate transporter family protein K12299 garP; MFS transporter, ACS family, probable galactarate transporter
D CH54_1473 lacY proton/sugar symporter family protein K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter
D CH54_2795 glpT; glycerol-3-phosphate transporter K02445 glpT; MFS transporter, OPA family, glycerol-3-phosphate transporter
D CH54_2424 phosphoglycerate transporter family protein K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC
D CH54_868 major Facilitator Superfamily protein K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC
D CH54_3480 major Facilitator Superfamily protein K08227 lplT; MFS transporter, LPLT family, lysophospholipid transporter
D CH54_3165 major Facilitator Superfamily protein K08225 entS; MFS transporter, ENTS family, enterobactin (siderophore) exporter
D CH54_3682 AmpG-like permease family protein K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D CH54_586 drug resistance transporter, Bcr/CflA subfamily protein K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D CH54_3994 drug resistance transporter, Bcr/CflA subfamily protein K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D CH54_2678 sugar (and other) transporter family protein K08154 emrD; MFS transporter, DHA1 family, 2-module integral membrane pump EmrD
D CH54_411 sugar (and other) transporter family protein K08160 mdfA; MFS transporter, DHA1 family, multidrug/chloramphenicol efflux transport protein
D CH54_2451 sugar (and other) transporter family protein K08160 mdfA; MFS transporter, DHA1 family, multidrug/chloramphenicol efflux transport protein
D CH54_56 sugar (and other) transporter family protein K08161 mdtG; MFS transporter, DHA1 family, multidrug resistance protein
D CH54_640 major Facilitator Superfamily protein K08162 mdtH; MFS transporter, DHA1 family, multidrug resistance protein
D CH54_3474 sugar (and other) transporter family protein K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D CH54_1592 sugar (and other) transporter family protein K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D CH54_3566 drug resistance MFS transporter, drug:H+ antiporter-2 family protein K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D CH54_1246 major Facilitator Superfamily protein K08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein
D CH54_220 major Facilitator Superfamily protein K08169 yebQ; MFS transporter, DHA2 family, multidrug resistance protein
D CH54_3744 major Facilitator Superfamily protein K08223 fsr; MFS transporter, FSR family, fosmidomycin resistance protein
D CH54_436 sugar (and other) transporter family protein K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein
D CH54_4085 sugar (and other) transporter family protein K08219 UMF2; MFS transporter, UMF2 family, putative MFS family transporter protein
D CH54_2293 major Facilitator Superfamily protein K06141 tsgA; MFS transporter, TsgA protein
D CH54_1296 ptsP; phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D CH54_3485 ptsP; phosphoenolpyruvate-protein phosphotransferase K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D CH54_1295 phosphocarrier, HPr family protein K02784 ptsH; phosphocarrier protein HPr
D CH54_3007 phosphocarrier, HPr family protein K08485 ptsO; phosphocarrier protein NPr
D CH54_4012 phosphocarrier, HPr family protein K11183 fruB; multiphosphoryl transfer protein [EC:2.7.1.202]
D CH54_1297 ptbA; PTS system, glucose subfamily, IIA component domain protein K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D CH54_86 ptsG; PTS system, glucose-specific IIBC component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
D CH54_1183 nagE; PTS system, N-acetylglucosamine-specific IIBC component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D CH54_447 PTS system, glucose-like IIB component domain protein K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D CH54_3985 phosphotransferase system, EIIB family protein K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D CH54_1238 PTS system, glucose-like IIB component domain protein K02753 ascF; beta-glucoside (arbutin/salicin/cellobiose) PTS system EIICB component [EC:2.7.1.-]
D CH54_3001 treP; PTS system, trehalose-specific IIBC component K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D CH54_3095 phosphotransferase system, EIIC family protein K11192 murP; N-acetylmuramic acid PTS system EIICB component [EC:2.7.1.192]
D CH54_3623 PTS system, alpha-glucoside-specific IIBC component domain protein K02750 glvC; alpha-glucoside PTS system EIICB component [EC:2.7.1.208 2.7.1.-]
D CH54_4014 PTS system, Fru family, IIB component domain protein K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D CH54_2469 mtlA; PTS system, mannitol-specific IIC component family protein K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D CH54_3873 PTS system, Lactose/Cellobiose specific IIA subunit K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D CH54_1539 PTS system, Lactose/Cellobiose specific IIA subunit K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D CH54_3876 PTS system, Lactose/Cellobiose specific IIB subunit K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D CH54_1542 PTS system, lactose/cellobiose family IIB component domain protein K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D CH54_3875 PTS system, lactose/cellobiose IIC component family protein K02761 celB; cellobiose PTS system EIIC component
D CH54_1541 celB; PTS system, cellobiose-specific IIC component K02761 celB; cellobiose PTS system EIIC component
D CH54_1378 PTS system glucitol/sorbitol-specific IIA component family protein K02781 srlB; glucitol/sorbitol PTS system EIIA component [EC:2.7.1.198]
D CH54_1377 PTS system, glucitol/sorbitol-specific, IIBC component family protein K02782 srlE; glucitol/sorbitol PTS system EIIB component [EC:2.7.1.198]
D CH54_1376 srlA; PTS system, glucitol/sorbitol-specific, IIC component family protein K02783 srlA; glucitol/sorbitol PTS system EIIC component
D CH54_163 PTS system, mannose/fructose/sorbose, IIB component family protein K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D CH54_162 PTS system, mannose/fructose/sorbose, IIC component family protein K02795 manY; mannose PTS system EIIC component
D CH54_161 PTS system, mannose/fructose/sorbose, IID component family protein K02796 manZ; mannose PTS system EIID component
D CH54_1648 PTS system, mannose/fructose/sorbose family, IIA component domain protein K02812 sorF; sorbose PTS system EIIA component [EC:2.7.1.206]
D CH54_1649 PTS system, mannose/fructose/sorbose, IIB component family protein K02813 sorB; sorbose PTS system EIIB component [EC:2.7.1.206]
D CH54_1650 PTS system, mannose/fructose/sorbose, IIC component family protein K02814 sorA; sorbose PTS system EIIC component
D CH54_1651 PTS system, mannose/fructose/sorbose, IID component family protein K02815 sorM; sorbose PTS system EIID component
D CH54_3911 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 family protein K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D CH54_3910 PTS system, Lactose/Cellobiose specific IIB subunit K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D CH54_3909 PTS system sugar-specific permease component family protein K03475 ulaA; ascorbate PTS system EIIC component
D CH54_3009 ptsN; PTS IIA-like nitrogen-regulatory protein PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D CH54_1891 dihydroxyacetone kinase, phosphotransfer subunit K05881 dhaM; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaM [EC:2.7.1.121]
D CH54_1060 MIP channel s family protein K06188 aqpZ; aquaporin Z
D CH54_2681 MIP channel s family protein K02440 glpF; glycerol uptake facilitator
D CH54_939 MIP channel s family protein K27261 pduF; propanediol uptake facilitator
D CH54_1547 trkA-N domain protein K10716 kch; voltage-gated potassium channel
D CH54_3702 amt; ammonium transporter family protein K03320 amt; ammonium transporter, Amt family
D CH54_324 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D CH54_2944 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D CH54_4024 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D CH54_3031 hypothetical protein K03599 sspA; stringent starvation protein A
D CH54_4088 focA; formate transporter FocA K06212 focA; formate transporter
D CH54_1022 focA; formate transporter FocA K06212 focA; formate transporter
D CH54_2298 fnt; formate/nitrite transporter family protein K02598 nirC; nitrite transporter
D CH54_2223 mscL; large conductance mechanosensitive channel protein K03282 mscL; large conductance mechanosensitive channel
D CH54_2168 mechanosensitive ion channel family protein K05802 mscK; potassium-dependent mechanosensitive channel
D CH54_3723 mechanosensitive ion channel family protein K05802 mscK; potassium-dependent mechanosensitive channel
D CH54_2051 mechanosensitive ion channel family protein K22051 mscM; miniconductance mechanosensitive channel
D CH54_3394 mechanosensitive ion channel family protein K03442 mscS; small conductance mechanosensitive channel
D CH54_196 mechanosensitive ion channel family protein K16052 ynaI; MscS family membrane protein
D CH54_1364 mgtE; magnesium transporter K06213 mgtE; magnesium transporter
D CH54_1086 divalent cation transporter family protein K06213 mgtE; magnesium transporter
D CH54_1550 yut; urea transporter K08717 utp; urea transporter
D CH54_814 motA; flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA
D CH54_3216 motA; flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA
D CH54_813 membrane MotB of proton-channel complex MotA/MotB family protein K02557 motB; chemotaxis protein MotB
D CH54_3217 membrane MotB of proton-channel complex MotA/MotB family protein K02557 motB; chemotaxis protein MotB
D CH54_3139 exbB; tonB-system energizer ExbB K03561 exbB; biopolymer transport protein ExbB
D CH54_3140 exbD; TonB system transport protein ExbD K03559 exbD; biopolymer transport protein ExbD
D CH54_1137 tolQ; protein TolQ K03562 tolQ; biopolymer transport protein TolQ
D CH54_1136 tolR; protein TolR K03560 tolR; biopolymer transport protein TolR
D CH54_2785 corA; magnesium and cobalt transport protein CorA K03284 corA; magnesium transporter
D CH54_353 corA-like Mg2+ transporter family protein K16074 zntB; zinc transporter
D CH54_1223 crcB-like family protein K06199 crcB; fluoride exporter
D CH54_1545 crcB-like family protein K06199 crcB; fluoride exporter
D CH54_1546 crcB-like family protein K06199 crcB; fluoride exporter
D CH54_2012 CBS domain protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D CH54_1617 CBS domain protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D CH54_4116 gram-negative porin family protein K09476 ompF; outer membrane pore protein F
D CH54_1062 gram-negative porin family protein K11929 phoE; outer membrane pore protein E
D CH54_3974 gram-negative porin family protein K09475 ompC; outer membrane pore protein C
D CH54_3872 lamB porin family protein K02024 lamB; maltoporin
D CH54_2921 lamB porin family protein K02024 lamB; maltoporin
D CH54_12 ompA-like transmembrane domain protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D CH54_1044 ompA-like transmembrane domain protein K11934 ompX; outer membrane protein X
D CH54_3856 outer membrane transport family protein K06076 fadL; long-chain fatty acid transport protein
D CH54_2376 hypothetical protein K07347 fimD; outer membrane usher protein
D CH54_206 outer membrane usher family protein K07347 fimD; outer membrane usher protein
D CH54_899 hypothetical protein K07347 fimD; outer membrane usher protein
D CH54_2741 hypothetical protein K07347 fimD; outer membrane usher protein
D CH54_250 outer membrane autotransporter barrel domain protein K12678 aidA-I; autotransporter family porin
D CH54_522 outer membrane autotransporter barrel domain protein K12678 aidA-I; autotransporter family porin
D CH54_3236 outer membrane autotransporter barrel domain protein K12678 aidA-I; autotransporter family porin
D CH54_3654 outer membrane autotransporter barrel domain protein K12678 aidA-I; autotransporter family porin
D CH54_3086 outer membrane autotransporter barrel domain protein K12678 aidA-I; autotransporter family porin
D CH54_1751 TonB-dependent siderophore receptor family protein K19611 fepA; ferric enterobactin receptor
D CH54_2715 btuB; TonB-dependent vitamin B12 receptor K16092 btuB; vitamin B12 transporter
D CH54_2701 heme-binding A family protein K12545 hasA; heme acquisition protein HasA
D CH54_2702 heme-binding A family protein K12545 hasA; heme acquisition protein HasA
D CH54_2703 heme-binding A family protein K12545 hasA; heme acquisition protein HasA
D CH54_2704 heme-binding A family protein K12545 hasA; heme acquisition protein HasA
D CH54_2700 TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein K16152 hasR; heme acquisition protein HasR
D CH54_4023 tonB dependent receptor family protein K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins
D CH54_276 TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D CH54_2160 TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D CH54_3161 TonB-dependent siderophore receptor family protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D CH54_880 tonB dependent receptor family protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D CH54_158 TonB-dependent siderophore receptor family protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D CH54_2167 TonB-dependent siderophore receptor family protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D CH54_3121 type I secretion outer membrane, TolC family protein K12340 tolC; outer membrane protein
D CH54_3971 type I secretion outer membrane, TolC family protein K12543 lapE; outer membrane protein, adhesin transport system
D CH54_3528 yaeT; outer membrane assembly complex, YaeT protein K07277 SAM50; outer membrane protein insertion porin family
D CH54_1446 yfgL; outer membrane assembly lipoprotein YfgL K17713 bamB; outer membrane protein assembly factor BamB
D CH54_1344 nlpB/DapX lipofamily protein K07287 bamC; outer membrane protein assembly factor BamC
D CH54_1603 yfiO; outer membrane assembly lipoYfiO family protein K05807 bamD; outer membrane protein assembly factor BamD
D CH54_1515 smpA / OmlA family protein K06186 bamE; outer membrane protein assembly factor BamE
D CH54_2010 surface antigen variable number repeat family protein K07278 tamA; translocation and assembly module TamA
D CH54_2009 hypothetical protein K09800 tamB; translocation and assembly module TamB
D CH54_2403 outer membrane beta-barrel domain protein K22110 kdgM; oligogalacturonate-specific porin family protein
D CH54_226 outer membrane beta-barrel domain protein K22110 kdgM; oligogalacturonate-specific porin family protein
D CH54_3013 lptA; lipopolysaccharide transport periplasmic protein LptA K09774 lptA; lipopolysaccharide export system protein LptA
D CH54_3014 lptC; LPS export ABC transporter periplasmic protein LptC K11719 lptC; lipopolysaccharide export system protein LptC
D CH54_1814 organic solvent tolerance family protein K04744 lptD; LPS-assembly protein
D CH54_1209 lipopolysaccharide-assembly family protein K03643 lptE; LPS-assembly lipoprotein
D CH54_2405 tetratricopeptide repeat family protein K20543 bcsC; cellulose synthase operon protein C
D CH54_2195 espA-like secreted family protein K15344 sseB; secreted effector protein SseB
D CH54_2193 secretion system effector C (SseC) like family protein K15345 sseC; secreted effector protein SseC
D CH54_2192 enterobacterial EspB family protein K15346 sseD; secreted effector protein SseD
D CH54_336 pertussis toxin, subunit 1 family protein K11023 ptxA; pertussis toxin subunit 1 [EC:2.4.2.-]
D CH54_1199 CBS domain protein K06189 corC; hemolysin (HlyC) family protein
D CH54_1000 lrgA family protein K06518 cidA; holin-like protein
D CH54_2948 lrgA family protein K06518 cidA; holin-like protein
D CH54_941 BMC domain protein K27260 pduA; bacterial microcompartment shell protein
D CH54_3978 MFS/sugar transport family protein K16210 togT; oligogalacturonide transporter
D CH54_4021 amino acid permease family protein K11733 lysP; lysine-specific permease
D CH54_150 amino acid permease family protein K11734 aroP; aromatic amino acid transport protein AroP
D CH54_1758 amino acid permease family protein K11734 aroP; aromatic amino acid transport protein AroP
D CH54_3647 amino acid permease family protein K11736 proY; proline-specific permease ProY
D CH54_743 amino acid permease family protein K11737 cycA; D-serine/D-alanine/glycine transporter
D CH54_721 amino acid permease family protein K11738 ansP; L-asparagine permease
D CH54_2431 amino acid permease family protein K16234 hutT; histidine transporter
D CH54_1249 amino acid permease family protein K14052 puuP; putrescine importer
D CH54_1965 potE; putrescine-ornithine antiporter K03756 potE; putrescine:ornithine antiporter
D CH54_375 transporter, basic amino acid/polyamine antiporter family protein K03758 arcD; arginine:ornithine antiporter / lysine permease
D CH54_1898 transporter, basic amino acid/polyamine antiporter family protein K03758 arcD; arginine:ornithine antiporter / lysine permease
D CH54_140 transporter, basic amino acid/polyamine antiporter family protein K03758 arcD; arginine:ornithine antiporter / lysine permease
D CH54_3093 amino acid permease family protein K20265 gadC; glutamate:GABA antiporter
D CH54_3115 amino acid permease family protein K16263 yjeH; amino acid efflux transporter
D CH54_1125 cation diffusion facilitator transporter family protein K16264 czcD; cobalt-zinc-cadmium efflux system protein
D CH54_2670 cation diffusion facilitator transporter family protein K13283 fieF; ferrous-iron efflux pump FieF
D CH54_3156 heavy metal efflux pump, CzcA family protein K07787 cusA; copper/silver efflux system protein
D CH54_3719 RND transporter, hydrophobe/amphiphile efflux-1 family protein K18138 acrB; multidrug efflux pump
D CH54_3234 RND transporter, hydrophobe/amphiphile efflux-1 family protein K18138 acrB; multidrug efflux pump
D CH54_1328 RND transporter, hydrophobe/amphiphile efflux-1 family protein K18324 acrD; multidrug efflux pump
D CH54_1369 acrB/AcrD/AcrF family protein K07788 mdtB; multidrug efflux pump
D CH54_1370 acrB/AcrD/AcrF family protein K07789 mdtC; multidrug efflux pump
D CH54_357 small Multidrug Resistance family protein K03297 emrE; small multidrug resistance pump
D CH54_2058 small Multidrug Resistance family protein K11741 sugE; quaternary ammonium compound-resistance protein SugE
D CH54_609 small Multidrug Resistance family protein K11742 mdtI; spermidine export protein MdtI
D CH54_610 small Multidrug Resistance family protein K11743 mdtJ; spermidine export protein MdtJ
D CH54_1169 eamA-like transporter family protein K08978 TC.BAT1; bacterial/archaeal transporter family protein
D CH54_1045 eamA-like transporter family protein K11939 rhtA; inner membrane transporter RhtA
D CH54_2786 eamA-like transporter family protein K05786 rarD; chloramphenicol-sensitive protein RarD
D CH54_269 small Multidrug Resistance family protein K12962 arnE; undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnE
D CH54_429 hypothetical protein K09771 TC.SMR3; small multidrug resistance family-3 protein
D CH54_1494 transporter, gluconate:H+ symporter family protein K16321 gntP; high-affinity gluconate transporter
D CH54_2359 transporter, gluconate:H+ symporter family protein K06155 gntT; Gnt-I system high-affinity gluconate transporter
D CH54_2067 transporter, anaerobic C4-dicarboxylate uptake family protein K07791 dcuA; anaerobic C4-dicarboxylate transporter DcuA
D CH54_1609 transporter, anaerobic C4-dicarboxylate uptake family protein K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D CH54_689 chaA; calcium/proton exchanger family protein K07300 chaA; Ca2+:H+ antiporter
D CH54_3017 sodium/calcium exchanger family protein K07301 yrbG; cation:H+ antiporter
D CH54_2383 phosphate transporter family protein K16322 pit; low-affinity inorganic phosphate transporter
D CH54_2961 panF; sodium/pantothenate symporter K14392 panF; sodium/pantothenate symporter
D CH54_753 putP; sodium/proline symporter K11928 putP; sodium/proline symporter
D CH54_2206 actP; cation/acetate symporter ActP K14393 actP; cation/acetate symporter
D CH54_2203 dicarboxylate symporter family protein K11102 gltP; proton glutamate symport protein
D CH54_2401 dicarboxylate symporter family protein K11103 dctA; aerobic C4-dicarboxylate transport protein
D CH54_3082 dicarboxylate symporter family protein K07862 sstT; serine/threonine transporter
D CH54_2577 gltS; sodium/glutamate symporter K03312 gltS; glutamate:Na+ symporter, ESS family
D CH54_190 gltS; sodium/glutamate symporter K03312 gltS; glutamate:Na+ symporter, ESS family
D CH54_1836 nhaA; Na+/H+ antiporter NhaA K03313 nhaA; Na+:H+ antiporter, NhaA family
D CH54_591 nhaB; Na+/H+ antiporter NhaB K03314 nhaB; Na+:H+ antiporter, NhaB family
D CH54_2946 Na+/H+ antiporter K24163 nhaK; monovalent cation/hydrogen antiporter
D CH54_47 trkA-C domain protein K11105 cvrA; potassium/hydrogen antiporter
D CH54_2269 transporter, monovalent cation:proton antiporter-2 family protein K11747 kefB; glutathione-regulated potassium-efflux system protein KefB
D CH54_2270 NADPH-dependent FMN reductase family protein K11748 kefG; glutathione-regulated potassium-efflux system ancillary protein KefG
D CH54_3743 transporter, monovalent cation:proton antiporter-2 family protein K26735 KEA4_5_6; K+:H+ antiporter
D CH54_2856 potassium uptake, TrkH family protein K03498 trkH; trk/ktr system potassium uptake protein
D CH54_2222 ketopantoate reductase PanE/ApbA family protein K03499 trkA; trk/ktr system potassium uptake protein
D CH54_454 permease for cytosine/purine, uracil, thiamine, allantoin family protein K10974 codB; cytosine permease
D CH54_1911 permease for cytosine/purine, uracil, thiamine, allantoin family protein K10974 codB; cytosine permease
D CH54_1912 permease for cytosine/purine, uracil, thiamine, allantoin family protein K10974 codB; cytosine permease
D CH54_1352 uracil-xanthine permease family protein K02824 uraA; uracil permease
D CH54_2576 pbuX; xanthine permease family protein K16345 xanP; xanthine permease XanP
D CH54_2511 permease family protein K06901 pbuG; adenine/guanine/hypoxanthine permease
D CH54_2945 permease family protein K06901 pbuG; adenine/guanine/hypoxanthine permease
D CH54_1279 nucleoside transporter, NupC family protein K11535 nupC; nucleoside transport protein
D CH54_3621 nucleoside transporter, NupC family protein K16324 psuT; putative pseudouridine transporter
D CH54_3958 aromatic amino acid transport family protein K03834 tyrP; tyrosine-specific transport protein
D CH54_4008 aromatic amino acid transport family protein K03835 mtr; tryptophan-specific transport protein
D CH54_4037 stp; serine transporter family protein K03837 sdaC; serine transporter
D CH54_857 transporter, divalent anion:Na+ symporter family protein K09477 citT; citrate:succinate antiporter
D CH54_1719 voltage gated chloride channel family protein K03281 clcA; chloride channel protein, CIC family
D CH54_432 voltage gated chloride channel family protein K03281 clcA; chloride channel protein, CIC family
D CH54_1549 transition metal uptake transporter, Ni2+-Co2+ transporter family protein K07241 hoxN; nickel/cobalt transporter (NiCoT) family protein
D CH54_2522 sulfate transporter family protein K03321 TC.SULP; sulfate permease, SulP family
D CH54_650 sulP; sulfate permease family protein K03321 TC.SULP; sulfate permease, SulP family
D CH54_1277 metal ion transporter, metal ion family protein K03322 mntH; manganese transport protein
D CH54_3239 pNaS; sodium-dependent inorganic phosphate (Pi) transporter family protein K03324 yjbB; phosphate:Na+ symporter
D CH54_421 arsB; arsenite/antimonite efflux pump membrane family protein K03893 arsB; arsenical pump membrane protein
D CH54_990 transporter, anaerobic C4-dicarboxylate uptake C family protein K03326 TC.DCUC; C4-dicarboxylate transporter, DcuC family
D CH54_2758 polysaccharide biosynthesis family protein K16693 wzxE; enterobacterial common antigen flippase
D CH54_636 mviN; murein biosynthesis integral membrane protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase
D CH54_1444 membrane transport family protein K13936 mdcF; malonate transporter and related proteins
D CH54_2830 membrane transport family protein K13936 mdcF; malonate transporter and related proteins
D CH54_2542 kup; potassium uptake protein K03549 kup; KUP system potassium uptake protein
D CH54_3395 lysE; L-lysine exporter family protein K06895 lysE; L-lysine exporter family protein LysE/ArgO
D CH54_2791 lysE type translocator family protein K05834 rhtB; homoserine/homoserine lactone efflux protein
D CH54_2790 homoserine/Threonine efflux family protein K05835 rhtC; threonine efflux protein
D CH54_1825 lysE type translocator family protein K05835 rhtC; threonine efflux protein
D CH54_1254 homoserine/Threonine efflux family protein K03329 yahN; amino acid exporter
D CH54_3570 azlC family protein K26605 azlC; branched chain amino acid efflux pump
D CH54_3569 branched-chain amino acid transport family protein K26606 azlD; branched chain amino acid efflux pump
D CH54_2981 fusaric acid resistance family protein K03468 aaeB; p-hydroxybenzoic acid efflux pump subunit AaeB
D CH54_3255 fusaric acid resistance family protein K15547 mdtO; multidrug resistance protein MdtO
D CH54_1348 hypothetical protein K03548 perM; putative permease
D CH54_2800 hypothetical protein K09125 yhhQ; queuosine precursor transporter
D CH54_243 marC integral membrane family protein K05595 marC; multiple antibiotic resistance protein
D CH54_1780 ftsW; cell division protein FtsW K03588 ftsW; cell division protein FtsW
D CH54_159 hypothetical protein K23242 mntP; manganese efflux pump family protein
D CH54_709 iron permease FTR1 family protein K07243 FTR; high-affinity iron transporter
D CH54_752 iron permease FTR1 family protein K07243 FTR; high-affinity iron transporter
D CH54_751 imelysin family protein K07224 efeO; iron uptake system component EfeO
D CH54_750 Dyp-type peroxidase family protein K16301 efeB; deferrochelatase/peroxidase EfeB [EC:1.11.1.-]
D CH54_708 fe2+ transport family protein K07230 p19; periplasmic iron binding protein
D CH54_1471 high-affinity nickel-transport family protein K08970 rcnA; nickel/cobalt transporter (NicO) family protein
D CH54_537 hypothetical protein K03832 tonB; periplasmic protein TonB
D CH54_2707 hypothetical protein K03832 tonB; periplasmic protein TonB
D CH54_1133 pal; peptidoglycan-associated lipoprotein K03640 pal; peptidoglycan-associated lipoprotein
D CH54_1135 tolA; protein TolA K03646 tolA; colicin import membrane protein
D CH54_1134 tolB; Tol-Pal system beta propeller repeat protein TolB K03641 tolB; TolB protein
D CH54_3881 cytochrome C biogenesis transmembrane region family protein K08344 scsB; suppressor for copper-sensitivity B
D CH54_1635 anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family protein K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]
D CH54_1256 anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family protein K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]
D CH54_1634 dmsB; dimethylsulfoxide reductase, chain B K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B
D CH54_1257 dmsB; dimethylsulfoxide reductase, chain B K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B
D CH54_1633 DMSO reductase anchor subunit family protein K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C
D CH54_1258 DMSO reductase anchor subunit family protein K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C
D CH54_3478 molybdopterin oxidoreductase family protein K08351 bisC; biotin/methionine sulfoxide reductase [EC:1.-.-.-]
D CH54_3567 efflux pump membrane family protein K03543 emrA; membrane fusion protein, multidrug efflux system
D CH54_3254 efflux transporter, RND family, MFP subunit K15549 mdtN; membrane fusion protein, multidrug efflux system
D CH54_2706 type I secretion membrane fusion, HlyD family protein K12537 hasE; membrane fusion protein, type I secretion system
D CH54_3157 efflux transporter, RND family, MFP subunit K07798 cusB; membrane fusion protein, copper/silver efflux system
D CH54_460 type I secretion membrane fusion, HlyD family protein K12532 rtxD; membrane fusion protein, RTX toxin transport system
D CH54_3973 type I secretion membrane fusion, HlyD family protein K12542 lapC; membrane fusion protein, adhesin transport system
D CH54_2350 hlyD secretion family protein K13408 cvaA; membrane fusion protein
D CH54_89 hlyD secretion family protein K13408 cvaA; membrane fusion protein
D CH54_3720 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D CH54_1114 hypothetical protein K25859 acrZ; accessory protein, multidrug efflux pump
D CH54_1368 efflux transporter, RND family, MFP subunit K07799 mdtA; membrane fusion protein, multidrug efflux system
D CH54_4068 efflux transporter, RND family, MFP subunit K13888 macA; membrane fusion protein, macrolide-specific efflux system
D CH54_1664 efflux transporter, RND family, MFP subunit K13888 macA; membrane fusion protein, macrolide-specific efflux system
D CH54_2980 efflux transporter, RND family, MFP subunit K15548 aaeA; p-hydroxybenzoic acid efflux pump subunit AaeA
D CH54_1126 pnuC; nicotinamide mononucleotide transporter PnuC family protein K03811 pnuC; nicotinamide mononucleotide transporter
D CH54_2327 feoA domain protein K04758 feoA; ferrous iron transport protein A
D CH54_2328 feoB; ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B
D CH54_2329 feoC like transcriptional regulator family protein K07490 feoC; ferrous iron transport protein C
D CH54_2384 universal stress B family protein K06144 uspB; universal stress protein B
D CH54_2059 entericidin EcnA/B family protein K16348 ecnB; entericidin B
D CH54_3851 ccmF; cytochrome c-type biogenesis protein CcmF K02198 ccmF; cytochrome c-type biogenesis protein CcmF
D CH54_820 mgtC family protein K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
D CH54_358 mgtC family protein K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
D CH54_181 copper resistance D family protein K07245 pcoD; copper resistance protein D
D CH54_180 copC domain protein K07156 copC; copper resistance protein C
D CH54_579 mltA-interacting MipA family protein K07274 mipA; MipA family protein
C 02044 Secretion system [BR:ykr02044]
D CH54_3121 type I secretion outer membrane, TolC family protein K12340 tolC; outer membrane protein
D CH54_461 type I secretion system ATPase family protein K12530 rtxB; ATP-binding cassette, subfamily B, bacterial RtxB
D CH54_459 type I secretion system ATPase family protein K12531 rtxE; ATP-binding cassette, subfamily B, bacterial RtxE
D CH54_460 type I secretion membrane fusion, HlyD family protein K12532 rtxD; membrane fusion protein, RTX toxin transport system
D CH54_2705 type I secretion system ATPase family protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D CH54_2706 type I secretion membrane fusion, HlyD family protein K12537 hasE; membrane fusion protein, type I secretion system
D CH54_3972 type I secretion system ATPase family protein K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D CH54_3973 type I secretion membrane fusion, HlyD family protein K12542 lapC; membrane fusion protein, adhesin transport system
D CH54_3971 type I secretion outer membrane, TolC family protein K12543 lapE; outer membrane protein, adhesin transport system
D CH54_2350 hlyD secretion family protein K13408 cvaA; membrane fusion protein
D CH54_89 hlyD secretion family protein K13408 cvaA; membrane fusion protein
D CH54_2349 ABC transporter family protein K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D CH54_88 ABC transporter family protein K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D CH54_3455 type IV pilus biogenesis family protein K02452 gspC; general secretion pathway protein C
D CH54_3456 gspD; type II secretion system protein D K02453 gspD; general secretion pathway protein D
D CH54_3457 gspE; type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D CH54_3458 type II secretion system (T2SS), F family protein K02455 gspF; general secretion pathway protein F
D CH54_3459 gspG; type II secretion system protein G K02456 gspG; general secretion pathway protein G
D CH54_3460 gspI; type II secretion system protein I K02458 gspI; general secretion pathway protein I
D CH54_3461 gspJ; type II secretion system protein J K02459 gspJ; general secretion pathway protein J
D CH54_3462 type II secretion system (T2SS), K family protein K02460 gspK; general secretion pathway protein K
D CH54_3463 type II secretion system (T2SS), L family protein K02461 gspL; general secretion pathway protein L
D CH54_3466 type IV leader peptidase family protein K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-]
D CH54_3465 bacterial chaperone lipo family protein K02465 gspS; general secretion pathway protein S
D CH54_1451 pilF; type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF
D CH54_3372 twitching motility family protein K02669 pilT; twitching motility protein PilT
D CH54_3152 type IV leader peptidase family protein K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D CH54_3151 hypothetical protein K02279 cpaB; pilus assembly protein CpaB
D CH54_3150 bacterial type II and III secretion system family protein K02280 cpaC; pilus assembly protein CpaC
D CH54_3148 hypothetical protein K02282 cpaE; pilus assembly protein CpaE
D CH54_3147 type II/IV secretion system family protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D CH54_3146 type II secretion system (T2SS), F family protein K12510 tadB; tight adherence protein B
D CH54_3145 type II secretion system (T2SS), F family protein K12511 tadC; tight adherence protein C
D CH54_3144 tetratricopeptide repeat family protein K12512 tadD; tight adherence protein D
D CH54_3143 tadE-like family protein K12513 tadE; tight adherence protein E
D CH54_3142 hypothetical protein K12514 tadF; tight adherence protein F
D CH54_3141 von Willebrand factor type A domain protein K12515 tadG; tight adherence protein G
D CH54_3488 hypothetical protein K02679 ppdA; prepilin peptidase dependent protein A
D CH54_3489 hypothetical protein K02680 ppdB; prepilin peptidase dependent protein B
D CH54_3491 hypothetical protein K02681 ppdC; prepilin peptidase dependent protein C
D CH54_1762 hypothetical protein K02682 ppdD; prepilin peptidase dependent protein D
D CH54_1763 type II/IV secretion system family protein K02504 hofB; protein transport protein HofB
D CH54_1764 type II secretion system (T2SS), F family protein K02505 hofC; protein transport protein HofC
D CH54_2311 hypothetical protein K12288 hofM; pilus assembly protein HofM
D CH54_2310 fimbrial assembly family protein K12289 hofN; pilus assembly protein HofN
D CH54_2309 hypothetical protein K12290 hofO; pilus assembly protein HofO
D CH54_2308 hypothetical protein K12291 hofP; pilus assembly protein HofP
D CH54_2307 pilQ; type IV pilus secretin PilQ family protein K02507 hofQ; protein transport protein HofQ
D CH54_3369 YGGT family protein K02221 yggT; YggT family protein
D CH54_3692 competence ComEA helix-hairpin-helix repeat region domain protein K02237 comEA; competence protein ComEA
D CH54_4098 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC
D CH54_2199 type III secretion outer membrane pore, YscC/HrcC family K03219 yscC; type III secretion protein C
D CH54_2198 type III secretion apparatus protein, YscD/HrpQ family K03220 yscD; type III secretion protein D
D CH54_2187 eprI; type III secretion apparatus needle protein K03221 yscF; type III secretion protein F
D CH54_2184 type III secretion apparatus lipoprotein, YscJ/HrcJ family K03222 yscJ; type III secretion protein J
D CH54_2178 ATPase, FliI/YscN family protein K03224 yscN; ATP synthase in type III secretion protein N [EC:7.4.2.8]
D CH54_2175 epaO; type III secretion apparatus protein, YscQ/HrcQ family K03225 yscQ; type III secretion protein Q
D CH54_2174 epaP; type III secretion apparatus protein, YscR/HrcR family K03226 yscR; type III secretion protein R
D CH54_2173 type III secretion, HrpO family protein K03227 yscS; type III secretion protein S
D CH54_2172 epaR; type III secretion apparatus protein SpaR/YscT/HrcT K03228 yscT; type III secretion protein T
D CH54_2171 type III secretion, YscU/HrpY family protein K03229 yscU; type III secretion protein U
D CH54_2179 type III secretion, HrcV family protein K03230 yscV; type III secretion protein V
D CH54_802 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D CH54_3178 FHIPEP family protein K02400 flhA; flagellar biosynthesis protein FlhA
D CH54_803 flhB; flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D CH54_3179 flhB HrpN YscU SpaS family protein K02401 flhB; flagellar biosynthesis protein FlhB
D CH54_773 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D CH54_3187 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D CH54_775 flagellar assembly FliH family protein K02411 fliH; flagellar assembly protein FliH
D CH54_3189 hypothetical protein K02411 fliH; flagellar assembly protein FliH
D CH54_776 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D CH54_3190 ATPase, FliI/YscN family protein K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D CH54_781 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D CH54_3183 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D CH54_782 fliO; flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ
D CH54_783 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D CH54_3182 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D CH54_784 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D CH54_3181 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D CH54_785 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D CH54_3180 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D CH54_3350 anion-transporting ATPase family protein K12055 K12055; chromosome partitioning related protein ParA
D CH54_2157 anion-transporting ATPase family protein K12055 K12055; chromosome partitioning related protein ParA
D CH54_2142 traD; conjugative coupling factor TraD, PFGI-1 class K12071 traD; conjugal transfer pilus assembly protein TraD
D CH54_3420 DSBA-like thioredoxin domain protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D CH54_250 outer membrane autotransporter barrel domain protein K12678 aidA-I; autotransporter family porin
D CH54_522 outer membrane autotransporter barrel domain protein K12678 aidA-I; autotransporter family porin
D CH54_3236 outer membrane autotransporter barrel domain protein K12678 aidA-I; autotransporter family porin
D CH54_3654 outer membrane autotransporter barrel domain protein K12678 aidA-I; autotransporter family porin
D CH54_3086 outer membrane autotransporter barrel domain protein K12678 aidA-I; autotransporter family porin
D CH54_2911 hemolysin secretion/activation ShlB/FhaC/HecB family protein K11017 shlB; hemolysin activation/secretion protein
D CH54_2910 hypothetical protein K11016 shlA; hemolysin
D CH54_3277 intracellular multiplication and macrophage-killing family protein K11891 impL; type VI secretion system protein ImpL
D CH54_3334 intracellular multiplication and macrophage-killing family protein K11891 impL; type VI secretion system protein ImpL
D CH54_3261 type IV/VI secretion system, DotU family domain protein K11892 impK; type VI secretion system protein ImpK
D CH54_3319 type IV/VI secretion system, DotU family domain protein K11892 impK; type VI secretion system protein ImpK
D CH54_3260 hypothetical protein K11893 impJ; type VI secretion system protein ImpJ
D CH54_3318 hypothetical protein K11893 impJ; type VI secretion system protein ImpJ
D CH54_3280 hypothetical protein K11895 impH; type VI secretion system protein ImpH
D CH54_3337 hypothetical protein K11895 impH; type VI secretion system protein ImpH
D CH54_3279 hypothetical protein K11896 impG; type VI secretion system protein ImpG
D CH54_3336 hypothetical protein K11896 impG; type VI secretion system protein ImpG
D CH54_3259 hypothetical protein K11900 impC; type VI secretion system protein ImpC
D CH54_3317 hypothetical protein K11900 impC; type VI secretion system protein ImpC
D CH54_3258 hypothetical protein K11901 impB; type VI secretion system protein ImpB
D CH54_3316 hypothetical protein K11901 impB; type VI secretion system protein ImpB
D CH54_3263 type VI secretion system effector, Hcp1 family protein K11903 hcp; type VI secretion system secreted protein Hcp
D CH54_3321 type VI secretion system effector, Hcp1 family protein K11903 hcp; type VI secretion system secreted protein Hcp
D CH54_3265 Rhs element Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG
D CH54_3282 Rhs element Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG
D CH54_3346 phage late control protein K11904 vgrG; type VI secretion system secreted protein VgrG
D CH54_3325 Rhs element Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG
D CH54_3291 lysozyme family protein K11905 K11905; type VI secretion system protein
D CH54_3339 lysozyme family protein K11905 K11905; type VI secretion system protein
D CH54_3281 type VI secretion lipofamily protein K11906 vasD; type VI secretion system protein VasD
D CH54_3338 type VI secretion lipofamily protein K11906 vasD; type VI secretion system protein VasD
D CH54_3264 clpV; type VI secretion ATPase, ClpV1 family K11907 vasG; type VI secretion system protein VasG
D CH54_3322 clpV; type VI secretion ATPase, ClpV1 family K11907 vasG; type VI secretion system protein VasG
D CH54_3278 hypothetical protein K11910 vasJ; type VI secretion system protein VasJ
D CH54_3335 hypothetical protein K11910 vasJ; type VI secretion system protein VasJ
D CH54_3341 hypothetical protein K11911 vasL; type VI secretion system protein VasL
D CH54_3292 hypothetical protein K11911 vasL; type VI secretion system protein VasL
D CH54_897 fimbrial family protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D CH54_2743 hypothetical protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D CH54_2378 fimbrial family protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D CH54_2377 hypothetical protein K07346 fimC; fimbrial chaperone protein
D CH54_207 hypothetical protein K07346 fimC; fimbrial chaperone protein
D CH54_2742 hypothetical protein K07346 fimC; fimbrial chaperone protein
D CH54_2376 hypothetical protein K07347 fimD; outer membrane usher protein
D CH54_206 outer membrane usher family protein K07347 fimD; outer membrane usher protein
D CH54_899 hypothetical protein K07347 fimD; outer membrane usher protein
D CH54_2741 hypothetical protein K07347 fimD; outer membrane usher protein
D CH54_209 spore Coat Protein U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D CH54_205 spore Coat Protein U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D CH54_208 spore Coat Protein U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D CH54_210 spore Coat Protein U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D CH54_1674 hypothetical protein K12518 papC; outer membrane usher protein PapC
D CH54_1673 hypothetical protein K12519 papD; chaperone protein PapD
D CH54_2446 hypothetical protein K12519 papD; chaperone protein PapD
D CH54_1770 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D CH54_2662 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D CH54_3659 secD; export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D CH54_2874 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D CH54_3660 secF; export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D CH54_1983 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D CH54_1771 secretion monitor family protein K13301 secM; secretion monitor
D CH54_2233 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D CH54_1615 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D CH54_2808 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D CH54_3658 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D CH54_2500 yidC; Preprotein translocase subunit YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CH54_2843 tatA; twin arginine-targeting translocase, TatA/E family protein K03116 tatA; sec-independent protein translocase protein TatA
D CH54_2844 tatB; twin arginine-targeting protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB
D CH54_2845 tatC; twin arginine-targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
D CH54_1221 tatA; twin arginine-targeting translocase, TatA/E family protein K03425 tatE; sec-independent protein translocase protein TatE
C 02042 Bacterial toxins [BR:ykr02042]
D CH54_336 pertussis toxin, subunit 1 family protein K11023 ptxA; pertussis toxin subunit 1 [EC:2.4.2.-]
D CH54_2012 CBS domain protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D CH54_1617 CBS domain protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D CH54_2910 hypothetical protein K11016 shlA; hemolysin
D CH54_2911 hemolysin secretion/activation ShlB/FhaC/HecB family protein K11017 shlB; hemolysin activation/secretion protein
D CH54_3411 channel, hemolysin III family protein K11068 hlyIII; hemolysin III
C 02022 Two-component system [BR:ykr02022]
D CH54_3644 phoR; phosphate regulon sensor kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D CH54_3643 phoB; phosphate regulon transcriptional regulatory protein PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D CH54_111 HAMP domain protein K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D CH54_112 hypothetical protein K07660 phoP; two-component system, OmpR family, response regulator PhoP
D CH54_2319 HAMP domain protein K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D CH54_2320 hypothetical protein K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D CH54_372 HAMP domain protein K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3]
D CH54_373 response regulator K07661 rstA; two-component system, OmpR family, response regulator RstA
D CH54_2667 HAMP domain protein K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D CH54_2668 hypothetical protein K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D CH54_3416 HAMP domain protein K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3]
D CH54_3415 hypothetical protein K07663 creB; two-component system, OmpR family, catabolic regulation response regulator CreB
D CH54_1371 HAMP domain protein K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3]
D CH54_1372 response regulator K07664 baeR; two-component system, OmpR family, response regulator BaeR
D CH54_1992 HAMP domain protein K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3]
D CH54_1991 hypothetical protein K07771 basR; two-component system, OmpR family, response regulator BasR
D CH54_1167 universal stress family protein K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D CH54_1168 hypothetical protein K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D CH54_3037 sensory box protein K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D CH54_1849 hypothetical protein K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA
D CH54_1298 HAMP domain protein K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D CH54_1299 response regulator K02483 K02483; two-component system, OmpR family, response regulator
D CH54_686 histidine kinase family protein K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3]
D CH54_1326 bacterial regulatory s, luxR family protein K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP
D CH54_2425 histidine kinase family protein K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D CH54_2426 bacterial regulatory s, luxR family protein K07686 uhpA; two-component system, NarL family, uhpT operon response regulator UhpA
D CH54_867 histidine kinase family protein K20263 fusK; two-component system, NarL family, sensor histidine kinase FusK [EC:2.7.13.3]
D CH54_866 bacterial regulatory s, luxR family protein K20264 fusR; two-component system, NarL family, response regulator FusR
D CH54_3966 rcsC Alpha-Beta-Loop family protein K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D CH54_3968 hpt domain protein K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3]
D CH54_3967 bacterial regulatory s, luxR family protein K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB
D CH54_1711 HAMP domain protein K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D CH54_730 bacterial regulatory s, luxR family protein K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D CH54_2438 bacterial regulatory s, luxR family protein K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3]
D CH54_46 bacterial extracellular solute-binding s, 3 family protein K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3]
D CH54_896 hpt domain protein K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3]
D CH54_517 response regulator K07690 evgA; two-component system, NarL family, response regulator EvgA
D CH54_521 bacterial regulatory s, luxR family protein K07688 fimZ; two-component system, NarL family, response regulator, fimbrial Z protein, FimZ
D CH54_2437 response regulator K07688 fimZ; two-component system, NarL family, response regulator, fimbrial Z protein, FimZ
D CH54_895 bacterial regulatory s, luxR family protein K07688 fimZ; two-component system, NarL family, response regulator, fimbrial Z protein, FimZ
D CH54_864 sensory box protein K07700 dpiB; two-component system, CitB family, cit operon sensor histidine kinase CitA [EC:2.7.13.3]
D CH54_865 response regulator K07702 dpiA; two-component system, CitB family, response regulator CitB
D CH54_718 PAS fold family protein K07701 dcuS; two-component system, CitB family, sensor histidine kinase DcuS [EC:2.7.13.3]
D CH54_719 response regulator K07703 dcuR; two-component system, CitB family, response regulator DcuR
D CH54_2348 histidine kinase family protein K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D CH54_1269 5TMR of 5TMR-LYT family protein K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D CH54_1270 response regulator K02477 K02477; two-component system, LytTR family, response regulator
D CH54_1608 response regulator K02477 K02477; two-component system, LytTR family, response regulator
D CH54_2565 PAS fold family protein K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D CH54_2564 ntrC; nitrogen regulation protein NR K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D CH54_1483 HAMP domain protein K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D CH54_1481 AAA domain family protein K07715 glrR; two-component system, NtrC family, response regulator GlrR
D CH54_812 signal transducing histidine kinase, homodimeric domain protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D CH54_806 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D CH54_807 cheB methylesterase family protein K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D CH54_903 response regulator K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D CH54_2509 bacterial regulatory s, luxR family protein K13041 ttrR; two-component system, LuxR family, response regulator TtrR
D CH54_2201 response regulator K14978 ssrA; two-component system, LuxR family, secretion system sensor histidine kinase SsrA
D CH54_2202 bacterial regulatory s, luxR family protein K14979 ssrB; two-component system, LuxR family, secretion system response regulator SsrB
D CH54_3185 AAA domain family protein K10943 flrC; two-component system, response regulator FlrC
D CH54_557 response regulator K02485 rssB; two-component system, response regulator
C 02035 Bacterial motility proteins [BR:ykr02035]
D CH54_812 signal transducing histidine kinase, homodimeric domain protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D CH54_811 cheW-like domain protein K03408 cheW; purine-binding chemotaxis protein CheW
D CH54_808 methyltransferase domain protein K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D CH54_807 cheB methylesterase family protein K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D CH54_806 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D CH54_805 chemotaxis phosphatase, CheZ family protein K03414 cheZ; chemotaxis protein CheZ
D CH54_903 response regulator K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D CH54_1055 sensory box protein K03406 mcp; methyl-accepting chemotaxis protein
D CH54_1176 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein
D CH54_2506 methyl-accepting chemotaxis (MCP) signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein
D CH54_3980 methyl-accepting chemotaxis (MCP) signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein
D CH54_810 hypothetical protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D CH54_2006 hypothetical protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D CH54_2463 methyl-accepting chemotaxis (MCP) signaling domain protein K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor
D CH54_821 hypothetical protein K05876 trg; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor
D CH54_809 hypothetical protein K05877 tap; methyl-accepting chemotaxis protein IV, peptide sensor receptor
D CH54_126 sensory box protein K03776 aer; aerotaxis receptor
D CH54_775 flagellar assembly FliH family protein K02411 fliH; flagellar assembly protein FliH
D CH54_3189 hypothetical protein K02411 fliH; flagellar assembly protein FliH
D CH54_776 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D CH54_3190 ATPase, FliI/YscN family protein K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D CH54_777 fliJ; flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ
D CH54_782 fliO; flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ
D CH54_783 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D CH54_3182 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D CH54_784 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D CH54_3181 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D CH54_785 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D CH54_3180 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D CH54_802 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D CH54_3178 FHIPEP family protein K02400 flhA; flagellar biosynthesis protein FlhA
D CH54_803 flhB; flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D CH54_3179 flhB HrpN YscU SpaS family protein K02401 flhB; flagellar biosynthesis protein FlhB
D CH54_800 flagellar FlhE family protein K03516 flhE; flagellar protein FlhE
D CH54_774 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D CH54_3188 fliG middle domain protein K02410 fliG; flagellar motor switch protein FliG
D CH54_780 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D CH54_3184 surface presentation of antigens family protein K02416 fliM; flagellar motor switch protein FliM
D CH54_781 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D CH54_3183 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D CH54_773 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D CH54_3187 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D CH54_789 flagellar P-ring family protein K02394 flgI; flagellar P-ring protein FlgI
D CH54_3202 flagellar P-ring family protein K02394 flgI; flagellar P-ring protein FlgI
D CH54_797 flgA; flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D CH54_3194 flgA; flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D CH54_790 flagellar L-ring family protein K02393 flgH; flagellar L-ring protein FlgH
D CH54_3201 flagellar L-ring family protein K02393 flgH; flagellar L-ring protein FlgH
D CH54_779 flagellar basal body-associated FliL family protein K02415 fliL; flagellar protein FliL
D CH54_3214 flagellar basal body-associated FliL family protein K02415 fliL; flagellar protein FliL
D CH54_772 fliE; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D CH54_3186 fliE; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D CH54_778 flagellar hook-length control FliK family protein K02414 fliK; flagellar hook-length control protein FliK
D CH54_3213 flagellar hook-length control FliK family protein K02414 fliK; flagellar hook-length control protein FliK
D CH54_796 flgB; flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D CH54_3195 flgB; flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D CH54_795 flgC; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D CH54_3196 flgC; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D CH54_794 hypothetical protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D CH54_3197 hypothetical protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D CH54_792 flagellar hook-basal body family protein K02391 flgF; flagellar basal-body rod protein FlgF
D CH54_3199 flgF; flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D CH54_791 flgG; flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D CH54_3200 flgG; flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D CH54_788 flgJ; flagellar rod assembly protein/muramidase FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ
D CH54_3203 rod binding family protein K02395 flgJ; peptidoglycan hydrolase FlgJ
D CH54_793 flagellar hook-basal body family protein K02390 flgE; flagellar hook protein FlgE
D CH54_3198 flagellar hook-basal body family protein K02390 flgE; flagellar hook protein FlgE
D CH54_787 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D CH54_3204 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D CH54_786 flgL; flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D CH54_3205 flgL; flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D CH54_799 flgN family protein K02399 flgN; flagellar biosynthesis protein FlgN
D CH54_3192 flgN family protein K02399 flgN; flagellar biosynthesis protein FlgN
D CH54_1357 putative zinc-/iron-chelating domain protein K18475 fliB; lysine-N-methylase [EC:2.1.1.-]
D CH54_764 hypothetical protein K02406 fliC; flagellin
D CH54_3209 hypothetical protein K02406 fliC; flagellin
D CH54_765 flagellar hook-associated family protein K02407 fliD; flagellar hook-associated protein 2
D CH54_3210 flagellar hook-associated family protein K02407 fliD; flagellar hook-associated protein 2
D CH54_766 fliS; flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D CH54_3211 fliS; flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D CH54_767 flagellar FliT family protein K02423 fliT; flagellar protein FliT
D CH54_816 flagellar transcriptional activator family protein K02403 flhD; flagellar transcriptional activator FlhD
D CH54_815 flagellar transcriptional activator family protein K02402 flhC; flagellar transcriptional activator FlhC
D CH54_763 RNA polymerase sigma factor, FliA/WhiG family protein K02405 fliA; RNA polymerase sigma factor FliA
D CH54_3215 RNA polymerase sigma factor, FliA/WhiG family protein K02405 fliA; RNA polymerase sigma factor FliA
D CH54_814 motA; flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA
D CH54_3216 motA; flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA
D CH54_813 membrane MotB of proton-channel complex MotA/MotB family protein K02557 motB; chemotaxis protein MotB
D CH54_3217 membrane MotB of proton-channel complex MotA/MotB family protein K02557 motB; chemotaxis protein MotB
D CH54_3185 AAA domain family protein K10943 flrC; two-component system, response regulator FlrC
D CH54_760 bacterial extracellular solute-binding s, 3 family protein K02424 tcyA; L-cystine transport system substrate-binding protein
D CH54_762 fliZ; flagellar regulatory protein FliZ K02425 fliZ; regulator of sigma S factor FliZ
D CH54_798 flgM; flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D CH54_3193 anti-sigma-28 factor, FlgM family protein K02398 flgM; negative regulator of flagellin synthesis FlgM
D CH54_3372 twitching motility family protein K02669 pilT; twitching motility protein PilT
D CH54_1451 pilF; type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF
D CH54_3152 type IV leader peptidase family protein K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D CH54_3151 hypothetical protein K02279 cpaB; pilus assembly protein CpaB
D CH54_3150 bacterial type II and III secretion system family protein K02280 cpaC; pilus assembly protein CpaC
D CH54_3148 hypothetical protein K02282 cpaE; pilus assembly protein CpaE
D CH54_3147 type II/IV secretion system family protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D CH54_897 fimbrial family protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D CH54_2743 hypothetical protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D CH54_2378 fimbrial family protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D CH54_2377 hypothetical protein K07346 fimC; fimbrial chaperone protein
D CH54_207 hypothetical protein K07346 fimC; fimbrial chaperone protein
D CH54_2742 hypothetical protein K07346 fimC; fimbrial chaperone protein
D CH54_2376 hypothetical protein K07347 fimD; outer membrane usher protein
D CH54_206 outer membrane usher family protein K07347 fimD; outer membrane usher protein
D CH54_899 hypothetical protein K07347 fimD; outer membrane usher protein
D CH54_2741 hypothetical protein K07347 fimD; outer membrane usher protein
D CH54_209 spore Coat Protein U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D CH54_205 spore Coat Protein U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D CH54_208 spore Coat Protein U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D CH54_210 spore Coat Protein U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:ykr04812]
D CH54_2970 cell shape determining, MreB/Mrl family protein K03569 mreB; rod shape-determining protein MreB and related proteins
D CH54_1774 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D CH54_1775 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D CH54_600 minC; septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D CH54_601 minD; septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D CH54_602 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
C 04147 Exosome [BR:ykr04147]
D CH54_3730 hsp90 family protein K04079 HSP90A; molecular chaperone HtpG
D CH54_1707 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D CH54_127 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D CH54_577 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D CH54_3391 phosphoglycerate kinase family protein K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D CH54_291 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D CH54_614 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D CH54_2290 cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD family protein K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D CH54_3651 hypothetical protein K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24]
D CH54_2063 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CH54_1838 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D CH54_2915 phosphoglucose isomerase family protein K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D CH54_1441 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D CH54_2873 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D CH54_2257 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D CH54_94 HIT domain protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D CH54_450 hypothetical protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D CH54_604 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D CH54_1793 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D CH54_3731 adenylate kinase family protein K00939 adk; adenylate kinase [EC:2.7.4.3]
D CH54_3726 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D CH54_2699 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D CH54_912 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D CH54_4033 cys/Met metabolism PLP-dependent enzyme family protein K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D CH54_400 amidinotransferase family protein K01482 DDAH; dimethylargininase [EC:3.5.3.18]
D CH54_2005 fructose-1-6-bisphosphatase family protein K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D CH54_1120 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D CH54_2347 glgB; 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D CH54_2680 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D CH54_2566 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CH54_2847 delta-aminolevulinic acid dehydratase family protein K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D CH54_388 alkaline phosphatase family protein K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D CH54_3399 ACT domain protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D CH54_2896 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D CH54_2708 pyridine nucleotide-disulfide oxidoreductase family protein K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CH54_1754 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CH54_612 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D CH54_2674 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D CH54_1123 phosphoglycerate mutase 1 family protein K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D CH54_2057 lipocalin-like domain protein K03098 APOD; apolipoprotein D and lipocalin family protein
C 02048 Prokaryotic defense system [BR:ykr02048]
D CH54_28 cas1; CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1
D CH54_29 cas3f; CRISPR-associated helicase Cas3, subtype I-F/YPEST K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D CH54_31 csy1; CRISPR type I-F/YPEST-associated protein Csy1 K19127 csy1; CRISPR-associated protein Csy1
D CH54_32 csy2; CRISPR type I-F/YPEST-associated protein Csy2 K19128 csy2; CRISPR-associated protein Csy2
D CH54_33 csy3; CRISPR type I-F/YPEST-associated protein Csy3 K19129 csy3; CRISPR-associated protein Csy3
D CH54_34 cas6f; CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST K19130 csy4; CRISPR-associated endonuclease Csy4 [EC:3.1.-.-]
D CH54_1921 hypothetical protein K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D CH54_1924 hypothetical protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D CH54_1925 N-6 DNA Methylase family protein K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D CH54_2303 dam; DNA adenine methylase family protein K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D CH54_2629 dam; DNA adenine methylase family protein K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D CH54_3053 dcm; DNA (cytosine-5-)-methyltransferase family protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D CH54_1522 type III restriction enzyme, res subunit K01156 res; type III restriction enzyme [EC:3.1.21.5]
D CH54_1523 DNA methylase family protein K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D CH54_1319 addiction module toxin, RelE/StbE family protein K06218 relE; mRNA interferase RelE/StbE
D CH54_185 addiction module toxin, RelE/StbE family protein K06218 relE; mRNA interferase RelE/StbE
D CH54_186 addiction module antitoxin, RelB/DinJ family protein K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
D CH54_1320 antitoxin Phd-YefM, type II toxin-antitoxin system family protein K18923 stbD; antitoxin StbD
D CH54_2450 hypothetical protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D CH54_2943 helix-turn-helix family protein K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D CH54_2453 helix-turn-helix family protein K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D CH54_1264 hypothetical protein K18843 hicB; antitoxin HicB
D CH54_3706 hemolysin expression modulating family protein K05839 hha; haemolysin expression modulating protein
D CH54_3707 biofilm formation regulator YbaJ family protein K19162 tomB; hha toxicity modulator TomB
D CH54_341 pspC; phage shock protein C K03973 pspC; phage shock protein C
D CH54_340 pspB; phage shock protein B K03970 pspB; phage shock protein B
D CH54_1937 yhcH/YjgK/YiaL family protein K19334 tabA; biofilm protein TabA
D CH54_3940 yhcH/YjgK/YiaL family protein K19334 tabA; biofilm protein TabA
D CH54_66 bssS family protein K12148 bssS; biofilm regulator BssS
D CH54_487 hypothetical protein K12151 bhsA; multiple stress resistance protein BhsA
D CH54_1774 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D CH54_2970 cell shape determining, MreB/Mrl family protein K03569 mreB; rod shape-determining protein MreB and related proteins
D CH54_3130 parC; DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D CH54_3126 parE; DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D CH54_1284 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CH54_2093 hypothetical protein K18837 cbtA; cytoskeleton-binding toxin CbtA and related proteins
D CH54_1536 hypothetical protein K18837 cbtA; cytoskeleton-binding toxin CbtA and related proteins
D CH54_3311 hypothetical protein K18837 cbtA; cytoskeleton-binding toxin CbtA and related proteins
D CH54_3310 yagB/YeeU/YfjZ family protein K18838 cbeA; cytoskeleton bundling-enhancing protein CbeA and related proteins
D CH54_3414 hypothetical protein K19168 cptA; toxin CptA
D CH54_3413 flavinator of succinate dehydrogenase family protein K09159 cptB; antitoxin CptB
D CH54_1467 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:ykr01504]
D CH54_411 sugar (and other) transporter family protein K08160 mdfA; MFS transporter, DHA1 family, multidrug/chloramphenicol efflux transport protein
D CH54_2451 sugar (and other) transporter family protein K08160 mdfA; MFS transporter, DHA1 family, multidrug/chloramphenicol efflux transport protein
D CH54_1246 major Facilitator Superfamily protein K08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein
D CH54_3056 pentapeptide repeats family protein K18555 qnr; fluoroquinolone resistance protein
D CH54_111 HAMP domain protein K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D CH54_112 hypothetical protein K07660 phoP; two-component system, OmpR family, response regulator PhoP
D CH54_3720 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D CH54_3719 RND transporter, hydrophobe/amphiphile efflux-1 family protein K18138 acrB; multidrug efflux pump
D CH54_3234 RND transporter, hydrophobe/amphiphile efflux-1 family protein K18138 acrB; multidrug efflux pump
D CH54_3749 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D CH54_3121 type I secretion outer membrane, TolC family protein K12340 tolC; outer membrane protein
D CH54_517 response regulator K07690 evgA; two-component system, NarL family, response regulator EvgA
D CH54_4116 gram-negative porin family protein K09476 ompF; outer membrane pore protein F
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins [BR:ykr00536]
D CH54_1917 hypothetical protein K15125 fhaB; filamentous hemagglutinin
D CH54_1746 hypothetical protein K15125 fhaB; filamentous hemagglutinin
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:ykr00537]
D CH54_388 alkaline phosphatase family protein K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:ykr03100]
D CH54_1285 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CH54_1287 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CH54_2209 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CH54_3557 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CH54_2719 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CH54_3764 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CH54_2763 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CH54_1622 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CH54_1623 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CH54_1624 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CH54_1413 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CH54_3844 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CH54_848 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D CH54_872 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D CH54_902 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D CH54_1584 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D CH54_1595 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D CH54_2722 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D CH54_726 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D CH54_1192 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D CH54_1194 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D CH54_1191 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D CH54_1598 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D CH54_2552 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D CH54_2859 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D CH54_2899 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D CH54_3424 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CH54_2871 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CH54_2045 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CH54_2047 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CH54_727 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CH54_2046 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CH54_2764 tRNA-His K14226 tRNA-His; tRNA His
D CH54_2210 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D CH54_3556 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D CH54_2718 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D CH54_2766 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CH54_1881 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CH54_1880 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CH54_1982 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CH54_1190 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CH54_725 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CH54_1927 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CH54_1128 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CH54_1131 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CH54_1129 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CH54_1280 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CH54_1130 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CH54_742 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CH54_1981 tRNA-Met K14230 tRNA-Met; tRNA Met
D CH54_3500 tRNA-Met K14230 tRNA-Met; tRNA Met
D CH54_3499 tRNA-Met K14230 tRNA-Met; tRNA Met
D CH54_3498 tRNA-Met K14230 tRNA-Met; tRNA Met
D CH54_1189 tRNA-Met K14230 tRNA-Met; tRNA Met
D CH54_1193 tRNA-Met K14230 tRNA-Met; tRNA Met
D CH54_3101 tRNA-Met K14230 tRNA-Met; tRNA Met
D CH54_2081 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D CH54_3356 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D CH54_3987 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D CH54_2422 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D CH54_2767 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D CH54_1625 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CH54_648 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CH54_645 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CH54_27 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CH54_3975 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CH54_2902 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D CH54_2867 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D CH54_3976 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D CH54_2872 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D CH54_2723 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D CH54_563 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D CH54_2869 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D CH54_564 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D CH54_1281 tRNA-Val K14237 tRNA-Val; tRNA Val
D CH54_1282 tRNA-Val K14237 tRNA-Val; tRNA Val
D CH54_1283 tRNA-Val K14237 tRNA-Val; tRNA Val
D CH54_293 tRNA-Val K14237 tRNA-Val; tRNA Val
D CH54_294 tRNA-Val K14237 tRNA-Val; tRNA Val
D CH54_292 tRNA-Val K14237 tRNA-Val; tRNA Val
D CH54_2439 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D CH54_2211 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CH54_2551 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CH54_2717 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CH54_2898 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CH54_2858 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CH54_1599 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CH54_3555 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CH54_2208 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CH54_1597 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CH54_3558 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CH54_2860 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CH54_2720 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CH54_2553 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CH54_2900 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CH54_2554 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CH54_2861 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CH54_2901 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CH54_2721 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CH54_3559 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CH54_1596 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CH54_2207 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CH54_2903 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D CH54_3942 short chain dehydrogenase family protein K00046 idnO; gluconate 5-dehydrogenase [EC:1.1.1.69]
D CH54_3134 aldo/keto reductase family protein K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346]
D CH54_3298 aldo/keto reductase family protein K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346]
D CH54_1594 aldo/keto reductase family protein K06222 dkgB; 2,5-diketo-D-gluconate reductase B [EC:1.1.1.346]
D CH54_3176 3-beta hydroxysteroid dehydrogenase/isomerase family protein K22025 denD; D-erythronate 2-dehydrogenase [EC:1.1.1.410]
D CH54_974 iron-containing alcohol dehydrogenase family protein K08317 hcxA; hydroxycarboxylate dehydrogenase A [EC:1.1.1.-]
D CH54_1544 aldo/keto reductase family protein K19265 gpr; L-glyceraldehyde 3-phosphate reductase [EC:1.1.1.-]
D CH54_1275 aldo/keto reductase family protein K19265 gpr; L-glyceraldehyde 3-phosphate reductase [EC:1.1.1.-]
D CH54_1388 membrane bound FAD containing D-sorbitol dehydrogenase family protein K23274 fdhS; fructose 5-dehydrogenase small subunit [EC:1.1.5.14]
D CH54_1543 NHL repeat family protein K21430 yliI; aldose sugar dehydrogenase [EC:1.1.5.-]
D CH54_3088 flavin oxidoreductase / NADH oxidase family protein K00219 fadH; 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34]
D CH54_65 FAD dependent oxidoreductase family protein K02846 solA; N-methyl-L-tryptophan oxidase [EC:1.5.3.-]
D CH54_2934 zinc-binding dehydrogenase family protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D CH54_826 NAD(P)H quinone oxidoreductase, PIG3 family protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D CH54_892 zinc-binding dehydrogenase family protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D CH54_1859 zinc-binding alcohol dehydrogenase family protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D CH54_3129 flavodoxin-like fold family protein K03923 mdaB; NADPH dehydrogenase (quinone) [EC:1.6.5.10]
D CH54_364 NADPH-dependent FMN reductase family protein K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17]
D CH54_2011 msrA; peptide-methionine (S)-S-oxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D CH54_576 msrB; methionine-R-sulfoxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D CH54_409 hypothetical protein K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-]
D CH54_3067 hypothetical protein K07393 ECM4; glutathionyl-hydroquinone reductase [EC:1.8.5.7]
D CH54_2967 oxidoreductase molybdopterin binding domain protein K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-]
D CH54_1656 cytochrome c family protein K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5]
D CH54_1347 redoxin family protein K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D CH54_348 ahpC/TSA family protein K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D CH54_2428 peroxiredoxin, Ohr subfamily protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]
D CH54_1311 Dyp-type peroxidase family protein K07223 yfeX; porphyrinogen peroxidase [EC:1.11.1.-]
D CH54_2361 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D CH54_584 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D CH54_1476 globin family protein K05916 hmp; nitric oxide dioxygenase [EC:1.14.12.17]
D CH54_179 ferritin-like domain protein K02217 ftnA; ferritin [EC:1.16.3.2]
D CH54_1741 multicopper oxidase family protein K14588 cueO; cuproxidase [EC:1.16.3.4]
D CH54_2677 oxidoreductase NAD-binding domain protein K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D CH54_406 FAD dependent oxidoreductase family protein K12265 norW; nitric oxide reductase FlRd-NAD(+) reductase [EC:1.18.1.-]
D CH54_1350 arsC; arsenate reductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1]
D CH54_422 arsC; arsenate reductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1]
D CH54_1944 4Fe-4S single cluster domain protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]
D CH54_4086 pflA; pyruvate formate-lyase 1-activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D CH54_1804 glycyl-radical enzyme activating family protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D CH54_4063 2Fe-2S iron-sulfur cluster binding domain protein K11933 hcr; NADH oxidoreductase Hcr [EC:1.-.-.-]
D CH54_1008 4Fe-4S dicluster domain protein K12136 hyfA; hydrogenase-4 component A [EC:1.-.-.-]
D CH54_1009 NADH-Ubiquinone/plastoquinone (complex I), various chains family protein K12137 hyfB; hydrogenase-4 component B [EC:1.-.-.-]
D CH54_1010 NADH dehydrogenase family protein K12138 hyfC; hydrogenase-4 component C [EC:1.-.-.-]
D CH54_1011 NADH-Ubiquinone/plastoquinone (complex I), various chains family protein K12139 hyfD; hydrogenase-4 component D [EC:1.-.-.-]
D CH54_1012 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L family protein K12140 hyfE; hydrogenase-4 component E [EC:1.-.-.-]
D CH54_1013 NADH-Ubiquinone/plastoquinone (complex I), various chains family protein K12141 hyfF; hydrogenase-4 component F [EC:1.-.-.-]
D CH54_1014 nickel-dependent hydrogenase family protein K12142 hyfG; hydrogenase-4 component G [EC:1.-.-.-]
D CH54_1016 NADH ubiquinone oxidoreductase, 20 Kd subunit K12144 hyfI; hydrogenase-4 component I [EC:1.-.-.-]
D CH54_1017 formate hydrogenlyase maturation HycH family protein K12145 hyfJ; hydrogenase-4 component J [EC:1.-.-.-]
D CH54_1682 pcm; protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D CH54_297 L-isoaspartate family protein K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D CH54_1050 methyltransferase domain protein K00598 tam; trans-aconitate 2-methyltransferase [EC:2.1.1.144]
D CH54_701 tehB; tellurite resistance protein TehB K16868 tehB; tellurite methyltransferase [EC:2.1.1.265]
D CH54_1889 carbamoyltransferase family protein K00612 nodU; carbamoyltransferase [EC:2.1.3.-]
D CH54_49 acyltransferase family protein K11941 mdoC; glucans biosynthesis protein C [EC:2.1.-.-]
D CH54_1200 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D CH54_1966 acetyltransferase family protein K03824 yhbS; putative acetyltransferase [EC:2.3.1.-]
D CH54_2476 acetyltransferase family protein K03826 yiaC; putative acetyltransferase [EC:2.3.1.-]
D CH54_1934 acetyltransferase domain protein K03828 yjgM; putative acetyltransferase [EC:2.3.1.-]
D CH54_559 acetyltransferase domain protein K03829 yedL; putative acetyltransferase [EC:2.3.1.-]
D CH54_4074 aat; leucyl/phenylalanyl-tRNA--protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D CH54_3563 DTW domain protein K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25]
D CH54_3486 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D CH54_953 cob(I)alamin adenosyltransferase K27270 pduO; corrinoid adenosyltransferase [EC:2.5.1.-]
D CH54_3589 apbE family protein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D CH54_716 hypothetical protein K21948 otnK; 3-dehydrotetronate 4-kinase [EC:2.7.1.217]
D CH54_278 kinase/pyrophosphorylase family protein K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33]
D CH54_3113 glutamate-ammonia ligase adenylyltransferase family protein K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D CH54_273 hypothetical protein K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108]
D CH54_2907 isocitrate dehydrogenase kinase/phosphatase family protein K00906 aceK; isocitrate dehydrogenase kinase/phosphatase [EC:2.7.11.5 3.1.3.-]
D CH54_3162 hypothetical protein K07214 fes; iron(III)-enterobactin esterase [EC:3.1.1.108]
D CH54_1138 ybgC; tol-pal system-associated acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D CH54_524 PHP domain protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D CH54_3860 sixA; phosphohistidine phosphatase SixA K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D CH54_4114 EAL domain protein K26148 K26148; c-di-GMP phosphodiesterase [EC:3.1.4.52]
D CH54_4000 EAL domain protein K26148 K26148; c-di-GMP phosphodiesterase [EC:3.1.4.52]
D CH54_3379 endonuclease I family protein K01150 endA; deoxyribonuclease I [EC:3.1.21.1]
D CH54_85 hydrolase, TatD family protein K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D CH54_1870 tatD related DNase family protein K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D CH54_2846 tatD related DNase family protein K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D CH54_1173 PGAP1-like family protein K01175 ybfF; esterase [EC:3.1.-.-]
D CH54_3614 alpha/beta hydrolase family protein K11750 frsA; esterase FrsA [EC:3.1.-.-]
D CH54_2406 glycosyl hydrolases 8 family protein K20542 bcsZ; endoglucanase [EC:3.2.1.4]
D CH54_3806 phage lysozyme family protein K01185 E3.2.1.17; lysozyme [EC:3.2.1.17]
D CH54_394 N-acetylmuramoyl-L-alanine amidase family protein K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CH54_2219 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D CH54_1537 ydjC-like family protein K03478 chbG; chitin disaccharide deacetylase [EC:3.5.1.105]
D CH54_173 ASCH domain protein K09900 E3.5.1.135; N4-acetylcytidine amidohydrolase [EC:3.5.1.135]
D CH54_3003 reactive intermediate/imine deaminase family protein K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D CH54_3112 CYTH domain protein K18446 ygiF; triphosphatase [EC:3.6.1.25]
D CH54_3696 HAD hydrolase, IIB family protein K11938 cof; HMP-PP phosphatase [EC:3.6.1.-]
D CH54_1318 nudix-type nucleoside diphosphatase, YffH/AdpP family protein K12945 nudK; GDP-mannose pyrophosphatase NudK [EC:3.6.1.-]
D CH54_72 maf; septum formation protein Maf K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-]
D CH54_2541 AAA domain family protein K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D CH54_715 hypothetical protein K22130 otnC; 3-dehydro-4-phosphotetronate decarboxylase [EC:4.1.1.104]
D CH54_480 fsa; fructose-6-phosphate aldolase K08313 fsaA; fructose-6-phosphate aldolase 1 [EC:4.1.2.-]
D CH54_2043 yjeF-related family protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D CH54_3595 pyridoxal-phosphate dependent enzyme family protein K22589 thadh; threo-3-hydroxy-L-aspartate ammonia-lyase [EC:4.3.1.16]
D CH54_3504 csdA; cysteine desulfurase, catalytic subunit CsdA K01766 csdA; cysteine sulfinate desulfinase [EC:4.4.1.-]
D CH54_744 mutarotase, YjhT family protein K17948 nanM; N-acetylneuraminate epimerase [EC:5.1.3.24]
D CH54_1382 sugar isomerase, KpsF/GutQ family protein K02467 gutQ; arabinose 5-phosphate isomerase [EC:5.3.1.13]
D CH54_714 xylose isomerase-like TIM barrel family protein K22131 otnI; 2-dehydrotetronate isomerase [EC:5.3.1.35]
D CH54_2004 mpl; L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45]
D CH54_468 electron transport complex, RnfABCDGE type, D subunit K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2]
D CH54_466 electron transport complex, RnfABCDGE type, C subunit K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2]
D CH54_465 electron transport complex, RnfABCDGE type, B subunit K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
D CH54_3583 nqrA; ubiquinone oxidoreductase, Na(+)-translocating, A subunit K00346 nqrA; Na+-transporting NADH:ubiquinone oxidoreductase subunit A [EC:7.2.1.1]
D CH54_3584 nqrB; ubiquinone oxidoreductase, Na(+)-translocating, B subunit K00347 nqrB; Na+-transporting NADH:ubiquinone oxidoreductase subunit B [EC:7.2.1.1]
D CH54_3585 nqrC; ubiquinone oxidoreductase, Na(+)-translocating, C subunit K00348 nqrC; Na+-transporting NADH:ubiquinone oxidoreductase subunit C [EC:7.2.1.1]
D CH54_3586 nqrD; ubiquinone oxidoreductase, Na(+)-translocating, D subunit K00349 nqrD; Na+-transporting NADH:ubiquinone oxidoreductase subunit D [EC:7.2.1.1]
D CH54_3587 nqrE; ubiquinone oxidoreductase, Na(+)-translocating, E subunit K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1]
D CH54_3588 nqrF; ubiquinone oxidoreductase, Na(+)-translocating, F subunit K00351 nqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:7.2.1.1]
D CH54_2802 cadA; cadmium-translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
D CH54_819 mgtA; magnesium-translocating P-type ATPase K01531 mgtA; P-type Mg2+ transporter [EC:7.2.2.14]
D CH54_2999 mgtA; magnesium-translocating P-type ATPase K01531 mgtA; P-type Mg2+ transporter [EC:7.2.2.14]
C 99981 Carbohydrate metabolism
D CH54_1727 sfsA; sugar fermentation stimulation protein K06206 sfsA; sugar fermentation stimulation protein A
D CH54_2364 xylose isomerase-like TIM barrel family protein K06605 iolH; myo-inositol catabolism protein IolH
D CH54_946 diol dehydratase reactivase alpha subunit K27264 pduG; propanediol dehydratase-reactivating factor large subunit
D CH54_947 dehydratase medium subunit K27265 pduH; propanediol dehydratase-reactivating factor small subunit
C 99982 Energy metabolism
D CH54_2461 formate dehydrogenase family accessory protein FdhD K02379 fdhD; FdhD protein
D CH54_1461 fdx; ferredoxin, 2Fe-2S type, ISC system K04755 fdx; ferredoxin, 2Fe-2S
D CH54_3961 2Fe-2S iron-sulfur cluster binding domain protein K11107 yfaE; ferredoxin
D CH54_469 electron transport complex, RnfABCDGE type, G subunit K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G
D CH54_470 electron transport complex, RnfABCDGE type, E subunit K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E
D CH54_464 electron transport complex, RnfABCDGE type, A subunit K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A
D CH54_1019 4Fe-4S dicluster domain protein K05796 hydN; electron transport protein HydN
D CH54_2071 4Fe-4S dicluster domain protein K05796 hydN; electron transport protein HydN
D CH54_2536 flavodoxin family protein K06205 mioC; MioC protein
D CH54_3418 flavodoxin K03840 fldB; flavodoxin II
D CH54_1015 4Fe-4S dicluster domain protein K12143 hyfH; hydrogenase-4 component H
D CH54_1466 iscU; FeS cluster assembly scaffold IscU K04488 iscU; nitrogen fixation protein NifU and related proteins
D CH54_2987 cytochrome b562 family protein K15536 cybC; soluble cytochrome b562
D CH54_407 flavodoxin family protein K12264 norV; anaerobic nitric oxide reductase flavorubredoxin
D CH54_1324 napD family protein K02570 napD; periplasmic nitrate reductase NapD
D CH54_1325 napF; ferredoxin-type protein NapF K02572 napF; ferredoxin-type protein NapF
D CH54_41 ccmF; cytochrome c-type biogenesis protein CcmF K04016 nrfE; cytochrome c-type biogenesis protein NrfE
D CH54_43 cytochrome C biogenesis family protein K04017 nrfF; formate-dependent nitrite reductase complex subunit NrfF
D CH54_44 tetratricopeptide repeat family protein K04018 nrfG; formate-dependent nitrite reductase complex subunit NrfG
D CH54_1177 flavodoxin K03839 fldA; flavodoxin I
D CH54_1321 periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family protein K02569 napC; cytochrome c-type protein NapC
D CH54_38 nrfB; cytochrome c nitrite reductase, pentaheme subunit K04013 nrfB; cytochrome c-type protein NrfB
D CH54_39 nrfC; cytochrome c nitrite reductase, Fe-S protein K04014 nrfC; protein NrfC
D CH54_40 nrfD; cytochrome c nitrite reductase, NrfD subunit K04015 nrfD; protein NrfD
C 99983 Lipid metabolism
D CH54_2029 hypothetical protein K09456 aidB; putative acyl-CoA dehydrogenase
C 99984 Nucleotide metabolism
D CH54_1578 nrdI; nrdI protein K03647 nrdI; protein involved in ribonucleotide reduction
C 99985 Amino acid metabolism
D CH54_1293 etoposide-induced 2.4 family protein K06203 cysZ; CysZ protein
D CH54_959 eutP; ethanolamine utilization protein, EutP K04029 eutP; ethanolamine utilization protein EutP
D CH54_958 BMC domain protein K04031 eutS; ethanolamine utilization protein EutS
D CH54_3540 glyoxalase/Bleomycin resistance/Dioxygenase superfamily protein K08234 yaeR; glyoxylase I family protein
D CH54_349 zinc carboxypeptidase family protein K14054 mpaA; murein peptide amidase A
D CH54_3371 hypothetical protein K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
D CH54_490 hypothetical protein K08992 lapA; lipopolysaccharide assembly protein A
D CH54_489 tetratricopeptide repeat family protein K19804 lapB; lipopolysaccharide assembly protein B
D CH54_2407 bacterial cellulose synthase subunit K20541 bcsB; cellulose synthase operon protein B
C 99987 Cofactor metabolism
D CH54_2769 tetratricopeptide repeat family protein K02498 hemY; HemY protein
D CH54_2842 ubiB; 2-polyprenylphenol 6-hydroxylase K03688 ubiB; ubiquinone biosynthesis protein
D CH54_2841 SCP-2 sterol transfer family protein K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ
D CH54_3116 membrane fusogenic activity family protein K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK
D CH54_1968 SCP-2 sterol transfer family protein K24843 ubiT; O2-independent ubiquinone biosynthesis accessory factor UbiT
D CH54_2555 mobB; molybdopterin-guanine dinucleotide biosynthesis protein B K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein
D CH54_3237 abgT transporter family protein K12942 abgT; aminobenzoyl-glutamate transport protein
D CH54_956 electron transport complex, RnfABCDGE type, C subunit K27271 pduS; cobalamin reductase
C 99988 Secondary metabolism
D CH54_3132 multicopper oxidase family protein K04753 sufI; suppressor of ftsI
D CH54_2507 NADPH-dependent FMN reductase family protein K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone)
C 99999 Others
D CH54_57 doxX family protein K15977 K15977; putative oxidoreductase
D CH54_3068 doxX family protein K15977 K15977; putative oxidoreductase
D CH54_1339 phospholipase/Carboxylesterase family protein K06999 K06999; phospholipase/carboxylesterase
D CH54_3562 acetyltransferase family protein K09181 yfiQ; acetyltransferase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D CH54_1380 glucitol operon activator family protein K02466 gutM; glucitol operon activator protein
D CH54_2984 barstar family protein K03623 yhcO; ribonuclease inhibitor
D CH54_4070 cspD; cold shock domain protein CspD K03704 cspA; cold shock protein
D CH54_823 'Cold-shock' DNA-binding domain protein K03704 cspA; cold shock protein
D CH54_4102 'Cold-shock' DNA-binding domain protein K03704 cspA; cold shock protein
D CH54_1224 'Cold-shock' DNA-binding domain protein K03704 cspA; cold shock protein
D CH54_1567 'Cold-shock' DNA-binding domain protein K03704 cspA; cold shock protein
D CH54_152 'Cold-shock' DNA-binding domain protein K03704 cspA; cold shock protein
D CH54_2954 'Cold-shock' DNA-binding domain protein K03704 cspA; cold shock protein
D CH54_2955 'Cold-shock' DNA-binding domain protein K03704 cspA; cold shock protein
D CH54_2888 regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ family protein K07740 rsd; regulator of sigma D
D CH54_3701 nitrogen regulatory P-II family protein K04752 glnK; nitrogen regulatory protein P-II 2
D CH54_2326 S1 RNA binding domain protein K06959 tex; protein Tex
C 99974 Translation
C 99975 Protein processing
D CH54_4071 ATP-dependent Clp protease adaptor ClpS family protein K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D CH54_3685 tig; trigger factor K03545 tig; trigger factor
D CH54_2966 ferric reductase like transmembrane component family protein K17247 msrQ; methionine sulfoxide reductase heme-binding subunit
D CH54_2456 fdhE; formate dehydrogenase accessory protein FdhE K02380 fdhE; FdhE protein
D CH54_1554 hypothetical protein K03187 ureE; urease accessory protein
D CH54_1553 ureF family protein K03188 ureF; urease accessory protein
D CH54_1552 ureG; urease accessory protein UreG K03189 ureG; urease accessory protein
D CH54_1551 ureD urease accessory family protein K03190 ureD; urease accessory protein
D CH54_1518 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein
D CH54_1006 hypC; hydrogenase assembly chaperone HypC/HupF K04653 hypC; hydrogenase expression/formation protein HypC
D CH54_3227 hypC; hydrogenase assembly chaperone HypC/HupF K04653 hypC; hydrogenase expression/formation protein HypC
D CH54_3228 hypD; hydrogenase expression/formation protein HypD K04654 hypD; hydrogenase expression/formation protein HypD
D CH54_3229 hypE; hydrogenase expression/formation protein HypE K04655 hypE; hydrogenase expression/formation protein HypE
D CH54_3230 hypF; carbamoyltransferase HypF K04656 hypF; hydrogenase maturation protein HypF
D CH54_1577 nrdH; glutaredoxin-like NrdH family protein K06191 nrdH; glutaredoxin-like protein NrdH
D CH54_2726 sigma-54 interaction domain protein K07391 comM; magnesium chelatase family protein
D CH54_3471 DSBA-like thioredoxin domain protein K07396 K07396; putative protein-disulfide isomerase
D CH54_2283 osmC-like family protein K07397 yhfA; putative redox protein
D CH54_2333 nifU-like domain protein K07400 nfuA; Fe/S biogenesis protein NfuA
D CH54_2196 hypothetical protein K15367 sseA; secretion system chaperone SseA
D CH54_2197 putative type III secretion apparatus K18984 ssaE; secretion system chaperone SsaE
D CH54_2194 type III secretion low calcium response chaperone LcrH/SycD K15368 sscA; secretion system chaperone SscA
C 99976 Replication and repair
D CH54_3705 methylated-DNA--[]-cysteine S-methyltransferase family protein K07443 ybaZ; methylated-DNA-protein-cysteine methyltransferase related protein
D CH54_3509 hypothetical protein K01146 xni; protein Xni
D CH54_1910 HNH endonuclease family protein K07454 K07454; putative restriction endonuclease
D CH54_2645 DNA repair RadC family protein K03630 radC; DNA repair protein RadC
D CH54_1535 DNA repair RadC family protein K03630 radC; DNA repair protein RadC
D CH54_3313 DNA repair RadC family protein K03630 radC; DNA repair protein RadC
D CH54_2839 rmuC family protein K09760 rmuC; DNA recombination protein RmuC
D CH54_4066 AAA domain protein K07459 ybjD; putative ATP-dependent endonuclease of the OLD family
D CH54_2090 AAA domain protein K07459 ybjD; putative ATP-dependent endonuclease of the OLD family
D CH54_3042 hypothetical protein K07460 yraN; putative endonuclease
D CH54_1967 GIY-YIG catalytic domain protein K07461 K07461; putative endonuclease
D CH54_2218 dprA; DNA protecting protein DprA K04096 smf; DNA processing protein
D CH54_384 gyrI-like small molecule binding domain protein K07470 sbmC; DNA gyrase inhibitor
D CH54_1416 terminase small subunit K07474 xtmA; phage terminase small subunit
D CH54_3811 terminase small subunit K07474 xtmA; phage terminase small subunit
D CH54_3812 phage terminase large subunit K06909 xtmB; phage terminase large subunit
D CH54_4083 sigma-54 interaction domain protein K07478 ycaJ; putative ATPase
D CH54_2216 regulatory, FmdB family domain protein K07479 yrdD; putative DNA topoisomerase
D CH54_3438 zinc-binding domain of primase-helicase family protein K06919 K06919; putative DNA primase/helicase
D CH54_423 integrase core domain protein K18320 IS15; transposase, IS6 family
D CH54_427 integrase core domain protein K18320 IS15; transposase, IS6 family
D CH54_508 transposase family protein K07483 K07483; transposase
D CH54_3354 transposase family protein K07483 K07483; transposase
D CH54_553 transposase family protein K07483 K07483; transposase
D CH54_2105 transposase family protein K07483 K07483; transposase
D CH54_192 transposase family protein K07483 K07483; transposase
D CH54_1922 transposase family protein K07483 K07483; transposase
D CH54_2148 transposase family protein K07483 K07483; transposase
D CH54_3428 transposase family protein K07483 K07483; transposase
D CH54_844 transposase family protein K07486 K07486; transposase
D CH54_249 transposase, Mutator family protein K07493 K07493; putative transposase
D CH54_3353 integrase core domain protein K07497 K07497; putative transposase
D CH54_509 integrase core domain protein K07497 K07497; putative transposase
D CH54_552 integrase core domain protein K07497 K07497; putative transposase
D CH54_1923 integrase core domain protein K07497 K07497; putative transposase
D CH54_3429 integrase core domain protein K07497 K07497; putative transposase
D CH54_191 integrase core domain protein K07497 K07497; putative transposase
D CH54_2147 integrase core domain protein K07497 K07497; putative transposase
D CH54_2104 integrase core domain protein K07497 K07497; putative transposase
C 99979 Viral proteins
C 99998 Others
D CH54_339 pspA; phage shock protein A K03969 pspA; phage shock protein A
D CH54_342 phage shock PspD family protein K03971 pspD; phage shock protein D
D CH54_3728 DNA-binding protein, YbaB/EbfC family K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D CH54_3845 formate/nitrite transporter family protein K21990 yfdC; formate-nitrite transporter family protein
D CH54_2762 amino acid permease family protein K03293 TC.AAT; amino acid transporter, AAT family
D CH54_620 amino acid/peptide transporter family protein K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D CH54_55 amino acid/peptide transporter family protein K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D CH54_328 amino acid/peptide transporter family protein K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D CH54_3646 brnQ; branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family
D CH54_2912 sodium Bile acid symporter family protein K03453 TC.BASS; bile acid:Na+ symporter, BASS family
D CH54_425 permease for cytosine/purine, uracil, thiamine, allantoin family protein K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family
D CH54_1869 nucleoside transporter, NupC family protein K03317 TC.CNT; concentrative nucleoside transporter, CNT family
D CH54_2952 transporter, divalent anion:Na+ symporter family protein K03319 TC.DASS; divalent anion:Na+ symporter, DASS family
D CH54_4042 AspT/YidE/YbjL antiporter duplication domain protein K07085 K07085; putative transport protein
D CH54_2484 AspT/YidE/YbjL antiporter duplication domain protein K07085 K07085; putative transport protein
C 99978 Cell growth
D CH54_535 ispZ; intracellular septation protein A K06190 ispZ; intracellular septation protein
D CH54_2799 putative lipoprotein K27311 dcrB; inner membrane lipoprotein DcrB
D CH54_2018 ric; iron-sulfur cluster repair di-iron protein K07322 ytfE; regulator of cell morphogenesis and NO signaling
D CH54_589 spoVR like family protein K06415 spoVR; stage V sporulation protein R
D CH54_2658 peptidase M23 family protein K22719 envC; murein hydrolase activator
C 99993 Cell motility
D CH54_96 hypothetical protein K07337 K07337; penicillin-binding protein activator
D CH54_14 hypothetical protein K07343 tfoX; DNA transformation protein and related proteins
D CH54_3512 syd family protein K15723 syd; SecY interacting protein Syd
C 99995 Signaling proteins
D CH54_1759 hypothetical protein K03807 ampE; AmpE protein
D CH54_216 proQ/FINO family protein K03607 proQ; ProP effector
D CH54_2385 universal stress family protein K06149 uspA; universal stress protein A
D CH54_817 universal stress family protein K14064 uspC; universal stress protein C
D CH54_379 universal stress family protein K14055 uspE; universal stress protein E
D CH54_478 carbon starvation CstA family protein K06200 cstA; carbon starvation protein
D CH54_2837 carbon starvation CstA family protein K06200 cstA; carbon starvation protein
D CH54_2567 typA; GTP-binding protein TypA/BipA K06207 typA; GTP-binding protein
D CH54_690 phoH-like family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D CH54_1197 phoH-like family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D CH54_580 hypothetical protein K07180 prkA; serine protein kinase
D CH54_3111 bacterial SH3 domain protein K07184 ygiM; SH3 domain protein
D CH54_1864 bacterial virulence factor hemolysin family protein K07186 smp; membrane protein
D CH54_3674 hypothetical protein K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
D CH54_4082 lolA; outer membrane lipocarrier protein LolA K03634 lolA; outer membrane lipoprotein carrier protein
D CH54_657 lolB; outer membrane lipoprotein LolB K02494 lolB; outer membrane lipoprotein LolB
D CH54_3855 vacJ like lipofamily protein K04754 mlaA; phospholipid-binding lipoprotein MlaA
D CH54_2751 chain length determinant family protein K05790 wzzE; lipopolysaccharide biosynthesis protein WzzE
D CH54_318 glycine zipper 2TM domain protein K06077 slyB; outer membrane lipoprotein SlyB
D CH54_3218 glycine zipper 2TM domain protein K06077 slyB; outer membrane lipoprotein SlyB
D CH54_2956 glycine zipper 2TM domain protein K06077 slyB; outer membrane lipoprotein SlyB
D CH54_3529 outer membrane family protein K06142 hlpA; outer membrane protein
D CH54_1681 lysM domain protein K06194 nlpD; lipoprotein NlpD
D CH54_665 lysM domain protein K12943 ygeR; lipoprotein YgeR
D CH54_1973 tetratricopeptide repeat family protein K05803 nlpI; lipoprotein NlpI
D CH54_532 ompW family protein K07275 ompW; outer membrane protein
D CH54_1610 hypothetical protein K07283 ydiY; putative salt-induced outer membrane protein
D CH54_605 outer membrane lipo, Slp family protein K07285 slp; outer membrane lipoprotein
D CH54_3683 hypothetical protein K07286 yajG; uncharacterized lipoprotein
D CH54_991 asmA family protein K07289 asmA; AsmA protein
D CH54_2396 asmA family protein K07290 yhjG; AsmA family protein
D CH54_3750 hypothetical protein K07340 ybbJ; inner membrane protein
D CH54_3058 hlyD secretion family protein K01993 ABC-2.TX; HlyD family secretion protein
D CH54_1035 efflux transporter, RND family, MFP subunit K02005 ABC.CD.TX; HlyD family secretion protein
D CH54_62 hypothetical protein K11744 tqsA; AI-2 transport protein TqsA
D CH54_484 glycine zipper 2TM domain protein K04062 osmB; osmotically inducible lipoprotein OsmB
D CH54_3417 inner membrane CreD family protein K06143 creD; inner membrane protein
D CH54_3850 ccmE family protein K02197 ccmE; cytochrome c-type biogenesis protein CcmE
D CH54_3853 cytochrome C biogenesis family protein K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D CH54_1450 helix-turn-helix family protein K15539 rodZ; cytoskeleton protein RodZ
D CH54_2979 hypothetical protein K21695 aaeX; protein AaeX
D CH54_3090 hypothetical protein K21908 hdeD; membrane protein HdeD
D CH54_942 pduB; microcompartment protein PduB K27263 pduB; bacterial microcompartment shell protein
D CH54_948 BMC domain protein K27266 pduJ; bacterial microcompartment shell protein
D CH54_949 BMC domain protein K27267 pduK; bacterial microcompartment shell protein
D CH54_951 pduM; microcompartment protein PduM K27268 pduM; bacterial microcompartment assembly protein
D CH54_952 ethanolamine utilization EutN/carboxysome family protein K27269 pduN; bacterial microcompartment shell vertex protein
D CH54_957 BMC domain protein K27272 pduT; bacterial microcompartment shell protein
C 99994 Others
D CH54_2517 phoU; phosphate transport system regulatory protein PhoU K02039 phoU; phosphate transport system protein
D CH54_2256 BFD-like [2Fe-2S] binding domain protein K02192 bfd; bacterioferritin-associated ferredoxin
D CH54_50 periplasmic glucan biosynthesis, MdoG family protein K03670 mdoG; periplasmic glucans biosynthesis protein
D CH54_2068 cutA1 divalent ion tolerance family protein K03926 cutA; periplasmic divalent cation tolerance protein
D CH54_633 cutC family protein K06201 cutC; copper homeostasis protein
D CH54_1950 phnK; phosphonate C-P lyase system protein PhnK K05781 phnK; putative phosphonate transport system ATP-binding protein
D CH54_1818 hypothetical protein K06195 apaG; ApaG protein
D CH54_2774 cyaY; iron donor protein CyaY K06202 cyaY; iron-sulfur cluster assembly protein CyaY
D CH54_275 hemin-degrading HemS.ChuX domain protein K07225 hmuS; putative hemin transport protein
D CH54_2161 hemin-degrading HemS.ChuX domain protein K07225 hmuS; putative hemin transport protein
D CH54_3722 dsrE/DsrF-like family protein K06039 ychN; uncharacterized protein involved in oxidation of intracellular sulfur
B
B 09194 Poorly characterized
C 99996 General function prediction only
D CH54_3898 colicin V production family protein K03558 cvpA; membrane protein required for colicin V production
D CH54_3273 hypothetical protein K03791 K03791; putative chitinase
D CH54_4 mce related family protein K06192 pqiB; paraquat-inducible protein B
D CH54_637 oxidoreductase, NAD-binding Rossmann fold family protein K03810 mviM; virulence factor
D CH54_3560 hypothetical protein K05811 yfiM; putative lipoprotein
D CH54_1873 BON domain protein K04065 osmY; hyperosmotically inducible periplasmic protein
D CH54_643 PHP domain protein K04477 ycdX; putative hydrolase
D CH54_1510 grcA; autonomous glycyl radical cofactor GrcA K06866 grcA; autonomous glycyl radical cofactor
D CH54_558 patatin-like phospholipase family protein K07001 K07001; NTE family protein
D CH54_1718 iron-sulfur cluster assembly accessory family protein K15724 erpA; iron-sulfur cluster insertion protein
D CH54_283 iron-sulfur cluster assembly accessory family protein K05997 sufA; Fe-S cluster assembly protein SufA
D CH54_284 sufB; FeS assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB
D CH54_286 sufD; FeS assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD
D CH54_225 hypothetical protein K07038 K07038; inner membrane protein
D CH54_2569 yihY; YihY family inner membrane domain protein K07058 K07058; membrane protein
D CH54_2394 yhjD; inner membrane protein YhjD K07058 K07058; membrane protein
D CH54_2065 fxsA cytoplasmic membrane family protein K07113 fxsA; UPF0716 protein FxsA
D CH54_288 fe-S metabolism associated domain protein K02426 sufE; cysteine desulfuration protein SufE
D CH54_3502 csdE; cysteine desulfurase, sulfur acceptor subunit CsdE K02426 sufE; cysteine desulfuration protein SufE
D CH54_61 rhodanese-like domain protein K07146 K07146; UPF0176 protein
D CH54_115 hypothetical protein K07153 hflD; high frequency lysogenization protein
D CH54_698 fhuF; siderophore-iron reductase FhuF K13255 fhuF; ferric iron reductase protein FhuF
D CH54_2266 slyX family protein K03745 slyX; SlyX protein
D CH54_2217 hypothetical protein K03747 smg; Smg protein
D CH54_1850 creA family protein K05805 creA; CreA protein
D CH54_3380 sprT-like family protein K02742 sprT; SprT protein
D CH54_3897 sporulation related domain protein K03749 dedD; DedD protein
D CH54_2304 sporulation related domain protein K03112 damX; DamX protein
D CH54_1005 hypothetical protein K03748 sanA; SanA protein
D CH54_3892 hypothetical protein K03975 dedA; membrane-associated protein
D CH54_3 integral membrane, PqiA family protein K03808 pqiA; paraquat-inducible protein A
D CH54_214 integral membrane, PqiA family protein K03808 pqiA; paraquat-inducible protein A
D CH54_3948 hypothetical protein K05594 elaB; ElaB protein
D CH54_344 hypothetical protein K08990 ycjF; putative membrane protein
D CH54_2806 hypothetical protein K08993 yhhL; putative membrane protein
D CH54_560 SEC-C motif family protein K09858 K09858; SEC-C motif domain protein
D CH54_3704 type III secretion system lipochaperone family protein K09914 K09914; putative lipoprotein
D CH54_2922 maltose operon periplasmic family protein K05775 malM; maltose operon periplasmic protein
D CH54_2916 phosphate-starvation-inducible E family protein K13256 psiE; protein PsiE
D CH54_1233 phnA family protein K06193 phnA; protein PhnA
C 99997 Function unknown
D CH54_1037 radical SAM additional 4Fe4S-binding SPASM domain protein K06871 K06871; uncharacterized protein
D CH54_90 xyeB; radical SAM/SPASM domain peptide maturase, XyeB family K06871 K06871; uncharacterized protein
D CH54_2027 dienelactone hydrolase family protein K06889 K06889; uncharacterized protein
D CH54_1095 inhibitor of apoptosis-promoting Bax1 family protein K06890 K06890; uncharacterized protein
D CH54_2608 lysozyme family protein K06903 W; Bacteriophage baseplate protein W
D CH54_723 phage late control protein K06905 D; Bacteriophage probable baseplate hub protein
D CH54_2598 phage late control protein K06905 D; Bacteriophage probable baseplate hub protein
D CH54_2599 phage P2 GpU family protein K06906 gpU; phage tail protein
D CH54_2603 phage tail sheath family protein K06907 FI; Bacteriophage tail sheath protein
D CH54_2602 phage major tail tube protein K06908 FII; Bacteriophage tail tube protein
D CH54_343 hypothetical protein K06918 K06918; uncharacterized protein
D CH54_21 coA binding domain protein K06929 K06929; uncharacterized protein
D CH54_311 hypothetical protein K06938 K06938; uncharacterized protein
D CH54_4010 putative zinc-/iron-chelating domain protein K06940 K06940; uncharacterized protein
D CH54_224 dicarboxylate symporter family protein K06956 K06956; uncharacterized protein
D CH54_405 zinc carboxypeptidase family protein K06987 K06987; uncharacterized protein
D CH54_327 glyoxalase-like domain protein K06996 K06996; uncharacterized protein
D CH54_99 hypothetical protein K07000 K07000; uncharacterized protein
D CH54_3125 hypothetical protein K07000 K07000; uncharacterized protein
D CH54_1201 pyridoxamine 5'-phosphate oxidase, FMN-binding family protein K07006 K07006; uncharacterized protein
D CH54_3988 type I phosphodiesterase / nucleotide pyrophosphatase family protein K07014 K07014; uncharacterized protein
D CH54_2280 alpha/beta hydrolase family protein K07019 K07019; uncharacterized protein
D CH54_1839 GPR1/FUN34/yaaH family protein K07034 K07034; uncharacterized protein
D CH54_1342 neutral zinc metallopeptidase family protein K07054 K07054; uncharacterized protein
D CH54_2268 hypothetical protein K07070 K07070; uncharacterized protein
D CH54_3905 rmlD substrate binding domain protein K07071 K07071; uncharacterized protein
D CH54_3865 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein
D CH54_3358 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein
D CH54_3907 phosphodiesterase, family protein K07095 K07095; uncharacterized protein
D CH54_2015 hypothetical protein K07109 K07109; uncharacterized protein
D CH54_3382 sulfur transport family protein K07112 K07112; uncharacterized protein
D CH54_3383 sulfur transport family protein K07112 K07112; uncharacterized protein
D CH54_2170 sulfur transport family protein K07112 K07112; uncharacterized protein
D CH54_3043 lppC lipofamily protein K07121 K07121; uncharacterized protein
D CH54_630 MAPEG family protein K07136 K07136; uncharacterized protein
D CH54_3036 radical SAM superfamily protein K07139 K07139; uncharacterized protein
D CH54_4122 MOSC domain protein K07140 K07140; MOSC domain-containing protein
D CH54_1027 hypothetical protein K07148 K07148; uncharacterized protein
D CH54_248 hypothetical protein K07150 K07150; uncharacterized protein
D CH54_2499 putative membrane protein insertion efficiency factor K08998 K08998; uncharacterized protein
D CH54_3368 hypothetical protein K09131 K09131; uncharacterized protein
D CH54_1218 hypothetical protein K09158 K09158; uncharacterized protein
D CH54_595 putative zinc-/iron-chelating domain protein K09160 K09160; uncharacterized protein
D CH54_3916 yfbU domain protein K09161 K09161; uncharacterized protein
D CH54_1316 hypothetical protein K09768 K09768; uncharacterized protein
D CH54_538 YCII-related domain protein K09780 K09780; uncharacterized protein
D CH54_581 hypothetical protein K09786 K09786; uncharacterized protein
D CH54_3725 hypothetical protein K09790 K09790; uncharacterized protein
D CH54_4103 trm112p-like family protein K09791 K09791; uncharacterized protein
D CH54_2657 divergent polysaccharide deacetylase family protein K09798 K09798; uncharacterized protein
D CH54_1516 rnfH Ubiquitin family protein K09801 K09801; uncharacterized protein
D CH54_968 hypothetical protein K09802 K09802; uncharacterized protein
D CH54_3396 hypothetical protein K09807 K09807; uncharacterized protein
D CH54_4067 hypothetical protein K09824 virK; uncharacterized protein
D CH54_3590 hypothetical protein K05952 K05952; uncharacterized protein
D CH54_5 hypothetical protein K09857 K09857; uncharacterized protein
D CH54_1845 hypothetical protein K09861 K09861; uncharacterized protein
D CH54_1768 hypothetical protein K09862 K09862; uncharacterized protein
D CH54_2892 hypothetical protein K09891 K09891; uncharacterized protein
D CH54_2562 der GTPase activator family protein K09894 K09894; uncharacterized protein
D CH54_3402 yecA family protein K09895 K09895; uncharacterized protein
D CH54_2557 hypothetical protein K09896 K09896; uncharacterized protein
D CH54_2725 hypothetical protein K09897 K09897; uncharacterized protein
D CH54_2281 hypothetical protein K09898 K09898; uncharacterized protein
D CH54_3915 hypothetical protein K09899 K09899; uncharacterized protein
D CH54_543 hypothetical protein K09901 K09901; uncharacterized protein
D CH54_598 ycgL domain protein K09902 K09902; uncharacterized protein
D CH54_3989 hypothetical protein K09904 K09904; uncharacterized protein
D CH54_634 yecM family protein K09907 K09907; uncharacterized protein
D CH54_3027 hypothetical protein K09908 K09908; uncharacterized protein
D CH54_20 hypothetical protein K09909 K09909; uncharacterized protein
D CH54_1747 hypothetical protein K09910 K09910; uncharacterized protein
D CH54_11 organizer of macrodomain of Terminus of chromosome family protein K09911 K09911; uncharacterized protein
D CH54_259 hypothetical protein K09912 K09912; uncharacterized protein
D CH54_638 hypothetical protein K09915 K09915; uncharacterized protein
D CH54_575 hypothetical protein K09916 K09916; uncharacterized protein
D CH54_169 hypothetical protein K09917 K09917; uncharacterized protein
D CH54_172 yebG family protein K09918 K09918; uncharacterized protein
D CH54_3123 hypothetical protein K09920 K09920; uncharacterized protein
D CH54_2777 hypothetical protein K09921 K09921; uncharacterized protein
D CH54_3363 hypothetical protein K09923 K09923; uncharacterized protein
D CH54_2034 hypothetical protein K09937 K09937; uncharacterized protein
D CH54_1373 hypothetical protein K09946 K09946; uncharacterized protein
D CH54_1290 hypothetical protein K09954 K09954; uncharacterized protein
D CH54_3813 hypothetical protein K09961 K09961; uncharacterized protein
D CH54_1288 hypothetical protein K09962 K09962; uncharacterized protein
D CH54_3747 utp13 specific WD40 associated domain protein K09973 K09973; uncharacterized protein
D CH54_671 hutD family protein K09975 K09975; uncharacterized protein
D CH54_363 hypothetical protein K09978 K09978; uncharacterized protein
D CH54_1956 hypothetical protein K09979 K09979; uncharacterized protein
D CH54_539 transcription factor zinc-finger family protein K09981 K09981; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 6, 2024