+D GENES KO
#
KEGG Orthology (KO) - Yersinia pestis Harbin 35 (biovar Medievalis)
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:yph00010]
D YPC_1418 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D YPC_0033 pgi; glucosephosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D YPC_0240 pfkA; 6-phosphofructokinase I K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D YPC_0587 fbp; fructose-1,6-bisphosphatase I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D YPC_0251 Fructose-1,6-bisphosphatase, GlpX type K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D YPC_0882 fbaA; fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D YPC_4465 putative class-II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D YPC_0247 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D YPC_2157 gapA; glyceraldehyde-3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D YPC_0881 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D YPC_1188 gpmA; phosphoglyceromutase 1 K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D YPC_4135 ytjC; phosphoglyceromutase 2, co-factor independent K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D YPC_0224 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D YPC_3700 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D YPC_2025 pykF; pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40]
D YPC_2250 pykA; pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40]
D YPC_2043 pps; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D YPC_3755 aceE; transketolase K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D YPC_3754 aceF; pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D YPC_0298 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPC_3752 lpd; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPC_1963 nifJ; putative pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D YPC_2652 Alcohol dehydrogenase class III;Glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D YPC_1802 adhE; NADP-dependent alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D YPC_0757 acs; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D YPC_1190 Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D YPC_4224 yihX; phosphatase K20866 yihX; glucose-1-phosphatase [EC:3.1.3.10]
D YPC_3172 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D YPC_2158 yeaD; conserved protein K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15]
D YPC_0074 pck; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D YPC_0104 putative glycosyl hydrolase K01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D YPC_2947 bglA; 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D YPC_1390 crr; glucose-specific enzyme IIA component of PTS K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D YPC_1707 ptsG; PTS system, glucose-specific IIBC component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
C 00020 Citrate cycle (TCA cycle) [PATH:yph00020]
D YPC_1161 gltA; citrate synthase GltA K01647 CS; citrate synthase [EC:2.3.3.1]
D YPC_1851 acnA; aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D YPC_3748 acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D YPC_1743 icd; 3-isopropylmalate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D YPC_1166 sucA; 2-oxoglutarate decarboxylase, thiamin-requiring K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D YPC_1167 sucB; dihydrolipoyltranssuccinase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D YPC_0298 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPC_3752 lpd; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPC_1169 sucD; succinyl-CoA synthetase, NAD(P)-binding, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D YPC_1168 sucC; succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D YPC_1164 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D YPC_1165 sdhB; succinate dehydrogenase, FeS subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D YPC_1163 sdhD; succinate dehydrogenase, membrane subunit, binds cytochrome b556 K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D YPC_0642 frdA; fumarate reductase flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D YPC_0643 frdB; electron transport complex protein RnfC K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D YPC_0644 frdC; fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C
D YPC_0645 frdD; fumarate reductase subunit D K00247 frdD; succinate dehydrogenase subunit D
D YPC_3653 fumA; fumarate hydratase, class I K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D YPC_1896 fumC; aspartate ammonia-lyase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D YPC_0582 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D YPC_0074 pck; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D YPC_3755 aceE; transketolase K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D YPC_3754 aceF; pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D YPC_1963 nifJ; putative pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
C 00030 Pentose phosphate pathway [PATH:yph00030]
D YPC_0033 pgi; glucosephosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D YPC_2248 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D YPC_1205 6-phosphogluconolactonase K07404 pgl; 6-phosphogluconolactonase [EC:3.1.1.31]
D YPC_2609 gnd; gluconate-6-phosphate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D YPC_0091 rpe; D-ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D YPC_0877 tktA; transketolase 1 K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D YPC_4124 talB; transaldolase B K00616 TALDO1; transaldolase [EC:2.2.1.2]
D YPC_2902 putative ribose 5-phosphate isomerase K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D YPC_0888 rpiA; ribose 5-phosphate isomerase, constitutive K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D YPC_3671 rpiB; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D YPC_4155 deoC; 2-deoxyribose-5-phosphate aldolase, NAD(P)-linked K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D YPC_4393 putative deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D YPC_2863 putative deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D YPC_0008 rbsK; ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D YPC_4395 putative carbohydrate kinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D YPC_4152 deoB; phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D YPC_3172 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D YPC_3803 phnN; PhnN protein K05774 phnN; ribose 1,5-bisphosphokinase [EC:2.7.4.23]
D YPC_2306 prsA; phosphoribosylpyrophosphate synthase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D YPC_1586 edd; phosphogluconate dehydratase K01690 edd; phosphogluconate dehydratase [EC:4.2.1.12]
D YPC_2247 eda; 2-dehydro-3-deoxyphosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D YPC_4599 ghrB; D-isomer specific 2-hydroxyacid dehydrogenase family protein K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D YPC_4455 putative gluconokinase K00851 idnK; gluconokinase [EC:2.7.1.12]
D YPC_1575 idnK; putative thermosensitive gluconokinase K00851 idnK; gluconokinase [EC:2.7.1.12]
D YPC_4499 kdgK; ketodeoxygluconokinase K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
D YPC_0882 fbaA; fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D YPC_4465 putative class-II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D YPC_0587 fbp; fructose-1,6-bisphosphatase I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D YPC_0251 Fructose-1,6-bisphosphatase, GlpX type K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D YPC_0240 pfkA; 6-phosphofructokinase I K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C 00040 Pentose and glucuronate interconversions [PATH:yph00040]
D YPC_4175 putative pectinesterase K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11]
D YPC_4503 pelY; periplasmic pectate lyase precursor K01728 pel; pectate lyase [EC:4.2.2.2]
D YPC_2093 kdgC; exopolygalacturonate lyase K01731 pelW; pectate disaccharide-lyase [EC:4.2.2.9]
D YPC_2104 ogl; oligogalacturonate lyase K01730 ogl; oligogalacturonide lyase [EC:4.2.2.6]
D YPC_2090 Pectin degradation protein kdgF K26933 kdgF; unsaturated pyranuronate lyase [EC:4.2.99.25]
D YPC_2091 kduI; 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase K01815 kduI; 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [EC:5.3.1.17]
D YPC_2092 kduD; 2-deoxy-D-gluconate 3-dehydrogenase K00065 kduD; 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase [EC:1.1.1.127]
D YPC_4094 uxaC; uronate isomerase K01812 uxaC; glucuronate isomerase [EC:5.3.1.12]
D YPC_4095 uxaB; altronate oxidoreductase K00041 uxaB; tagaturonate reductase [EC:1.1.1.58]
D YPC_4096 uxaA; altronate hydrolase K01685 uxaA; altronate hydrolase [EC:4.2.1.7]
D YPC_2911 uxuA; mannonate hydrolase K01686 uxuA; mannonate dehydratase [EC:4.2.1.8]
D YPC_2913 putative D-mannonate oxidoreductase K00040 uxuB; fructuronate reductase [EC:1.1.1.57]
D YPC_2610 galF; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YPC_2611 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YPC_3652 lyxK; putative L-xylulose kinase K00880 lyxK; L-xylulokinase [EC:2.7.1.53]
D YPC_3651 sgbU; putative hexulose-6-phosphate isomerase K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]
D YPC_3643 L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D YPC_1860 araD; L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D YPC_0091 rpe; D-ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D YPC_1884 araA; L-arabinose isomerase K01804 araA; L-arabinose isomerase [EC:5.3.1.4]
D YPC_1885 araB; L-ribulokinase K00853 araB; L-ribulokinase [EC:2.7.1.16]
D YPC_2903 putative carbohydrate kinase K00854 xylB; xylulokinase [EC:2.7.1.17]
D YPC_4552 xylB; xylulokinase K00854 xylB; xylulokinase [EC:2.7.1.17]
D YPC_4551 xylA; D-xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D YPC_0674 rhaB; rhamnulokinase K00848 rhaB; rhamnulokinase [EC:2.7.1.5]
D YPC_0676 rhaD; rhamnulose-1-phosphate aldolase K01629 rhaD; rhamnulose-1-phosphate aldolase [EC:4.1.2.19]
D YPC_1954 dalD; putative mannitol dehydrogenase K00007 dalD; D-arabinitol 4-dehydrogenase [EC:1.1.1.11]
D YPC_4466 ATP synthase delta chain K09988 lyxA; D-lyxose ketol-isomerase [EC:5.3.1.15]
D YPC_4375 putative carbohydrate kinase K00875 rbtK; D-ribulokinase [EC:2.7.1.47]
C 00051 Fructose and mannose metabolism [PATH:yph00051]
D YPC_3495 mak; N-acetylmannosamine kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D YPC_1895 manA; mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D YPC_1649 manB2; phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D YPC_3379 manB; phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D YPC_3381 manC; mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D YPC_3382 GDP-L-fucose synthetase; Colanic acidbiosynthesis protein wcaG K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D YPC_2580 putative racemase K18334 fucD; L-fuconate dehydratase [EC:4.2.1.68]
D YPC_2582 putative oxidoreductase K18335 E1.1.1.434; 2-dehydro-3-deoxy-L-fuconate 4-dehydrogenase [EC:1.1.1.434]
D YPC_2581 putative hydrolase K18336 lra6; 2,4-didehydro-3-deoxy-L-rhamnonate hydrolase [EC:3.7.1.26]
D YPC_0675 rhaA; L-rhamnose isomerase K01813 rhaA; L-rhamnose isomerase [EC:5.3.1.14]
D YPC_0674 rhaB; rhamnulokinase K00848 rhaB; rhamnulokinase [EC:2.7.1.5]
D YPC_0676 rhaD; rhamnulose-1-phosphate aldolase K01629 rhaD; rhamnulose-1-phosphate aldolase [EC:4.1.2.19]
D YPC_0240 pfkA; 6-phosphofructokinase I K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D YPC_0587 fbp; fructose-1,6-bisphosphatase I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D YPC_0251 Fructose-1,6-bisphosphatase, GlpX type K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D YPC_4587 mtlD; mannitol-1-phosphate 5-dehydrogenase K00009 mtlD; mannitol-1-phosphate 5-dehydrogenase [EC:1.1.1.17]
D YPC_2893 fruK; fructose-1-phosphate kinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D YPC_4551 xylA; D-xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D YPC_1954 dalD; putative mannitol dehydrogenase K00007 dalD; D-arabinitol 4-dehydrogenase [EC:1.1.1.11]
D YPC_0882 fbaA; fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D YPC_4465 putative class-II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D YPC_0247 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D YPC_3671 rpiB; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D YPC_2892 fruA; PTS system, fructose-specific IIBC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D YPC_2524 mannose-specific PTS enzyme K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D YPC_2525 manY; mannose-specific enzyme IIC component of PTS K02795 manY; mannose PTS system EIIC component
D YPC_2526 manZ; mannose-specific enzyme IID component of PTS K02796 manZ; mannose PTS system EIID component
D YPC_4588 mtlA; PTS system, mannitol-specific IIABC component K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D YPC_1551 yfbT; sugar phosphatase K19270 hxpA; mannitol-1-/sugar-/sorbitol-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50]
D YPC_2087 2-deoxyglucose-6-phosphate hydrolase YniC K24204 hxpB; mannitol-1-/sugar-/sorbitol-6-/2-deoxyglucose-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50 3.1.3.68]
C 00052 Galactose metabolism [PATH:yph00052]
D YPC_1190 Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D YPC_1192 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D YPC_1193 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D YPC_1194 galE; UDP-glucose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D YPC_2610 galF; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YPC_2611 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YPC_3172 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D YPC_1418 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D YPC_1761 lacZ; beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D YPC_0961 ganB; beta-galactosidase K12308 bgaB; beta-galactosidase [EC:3.2.1.23]
D YPC_2558 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D YPC_0240 pfkA; 6-phosphofructokinase I K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D YPC_0973 agaY; putative aldolase K08302 gatY-kbaY; tagatose 1,6-diphosphate aldolase GatY/KbaY [EC:4.1.2.40]
D YPC_0987 agaZ; putative tagatose 6-phosphate kinase K16371 gatZ-kbaZ; D-tagatose-1,6-bisphosphate aldolase subunit GatZ/KbaZ
D YPC_0967 putative glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D YPC_3486 malZ; putative maltodextrin glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D YPC_0982 putative PTS permease protein K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D YPC_0985 manX; putative PTS transport protein K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-]
D YPC_0981 putative acetylglucosamine-6-phosphate deacetylase K02079 agaA; N-acetylgalactosamine-6-phosphate deacetylase [EC:3.5.1.25]
D YPC_0986 putative phosphosugar isomerase K02082 agaS; D-galactosamine 6-phosphate deaminase/isomerase [EC:3.5.99.-]
C 00053 Ascorbate and aldarate metabolism [PATH:yph00053]
D YPC_1542 phosphotransferase enzyme II, A component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D YPC_1540 hypothetical protein K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D YPC_1538 putative membrane protein K03475 ulaA; ascorbate PTS system EIIC component
D YPC_3651 sgbU; putative hexulose-6-phosphate isomerase K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]
D YPC_3643 L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D YPC_1860 araD; L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D YPC_3652 lyxK; putative L-xylulose kinase K00880 lyxK; L-xylulokinase [EC:2.7.1.53]
C 00500 Starch and sucrose metabolism [PATH:yph00500]
D YPC_0967 putative glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D YPC_3486 malZ; putative maltodextrin glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D YPC_2610 galF; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YPC_2611 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YPC_3325 bglB; putative beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D YPC_3963 putative glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D YPC_3178 celC; PTS system, cellobiose-specific IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D YPC_3180 celA; PTS system, cellobiose-specific IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D YPC_3179 celB; PTS system, cellobiose-specific IIC component K02761 celB; cellobiose PTS system EIIC component
D YPC_0104 putative glycosyl hydrolase K01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D YPC_2947 bglA; 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D YPC_3394 ddhA; glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D YPC_4439 Glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D YPC_4437 glgA; glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21]
D YPC_4441 glgB; 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D YPC_4436 glgP; glycogen phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D YPC_4440 glgX; putative alpha-amylase K02438 glgX; glycogen debranching enzyme [EC:3.2.1.196]
D YPC_4600 malS; alpha-amylase protein K01176 AMY; alpha-amylase [EC:3.2.1.1]
D YPC_0060 malQ; 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D YPC_1390 crr; glucose-specific enzyme IIA component of PTS K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D YPC_4307 treB; PTS system, trehalose-specific IIBC component K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D YPC_4308 treC; putative trehalose-6-phosphate hydrolase K01226 treC; trehalose-6-phosphate hydrolase [EC:3.2.1.93]
D YPC_3172 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D YPC_1418 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D YPC_0033 pgi; glucosephosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D YPC_3495 mak; N-acetylmannosamine kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:yph00520]
D YPC_1715 nagZ; beta-N-acetylglucosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D YPC_1390 crr; glucose-specific enzyme IIA component of PTS K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D YPC_3238 nagE; pts system, N-acetylglucosamine-specific IIABC component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D YPC_1729 Latent glucokinase ycfX K00884 NAGK; N-acetylglucosamine kinase [EC:2.7.1.59]
D YPC_3240 nagA; N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D YPC_3239 nagB; glucosamine-6-phosphate deaminase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6]
D YPC_3495 mak; N-acetylmannosamine kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D YPC_4642 glmS; L-glutamine:D-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D YPC_0565 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D YPC_4643 glmU; 3-deoxy-manno-octulosonate cytidylyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D YPC_3123 putative glucokinase protein K07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126]
D YPC_2002 anmK; anhydro-N-acetylmuramic acid kinase K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
D YPC_4283 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D YPC_1358 putative sugar kinase K00885 nanK; N-acylmannosamine kinase [EC:2.7.1.60]
D YPC_1356 N-acetylmannosamine-6-phosphate 2-epimerase K01788 nanE; N-acylglucosamine-6-phosphate 2-epimerase [EC:5.1.3.9]
D YPC_1355 putative N-acetylneuraminate lyase K01639 E4.1.3.3; N-acetylneuraminate lyase [EC:4.1.3.3]
D YPC_0358 rffE; UDP-N-acetyl glucosamine-2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D YPC_0359 rffD; UDP-N-acetyl-D-mannosamine dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
D YPC_2055 bifunctional UDP-L-Ara4N formyltransferase/UDP-GlcA C-4'-decarboxylase K10011 arnA; UDP-4-amino-4-deoxy-L-arabinose formyltransferase / UDP-glucuronic acid dehydrogenase (UDP-4-keto-hexauronic acid decarboxylating) [EC:2.1.2.13 1.1.1.305]
D YPC_2057 arnB; UDP-4-amino-4-deoxy-L-arabinose alpha-ketoglutarate aminotransferase K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87]
D YPC_2056 arnC; Undecaprenyl-phosphate 4-amino-4-deoxy-L-arabinose transferase K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53]
D YPC_2054 yfbH; conserved protein K13014 arnD; undecaprenyl phosphate-alpha-L-ara4FN deformylase [EC:3.5.1.-]
D YPC_1707 ptsG; PTS system, glucose-specific IIBC component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
D YPC_1418 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D YPC_3172 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D YPC_2610 galF; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YPC_2611 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YPC_1192 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D YPC_1193 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D YPC_1194 galE; UDP-glucose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D YPC_2524 mannose-specific PTS enzyme K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D YPC_2525 manY; mannose-specific enzyme IIC component of PTS K02795 manY; mannose PTS system EIIC component
D YPC_2526 manZ; mannose-specific enzyme IID component of PTS K02796 manZ; mannose PTS system EIID component
D YPC_0033 pgi; glucosephosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D YPC_1895 manA; mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D YPC_1649 manB2; phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D YPC_3379 manB; phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D YPC_3381 manC; mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D YPC_3382 GDP-L-fucose synthetase; Colanic acidbiosynthesis protein wcaG K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D YPC_3394 ddhA; glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D YPC_3393 UDP-glucose 4-epimerase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45]
D YPC_3392 ddhC; putative CDP-4-keto-6-deoxy-D-glucose-3-dehydratase K12452 ascC; CDP-4-dehydro-6-deoxyglucose reductase, E1 [EC:1.17.1.1]
D YPC_3395 Na+-translocating NADH-quinone reductase subunit F K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1]
D YPC_3391 prt; paratose synthase K12453 rfbS; CDP-paratose synthetase [EC:1.1.1.342]
D YPC_4439 Glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
C 00620 Pyruvate metabolism [PATH:yph00620]
D YPC_0757 acs; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D YPC_1963 nifJ; putative pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D YPC_3755 aceE; transketolase K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D YPC_3754 aceF; pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D YPC_0298 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPC_3752 lpd; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPC_2789 pflB; formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D YPC_1802 adhE; NADP-dependent alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D YPC_2652 Alcohol dehydrogenase class III;Glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D YPC_1547 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D YPC_1545 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D YPC_2025 pykF; pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40]
D YPC_2250 pykA; pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40]
D YPC_1099 accA; acetyl-CoA carboxylase, carboxytransferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D YPC_4348 accB; acetyl CoA carboxylase, BCCP subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D YPC_4349 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D YPC_1521 accD; acetyl-CoA carboxylase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D YPC_2713 yccX; acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D YPC_2578 lldD; L-lactate dehydrogenase K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3]
D YPC_2826 poxB; pyruvate dehydrogenase K00156 poxB; pyruvate dehydrogenase (quinone) [EC:1.2.5.1]
D YPC_1958 ldhA; fermentative D-lactate dehydrogenase, NAD-dependent K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28]
D YPC_3037 dld; D-lactate dehydrogenase K03777 dld; D-lactate dehydrogenase (quinone) [EC:1.1.5.12]
D YPC_2011 gloA; glyoxalase I, Ni-dependent K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D YPC_1125 gloB; putative hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D YPC_2758 ycbL; putative metal-binding enzyme K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D YPC_4599 ghrB; D-isomer specific 2-hydroxyacid dehydrogenase family protein K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D YPC_2642 sfcA; NAD-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D YPC_1344 maeB; malic enzyme predicted oxidoreductase and predicted phosphotransacetylase K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D YPC_0582 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D YPC_3653 fumA; fumarate hydratase, class I K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D YPC_1896 fumC; aspartate ammonia-lyase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D YPC_0642 frdA; fumarate reductase flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D YPC_0643 frdB; electron transport complex protein RnfC K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D YPC_0644 frdC; fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C
D YPC_0645 frdD; fumarate reductase subunit D K00247 frdD; succinate dehydrogenase subunit D
D YPC_0287 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D YPC_0074 pck; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D YPC_2043 pps; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D YPC_0021 aceB; malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9]
D YPC_4045 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:yph00630]
D YPC_0022 aceA; isocitrate lyase K01637 E4.1.3.1; isocitrate lyase [EC:4.1.3.1]
D YPC_0757 acs; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D YPC_0021 aceB; malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9]
D YPC_0582 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D YPC_1161 gltA; citrate synthase GltA K01647 CS; citrate synthase [EC:2.3.3.1]
D YPC_1851 acnA; aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D YPC_3748 acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D YPC_3004 katA; catalase K03781 katE; catalase [EC:1.11.1.6]
D YPC_4599 ghrB; D-isomer specific 2-hydroxyacid dehydrogenase family protein K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D YPC_0092 gph; phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D YPC_4226 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D YPC_3105 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D YPC_0900 gcvP; glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D YPC_0898 gcvT; glycine cleavage system aminomethyltransferase T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D YPC_0298 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPC_3752 lpd; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPC_0899 gcvH; glycine cleavage complex lipoylprotein K02437 gcvH; glycine cleavage system H protein
D YPC_4488 glxK; putative glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D YPC_1629 tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83]
D YPC_2247 eda; 2-dehydro-3-deoxyphosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D YPC_4574 fdoH; formate dehydrogenase-O, iron-sulfur subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D YPC_4573 fdoI; formate dehydrogenase, cytochrome b556 protein K00127 fdoI; formate dehydrogenase subunit gamma
D YPC_2138 Formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D YPC_2352 hutG; putative N-formylglutamate amidohydrolase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68]
C 00640 Propanoate metabolism [PATH:yph00640]
D YPC_0757 acs; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D YPC_1547 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D YPC_1545 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D YPC_0298 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPC_3752 lpd; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPC_2789 pflB; formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D YPC_4344 yhdH; sulfite reductase K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-]
D YPC_0474 fadB; fatty acid oxidation complex alpha subunit K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D YPC_1498 putative fatty oxidation complex alpha subunit, enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D YPC_1099 accA; acetyl-CoA carboxylase, carboxytransferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D YPC_4348 accB; acetyl CoA carboxylase, BCCP subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D YPC_4349 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D YPC_1521 accD; acetyl-CoA carboxylase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D YPC_1277 goaG; putative aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D YPC_1168 sucC; succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D YPC_1169 sucD; succinyl-CoA synthetase, NAD(P)-binding, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D YPC_3300 putative aldehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D YPC_3748 acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D YPC_2720 mgsA; methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3]
D YPC_3896 yqhD; NADP-dependent alcohol dehydrogenase K08325 yqhD; NADP-dependent alcohol dehydrogenase [EC:1.1.-.-]
C 00650 Butanoate metabolism [PATH:yph00650]
D YPC_0474 fadB; fatty acid oxidation complex alpha subunit K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D YPC_1498 putative fatty oxidation complex alpha subunit, enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D YPC_4625 putative reductase K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D YPC_1802 adhE; NADP-dependent alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D YPC_1629 tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83]
D YPC_1164 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D YPC_1165 sdhB; succinate dehydrogenase, FeS subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D YPC_1163 sdhD; succinate dehydrogenase, membrane subunit, binds cytochrome b556 K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D YPC_0642 frdA; fumarate reductase flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D YPC_0643 frdB; electron transport complex protein RnfC K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D YPC_0644 frdC; fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C
D YPC_0645 frdD; fumarate reductase subunit D K00247 frdD; succinate dehydrogenase subunit D
D YPC_1277 goaG; putative aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D YPC_2904 putative aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D YPC_2789 pflB; formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D YPC_1963 nifJ; putative pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D YPC_2700 putative hydroxymethylglutaryl-coenzyme A synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10]
D YPC_0322 ilvG; acetolactate synthase isozyme II large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPC_4051 ilvI; acetolactate synthase isozyme III large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPC_4052 ilvH; acetolactate synthase III, thiamin-dependent, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D YPC_1919 ilvN; acetolactate synthase I, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D YPC_0323 ilvM; acetolactate synthase II, small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:yph00660]
D YPC_0322 ilvG; acetolactate synthase isozyme II large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPC_4051 ilvI; acetolactate synthase isozyme III large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPC_4052 ilvH; acetolactate synthase III, thiamin-dependent, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D YPC_1919 ilvN; acetolactate synthase I, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D YPC_0323 ilvM; acetolactate synthase II, small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D YPC_1168 sucC; succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D YPC_1169 sucD; succinyl-CoA synthetase, NAD(P)-binding, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D YPC_0244 putative transferase K10218 ligK; 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17]
D YPC_4043 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D YPC_4042 leuD; 3-isopropylmalate isomerase subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D YPC_4044 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:yph00562]
D YPC_3095 putative inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D YPC_1753 putative histidine acid phosphatase K01093 appA; 4-phytase / acid phosphatase [EC:3.1.3.26 3.1.3.2]
D YPC_3291 Inosose dehydratase K03335 iolE; inosose dehydratase [EC:4.2.1.44]
D YPC_3299 putative thiamine pyrophosphate-dependent protein K03336 iolD; 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) [EC:3.7.1.22]
D YPC_3290 5-keto-2-deoxygluconokinase B K03337 iolB; 5-deoxy-glucuronate isomerase [EC:5.3.1.30]
D YPC_3292 putative carbohydrate kinase K03338 iolC; 5-dehydro-2-deoxygluconokinase [EC:2.7.1.92]
D YPC_3300 putative aldehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D YPC_0247 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:yph00190]
D YPC_1560 nuoA; NADH:ubiquinone oxidoreductase, membrane subunit A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D YPC_1561 nuoB; NADH:ubiquinone oxidoreductase, chain B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D YPC_1562 nuoC; NADH:ubiquinone oxidoreductase, chain C,D K13378 nuoCD; NADH-quinone oxidoreductase subunit C/D [EC:7.1.1.2]
D YPC_1563 nuoE; NADH:ubiquinone oxidoreductase, chain E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D YPC_1564 nuoF; NADH:ubiquinone oxidoreductase, chain F K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D YPC_1565 nuoG; NADH:ubiquinone oxidoreductase, chain G K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D YPC_1566 nuoH; NADH:ubiquinone oxidoreductase, membrane subunit H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D YPC_1567 nuoI; NADH:ubiquinone oxidoreductase, chain I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D YPC_1568 nuoJ; NADH:ubiquinone oxidoreductase, membrane subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D YPC_1569 nuoK; NADH:ubiquinone oxidoreductase, membrane subunit K K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D YPC_1570 nuoL; NADH:ubiquinone oxidoreductase, membrane subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D YPC_1571 nuoM; NADH:ubiquinone oxidoreductase, membrane subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D YPC_1572 nuoN; NADH:ubiquinone oxidoreductase, membrane subunit N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D YPC_1717 ndh; respiratory NADH dehydrogenase 2/cupric reductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D YPC_1164 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D YPC_1165 sdhB; succinate dehydrogenase, FeS subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D YPC_1163 sdhD; succinate dehydrogenase, membrane subunit, binds cytochrome b556 K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D YPC_0642 frdA; fumarate reductase flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D YPC_0643 frdB; electron transport complex protein RnfC K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D YPC_0644 frdC; fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C
D YPC_0645 frdD; fumarate reductase subunit D K00247 frdD; succinate dehydrogenase subunit D
D YPC_3453 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D YPC_3452 cyoD; cytochrome o ubiquinol oxidase subunit IV K02300 cyoD; cytochrome o ubiquinol oxidase subunit IV
D YPC_3451 cyoC; cytochrome o ubiquinol oxidase subunit III K02299 cyoC; cytochrome o ubiquinol oxidase subunit III
D YPC_3450 cyoB; cytochrome o ubiquinol oxidase subunit I K02298 cyoB; cytochrome o ubiquinol oxidase subunit I [EC:7.1.1.3]
D YPC_3449 cyoA; cytochrome o ubiquinol oxidase subunit II K02297 cyoA; cytochrome o ubiquinol oxidase subunit II [EC:7.1.1.3]
D YPC_1170 cydA; cytochrome D ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D YPC_1171 cydB; cytochrome D ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D YPC_1172 hypothetical protein K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7]
D YPC_4649 atpA; F1 sector of membrane-bound ATP synthase, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D YPC_4646 atpD; F1 sector of membrane-bound ATP synthase, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D YPC_4648 atpG; F1 sector of membrane-bound ATP synthase, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D YPC_4650 atpH; F1 sector of membrane-bound ATP synthase, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D YPC_4645 atpC; F1 sector of membrane-bound ATP synthase, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D YPC_4653 atpB; F0 sector of membrane-bound ATP synthase, subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D YPC_4651 atpF; F0 sector of membrane-bound ATP synthase, subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D YPC_4652 atpE; F0 sector of membrane-bound ATP synthase, subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D YPC_0588 ppa; inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D YPC_1285 ppk; polyphosphate kinase, component of RNA degradosome K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms
C 00720 Carbon fixation pathways in prokaryotes
C 00680 Methane metabolism [PATH:yph00680]
D YPC_2652 Alcohol dehydrogenase class III;Glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D YPC_2653 putative esterase K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12]
D YPC_4574 fdoH; formate dehydrogenase-O, iron-sulfur subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D YPC_4573 fdoI; formate dehydrogenase, cytochrome b556 protein K00127 fdoI; formate dehydrogenase subunit gamma
D YPC_0658 fdhF; formate dehydrogenase H K22015 fdhF; formate dehydrogenase (hydrogenase) [EC:1.17.98.4 1.17.98.-]
D YPC_3105 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D YPC_3700 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D YPC_0287 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D YPC_0582 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D YPC_0882 fbaA; fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D YPC_4465 putative class-II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D YPC_0587 fbp; fructose-1,6-bisphosphatase I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D YPC_0251 Fructose-1,6-bisphosphatase, GlpX type K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D YPC_0240 pfkA; 6-phosphofructokinase I K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D YPC_1667 hypothetical protein K10713 fae; 5,6,7,8-tetrahydromethanopterin hydro-lyase [EC:4.2.1.147]
D YPC_1547 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D YPC_1545 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D YPC_0757 acs; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D YPC_2043 pps; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D YPC_1188 gpmA; phosphoglyceromutase 1 K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D YPC_4135 ytjC; phosphoglyceromutase 2, co-factor independent K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D YPC_0224 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D YPC_2906 putative D-isomer specific 2-hydroxyacid dehydrogenase family protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YPC_0889 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YPC_2782 serC; 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D YPC_4148 serB; 3-phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 00910 Nitrogen metabolism [PATH:yph00910]
D YPC_1339 napA; nitrate reductase, periplasmic, large subunit K02567 napA; nitrate reductase (cytochrome) [EC:1.9.6.1]
D YPC_1341 napB; cytochrome C-type protein NapB precursor K02568 napB; nitrate reductase (cytochrome), electron transfer subunit
D YPC_0098 nirB; nitrite reductase K00362 nirB; nitrite reductase (NADH) large subunit [EC:1.7.1.15]
D YPC_0097 nirD; nitrite reductase small subunit K00363 nirD; nitrite reductase (NADH) small subunit [EC:1.7.1.15]
D YPC_2824 hcp; Hydroxylamine reductase K05601 hcp; hydroxylamine reductase [EC:1.7.99.1]
D YPC_4477 gdhA; NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D YPC_4226 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D YPC_4270 gltB; glutamate synthase, large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D YPC_4271 gltD; 2,4-dienoyl-CoA reductase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D YPC_1002 putative carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
D YPC_3737 can; carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:yph00920]
D YPC_1364 Sulfate and thiosulfate binding protein cysP K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D YPC_0241 sbp; sulfate transporter subunit; periplasmic-binding component of ABC superfamily K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D YPC_1365 sulfate transport system permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D YPC_1366 cysW; sulfate transport system permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D YPC_1367 cysA; sulfate/thiosulfate transporter subunit; ATP-binding component of ABC superfamily K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D YPC_0119 tauA; putative taurine-binding periplasmic protein precursor K15551 tauA; taurine transport system substrate-binding protein
D YPC_0121 tauC; putative taurine transport system permease protein K15552 tauC; taurine transport system permease protein
D YPC_0120 tauB; putative taurine transport ATP-binding protein K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7]
D YPC_0122 tauD; putative taurine dioxygenase K03119 tauD; taurine dioxygenase [EC:1.14.11.17]
D YPC_4390 ssuA; putative aliphatic sulfonates binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D YPC_4388 ssuC; putative aliphatic sulfonates transport permease protein K15554 ssuC; sulfonate transport system permease protein
D YPC_4387 ssuB; putative aliphatic sulfonates transport ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D YPC_4389 ssuD; alkanesulfonate monooxygenase K04091 ssuD; alkanesulfonate monooxygenase [EC:1.14.14.5 1.14.14.34]
D YPC_4391 ssuE; putative NAD(P)H-dependent FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38]
D YPC_3684 cysN; sulfate adenylyltransferase, subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D YPC_3685 cysD; sulfate adenylyltransferase, subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D YPC_3683 cysC; adenosine 5'-phosphosulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D YPC_0597 cysQ; inositol monophosphatase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D YPC_3694 cysJ; sulfite reductase, alpha subunit, flavoprotein K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
D YPC_3693 cysI; sulfite reductase subunit beta K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
D YPC_3017 sseA; 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D YPC_0056 glpE; thiosulfate sulfurtransferase K02439 glpE; thiosulfate sulfurtransferase [EC:2.8.1.1]
D YPC_0230 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D YPC_4528 pyridoxal-phosphate dependent protein K01738 cysK; cysteine synthase [EC:2.5.1.47]
D YPC_3430 putative Pyridoxal-phosphate dependent protein K01738 cysK; cysteine synthase [EC:2.5.1.47]
D YPC_1393 cysK; cysteine synthase A, O-acetylserine sulfhydrolase A subunit K01738 cysK; cysteine synthase [EC:2.5.1.47]
D YPC_0019 metA; homoserine transsuccinylase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D YPC_0280 Cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D YPC_3642 anaerobic dimethyl sulfoxide reductase chain A K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]
D YPC_1431 dmsA; putative dimethyl sulfoxide reductase chain A protein K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]
D YPC_3641 anaerobic dimethyl sulfoxide reductase chain B K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B
D YPC_1430 dmsB; putative dimethyl sulfoxide reductase chain B protein K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B
D YPC_3640 anaerobic dimethyl sulfoxide reductase chain C K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C
D YPC_1429 dmsC; putative dimethyl sulfoxide reductase chain C protein K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:yph00061]
D YPC_1099 accA; acetyl-CoA carboxylase, carboxytransferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D YPC_4348 accB; acetyl CoA carboxylase, BCCP subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D YPC_4349 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D YPC_1521 accD; acetyl-CoA carboxylase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D YPC_1697 acpP; acyl carrier protein (ACP) K02078 acpP; acyl carrier protein
D YPC_1695 fabD; malonyl-CoA-[acyl-carrier-protein] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D YPC_2693 putative acyl transferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D YPC_1694 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D YPC_1509 fabB; Beta-ketoacyl-ACP synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D YPC_2702 putative beta-ketoacyl-[acyl-carrier-protein] synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D YPC_1698 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D YPC_2735 3-oxoacyl-acyl carrier protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D YPC_1696 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D YPC_2701 putative beta-ketoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D YPC_2731 fabA; beta-hydroxydecanoyl thioester dehydrase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D YPC_1094 fabZ; (3R)-hydroxymyristol acyl carrier protein dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D YPC_2703 putative (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydrase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D YPC_4625 putative reductase K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D YPC_4050 putative AMP-binding enzyme-family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D YPC_2238 fadD; acyl-CoA synthetase, long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:yph00071]
D YPC_0473 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D YPC_1497 fadI; beta-ketoacyl-CoA thiolase, anaerobic, subunit K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D YPC_0474 fadB; fatty acid oxidation complex alpha subunit K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D YPC_1498 putative fatty oxidation complex alpha subunit, enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D YPC_3538 fadE; medium-long-chain fatty acyl-CoA dehydrogenase K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-]
D YPC_4050 putative AMP-binding enzyme-family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D YPC_2238 fadD; acyl-CoA synthetase, long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D YPC_2652 Alcohol dehydrogenase class III;Glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D YPC_1802 adhE; NADP-dependent alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:yph00561]
D YPC_4488 glxK; putative glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D YPC_3668 dhaK; putative dihydroxyacetone kinase K05878 dhaK; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaK [EC:2.7.1.121]
D YPC_3667 putative dihydroxyacetone kinase, ADP-bindingsubunit K05879 dhaL; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaL [EC:2.7.1.121]
D YPC_0252 Glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D YPC_3628 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D YPC_0692 plsB; glycerol-3-phosphate O-acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D YPC_1693 plsX; fatty acid/phospholipid synthesis protein K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D YPC_3930 ygiH; conserved inner membrane protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D YPC_3902 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D YPC_0691 dgkA; diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D YPC_2558 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
C 00564 Glycerophospholipid metabolism [PATH:yph00564]
D YPC_0228 gpsA; glycerol-3-phosphate dehydrogenase (NAD+) K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D YPC_4435 Aerobic glycerol-3-phosphate dehydrogenase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D YPC_0692 plsB; glycerol-3-phosphate O-acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D YPC_3930 ygiH; conserved inner membrane protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D YPC_3902 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D YPC_0691 dgkA; diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D YPC_0403 pldB; lysophospholipase L(2) K01048 pldB; lysophospholipase [EC:3.1.1.5]
D YPC_0406 glpQ; periplasmic glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D YPC_0447 ugpQ; glycerophosphodiester phosphodiesterase, cytosolic K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D YPC_4494 cdh; CDP-diacylglycerol phosphotidylhydrolase K01521 cdh; CDP-diacylglycerol pyrophosphatase [EC:3.6.1.26]
D YPC_3338 putative phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D YPC_1089 cdsA; CDP-diglyceride synthase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D YPC_3571 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D YPC_0638 psd; phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D YPC_2395 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D YPC_3465 pgpA; phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
D YPC_1853 pgpB; phosphatidylglycerophosphatase B K01096 pgpB; phosphatidylglycerophosphatase B [EC:3.1.3.27 3.6.1.75 3.1.3.4 3.6.1.27]
D YPC_3122 yfhB; conserved protein K18697 pgpC; phosphatidylglycerophosphatase C [EC:3.1.3.27]
D YPC_1811 cls; cardiolipin synthase 1 K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism [PATH:yph00600]
D YPC_2339 putative glycosyl transferase K00720 UGCG; ceramide glucosyltransferase [EC:2.4.1.80]
D YPC_1761 lacZ; beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D YPC_2558 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism [PATH:yph00592]
D YPC_0473 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D YPC_1497 fadI; beta-ketoacyl-CoA thiolase, anaerobic, subunit K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01040 Biosynthesis of unsaturated fatty acids [PATH:yph01040]
D YPC_3359 tesA; multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D YPC_3424 tesB; acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D YPC_1821 yciA; esterase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:yph00230]
D YPC_3911 nudF; ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D YPC_0079 nudE; ADP-ribose diphosphatase K08312 nudE; ADP compounds hydrolase [EC:3.6.1.-]
D YPC_4152 deoB; phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D YPC_3172 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D YPC_2306 prsA; phosphoribosylpyrophosphate synthase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D YPC_1525 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D YPC_0524 purD; phosphoribosylamine-glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D YPC_1294 purN; phosphoribosylglycinamide formyltransferase 1 K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D YPC_2506 purT; phosphoribosylglycinamide formyltransferase 2 K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21]
D YPC_3119 purL; phosphoribosylformyl-glycineamide synthetase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D YPC_1295 purM; phosphoribosylaminoimidazole synthetase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D YPC_3356 purK; N5-carboxyaminoimidazole ribonucleotide synthase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D YPC_3355 purE; N5-carboxyaminoimidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D YPC_1313 purC; phosphoribosylaminoimidazole-succinocarboxamide synthetase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D YPC_1738 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D YPC_0525 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D YPC_4529 putative phosphoribosyl transferase protein K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D YPC_3677 surE; stationary-phase survival protein K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D YPC_3242 nagD; putative N-acetylglucosamine metabolism protein K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D YPC_0077 yrfG; phosphoglycolate phosphatase K20881 yrfG; GMP/IMP 5'-nucleotidase [EC:3.1.3.-]
D YPC_3377 gsk; inosine-guanosine kinase K00892 gsk; inosine kinase [EC:2.7.1.73]
D YPC_1232 xapA; xanthosine phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D YPC_4151 deoD; purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D YPC_3499 yaiE; conserved protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D YPC_3580 yfiH; conserved protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D YPC_3738 hpt; hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D YPC_3058 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D YPC_3073 ndk; multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'-phosphodiesterase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D YPC_4136 hypothetical protein K01529 yjjX; inosine/xanthosine triphosphatase [EC:3.6.1.73]
D YPC_0855 yggV; dITP/XTP pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D YPC_3515 gpt; guanine-xanthine phosphoribosyltransferase K00769 gpt; xanthine phosphoribosyltransferase [EC:2.4.2.22]
D YPC_3056 guaA; GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D YPC_3765 guaC; GMP reductase K00364 guaC; GMP reductase [EC:1.7.1.7]
D YPC_0200 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D YPC_3210 nrdE; ribonucleoside-diphosphate reductase 2, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D YPC_2995 nrdA; ribonucleoside-diphosphate reductase 1 alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D YPC_2996 nrdB; ribonucleoside-diphosphate reductase 1 beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D YPC_3211 nrdF; ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D YPC_3791 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D YPC_3709 dgt; deoxyguanosine triphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1]
D YPC_1554 yfbR; nucleotidase K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89]
D YPC_0198 spoT; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D YPC_1284 ppx; exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D YPC_3704 relA; GTP pyrophosphokinase K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5]
D YPC_0382 cyaA; adenylate cyclase K05851 cyaA; adenylate cyclase, class 1 [EC:4.6.1.1]
D YPC_3035 cyaB; adenylate cyclase 2 K05873 cyaB; adenylate cyclase, class 2 [EC:4.6.1.1]
D YPC_3159 putative 3',5'-cyclic-nucleotide phosphodiesterase K01120 cpdP; 3',5'-cyclic-nucleotide phosphodiesterase [EC:3.1.4.17]
D YPC_0621 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D YPC_1910 AMP nucleosidase K01241 amn; AMP nucleosidase [EC:3.2.2.4]
D YPC_1067 ygdH; conserved protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
D YPC_0598 cpdB; 2':3'-cyclic-nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D YPC_3398 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D YPC_3702 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D YPC_3908 3',5'-cyclic-nucleotide phosphodiesterase K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]
D YPC_4002 apaH; diadenosine tetraphosphatase K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41]
D YPC_3683 cysC; adenosine 5'-phosphosulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D YPC_3684 cysN; sulfate adenylyltransferase, subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D YPC_3685 cysD; sulfate adenylyltransferase, subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D YPC_3217 hypothetical protein K16842 hpxB; allantoinase [EC:3.5.2.5]
D YPC_3548 putative amino acid hydrolase K02083 allC; allantoate deiminase [EC:3.5.3.9]
D YPC_3549 Serine--pyruvate aminotransferase/L-alanine:glyoxylate aminotransferase K00839 pucG; (S)-ureidoglycine---glyoxylate transaminase [EC:2.6.1.112]
D YPC_3193 ureC; urease alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D YPC_3194 ureB; urease beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D YPC_3195 ureA; urease gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
D YPC_3558 putative amidase K22601 hpxY; oxamate carbamoyltransferase [EC:2.1.3.5]
C 00240 Pyrimidine metabolism [PATH:yph00240]
D YPC_4104 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D YPC_4105 carA; carbamoyl phosphate synthetase small subunit, glutamine amidotransferase K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D YPC_4302 pyrB; aspartate carbamoyltransferase, catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D YPC_4303 pyrI; aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D YPC_1685 pyrC; dihydro-orotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D YPC_2747 pyrD; dihydro-orotate oxidase, FMN-linked K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D YPC_0205 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D YPC_1857 pyrF; orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D YPC_1085 pyrH; uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D YPC_3073 ndk; multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'-phosphodiesterase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D YPC_3702 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D YPC_4339 yhdE; conserved protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D YPC_3994 putative metal-dependent hydrolase K07043 upp; UTP pyrophosphatase [EC:3.6.1.-]
D YPC_3701 pyrG; CTP synthetase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D YPC_2780 cmk; cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D YPC_2144 nudG; putative pyrophosphohydrolase K08320 nudG; (d)CTP diphosphatase [EC:3.6.1.65]
D YPC_2628 udk; uridine/cytidine kinase K00876 udk; uridine kinase [EC:2.7.1.48]
D YPC_3677 surE; stationary-phase survival protein K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D YPC_3242 nagD; putative N-acetylglucosamine metabolism protein K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D YPC_1920 haloacid dehalogenase-like hydrolase family protein K08723 yjjG; pyrimidine 5'-nucleotidase [EC:3.1.3.-]
D YPC_0453 udp; uridine phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3]
D YPC_3499 yaiE; conserved protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D YPC_1296 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D YPC_0598 cpdB; 2':3'-cyclic-nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D YPC_1067 ygdH; conserved protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
D YPC_2641 cdd; cytidine/deoxycytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D YPC_0100 codA; cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D YPC_3791 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D YPC_2627 dcd; 2'-deoxycytidine 5'-triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D YPC_3210 nrdE; ribonucleoside-diphosphate reductase 2, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D YPC_2995 nrdA; ribonucleoside-diphosphate reductase 1 alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D YPC_2996 nrdB; ribonucleoside-diphosphate reductase 1 beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D YPC_3211 nrdF; ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D YPC_1554 yfbR; nucleotidase K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89]
D YPC_1704 tmk; thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D YPC_0207 dut; deoxyuridinetriphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D YPC_2131 tdk; thymidine kinase/deoxyuridine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21]
D YPC_1044 thyA; thymidylate synthetase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:yph00250]
D YPC_2756 aspC; aspartate transaminase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D YPC_3140 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D YPC_2153 ansA; cytoplasmic L-asparaginase I K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D YPC_2785 ansB; periplasmic L-asparaginase II K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D YPC_0003 asnA; aspartate-ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D YPC_3244 asnB; asparagine synthetase B K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D YPC_1556 yfbQ; putative aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D YPC_0654 aspA; aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1]
D YPC_2577 argG; argininosuccinate synthetase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D YPC_0291 argH; putative argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D YPC_0621 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D YPC_1738 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D YPC_4302 pyrB; aspartate carbamoyltransferase, catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D YPC_4303 pyrI; aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D YPC_1277 goaG; putative aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D YPC_2904 putative aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D YPC_4270 gltB; glutamate synthase, large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D YPC_4271 gltD; 2,4-dienoyl-CoA reductase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D YPC_4477 gdhA; NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D YPC_2412 putA; 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D YPC_4226 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D YPC_4104 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D YPC_4105 carA; carbamoyl phosphate synthetase small subunit, glutamine amidotransferase K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D YPC_0850 putative glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D YPC_4642 glmS; L-glutamine:D-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D YPC_1525 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:yph00260]
D YPC_0032 lysC; aspartokinase III K00928 lysC; aspartate kinase [EC:2.7.2.4]
D YPC_0282 metL; bifunctional aspartokinase/homoserine dehydrogenase K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D YPC_4450 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D YPC_4128 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D YPC_4127 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D YPC_2828 ltaA; L-allo-threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48]
D YPC_3105 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D YPC_4599 ghrB; D-isomer specific 2-hydroxyacid dehydrogenase family protein K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D YPC_4488 glxK; putative glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D YPC_1188 gpmA; phosphoglyceromutase 1 K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D YPC_4135 ytjC; phosphoglyceromutase 2, co-factor independent K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D YPC_0224 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D YPC_2906 putative D-isomer specific 2-hydroxyacid dehydrogenase family protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YPC_0889 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YPC_2782 serC; 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D YPC_4148 serB; 3-phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D YPC_0219 kbl; glycine C-acetyltransferase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D YPC_0220 tdh; L-threonine 3-dehydrogenase K00060 tdh; threonine 3-dehydrogenase [EC:1.1.1.103]
D YPC_0900 gcvP; glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D YPC_0898 gcvT; glycine cleavage system aminomethyltransferase T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D YPC_0298 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPC_3752 lpd; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPC_0899 gcvH; glycine cleavage complex lipoylprotein K02437 gcvH; glycine cleavage system H protein
D YPC_3571 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D YPC_1226 betB; betaine aldehyde dehydrogenase K00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8]
D YPC_2510 sdaA; L-serine dehydratase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D YPC_0326 ilvA; threonine deaminase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D YPC_4610 pyridoxal-phosphate dependent enzyme K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D YPC_1511 putative aspartate/glutamate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
D YPC_1795 putative alanine racemase K25317 alr; amino-acid racemase [EC:5.1.1.10]
D YPC_1831 trpA; tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D YPC_1832 trpB; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D YPC_2623 putative decarboxylase K13745 ddc; L-2,4-diaminobutyrate decarboxylase [EC:4.1.1.86]
C 00270 Cysteine and methionine metabolism [PATH:yph00270]
D YPC_0230 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D YPC_4528 pyridoxal-phosphate dependent protein K01738 cysK; cysteine synthase [EC:2.5.1.47]
D YPC_3430 putative Pyridoxal-phosphate dependent protein K01738 cysK; cysteine synthase [EC:2.5.1.47]
D YPC_1393 cysK; cysteine synthase A, O-acetylserine sulfhydrolase A subunit K01738 cysK; cysteine synthase [EC:2.5.1.47]
D YPC_3893 metC; cystathionine beta-lyase, PLP-dependent K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D YPC_0728 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D YPC_1374 putative aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D YPC_0027 metH; homocysteine-N5-methyltetrahydrofolate transmethylase, B12-dependent K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D YPC_0451 metE; 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D YPC_0871 metK; methionine adenosyltransferase 1 K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D YPC_3742 speD; S-adenosylmethionine decarboxylase K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D YPC_3741 speE; spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D YPC_1671 ypeI; Homoserine lactone synthase YpeI K22956 expI; acyl homoserine lactone synthase [EC:2.3.1.184]
D YPC_0811 yspI; N-3-oxooctanoyl-L-homoserine lactone synthase;N-3-oxohexanoyl-L-homoserine lactone synthase K22956 expI; acyl homoserine lactone synthase [EC:2.3.1.184]
D YPC_3710 pfs; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D YPC_3580 yfiH; conserved protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D YPC_0682 tyrB; tyrosine aminotransferase, tyrosine-repressible, PLP-dependent K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D YPC_2115 yebR; conserved protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14]
D YPC_3610 luxS; S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D YPC_0032 lysC; aspartokinase III K00928 lysC; aspartate kinase [EC:2.7.2.4]
D YPC_0282 metL; bifunctional aspartokinase/homoserine dehydrogenase K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D YPC_4450 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D YPC_0019 metA; homoserine transsuccinylase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D YPC_0280 Cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D YPC_0324 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D YPC_3612 gshA; gamma-glutamate-cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D YPC_0865 gshB; glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D YPC_2756 aspC; aspartate transaminase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D YPC_3017 sseA; 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D YPC_1511 putative aspartate/glutamate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
D YPC_1795 putative alanine racemase K25317 alr; amino-acid racemase [EC:5.1.1.10]
D YPC_2419 dcyD; D-cysteine desulfhydrase, PLP-dependent K05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15]
D YPC_0582 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D YPC_2510 sdaA; L-serine dehydratase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D YPC_1368 cysM; cysteine synthase B K12339 cysM; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144]
D YPC_2906 putative D-isomer specific 2-hydroxyacid dehydrogenase family protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YPC_0889 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YPC_2782 serC; 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:yph00280]
D YPC_0324 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D YPC_0298 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPC_3752 lpd; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPC_0474 fadB; fatty acid oxidation complex alpha subunit K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D YPC_1498 putative fatty oxidation complex alpha subunit, enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D YPC_0473 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D YPC_1497 fadI; beta-ketoacyl-CoA thiolase, anaerobic, subunit K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D YPC_3300 putative aldehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D YPC_2700 putative hydroxymethylglutaryl-coenzyme A synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:yph00290]
D YPC_0326 ilvA; threonine deaminase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D YPC_4610 pyridoxal-phosphate dependent enzyme K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D YPC_4043 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D YPC_4042 leuD; 3-isopropylmalate isomerase subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D YPC_4044 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D YPC_0322 ilvG; acetolactate synthase isozyme II large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPC_4051 ilvI; acetolactate synthase isozyme III large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPC_4052 ilvH; acetolactate synthase III, thiamin-dependent, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D YPC_1919 ilvN; acetolactate synthase I, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D YPC_0323 ilvM; acetolactate synthase II, small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D YPC_0333 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D YPC_0325 ilvD; dihydroxyacid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D YPC_0324 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D YPC_4602 avtA; valine-pyruvate aminotransferase K00835 avtA; valine--pyruvate aminotransferase [EC:2.6.1.66]
D YPC_1556 yfbQ; putative aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D YPC_4045 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:yph00300]
D YPC_0032 lysC; aspartokinase III K00928 lysC; aspartate kinase [EC:2.7.2.4]
D YPC_0282 metL; bifunctional aspartokinase/homoserine dehydrogenase K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D YPC_4450 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D YPC_1309 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D YPC_4106 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D YPC_1079 dapD; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D YPC_0108 Acetylornithine aminotransferase/N-succinyl-L,L-diaminopimelate aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D YPC_1319 dapE; N-succinyl-diaminopimelate deacylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D YPC_0386 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D YPC_1027 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D YPC_4062 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D YPC_4063 murF; UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:yph00310]
D YPC_1167 sucB; dihydrolipoyltranssuccinase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D YPC_0298 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPC_3752 lpd; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPC_0474 fadB; fatty acid oxidation complex alpha subunit K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D YPC_1498 putative fatty oxidation complex alpha subunit, enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D YPC_1511 putative aspartate/glutamate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
D YPC_1795 putative alanine racemase K25317 alr; amino-acid racemase [EC:5.1.1.10]
D YPC_2904 putative aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D YPC_2773 hypothetical protein K25986 ydcJ; 2-oxoadipate dioxygenase/decarboxylase [EC:1.13.11.93]
D YPC_2040 ydiJ; putative FAD-linked oxidoreductase K26063 ydiJ; (R)-2-hydroxyglutarate dehydrogenase [EC:1.1.-.-]
C 00220 Arginine biosynthesis [PATH:yph00220]
D YPC_3783 argI; ornithine carbamoyltransferase chain I K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D YPC_2577 argG; argininosuccinate synthetase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D YPC_0291 argH; putative argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D YPC_3193 ureC; urease alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D YPC_3194 ureB; urease beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D YPC_3195 ureA; urease gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
D YPC_0850 putative glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D YPC_4226 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D YPC_4477 gdhA; NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D YPC_2756 aspC; aspartate transaminase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D YPC_1556 yfbQ; putative aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D YPC_1053 argA; amino acid N-acetyltransferase K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1]
D YPC_0290 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D YPC_0289 argC; N-acetyl-gamma-glutamylphosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D YPC_0108 Acetylornithine aminotransferase/N-succinyl-L,L-diaminopimelate aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D YPC_0288 argE; acetylornithine deacetylase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16]
C 00330 Arginine and proline metabolism [PATH:yph00330]
D YPC_0100 codA; cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D YPC_3009 putative amino acid decarboxylase K01584 adiA; arginine decarboxylase [EC:4.1.1.19]
D YPC_0873 speA; arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19]
D YPC_0861 Agmatine deiminase K10536 aguA; agmatine deiminase [EC:3.5.3.12]
D YPC_0862 putative carbon-nitrogen hydrolase K12251 aguB; N-carbamoylputrescine amidase [EC:3.5.1.53]
D YPC_0839 speC; ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D YPC_3741 speE; spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D YPC_3742 speD; S-adenosylmethionine decarboxylase K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D YPC_1293 speG; spermidine acetyltransferase K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57]
D YPC_0858 proC; putative pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D YPC_2412 putA; 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D YPC_3512 proB; gamma-glutamate kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D YPC_3511 proA; gamma-glutamylphosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D YPC_2498 Proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D YPC_2756 aspC; aspartate transaminase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism [PATH:yph00340]
D YPC_2601 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D YPC_2608 hisI; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31]
D YPC_2606 hisA; imidazole glycerol phosphate synthase subunit HisF K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D YPC_2605 hisH; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit with HisF K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D YPC_2607 hisF; imidazole glycerol phosphate synthase, catalytic subunit with HisH K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D YPC_2604 hisB; bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase K01089 hisB; imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase [EC:4.2.1.19 3.1.3.15]
D YPC_2603 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D YPC_2602 hisD; bifunctional histidinal dehydrogenase/histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D YPC_4526 hutH; histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
D YPC_4527 hutU; urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49]
D YPC_2351 hutI; imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7]
D YPC_2349 putative chlorohydrolase K05603 hutF; formimidoylglutamate deiminase [EC:3.5.3.13]
D YPC_2352 hutG; putative N-formylglutamate amidohydrolase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68]
C 00350 Tyrosine metabolism [PATH:yph00350]
D YPC_2756 aspC; aspartate transaminase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D YPC_2603 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D YPC_0682 tyrB; tyrosine aminotransferase, tyrosine-repressible, PLP-dependent K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D YPC_3018 putative pyridoxal-dependent decarboxylase K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105]
D YPC_2652 Alcohol dehydrogenase class III;Glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D YPC_1802 adhE; NADP-dependent alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D YPC_2512 hpaB; 4-hydroxyphenylacetate 3-monooxygenase K00483 hpaB; 4-hydroxyphenylacetate 3-monooxygenase [EC:1.14.14.9]
D YPC_2511 hpaC; 4-hydroxyphenylacetate 3-monooxygenase coupling protein K00484 hpaC; flavin reductase (NADH) [EC:1.5.1.36]
D YPC_2518 hpaD; 3,4-dihydroxyphenylacetate 2,3-dioxygenase K00455 hpaD; 3,4-dihydroxyphenylacetate 2,3-dioxygenase [EC:1.13.11.15]
D YPC_2519 5-carboxymethyl-2-hydroxymuconate semialdehydedehydrogenase K00151 hpaE; 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase [EC:1.2.1.60]
D YPC_2517 hpaF; 5-carboxymethyl-2-hydroxymuconate delta-isomerase K01826 hpaF; 5-carboxymethyl-2-hydroxymuconate isomerase [EC:5.3.3.10]
D YPC_2520 5-carboxymethyl-2-hydroxymuconatedelta-isomerase K05921 hpaG; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase [EC:4.1.1.68 5.3.3.-]
D YPC_2521 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase/5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioatedecarboxylase K05921 hpaG; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase [EC:4.1.1.68 5.3.3.-]
D YPC_2516 hpaH; 2-oxo-hept-3-ene-1,7-dioate hydratase K02509 hpaH; 2-oxo-hept-3-ene-1,7-dioate hydratase [EC:4.2.1.-]
D YPC_2515 hpaI; 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase K02510 hpaI; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52]
D YPC_2904 putative aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00360 Phenylalanine metabolism [PATH:yph00360]
D YPC_3018 putative pyridoxal-dependent decarboxylase K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105]
D YPC_2756 aspC; aspartate transaminase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D YPC_2603 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D YPC_0682 tyrB; tyrosine aminotransferase, tyrosine-repressible, PLP-dependent K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D YPC_2167 dadA; D-amino acid dehydrogenase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
D YPC_3635 katY; catalase-peroxidase K03782 katG; catalase-peroxidase [EC:1.11.1.21]
C 00380 Tryptophan metabolism [PATH:yph00380]
D YPC_1167 sucB; dihydrolipoyltranssuccinase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D YPC_0298 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPC_3752 lpd; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPC_0474 fadB; fatty acid oxidation complex alpha subunit K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D YPC_1498 putative fatty oxidation complex alpha subunit, enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D YPC_3018 putative pyridoxal-dependent decarboxylase K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105]
D YPC_3004 katA; catalase K03781 katE; catalase [EC:1.11.1.6]
D YPC_3635 katY; catalase-peroxidase K03782 katG; catalase-peroxidase [EC:1.11.1.21]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:yph00400]
D YPC_1187 Phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D YPC_3591 aroF; phospho-2-dehydro-3-deoxyheptonate aldolase, tyr-sensitive K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D YPC_2045 aroH; phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D YPC_0088 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D YPC_4347 aroQ; putative class II dehydroquinase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D YPC_0186 aroE; shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D YPC_0087 aroK; shikimate kinase I K00891 aroK; shikimate kinase [EC:2.7.1.71]
D YPC_3500 aroL; shikimate kinase II K00891 aroK; shikimate kinase [EC:2.7.1.71]
D YPC_2781 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D YPC_1502 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D YPC_1836 trpE; component I of anthranilate synthase K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D YPC_1835 trpG; anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D YPC_1834 trpD; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D YPC_1833 trpC; tryptophan biosynthesis protein TrpCF K13498 trpCF; indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase [EC:4.1.1.48 5.3.1.24]
D YPC_1831 trpA; tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D YPC_1832 trpB; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D YPC_3590 tyrA; Chorismate mutase I / Cyclohexadienyldehydrogenase, NAD-specific K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12]
D YPC_2833 putative chorismate mutase K04093 pheA1; chorismate mutase [EC:5.4.99.5]
D YPC_3586 methyl-accepting chemotaxis protein II K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D YPC_3661 putative extracellular solute-binding protein K01713 pheC; cyclohexadienyl dehydratase [EC:4.2.1.51 4.2.1.91]
D YPC_3589 transferase K04518 pheA2; prephenate dehydratase [EC:4.2.1.51]
D YPC_2756 aspC; aspartate transaminase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D YPC_2603 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D YPC_0682 tyrB; tyrosine aminotransferase, tyrosine-repressible, PLP-dependent K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:yph00410]
D YPC_3732 panD; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D YPC_1277 goaG; putative aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D YPC_3731 panC; pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D YPC_0474 fadB; fatty acid oxidation complex alpha subunit K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D YPC_1498 putative fatty oxidation complex alpha subunit, enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D YPC_3300 putative aldehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
C 00430 Taurine and hypotaurine metabolism [PATH:yph00430]
D YPC_0122 tauD; putative taurine dioxygenase K03119 tauD; taurine dioxygenase [EC:1.14.11.17]
D YPC_1545 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D YPC_1547 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism [PATH:yph00440]
D YPC_3798 phnI; PhnI protein K06164 phnI; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI [EC:2.7.8.37]
D YPC_3796 phnG; PhnG protein K06166 phnG; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG [EC:2.7.8.37]
D YPC_3797 PhnH protein K06165 phnH; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH [EC:2.7.8.37]
D YPC_3801 phnL; phosphonates transport ATP-binding protein K05780 phnL; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [EC:2.7.8.37]
D YPC_3802 phnM; PhnM protein K06162 phnM; alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase [EC:3.6.1.63]
D YPC_3799 phnJ; PhnJ protein K06163 phnJ; alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase [EC:4.7.1.1]
D YPC_3804 phnP; PhnP protein K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]
C 00450 Selenocompound metabolism [PATH:yph00450]
D YPC_0280 Cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D YPC_3893 metC; cystathionine beta-lyase, PLP-dependent K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D YPC_0728 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D YPC_1374 putative aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D YPC_0027 metH; homocysteine-N5-methyltetrahydrofolate transmethylase, B12-dependent K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D YPC_0451 metE; 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D YPC_2034 sufS; selenocysteine lyase, PLP-dependent K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D YPC_2802 trxB; nitrite reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D YPC_3684 cysN; sulfate adenylyltransferase, subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D YPC_3685 cysD; sulfate adenylyltransferase, subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D YPC_2148 selD; selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D YPC_4571 selA; L-seryl-tRNA selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D YPC_2630 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:yph00460]
D YPC_3325 bglB; putative beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D YPC_3963 putative glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D YPC_2153 ansA; cytoplasmic L-asparaginase I K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D YPC_2785 ansB; periplasmic L-asparaginase II K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D YPC_0003 asnA; aspartate-ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D YPC_3105 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:yph00470]
D YPC_0683 alr; alanine racemase 1, PLP-binding, biosynthetic K01775 alr; alanine racemase [EC:5.1.1.1]
D YPC_4069 ddlB; D-alanine--D-alanine ligase B K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D YPC_1511 putative aspartate/glutamate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
D YPC_1795 putative alanine racemase K25317 alr; amino-acid racemase [EC:5.1.1.10]
D YPC_0850 putative glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D YPC_0306 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D YPC_4065 murD; UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D YPC_1971 putative mandelate racemase / muconate lactonizing protein K19802 ycjG; L-Ala-D/L-Glu epimerase / N-acetyl-D-glutamate racemase [EC:5.1.1.20 5.1.1.25]
D YPC_2419 dcyD; D-cysteine desulfhydrase, PLP-dependent K05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15]
D YPC_0386 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D YPC_1027 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D YPC_2841 hypothetical protein K23120 cntL; histidine 2-aminobutanoyltransferase [EC:2.5.1.152 2.5.1.-]
D YPC_2840 putative exported protein K23122 cntM; staphylopine/pseudopaline/yersinopine synthase [EC:1.5.1.52 1.5.1.-]
D YPC_2167 dadA; D-amino acid dehydrogenase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
C 00480 Glutathione metabolism [PATH:yph00480]
D YPC_3157 Allophanate hydrolase subunit 1 K23123 pxpB; 5-oxoprolinase (ATP-hydrolysing) subunit B [EC:3.5.2.9]
D YPC_3156 ybgK; putative enzyme subunit K23124 pxpC; 5-oxoprolinase (ATP-hydrolysing) subunit C [EC:3.5.2.9]
D YPC_3612 gshA; gamma-glutamate-cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D YPC_0865 gshB; glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D YPC_3778 pepA; aminopeptidase A, a cyteinylglycinase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D YPC_3084 pepB; aminopeptidase B K07751 pepB; PepB aminopeptidase [EC:3.4.11.23]
D YPC_2749 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D YPC_3522 pepD; aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D YPC_1997 gst; glutathionine S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D YPC_2877 yliJ; putative glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D YPC_4483 gor; glutathione oxidoreductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7]
D YPC_1743 icd; 3-isopropylmalate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D YPC_2609 gnd; gluconate-6-phosphate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D YPC_2248 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D YPC_2059 btuE; putative glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
D YPC_0299 putative peroxiredoxin/glutaredoxin family protein K24136 pgdX; glutathione-dependent peroxiredoxin [EC:1.11.1.27]
D YPC_0839 speC; ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D YPC_3741 speE; spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation [PATH:yph00511]
D YPC_1761 lacZ; beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
C 00540 Lipopolysaccharide biosynthesis [PATH:yph00540]
D YPC_1095 lpxA; UDP-N-acetylglucosamine acetyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D YPC_4073 lpxC; UDP-3-O-acyl N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D YPC_1093 lpxD; UDP-N-acetylglucosamine acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D YPC_3354 lpxH; UDP-2,3-diacylglucosamine pyrophosphatase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D YPC_1096 lpxB; tetraacyldisaccharide-1-P synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D YPC_2774 lpxK; lipid A 4' kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D YPC_4291 kdsD; D-arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D YPC_2298 kdsA; 3-deoxy-D-manno-octulosonate 8-phosphate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D YPC_4292 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D YPC_2769 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D YPC_0215 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D YPC_2252 lpxM; lauroyl acyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243]
D YPC_2918 yeiU; undecaprenyl pyrophosphate phosphatase K19803 lpxT; Kdo2-lipid A phosphotransferase [EC:2.7.4.29]
D YPC_2006 putative membrane protein precursor K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D YPC_4523 eptB; putative metal dependent hydrolase K12975 eptB; KDO II ethanolaminephosphotransferase [EC:2.7.8.42]
D YPC_2537 Lipid A acylation protein PagP,palmitoyltransferase K12973 pagP; lipid IVA palmitoyltransferase [EC:2.3.1.251]
D YPC_2053 arnT; 4-amino-4-deoxy-L-arabinose transferase K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43]
D YPC_4380 lipid A biosynthesis KDO2-lauroyl-lipid IVA acyltransferase K12974 lpxP; KDO2-lipid IV(A) palmitoleoyltransferase [EC:2.3.1.242]
D YPC_3537 gmhA; D-sedoheptulose 7-phosphate isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D YPC_3922 rfaE; ADP-heptose synthase/D-glycero-beta-D-manno-heptose 7-phosphate kinase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D YPC_1114 gmhB; D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D YPC_0218 rfaD; UDP-glucose 4-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D YPC_0216 rfaC; ADP-heptose:LPS heptosyl transferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D YPC_0217 rfaF; ADP-heptose:LPS heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D YPC_4184 rfaQ; lipopolysaccharide core biosynthesis protein K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
C 00542 O-Antigen repeat unit biosynthesis [PATH:yph00542]
D YPC_0356 rfe; Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:yph00541]
D YPC_2610 galF; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YPC_2611 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YPC_1194 galE; UDP-glucose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D YPC_0361 rffH; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D YPC_0360 rffG; dTDP-D-glucose-4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D YPC_0363 rffA; dTDP-4-keto-6-deoxy-D-glucose aminotransferase K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59]
D YPC_0362 rffC; dTDP-fucosamine acetyltransferase K16704 rffC; dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase [EC:2.3.1.210]
D YPC_3394 ddhA; glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D YPC_3393 UDP-glucose 4-epimerase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45]
D YPC_3392 ddhC; putative CDP-4-keto-6-deoxy-D-glucose-3-dehydratase K12452 ascC; CDP-4-dehydro-6-deoxyglucose reductase, E1 [EC:1.17.1.1]
D YPC_3395 Na+-translocating NADH-quinone reductase subunit F K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1]
D YPC_3391 prt; paratose synthase K12453 rfbS; CDP-paratose synthetase [EC:1.1.1.342]
D YPC_1895 manA; mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D YPC_1649 manB2; phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D YPC_3379 manB; phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D YPC_3381 manC; mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D YPC_3382 GDP-L-fucose synthetase; Colanic acidbiosynthesis protein wcaG K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D YPC_4643 glmU; 3-deoxy-manno-octulosonate cytidylyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D YPC_0358 rffE; UDP-N-acetyl glucosamine-2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D YPC_0359 rffD; UDP-N-acetyl-D-mannosamine dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
C 00550 Peptidoglycan biosynthesis [PATH:yph00550]
D YPC_4283 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D YPC_4068 murC; UDP-N-acetylmuramate:L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D YPC_4065 murD; UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D YPC_4062 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D YPC_4069 ddlB; D-alanine--D-alanine ligase B K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D YPC_4063 murF; UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D YPC_1088 ispU; undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D YPC_3928 bacA; undecaprenyl pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D YPC_2862 ybjG; putative permease K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D YPC_4064 mraY; phospho-N-acetylmuramoyl-pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D YPC_4067 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D YPC_4263 mtgA; biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D YPC_0080 mrcA; Multimodular transpeptidase-transglycosylase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D YPC_3722 mrcB; bifunctional glycosyl transferase/transpeptidase K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D YPC_3307 Multimodular transpeptidase-transglycosylase K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D YPC_3271 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D YPC_4061 ftsI; penicillin-binding protein 3 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D YPC_3274 dacA; putative penicillin-binding protein 5 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D YPC_2870 dacC; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D YPC_0572 dacB; D-alanyl-D-alanine carboxypeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
C 00552 Teichoic acid biosynthesis [PATH:yph00552]
D YPC_3928 bacA; undecaprenyl pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D YPC_2862 ybjG; putative permease K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D YPC_0356 rfe; Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:yph00543]
D YPC_0356 rfe; Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D YPC_0367 rffM; putative UDP-N-acetyl-D-mannosaminuronic acid transferase K02852 wecG; UDP-N-acetyl-D-mannosaminouronate:lipid I N-acetyl-D-mannosaminouronosyltransferase [EC:2.4.1.180]
D YPC_0365 4-alpha-L-fucosyltransferase K12582 wecF; dTDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase [EC:2.4.1.325]
D YPC_0230 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:yph00730]
D YPC_0514 thiC; thiamine biosynthesis protein ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D YPC_1261 thiD; bifunctional hydroxy-methylpyrimidine kinase/hydroxy-phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D YPC_3092 iscS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YPC_2174 putative aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YPC_3458 thiI; sulfur transfer protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D YPC_3462 dxs; 1-deoxyxylulose-5-phosphate synthase, thiamine-requiring, FAD-requiring K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D YPC_3466 thiL; thiamin-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D YPC_0637 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D YPC_1922 phoA; alkaline phosphatase precursor K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D YPC_1714 hypothetical protein K07251 thiK; thiamine kinase [EC:2.7.1.89]
D YPC_3398 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:yph00740]
D YPC_1852 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D YPC_3469 ribD; tRNA-specific adenosine deaminase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D YPC_0389 yigB; FMN phosphatase K20862 yigB; FMN hydrolase / 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.102 3.1.3.104]
D YPC_3918 ribB; 3,4-dihydroxy-2-butanone-4-phosphate synthase K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12]
D YPC_3468 ribE; riboflavin synthase beta chain K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D YPC_2021 ribC; riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D YPC_4113 ribF; bifunctional riboflavin kinase/FAD synthetase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D YPC_1753 putative histidine acid phosphatase K01093 appA; 4-phytase / acid phosphatase [EC:3.1.3.26 3.1.3.2]
D YPC_2511 hpaC; 4-hydroxyphenylacetate 3-monooxygenase coupling protein K00484 hpaC; flavin reductase (NADH) [EC:1.5.1.36]
D YPC_0472 fre; flavin reductase K05368 fre; NAD(P)H-flavin reductase [EC:1.5.1.41]
D YPC_4391 ssuE; putative NAD(P)H-dependent FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38]
D YPC_3911 nudF; ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D YPC_1741 nudJ; thiamin pyrophosphate (TPP) hydrolase K12152 nudJ; phosphatase NudJ [EC:3.6.1.-]
D YPC_1526 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism [PATH:yph00750]
D YPC_2000 pdxH; pyridoxine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D YPC_1998 pdxY; pyridoxal kinase 2/pyridoxine kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D YPC_0880 epd; D-erythrose 4-phosphate dehydrogenase K03472 epd; D-erythrose 4-phosphate dehydrogenase [EC:1.2.1.72]
D YPC_1517 pdxB; erythronate-4-phosphate dehydrogenase K03473 pdxB; erythronate-4-phosphate dehydrogenase [EC:1.1.1.290]
D YPC_2782 serC; 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D YPC_4005 pdxA; 4-hydroxy-L-threonine phosphate dehydrogenase, NAD-dependent K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
D YPC_3129 pdxJ; pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2]
D YPC_4127 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:yph00760]
D YPC_3140 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D YPC_1184 nadA; quinolinate synthase, subunit A K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D YPC_3761 nadC; quinolinate phosphoribosyltransferase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D YPC_2752 pncB; nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D YPC_1232 xapA; xanthosine phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D YPC_4151 deoD; purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D YPC_4146 nadR; NadR transcriptional repressor / ribosylnicotinamide kinase / NMN adenylyltransferase K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D YPC_3677 surE; stationary-phase survival protein K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D YPC_3242 nagD; putative N-acetylglucosamine metabolism protein K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D YPC_3268 nadD; nicotinic acid mononucleotide adenylyltransferase, NAD(P)-dependent K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D YPC_3702 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D YPC_0516 nudC; NADH pyrophosphatase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D YPC_3109 nadE; putative glutamine-dependent NAD K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D YPC_3623 ygaD; conserved protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D YPC_2154 pncA; nicotinamidase and pyrazinamidase K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-]
D YPC_1732 cobB; deacetylase of acetyl-CoA synthetase, NAD-dependent K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D YPC_1159 nadK; ATP-NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D YPC_0301 sthA; soluble pyridine nucleotide transhydrogenase K00322 sthA; NAD(P) transhydrogenase [EC:1.6.1.1]
D YPC_1929 pntA; pyridine nucleotide transhydrogenase, alpha subunit K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D YPC_1928 pntB; pyridine nucleotide transhydrogenase, beta subunit K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
D YPC_2904 putative aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:yph00770]
D YPC_0322 ilvG; acetolactate synthase isozyme II large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPC_4051 ilvI; acetolactate synthase isozyme III large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPC_4052 ilvH; acetolactate synthase III, thiamin-dependent, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D YPC_1919 ilvN; acetolactate synthase I, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D YPC_0323 ilvM; acetolactate synthase II, small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D YPC_0333 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D YPC_0325 ilvD; dihydroxyacid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D YPC_3730 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D YPC_3456 panE; 2-dehydropantoate reductase, NADPH-specific K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D YPC_3731 panC; pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D YPC_0489 coaA; pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33]
D YPC_0208 dfp; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D YPC_3702 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D YPC_0213 coaD; phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D YPC_3766 coaE; Dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D YPC_3128 acpS; 4'-phosphopantetheinyl transferase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D YPC_3480 acpH; ACP phosphodiesterase K08682 acpH; acyl carrier protein phosphodiesterase [EC:3.1.4.14]
D YPC_0324 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D YPC_3732 panD; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
C 00780 Biotin metabolism [PATH:yph00780]
D YPC_1209 bioC; putative methltransferase, enzyme of biotin synthesis K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197]
D YPC_1509 fabB; Beta-ketoacyl-ACP synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D YPC_2702 putative beta-ketoacyl-[acyl-carrier-protein] synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D YPC_1698 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D YPC_2735 3-oxoacyl-acyl carrier protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D YPC_1696 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D YPC_2701 putative beta-ketoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D YPC_1094 fabZ; (3R)-hydroxymyristol acyl carrier protein dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D YPC_2703 putative (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydrase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D YPC_0064 bioH; carboxylesterase K02170 bioH; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85]
D YPC_1208 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D YPC_1206 bioA; adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D YPC_1210 bioD; dethiobiotin synthetase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D YPC_1902 ynfK; putative dethiobiotin synthetase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D YPC_1207 bioB; biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6]
D YPC_1029 Biotin sulfoxide reductase K08351 bisC; biotin/methionine sulfoxide reductase [EC:1.-.-.-]
C 00785 Lipoic acid metabolism [PATH:yph00785]
D YPC_3276 lipB; lipoyl-protein ligase K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D YPC_3277 lipA; lipoate synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D YPC_2048 lplA; putative lipoate-protein ligase A K03800 lplA; lipoate---protein ligase [EC:6.3.1.20]
D YPC_0298 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPC_3752 lpd; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPC_3755 aceE; transketolase K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D YPC_3754 aceF; pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D YPC_1166 sucA; 2-oxoglutarate decarboxylase, thiamin-requiring K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D YPC_1167 sucB; dihydrolipoyltranssuccinase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D YPC_0900 gcvP; glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D YPC_0898 gcvT; glycine cleavage system aminomethyltransferase T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D YPC_0899 gcvH; glycine cleavage complex lipoylprotein K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:yph00790]
D YPC_2649 folE; GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D YPC_1922 phoA; alkaline phosphatase precursor K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D YPC_2261 nudB; dATP pyrophosphohydrolase K08310 nudB; dihydroneopterin triphosphate diphosphatase [EC:3.6.1.67]
D YPC_3929 folB; bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D YPC_3729 folK; 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D YPC_0566 folP; 7,8-dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D YPC_4100 folA; dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D YPC_1522 folC; bifunctional folylpolyglutamate synthase/dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D YPC_1852 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D YPC_0107 pabA; aminodeoxychorismate synthase, subunit II K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85]
D YPC_2508 pabB; aminodeoxychorismate synthase, subunit I K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85]
D YPC_1701 pabC; 4-amino-4-deoxychorismate lyase component of para-aminobenzoate synthase multienzyme complex K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D YPC_3695 ygcM; putative 6-pyruvoyl tetrahydrobiopterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D YPC_3696 ygcF; conserved protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D YPC_3433 queC; enzyme in preQ0 biosynthesis K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D YPC_1068 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D YPC_1216 moaA; molybdopterin biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D YPC_1217 moaC; molybdopterin biosynthesis, protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D YPC_1219 moaE; molybdopterin synthase, large subunit K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D YPC_4122 mog; putative molybdochelatase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D YPC_2659 moeA; molybdopterin biosynthesis protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D YPC_4242 mobA; molybdopterin-guanine dinucleotide biosynthesis protein A K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:yph00670]
D YPC_4100 folA; dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D YPC_3348 folD; Methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D YPC_3105 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D YPC_1294 purN; phosphoribosylglycinamide formyltransferase 1 K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D YPC_0525 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D YPC_0180 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D YPC_0898 gcvT; glycine cleavage system aminomethyltransferase T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D YPC_0027 metH; homocysteine-N5-methyltetrahydrofolate transmethylase, B12-dependent K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D YPC_1044 thyA; thymidylate synthetase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D YPC_2138 Formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D YPC_0283 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D YPC_0717 putative methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D YPC_0891 ygfA; putative ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:yph00860]
D YPC_1405 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D YPC_2303 hemA; glutamyl tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D YPC_3717 hemL; Succinylornithine transaminase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D YPC_0469 hemB; delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D YPC_0379 hemC; hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D YPC_0378 hemD; uroporphyrinogen III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D YPC_0518 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D YPC_1346 hemF; coproporphyrinogen III oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3]
D YPC_4229 hemN; coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen-independent K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D YPC_0480 hemG; protoporphyrin oxidase, flavoprotein K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3]
D YPC_3397 hemH; ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D YPC_0377 hemX; putative uroporphyrinogen III methylase K02496 hemX; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D YPC_0094 Siroheme synthase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
D YPC_3686 cysG; siroheme synthase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
D YPC_3453 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D YPC_4832 putative porphyrin biosynthetic protein K09882 cobS; cobaltochelatase CobS [EC:6.6.1.2]
D YPC_1842 btuR; cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D YPC_0146 bfr; bacterioferritin, iron storage and detoxification protein K03594 bfr; bacterioferritin [EC:1.16.3.1]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:yph00130]
D YPC_0694 ubiC; chorismate pyruvate lyase K03181 ubiC; chorismate lyase [EC:4.1.3.40]
D YPC_0693 ubiA; p-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D YPC_0471 3-polyprenyl-4-hydroxybenzoate carboxy-lyase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D YPC_1526 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D YPC_0897 visC; putative oxidoreductase with FAD/NAD(P)-binding domain K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240]
D YPC_2994 ubiG; bifunctional 3-demethylubiquinone-9 3-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
D YPC_0896 ubiH; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
D YPC_0458 ubiE; yersiniabactin biosynthetic protein K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D YPC_3252 ubiF; 2-octoprenyl-3-methyl-6-methoxy-1,4-benzoquinone hydroxylase K03184 ubiF; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60]
D YPC_1593 menF; isochorismate synthase 2 K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
D YPC_1594 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9]
D YPC_1595 yfbB; Menaquinone biosynthesis related protein,putative DHNA-CoA thioesterase K08680 menH; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [EC:4.2.99.20]
D YPC_1597 menC; o-succinylbenzoyl-CoA synthase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113]
D YPC_1598 menE; o-succinylbenzoate-CoA ligase K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26]
D YPC_1596 menB; dihydroxynaphthoic acid synthetase K01661 menB; naphthoate synthase [EC:4.1.3.36]
D YPC_2039 ydiI; esterase K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28]
D YPC_0268 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D YPC_2406 trp repressor binding protein K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D YPC_1747 ytfG; NAD(P)H:quinone oxidoreductase K19267 qorB; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:yph00900]
D YPC_3462 dxs; 1-deoxyxylulose-5-phosphate synthase, thiamine-requiring, FAD-requiring K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D YPC_1087 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D YPC_3680 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D YPC_2305 ispE; 4-diphosphocytidyl-2-C-methylerythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D YPC_3679 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D YPC_3069 ispG; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D YPC_4109 ispH; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase, 4Fe-4S protein K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D YPC_2700 putative hydroxymethylglutaryl-coenzyme A synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10]
D YPC_1526 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D YPC_3461 ispA; geranyltranstransferase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D YPC_0579 ispB; octaprenyl diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D YPC_1088 ispU; undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation [PATH:yph00907]
D YPC_0474 fadB; fatty acid oxidation complex alpha subunit K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D YPC_1498 putative fatty oxidation complex alpha subunit, enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D YPC_0473 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D YPC_1497 fadI; beta-ketoacyl-CoA thiolase, anaerobic, subunit K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D YPC_0877 tktA; transketolase 1 K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:yph00523]
D YPC_0361 rffH; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D YPC_0360 rffG; dTDP-D-glucose-4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides [PATH:yph01053]
D YPC_1593 menF; isochorismate synthase 2 K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
D YPC_2561 putative phosphopantetheinyl transferase K02362 entD; enterobactin synthetase component D [EC:6.3.2.14 2.7.8.-]
D YPC_0771 yersiniabactin biosynthetic protein YbtU K12241 pchG; pyochelin biosynthesis protein PchG
C 01055 Biosynthesis of vancomycin group antibiotics
D YPC_0360 rffG; dTDP-D-glucose-4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids [PATH:yph00946]
D YPC_3325 bglB; putative beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D YPC_3963 putative glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis [PATH:yph00332]
D YPC_3512 proB; gamma-glutamate kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D YPC_3511 proA; gamma-glutamylphosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:yph00261]
D YPC_3684 cysN; sulfate adenylyltransferase, subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D YPC_3685 cysD; sulfate adenylyltransferase, subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D YPC_0032 lysC; aspartokinase III K00928 lysC; aspartate kinase [EC:2.7.2.4]
D YPC_0282 metL; bifunctional aspartokinase/homoserine dehydrogenase K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D YPC_4450 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D YPC_1309 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D YPC_4106 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:yph00521]
D YPC_1418 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D YPC_3172 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D YPC_3095 putative inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D YPC_0361 rffH; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D YPC_0360 rffG; dTDP-D-glucose-4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D YPC_1418 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:yph00525]
D YPC_0361 rffH; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D YPC_0360 rffG; dTDP-D-glucose-4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:yph00401]
D YPC_3590 tyrA; Chorismate mutase I / Cyclohexadienyldehydrogenase, NAD-specific K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12]
D YPC_2756 aspC; aspartate transaminase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D YPC_2603 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D YPC_0682 tyrB; tyrosine aminotransferase, tyrosine-repressible, PLP-dependent K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D YPC_1836 trpE; component I of anthranilate synthase K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D YPC_1835 trpG; anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D YPC_1695 fabD; malonyl-CoA-[acyl-carrier-protein] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D YPC_2693 putative acyl transferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D YPC_1696 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D YPC_2701 putative beta-ketoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D YPC_1697 acpP; acyl carrier protein (ACP) K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:yph00999]
D YPC_0871 metK; methionine adenosyltransferase 1 K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D YPC_0186 aroE; shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D YPC_3325 bglB; putative beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D YPC_3963 putative glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C 00997 Biosynthesis of various other secondary metabolites [PATH:yph00997]
D YPC_0799 iucD; putative siderophore biosynthesis protein IucD K03897 iucD; lysine N6-hydroxylase [EC:1.14.13.59]
D YPC_0801 iucB; putative siderophore biosynthesis protein IucB K03896 iucB; acetyl CoA:N6-hydroxylysine acetyl transferase [EC:2.3.1.102]
D YPC_0802 Aerobactin siderophore biosynthesis proteiniucA K03894 iucA; N2-citryl-N6-acetyl-N6-hydroxylysine synthase [EC:6.3.2.38]
D YPC_0803 Aerobactin siderophore biosynthesis proteiniucA K03894 iucA; N2-citryl-N6-acetyl-N6-hydroxylysine synthase [EC:6.3.2.38]
D YPC_0800 iucC; putative siderophore biosynthesis protein IucC K03895 iucC; aerobactin synthase [EC:6.3.2.39]
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:yph00362]
D YPC_0473 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D YPC_1497 fadI; beta-ketoacyl-CoA thiolase, anaerobic, subunit K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D YPC_4498 putative tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D YPC_4362 putative gamma carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
D YPC_2322 putative decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
D YPC_0245 hypothetical protein K16515 galB; 4-oxalomesaconate hydratase [EC:4.2.1.83]
D YPC_0244 putative transferase K10218 ligK; 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17]
D YPC_1498 putative fatty oxidation complex alpha subunit, enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D YPC_0474 fadB; fatty acid oxidation complex alpha subunit K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
C 00627 Aminobenzoate degradation [PATH:yph00627]
D YPC_2713 yccX; acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D YPC_1526 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00364 Fluorobenzoate degradation [PATH:yph00364]
D YPC_0452 putative carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00625 Chloroalkane and chloroalkene degradation [PATH:yph00625]
D YPC_2652 Alcohol dehydrogenase class III;Glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D YPC_1802 adhE; NADP-dependent alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:yph00361]
D YPC_0452 putative carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00623 Toluene degradation [PATH:yph00623]
D YPC_0452 putative carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00622 Xylene degradation
D YPC_4498 putative tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00633 Nitrotoluene degradation [PATH:yph00633]
D YPC_2009 NADH:flavin oxidoreductase / NADH oxidase family protein K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
D YPC_1239 Morphinone reductase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
C 00642 Ethylbenzene degradation
D YPC_0473 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D YPC_1497 fadI; beta-ketoacyl-CoA thiolase, anaerobic, subunit K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 00643 Styrene degradation
C 00791 Atrazine degradation
D YPC_3193 ureC; urease alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D YPC_3194 ureB; urease beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D YPC_3195 ureA; urease gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
C 00930 Caprolactam degradation [PATH:yph00930]
D YPC_0474 fadB; fatty acid oxidation complex alpha subunit K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D YPC_1498 putative fatty oxidation complex alpha subunit, enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
D YPC_4498 putative tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00626 Naphthalene degradation [PATH:yph00626]
D YPC_2652 Alcohol dehydrogenase class III;Glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D YPC_1802 adhE; NADP-dependent alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:yph03020]
D YPC_0505 rpoB; RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D YPC_0506 rpoC; RNA polymerase, beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D YPC_0173 rpoA; RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D YPC_0199 rpoZ; RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:yph03010]
D YPC_2779 rpsA; 30S ribosomal subunit protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D YPC_1083 rpsB; 30S ribosomal subunit protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D YPC_0154 rpsC; 30S ribosomal subunit protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D YPC_0172 rpsD; 30S ribosomal subunit protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D YPC_0165 rpsE; 30S ribosomal subunit protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D YPC_0608 rpsF; 30S ribosomal subunit protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D YPC_0139 rpsG; 30S ribosomal subunit protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D YPC_0162 rpsH; 30S ribosomal subunit protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D YPC_4275 rpsI; 30S ribosomal subunit protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D YPC_0147 rpsJ; 30S ribosomal subunit protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D YPC_0171 rpsK; 30S ribosomal subunit protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D YPC_0138 rpsL; 30S ribosomal subunit protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D YPC_0170 rpsM; 30S ribosomal subunit protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D YPC_0161 rpsN; 30S ribosomal subunit protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D YPC_0556 rpsO; 30S ribosomal subunit protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D YPC_3603 rpsP; 30S ribosomal subunit protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D YPC_0157 rpsQ; 30S ribosomal subunit protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D YPC_0606 rpsR; 30S ribosomal subunit protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D YPC_0152 rpsS; 30S ribosomal subunit protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D YPC_4114 rpsT; 30S ribosomal subunit protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D YPC_3933 rpsU; 30S ribosomal subunit protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D YPC_0502 rplA; 50S ribosomal subunit protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D YPC_0151 rplB; 50S ribosomal protein l2 K02886 RP-L2; large subunit ribosomal protein L2
D YPC_0148 rplC; 50S ribosomal subunit protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D YPC_0149 rplD; 50S ribosomal subunit protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D YPC_0160 rplE; 50S ribosomal subunit protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D YPC_0163 rplF; 50S ribosomal subunit protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D YPC_0504 rplL; 50S ribosomal subunit protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D YPC_0605 rplI; 50S ribosomal subunit protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D YPC_0503 rplJ; 50S ribosomal subunit protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D YPC_0501 rplK; 50S ribosomal subunit protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D YPC_4276 rplM; 50S ribosomal subunit protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D YPC_0158 rplN; 50S ribosomal subunit protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D YPC_0167 rplO; 50S ribosomal subunit protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D YPC_0155 rplP; 50S ribosomal subunit protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D YPC_0174 rplQ; 50S ribosomal subunit protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D YPC_0164 rplR; 50S ribosomal subunit protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D YPC_3600 rplS; 50S ribosomal subunit protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D YPC_2067 rplT; 50S ribosomal subunit protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D YPC_0578 rplU; 50S ribosomal subunit protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D YPC_0153 rplV; 50S ribosomal subunit protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D YPC_0150 rplW; 50S ribosomal subunit protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D YPC_0159 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D YPC_2935 rplY; 50S ribosomal subunit protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D YPC_0577 rpmA; 50S ribosomal subunit protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D YPC_0210 rpmB; 50S ribosomal subunit protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D YPC_0156 rpmC; 50S ribosomal subunit protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D YPC_0166 rpmD; 50S ribosomal subunit protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D YPC_3415 putative ribosomal protein K02909 RP-L31; large subunit ribosomal protein L31
D YPC_0275 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D YPC_1692 rpmF; 50S ribosomal subunit protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D YPC_0211 rpmG; 50S ribosomal subunit protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D YPC_4620 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D YPC_2068 rpmI; 50S ribosomal subunit protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D YPC_3416 putative ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D YPC_0169 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D YPC_0013 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPC_0527 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPC_1116 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPC_4248 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPC_0308 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPC_3577 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPC_0482 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPC_0015 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPC_4246 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPC_3574 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPC_1118 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPC_0530 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPC_0485 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPC_0310 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPC_0311 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPC_1119 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPC_3573 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPC_4245 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPC_0486 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPC_0531 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPC_0016 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPC_0018 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:yph00970]
D YPC_1401 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YPC_1402 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YPC_0484 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YPC_0529 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YPC_3575 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YPC_1481 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPC_3616 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPC_3617 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPC_3615 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPC_0369 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPC_3347 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPC_2550 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D YPC_2569 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D YPC_0313 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D YPC_1120 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D YPC_1129 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D YPC_2393 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D YPC_3248 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D YPC_3249 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D YPC_3251 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D YPC_0014 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D YPC_1117 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D YPC_4247 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D YPC_0309 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D YPC_0496 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPC_0921 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPC_0634 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPC_2394 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPC_0635 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPC_0370 tRNA-His K14226 tRNA-His; tRNA His
D YPC_0483 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D YPC_0528 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D YPC_3576 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D YPC_3247 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPC_2392 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPC_0371 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPC_4171 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPC_0563 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPC_3775 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPC_1183 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPC_1181 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPC_1408 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPC_1182 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPC_2403 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPC_3246 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPC_3250 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPC_0562 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPC_1056 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPC_1055 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPC_3936 tRNA-Ile K14230 tRNA-Met; tRNA Met
D YPC_0662 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D YPC_0837 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D YPC_2941 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D YPC_0372 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D YPC_4518 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D YPC_2981 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YPC_2711 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YPC_3618 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YPC_2287 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YPC_2295 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YPC_0017 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YPC_0497 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YPC_0494 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YPC_2980 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YPC_0314 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D YPC_0495 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D YPC_2140 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D YPC_1406 tRNA-Val K14237 tRNA-Val; tRNA Val
D YPC_1407 tRNA-Val K14237 tRNA-Val; tRNA Val
D YPC_2024 tRNA-Val K14237 tRNA-Val; tRNA Val
D YPC_2023 tRNA-Val K14237 tRNA-Val; tRNA Val
D YPC_4546 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D YPC_1405 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D YPC_3235 glnS; glutamyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D YPC_3620 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D YPC_2262 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D YPC_2753 asnS; asparaginyl tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D YPC_4593 glyQ; glycine tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D YPC_4592 glyS; glycine tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D YPC_2070 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D YPC_2796 Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D YPC_4571 selA; L-seryl-tRNA selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D YPC_3352 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D YPC_2630 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D YPC_0180 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D YPC_3780 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D YPC_3265 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D YPC_4112 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D YPC_0920 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D YPC_2272 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D YPC_1108 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D YPC_3067 hisS; histidyl tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D YPC_2064 pheS; phenylalanine tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D YPC_2063 pheT; phenylalanine tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D YPC_1999 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D YPC_0093 trpS; tryptophan-tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:yph03060]
D YPC_0168 secY; preprotein translocase membrane subunit K03076 secY; preprotein translocase subunit SecY
D YPC_0499 secE; preprotein translocase membrane subunit K03073 secE; preprotein translocase subunit SecE
D YPC_0564 secG; preprotein translocase membrane subunit K03075 secG; preprotein translocase subunit SecG
D YPC_3476 secD; SecYEG protein translocase auxillary subunit K03072 secD; preprotein translocase subunit SecD
D YPC_3475 secF; SecYEG protein translocase auxillary subunit K03074 secF; preprotein translocase subunit SecF
D YPC_3477 yajC; SecYEG protein translocase auxillary subunit K03210 yajC; preprotein translocase subunit YajC
D YPC_4623 yidC; cytoplasmic insertase into membrane protein, Sec system K03217 yidC; YidC/Oxa1 family membrane protein insertase
D YPC_4076 secA; preprotein translocase subunit, ATPase K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D YPC_0227 secB; protein export chaperone K03071 secB; preprotein translocase subunit SecB
D YPC_4075 secM; regulator of secA translation K13301 secM; secretion monitor
D YPC_3605 ffh; Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D YPC_3420 ffs; 4.5S RNA K01983 ffs; SRP RNA
D YPC_0421 ftsY; membrane-binding signal recognition particle (SRP) receptor K03110 ftsY; fused signal recognition particle receptor
D YPC_0461 tatA; component of Sec-independent translocase K03116 tatA; sec-independent protein translocase protein TatA
D YPC_0462 tatB; component of Sec-independent translocase K03117 tatB; sec-independent protein translocase protein TatB
D YPC_0463 tatC; component of Sec-independent translocase K03118 tatC; sec-independent protein translocase protein TatC
D YPC_3278 tatE; component of Sec-independent translocase K03425 tatE; sec-independent protein translocase protein TatE
D YPC_3133 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:yph04122]
D YPC_3092 iscS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YPC_2174 putative aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YPC_3017 sseA; 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D YPC_0413 sirA; sulfur transfer protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D YPC_0137 yheL; sulfur transfer complex subunit TusB K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D YPC_0136 yheM; sulfur relay protein TusC K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D YPC_0135 yheN; tRNA 2-thiouridine synthesizing protein, subunit of sulfur transfer complex, TusD K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D YPC_2712 yccK; sulfur transfer protein K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D YPC_1740 mnmA; tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D YPC_1219 moaE; molybdopterin synthase, large subunit K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D YPC_1216 moaA; molybdopterin biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D YPC_1218 moaD; molybdopterin synthase, small subunit K03636 moaD; sulfur-carrier protein
D YPC_2660 moeB; molybdopterin synthase sulfurylase K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D YPC_1217 moaC; molybdopterin biosynthesis, protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D YPC_4122 mog; putative molybdochelatase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D YPC_3458 thiI; sulfur transfer protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D YPC_0511 Sulfur carrier protein ThiS K03154 thiS; sulfur carrier protein
C 03050 Proteasome
C 03018 RNA degradation [PATH:yph03018]
D YPC_1040 nudH; nucleotide hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D YPC_1688 rne; RNase E K08300 rne; ribonuclease E [EC:3.1.26.12]
D YPC_0353 rhlB; ATP-dependent RNA helicase K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D YPC_3700 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D YPC_3832 pnp; polynucleotide phosphorylase/polyadenylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D YPC_3045 putative ATP-dependent RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D YPC_1249 putative ATP-dependent RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D YPC_0619 rnr; exoribonuclease R, RNase R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D YPC_3830 deaD; ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D YPC_0400 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D YPC_0355 rho; transcription termination factor K03628 rho; transcription termination factor Rho
D YPC_0240 pfkA; 6-phosphofructokinase I K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D YPC_4118 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D YPC_0650 groL; Heat shock protein 60 family chaperone GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D YPC_0626 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D YPC_1285 ppk; polyphosphate kinase, component of RNA degradosome K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D YPC_3728 Poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:yph03030]
D YPC_2497 holE; DNA polymerase III, theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D YPC_1128 dnaQ; DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D YPC_4831 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D YPC_1098 dnaE; DNA polymerase III, alpha chain K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D YPC_3403 dnaX; Holliday junction DNA helicase RuvB K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D YPC_1705 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D YPC_3267 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D YPC_4167 holD; DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D YPC_3779 holC; DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D YPC_4617 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D YPC_0684 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D YPC_3934 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D YPC_0679 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D YPC_1127 rnhA; ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D YPC_1097 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D YPC_4238 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D YPC_0201 ligB; putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D YPC_1396 ligA; DNA ligase, NAD(+)-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:yph03410]
D YPC_1868 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D YPC_0847 mutY; adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D YPC_0212 mutM; formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D YPC_2432 putative glycosidase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D YPC_4594 tag; 3-methyl-adenine DNA glycosylase I, constitutive K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D YPC_2143 xthA; exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D YPC_2886 nfo; endonuclease IV with intrinsic 3'-5' exonuclease activity K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D YPC_4238 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D YPC_0918 recJ; ssDNA exonuclease, 5' --> 3'-specific K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D YPC_0201 ligB; putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D YPC_1396 ligA; DNA ligase, NAD(+)-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:yph03420]
D YPC_1724 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D YPC_0680 uvrA; ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC K03701 uvrA; excinuclease ABC subunit A
D YPC_1212 uvrB; excinulease of nucleotide excision repair, DNA damage recognition component K03702 uvrB; excinuclease ABC subunit B
D YPC_2396 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D YPC_0390 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D YPC_4238 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D YPC_0201 ligB; putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D YPC_1396 ligA; DNA ligase, NAD(+)-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:yph03430]
D YPC_3673 mutS; methyl-directed mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS
D YPC_0628 mutL; methyl-directed mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D YPC_1039 mutH; methyl-directed mismatch repair protein K03573 mutH; DNA mismatch repair protein MutH
D YPC_0390 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D YPC_2591 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D YPC_3059 xseA; exonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D YPC_3460 xseB; exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D YPC_0918 recJ; ssDNA exonuclease, 5' --> 3'-specific K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D YPC_0679 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D YPC_4831 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D YPC_1098 dnaE; DNA polymerase III, alpha chain K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D YPC_4617 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D YPC_3403 dnaX; Holliday junction DNA helicase RuvB K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D YPC_3267 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D YPC_1705 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D YPC_1128 dnaQ; DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D YPC_2497 holE; DNA polymerase III, theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D YPC_3779 holC; DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D YPC_4167 holD; DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D YPC_0201 ligB; putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D YPC_1396 ligA; DNA ligase, NAD(+)-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D YPC_0090 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D YPC_2223 putative methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
C 03440 Homologous recombination [PATH:yph03440]
D YPC_0918 recJ; ssDNA exonuclease, 5' --> 3'-specific K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D YPC_0679 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D YPC_4616 recF; gap repair protein K03629 recF; DNA replication and repair protein RecF
D YPC_3130 recO; gap repair protein K03584 recO; DNA repair protein RecO (recombination protein O)
D YPC_3401 recR; gap repair protein K06187 recR; recombination protein RecR
D YPC_3622 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA
D YPC_4238 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D YPC_2258 ruvA; component of RuvABC resolvasome, regulatory subunit K03550 ruvA; holliday junction DNA helicase RuvA
D YPC_2257 ruvB; ATP-dependent DNA helicase, component of RuvABC resolvasome K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D YPC_2259 ruvC; component of RuvABC resolvasome, endonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D YPC_0196 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D YPC_1049 recC; exonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D YPC_4831 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D YPC_1098 dnaE; DNA polymerase III, alpha chain K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D YPC_4617 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D YPC_3403 dnaX; Holliday junction DNA helicase RuvB K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D YPC_3267 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D YPC_1705 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D YPC_1128 dnaQ; DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D YPC_2497 holE; DNA polymerase III, theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D YPC_3779 holC; DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D YPC_4167 holD; DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D YPC_0273 priA; transcription-repair coupling factor K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D YPC_0607 priB; primosomal protein N K02686 priB; primosomal replication protein N
D YPC_3408 priC; primosomal replication protein n'' K04067 priC; primosomal replication protein N''
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1 [PATH:yph03250]
D YPC_0105 ppiA; peptidyl-prolyl cis-trans isomerase A rotamase A K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus and Lyssavirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:yph02010]
D YPC_1364 Sulfate and thiosulfate binding protein cysP K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D YPC_0241 sbp; sulfate transporter subunit; periplasmic-binding component of ABC superfamily K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D YPC_1365 sulfate transport system permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D YPC_1366 cysW; sulfate transport system permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D YPC_1367 cysA; sulfate/thiosulfate transporter subunit; ATP-binding component of ABC superfamily K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D YPC_0119 tauA; putative taurine-binding periplasmic protein precursor K15551 tauA; taurine transport system substrate-binding protein
D YPC_0121 tauC; putative taurine transport system permease protein K15552 tauC; taurine transport system permease protein
D YPC_0120 tauB; putative taurine transport ATP-binding protein K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7]
D YPC_4390 ssuA; putative aliphatic sulfonates binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D YPC_4388 ssuC; putative aliphatic sulfonates transport permease protein K15554 ssuC; sulfonate transport system permease protein
D YPC_4387 ssuB; putative aliphatic sulfonates transport ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D YPC_1201 modA; molybdate transporter subunit; periplasmic-binding component of ABC superfamily K02020 modA; molybdate transport system substrate-binding protein
D YPC_0242 Hypothetical ABC transport system, periplasmiccomponent K02020 modA; molybdate transport system substrate-binding protein
D YPC_1202 modB; molybdate transporter subunit; membrane component of ABC superfamily K02018 modB; molybdate transport system permease protein
D YPC_1203 modC; molybdate transporter subunit; ATP-binding component of ABC superfamily K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D YPC_1197 modF; ATP-binding component of molybdate ABC transporter K05776 modF; molybdate transport system ATP-binding protein
D YPC_1323 putative exported protein K02012 afuA; iron(III) transport system substrate-binding protein
D YPC_1439 yfuA; iron(III)-binding periplasmic protein K02012 afuA; iron(III) transport system substrate-binding protein
D YPC_1324 putative binding protein-dependent transport system, inner-membrane component K02011 afuB; iron(III) transport system permease protein
D YPC_1437 Ferric iron ABC transporter, permease protein K02011 afuB; iron(III) transport system permease protein
D YPC_1438 Ferric iron ABC transporter, permease protein K02011 afuB; iron(III) transport system permease protein
D YPC_1325 putative ABC-transporter, ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D YPC_1436 yfuC; iron(III)-transport ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D YPC_4036 tbpA; periplasmic-binding component of thiamin ABC transporter K02064 thiB; thiamine transport system substrate-binding protein
D YPC_4035 thiP; membrane component of thiamin ABC transporter K02063 thiP; thiamine transport system permease protein
D YPC_4034 thiQ; ATP-binding component of thiamin ABC transporter K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D YPC_2855 potF; putrescine transporter subunit: periplasmic-binding component of ABC superfamily K11073 potF; putrescine transport system substrate-binding protein
D YPC_2852 potI; putrescine transporter subunit: membrane component of ABC superfamily K11074 potI; putrescine transport system permease protein
D YPC_2853 potH; putrescine transporter subunit: membrane component of ABC superfamily K11075 potH; putrescine transport system permease protein
D YPC_2854 potG; putrescine transporter subunit: ATP-binding component of ABC superfamily K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D YPC_3215 proX; glycine betaine transporter subunit; periplasmic-binding component of ABC superfamily K02002 proX; glycine betaine/proline transport system substrate-binding protein
D YPC_3214 proW; glycine betaine transporter subunit; membrane component of ABC superfamily K02001 proW; glycine betaine/proline transport system permease protein
D YPC_3213 proV; glycine betaine/L-proline transport ATP-binding protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D YPC_3016 Glycine betaine-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein
D YPC_3015 Glycine betaine-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein
D YPC_3012 putative ABC transport integral membrane subunit K05846 opuBD; osmoprotectant transport system permease protein
D YPC_3014 putative ABC transport integral membrane subunit K05846 opuBD; osmoprotectant transport system permease protein
D YPC_3013 putative ABC transport ATP-binding subunit K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D YPC_0037 malE; maltose-binding periplasmic protein precursor K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D YPC_0036 malF; maltose transport system permease protein MalF K10109 malF; maltose/maltodextrin transport system permease protein
D YPC_0035 malG; maltose transport system permease protein MalG K10110 malG; maltose/maltodextrin transport system permease protein
D YPC_0039 malK; maltose/maltodextrin transport ATP-binding protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPC_1648 mtlK; putative mannitol transport ATP-binding protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPC_0956 ganK; ATP-binding component of an ABC superfamily oligogalactan transporter K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPC_2359 maltose/maltodextrin transporter ATP-binding protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPC_2360 putative binding-protein-dependent transport system, ATP-binding component K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPC_3970 putative transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPC_3808 putative sugar ABC transporter, ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPC_0957 ganE; periplasmic-binding component of an ABC superfamily oligogalactan transporter K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein
D YPC_0958 ganF; membrane component of an ABC superfamily oligogalactan transporter K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D YPC_0959 ganG; membrane component of an ABC superfamily oligogalactan transporter K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D YPC_2097 putative sugar-binding protein K10192 togB; oligogalacturonide transport system substrate-binding protein
D YPC_2096 putative sugar ABC transporter K10195 togA; oligogalacturonide transport system ATP-binding protein
D YPC_4286 yrbC; putative ABC-type organic solvent transporter K07323 mlaC; phospholipid transport system substrate-binding protein
D YPC_4287 yrbD; putative ABC-type organic solvent transporter K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D YPC_4288 yrbE; putative toluene transporter subunit: membrane component of ABC superfamily K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D YPC_4285 yrbB; hypothetical protein K07122 mlaB; phospholipid transport system transporter-binding protein
D YPC_4289 yrbF; putative toluene transporter subunit: ATP-binding component of ABC superfamily K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D YPC_4467 sugar-binding transport protein K10439 rbsB; ribose transport system substrate-binding protein
D YPC_0840 putative sugar ABC transporter periplasmic binding protein K10439 rbsB; ribose transport system substrate-binding protein
D YPC_1624 rbsB; sugar binding protein precursor K10439 rbsB; ribose transport system substrate-binding protein
D YPC_4468 sugar transport system permease protein K10440 rbsC; ribose transport system permease protein
D YPC_0842 putative sugar transport system permease protein K10440 rbsC; ribose transport system permease protein
D YPC_1626 putative sugar transport system, permease protein K10440 rbsC; ribose transport system permease protein
D YPC_4469 sugar transport ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D YPC_0841 putative sugar transport ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D YPC_1625 putative sugar transport system, ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D YPC_0007 rbsD; D-ribose pyranase K06726 rbsD; D-ribose pyranase [EC:5.4.99.62]
D YPC_1886 araF; L-arabinose-binding periplasmic protein precursor AraF K10537 araF; L-arabinose transport system substrate-binding protein
D YPC_1888 araH; L-arabinose transport system permease protein K10538 araH; L-arabinose transport system permease protein
D YPC_1887 araG; L-arabinose transport ATP-binding protein AraG K10539 araG; L-arabinose transport system ATP-binding protein [EC:7.5.2.12]
D YPC_0315 putative periplasmic protein precursor K23508 ytfQ; galactofuranose transport system substrate-binding protein
D YPC_0316 putative sugar transport system ATP-binding protein K10820 ytfR; galactofuranose transport system ATP-binding protein [EC:7.5.2.9]
D YPC_2646 mglB; galactose-binding protein K10540 mglB; methyl-galactoside transport system substrate-binding protein
D YPC_2644 mglC; galactoside permease K10541 mglC; methyl-galactoside transport system permease protein
D YPC_2645 mglA; galactoside transport ATP-binding protein K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11]
D YPC_4550 sugar-binding periplasmic protein K10543 xylF; D-xylose transport system substrate-binding protein
D YPC_4548 sugar transport system permease protein K10544 xylH; D-xylose transport system permease protein
D YPC_4549 sugar transport ATP-binding protein K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10]
D YPC_3634 putative sugar ABC transporter, periplasmic protein K17202 eryG; erythritol transport system substrate-binding protein
D YPC_3631 putative sugar ABC transporter, permease protein K17203 eryF; erythritol transport system permease protein
D YPC_3632 putative sugar ABC transporter, ATP-binding protein K17204 eryE; erythritol transport system ATP-binding protein
D YPC_0953 sugar-binding periplasmic protein K17205 xltC; putative xylitol transport system substrate-binding protein
D YPC_0954 sugar transport system permease K17206 xltB; putative xylitol transport system permease protein
D YPC_0955 sugar transport ATP-binding protein K17207 xltA; putative xylitol transport system ATP-binding protein
D YPC_3296 putative sugar-binding periplasmic protein K17208 ibpA; inositol transport system substrate-binding protein
D YPC_3294 sugar transport system permease protein K17209 iatP; inositol transport system permease protein
D YPC_3295 sugar transport ATP-binding protein K17210 iatA; inositol transport system ATP-binding protein
D YPC_0443 ugpB; glycerol-3-phosphate-binding periplasmic protein K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein
D YPC_0444 ugpA; glycerol-3-phosphate transporter subunit; membrane component of ABC superfamily K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein
D YPC_0445 ugpE; glycerol-3-phosphate transporter subunit; membrane component of ABC superfamily K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein
D YPC_0446 ugpC; glycerol-3-phosphate transporter subunit; ATP-binding component of ABC superfamily K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10]
D YPC_3489 pstS; phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein
D YPC_4640 phosphate transporter subunit; periplasmic-binding component of ABC superfamily K02040 pstS; phosphate transport system substrate-binding protein
D YPC_4639 pstC; phosphate transporter subunit; membrane component of ABC superfamily K02037 pstC; phosphate transport system permease protein
D YPC_4638 pstA; phosphate transporter subunit; membrane component of ABC superfamily K02038 pstA; phosphate transport system permease protein
D YPC_1289 putative phosphate transport ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D YPC_4637 pstB; phosphate transporter subunit; ATP-binding component of ABC superfamily K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D YPC_3029 putative substrate-binding periplasmic transport protein K02044 phnD; phosphonate transport system substrate-binding protein
D YPC_3026 Phosphonate ABC transporter permease protein PhnE1 K02042 phnE; phosphonate transport system permease protein
D YPC_3028 putative ABC transport membrane permease K02042 phnE; phosphonate transport system permease protein
D YPC_3030 putative ABC transport ATP-binding subunit K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D YPC_1531 hisM; histidine/lysine/arginine/ornithine transporter subunit; membrane component of ABC superfamily K10015 hisM; histidine transport system permease protein
D YPC_1530 hisQ; histidine/lysine/arginine/ornithine transporter subunit; membrane component of ABC superfamily K10016 hisQ; histidine transport system permease protein
D YPC_1532 hisP; histidine/lysine/arginine/ornithine transporter subunit; ATP-binding component of ABC superfamily K10017 hisP; histidine transport system ATP-binding protein [EC:7.4.2.1]
D YPC_1529 hisJ; histidine-binding periplasmic protein K10014 hisJ; histidine transport system substrate-binding protein
D YPC_1611 glnH; glutamine transporter subunit; periplasmic binding component of ABC superfamily K10036 glnH; glutamine transport system substrate-binding protein
D YPC_1610 glnP; glutamine transporter subunit; membrane component of ABC superfamily K10037 glnP; glutamine transport system permease protein
D YPC_1609 glnQ; glutamine transporter subunit; ATP-binding component of ABC superfamily K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1]
D YPC_2849 ABC transporter, periplasmic arginine-bindingprotein artI precursor K09996 artJ; arginine transport system substrate-binding protein
D YPC_2835 artI; arginine transporter subunit; periplasmic-binding component of ABC superfamily K09997 artI; arginine transport system substrate-binding protein
D YPC_2837 artM; arginine transporter subunit; membrane component of ABC superfamily K09998 artM; arginine transport system permease protein
D YPC_2836 artQ; arginine transporter subunit; membrane component of ABC superfamily K09999 artQ; arginine transport system permease protein
D YPC_2834 artP; arginine transporter subunit; ATP-binding component of ABC superfamily K10000 artP; arginine transport system ATP-binding protein [EC:7.4.2.1]
D YPC_3259 gltI; glutamate and aspartate transporter subunit, periplasmic-binding component of ABC superfamily K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D YPC_3261 gltK; glutamate and aspartate transporter subunit, membrane component of ABC superfamily K10002 gltK; glutamate/aspartate transport system permease protein
D YPC_3260 gltJ; glutamate and aspartate transporter subunit, membrane component of ABC superfamily K10003 gltJ; glutamate/aspartate transport system permease protein
D YPC_3262 gltL; glutamate and aspartate transporter subunit, ATP-binding component of ABC superfamily K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D YPC_2418 fliY; cystine transporter subunit; periplasmic-binding component of ABC superfamily K02424 tcyA; L-cystine transport system substrate-binding protein
D YPC_2417 yecS; putative transporter subunit: membrane component of ABC superfamily K10009 tcyB; L-cystine transport system permease protein
D YPC_2416 yecC; putative transporter subunit: ATP-binding component of ABC superfamily K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D YPC_0430 livK; branched-chain amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D YPC_0431 livH; leucine/isoleucine/valine transporter subunit; membrane component of ABC superfamily K01997 livH; branched-chain amino acid transport system permease protein
D YPC_0432 livM; leucine/isoleucine/valine transporter subunit; membrane component of ABC superfamily K01998 livM; branched-chain amino acid transport system permease protein
D YPC_0433 livG; leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily K01995 livG; branched-chain amino acid transport system ATP-binding protein
D YPC_0434 livF; leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily K01996 livF; branched-chain amino acid transport system ATP-binding protein
D YPC_1111 putative lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein
D YPC_2873 putative exported protein K02073 metQ; D-methionine transport system substrate-binding protein
D YPC_1112 metI; membrane component of DL-methionine uptake transporter (MUT) K02072 metI; D-methionine transport system permease protein
D YPC_2871 putative ABC transport integral membrane subunit K02072 metI; D-methionine transport system permease protein
D YPC_1113 metN; ATP-binding component of DL-methionine uptake transporter (MUT) K02071 metN; D-methionine transport system ATP-binding protein
D YPC_2872 putative ABC transport ATP-binding subunit K02071 metN; D-methionine transport system ATP-binding protein
D YPC_3024 putative substrate-binding periplasmic transport protein K11959 urtA; urea transport system substrate-binding protein
D YPC_3023 putative Branched-chain amino acid transport system, permease component K11960 urtB; urea transport system permease protein
D YPC_3021 putative ABC transport ATP-binding subunit K11962 urtD; urea transport system ATP-binding protein
D YPC_3020 putative ABC transport ATP-binding subunit K11963 urtE; urea transport system ATP-binding protein
D YPC_1211 putative amino acid transporter K11963 urtE; urea transport system ATP-binding protein
D YPC_1969 mppA; putative periplasmic murein peptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D YPC_1804 oppA; periplasmic oligopeptide-binding protein precursor K15580 oppA; oligopeptide transport system substrate-binding protein
D YPC_1805 oppB; oligopeptide transporter subunit; membrane component of ABC superfamily K15581 oppB; oligopeptide transport system permease protein
D YPC_1806 oppC; oligopeptide transport system permease protein K15582 oppC; oligopeptide transport system permease protein
D YPC_1807 oppD; oligopeptide transporter subunit; ATP-binding component of ABC superfamily K15583 oppD; oligopeptide transport system ATP-binding protein
D YPC_1808 oppF; ATP-binding subunit of oligopeptide ABC transporter K10823 oppF; oligopeptide transport system ATP-binding protein
D YPC_4513 dppA; periplasmic dipeptide transport protein K12368 dppA; dipeptide transport system substrate-binding protein
D YPC_4512 dppB; dipeptide transporter; membrane component of ABC superfamily K12369 dppB; dipeptide transport system permease protein
D YPC_4510 dppC; dipeptide transporter; membrane component of ABC superfamily K12370 dppC; dipeptide transport system permease protein
D YPC_4509 dppD; dipeptide transporter; ATP-binding component of ABC superfamily K12371 dppD; dipeptide transport system ATP-binding protein
D YPC_4508 dppF; dipeptide transporter; ATP-binding component of ABC superfamily K12372 dppF; dipeptide transport system ATP-binding protein
D YPC_1987 sapA; peptide transport periplasmic protein precursor K19226 sapA; cationic peptide transport system substrate-binding protein
D YPC_1988 sapB; putative antimicrobial peptide transporter subunit; membrane component of ABC superfamily K19227 sapB; cationic peptide transport system permease protein
D YPC_1989 sapC; putative antimicrobial peptide transporter subunit; membrane component of ABC superfamily K19228 sapC; cationic peptide transport system permease protein
D YPC_2925 yejA; putative oligopeptide transporter subunit; periplasmic-binding component of ABC superfamily K13893 yejA; microcin C transport system substrate-binding protein
D YPC_2926 yejB; putative oligopeptide transporter subunit; membrane component of ABC superfamily K13894 yejB; microcin C transport system permease protein
D YPC_2927 yejE; putative oligopeptide transporter subunit; membrane component of ABC superfamily K13895 yejE; microcin C transport system permease protein
D YPC_2928 putative ABC transporter ATP-binding protein K13896 yejF; microcin C transport system ATP-binding protein
D YPC_3873 periplasmic binding protein K23185 fepB; ferric enterobactin transport system substrate-binding protein
D YPC_2615 putative iron-siderophore transport system, periplasmic binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein
D YPC_2618 putative iron-siderophore transport system, membrane permease component K23187 fepG; iron-siderophore transport system permease protein
D YPC_2619 putative iron-siderophore transport system, ATP-binding component K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]
D YPC_3720 fhuD; iron-hydroxamate transporter subunit; periplasmic-binding component of ABC superfamily K23227 fhuD; ferric hydroxamate transport system substrate-binding protein
D YPC_3719 fhuB; membrane component of ABC superfamily iron-hydroxamate transporter K23228 fhuB; ferric hydroxamate transport system permease protein
D YPC_3721 fhuC; ATP-binding component of iron-hydroxamate transporter K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16]
D YPC_3711 btuF; Vitamin B12 ABC transporter, B12-bindingcomponent BtuF K06858 btuF; vitamin B12 transport system substrate-binding protein
D YPC_2060 btuC; vitamin B12 transporter subunit: membrane component of ABC superfamily K06073 btuC; vitamin B12 transport system permease protein
D YPC_2058 btuD; vitamin B12 transporter subunit : ATP-binding component of ABC superfamily K06074 btuD; vitamin B12 transport system ATP-binding protein [EC:7.6.2.8]
D YPC_2254 znuA; High-affinity zinc uptake system periplasmic protein K09815 znuA; zinc transport system substrate-binding protein
D YPC_2256 znuB; High-affinity zinc uptake system membrane protein K09816 znuB; zinc transport system permease protein
D YPC_2255 znuC; High-affinity zinc uptake system ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D YPC_2080 yfeA; periplasmic-binding protein K11604 sitA; manganese/iron transport system substrate-binding protein
D YPC_2081 yfeB; ATP-binding transport protein K11607 sitB; manganese/iron transport system ATP-binding protein
D YPC_4194 putative periplasmic solute-binding protein K10555 lsrB; AI-2 transport system substrate-binding protein
D YPC_4191 putative ABC transporter permease protein K10556 lsrC; AI-2 transport system permease protein
D YPC_4190 ribose ABC transporter, ATP-binding protein K10558 lsrA; AI-2 transport system ATP-binding protein
D YPC_1726 lolC; outer membrane-specific lipoprotein transporter subunit; membrane component of ABC superfamily K09808 lolC_E; lipoprotein-releasing system permease protein
D YPC_1728 lolE; outer membrane-specific lipoprotein transporter subunit; membrane component of ABC superfamily K09808 lolC_E; lipoprotein-releasing system permease protein
D YPC_1727 lolD; outer membrane-specific lipoprotein transporter subunit; ATP-binding component of ABC superfamily K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D YPC_1488 ccmD; putative heme exporter protein D K02196 ccmD; heme exporter protein D
D YPC_1487 ccmC; putative heme exporter protein C K02195 ccmC; heme exporter protein C
D YPC_1486 ccmB; heme exporter protein B K02194 ccmB; heme exporter protein B
D YPC_1485 ccmA; putative heme exporter protein A K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D YPC_4295 putative ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D YPC_0423 ftsX; putative transporter subunit: membrane component of ABC superfamily K09811 ftsX; cell division transport system permease protein
D YPC_0422 ftsE; putative transporter subunit: ATP-binding component of ABC superfamily K09812 ftsE; cell division transport system ATP-binding protein
D YPC_0774 ABC-transporter transmembrane protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D YPC_0775 ABC-transporter transmembrane protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D YPC_2775 msbA; lipid transporter subunit of ABC superfamily; membrane component K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D YPC_3428 mdlA; putative ATP-binding component of multidrug ABC transporter K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D YPC_3427 mdlB; putative ATP-binding component of multidrug ABC transporter K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D YPC_0260 putative secretion ATPase K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D YPC_3289 putative ABC transport protein K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter
D YPC_0295 ABC transporter protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D YPC_2805 cydC; transport ATP-binding protein K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D YPC_2804 cydD; cysteine transporter subunit of ABC superfamily K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D YPC_1380 putative ABC transporter, ATP-binding protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D YPC_2817 Macrolide-specific ABC-type efflux carrier K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
C 02060 Phosphotransferase system (PTS) [PATH:yph02060]
D YPC_1042 Phosphocarrier protein kinase/phosphorylase,nitrogen regulation associated K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D YPC_1391 ptsI; PTS sytem, enzyme I component K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D YPC_1392 ptsH; phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr) K02784 ptsH; phosphocarrier protein HPr
D YPC_1390 crr; glucose-specific enzyme IIA component of PTS K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D YPC_1707 ptsG; PTS system, glucose-specific IIBC component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
D YPC_3238 nagE; pts system, N-acetylglucosamine-specific IIABC component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D YPC_4307 treB; PTS system, trehalose-specific IIBC component K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D YPC_4588 mtlA; PTS system, mannitol-specific IIABC component K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D YPC_3178 celC; PTS system, cellobiose-specific IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D YPC_3180 celA; PTS system, cellobiose-specific IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D YPC_3179 celB; PTS system, cellobiose-specific IIC component K02761 celB; cellobiose PTS system EIIC component
D YPC_2524 mannose-specific PTS enzyme K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D YPC_2525 manY; mannose-specific enzyme IIC component of PTS K02795 manY; mannose PTS system EIIC component
D YPC_2526 manZ; mannose-specific enzyme IID component of PTS K02796 manZ; mannose PTS system EIID component
D YPC_0982 putative PTS permease protein K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D YPC_0985 manX; putative PTS transport protein K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-]
D YPC_1542 phosphotransferase enzyme II, A component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D YPC_1540 hypothetical protein K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D YPC_1538 putative membrane protein K03475 ulaA; ascorbate PTS system EIIC component
D YPC_2894 fruB; IIA and HPr components of fructose-specific PTS enzyme K11183 fruB; multiphosphoryl transfer protein [EC:2.7.1.202]
D YPC_2892 fruA; PTS system, fructose-specific IIBC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D YPC_2893 fruK; fructose-1-phosphate kinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D YPC_1041 Phosphocarrier protein kinase/phosphorylase,nitrogen regulation associated K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D YPC_4301 npr; phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) K08485 ptsO; phosphocarrier protein NPr
D YPC_4299 ptsN; sugar-specific enzyme IIA component of PTS K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
C 03070 Bacterial secretion system [PATH:yph03070]
D YPC_3912 tolC; transport channel K12340 tolC; outer membrane protein
D YPC_4722 yscF; Type III secretion needle protein K03221 yscF; type III secretion protein F
D YPC_0752 putative type III secretion protein K03219 yscC; type III secretion protein C
D YPC_0745 type III secretion system apparatus lipoprotein K03222 yscJ; type III secretion protein J
D YPC_4726 yscJ; putative type III secretion lipoprotein K03222 yscJ; type III secretion protein J
D YPC_0742 secretion system apparatus protein K03230 yscV; type III secretion protein V
D YPC_0741 putative type III secretion system ATP synthase K03224 yscN; ATP synthase in type III secretion protein N [EC:7.4.2.8]
D YPC_0738 type III secretion system apparatus protein K03225 yscQ; type III secretion protein Q
D YPC_1005 general secretion pathway protein D K02453 gspD; general secretion pathway protein D
D YPC_1017 putative lipoprotein K02465 gspS; general secretion pathway protein S
D YPC_1004 general secretion pathway protein C K02452 gspC; general secretion pathway protein C
D YPC_1008 General secretion pathway protein F K02455 gspF; general secretion pathway protein F
D YPC_1009 general secretion pathway protein G K02456 gspG; general secretion pathway protein G
D YPC_1010 general secretion pathway protein H K02457 gspH; general secretion pathway protein H
D YPC_1011 general secretion pathway protein I K02458 gspI; general secretion pathway protein I
D YPC_1012 general secretion pathway protein J K02459 gspJ; general secretion pathway protein J
D YPC_1013 general secretion pathway protein K K02460 gspK; general secretion pathway protein K
D YPC_1014 general secretion pathway protein L K02461 gspL; general secretion pathway protein L
D YPC_1006 general secretion pathway protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D YPC_1016 prepilin peptidase K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-]
D YPC_3476 secD; SecYEG protein translocase auxillary subunit K03072 secD; preprotein translocase subunit SecD
D YPC_3475 secF; SecYEG protein translocase auxillary subunit K03074 secF; preprotein translocase subunit SecF
D YPC_0499 secE; preprotein translocase membrane subunit K03073 secE; preprotein translocase subunit SecE
D YPC_0564 secG; preprotein translocase membrane subunit K03075 secG; preprotein translocase subunit SecG
D YPC_0168 secY; preprotein translocase membrane subunit K03076 secY; preprotein translocase subunit SecY
D YPC_3477 yajC; SecYEG protein translocase auxillary subunit K03210 yajC; preprotein translocase subunit YajC
D YPC_4623 yidC; cytoplasmic insertase into membrane protein, Sec system K03217 yidC; YidC/Oxa1 family membrane protein insertase
D YPC_4076 secA; preprotein translocase subunit, ATPase K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D YPC_4075 secM; regulator of secA translation K13301 secM; secretion monitor
D YPC_0421 ftsY; membrane-binding signal recognition particle (SRP) receptor K03110 ftsY; fused signal recognition particle receptor
D YPC_0227 secB; protein export chaperone K03071 secB; preprotein translocase subunit SecB
D YPC_3605 ffh; Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D YPC_0461 tatA; component of Sec-independent translocase K03116 tatA; sec-independent protein translocase protein TatA
D YPC_0462 tatB; component of Sec-independent translocase K03117 tatB; sec-independent protein translocase protein TatB
D YPC_0463 tatC; component of Sec-independent translocase K03118 tatC; sec-independent protein translocase protein TatC
D YPC_3278 tatE; component of Sec-independent translocase K03425 tatE; sec-independent protein translocase protein TatE
D YPC_0029 Hemolysin activator protein precursor K11017 shlB; hemolysin activation/secretion protein
D YPC_2274 putative hemolysin activator protein K11017 shlB; hemolysin activation/secretion protein
D YPC_0028 hemolysin K11016 shlA; hemolysin
D YPC_2273 putative hemolysin K11016 shlA; hemolysin
D YPC_4753 Adhesin yadA precursor K12341 yadA; adhesin YadA
D YPC_2685 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPC_0825 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPC_1471 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPC_0785 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPC_4404 putative Rhs accessory genetic element K11904 vgrG; type VI secretion system secreted protein VgrG
D YPC_4415 putative Rhs accessory genetic element K11904 vgrG; type VI secretion system secreted protein VgrG
D YPC_4019 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPC_0044 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp
D YPC_4014 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp
D YPC_0823 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp
D YPC_1461 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp
D YPC_2687 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp
D YPC_4425 putative lipoprotein K11906 vasD; type VI secretion system protein VasD
D YPC_1462 putative exported protein precursor K11906 vasD; type VI secretion system protein VasD
D YPC_4024 putative lipoprotein K11906 vasD; type VI secretion system protein VasD
D YPC_2667 putative lipoprotein K11906 vasD; type VI secretion system protein VasD
D YPC_4418 putative exported protein K11891 impL; type VI secretion system protein ImpL
D YPC_1469 putative membrane protein precursor K11891 impL; type VI secretion system protein ImpL
D YPC_4028 putative membrane protein precursor K11891 impL; type VI secretion system protein ImpL
D YPC_2673 putative membrane protein K11891 impL; type VI secretion system protein ImpL
D YPC_4423 putative membrane protein K11892 impK; type VI secretion system protein ImpK
D YPC_0821 putative membrane protein K11892 impK; type VI secretion system protein ImpK
D YPC_1467 putative OmpA family protein K11892 impK; type VI secretion system protein ImpK
D YPC_2689 putative membrane protein K11892 impK; type VI secretion system protein ImpK
D YPC_1464 Flagellar motor rotation protein motB K11892 impK; type VI secretion system protein ImpK
D YPC_4018 ClpB protein K11907 vasG; type VI secretion system protein VasG
D YPC_4422 ClpB protein K11907 vasG; type VI secretion system protein VasG
D YPC_0824 Clp ATPase K11907 vasG; type VI secretion system protein VasG
D YPC_1452 ClpB protein K11907 vasG; type VI secretion system protein VasG
D YPC_2686 ClpB protein K11907 vasG; type VI secretion system protein VasG
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:yph02020]
D YPC_3490 phoR; sensory histidine kinase in two-component regulatory system with PhoB K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D YPC_3491 phoB; osmolarity response regulator K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D YPC_1370 putative two-component response regulator K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D YPC_1922 phoA; alkaline phosphatase precursor K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D YPC_3489 pstS; phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein
D YPC_4640 phosphate transporter subunit; periplasmic-binding component of ABC superfamily K02040 pstS; phosphate transport system substrate-binding protein
D YPC_1735 phoQ; sensory histidine kinase in two-compoent regulatory system with PhoP K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D YPC_1736 phoP; DNA-binding response regulator in two-component regulatory system with PhoQ K07660 phoP; two-component system, OmpR family, response regulator PhoP
D YPC_0073 envZ; sensory histidine kinase in two-component regulatory system with OmpR K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D YPC_0072 ompR; DNA-binding response regulator in two-component regulatory system with EnvZ K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D YPC_2985 ompC; outer membrane protein C, porin K09475 ompC; outer membrane pore protein C
D YPC_2755 ompF; putative outer membrane porin C protein K09476 ompF; outer membrane pore protein F
D YPC_0233 cpxA; sensory histidine kinase in two-component regulatory system with CpxR K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D YPC_0234 cpxR; DNA-binding response regulator in two-component regulatory system with CpxA K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D YPC_4089 putative membrane protein K25864 mzrA; modulator protein MzrA
D YPC_1935 Sensor protein rstB K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3]
D YPC_1934 rstA; DNA-binding response regulator in two-component regulatory system with RstB K07661 rstA; two-component system, OmpR family, response regulator RstA
D YPC_3708 htrA; periplasmic serine protease Do K04771 degP; serine protease Do [EC:3.4.21.107]
D YPC_0913 creC; putative histidine kinase sensor K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3]
D YPC_0912 creB; putative response regulator K07663 creB; two-component system, OmpR family, catabolic regulation response regulator CreB
D YPC_1270 Envelope stress sensory histidine kinase BaeS K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3]
D YPC_1269 baeR; DNA-binding response regulator in two-component regulatory system with BaeS K07664 baeR; two-component system, OmpR family, response regulator BaeR
D YPC_1274 mdtA; multidrug efflux system, subunit A K07799 mdtA; membrane fusion protein, multidrug efflux system
D YPC_1271 yegB; putative membrane protein K18326 mdtD; MFS transporter, DHA2 family, multidrug resistance protein
D YPC_0574 basS; sensory histidine kinase in two-component regulatory system with BasR K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3]
D YPC_0573 basR; two-component system response regulator K07771 basR; two-component system, OmpR family, response regulator BasR
D YPC_2057 arnB; UDP-4-amino-4-deoxy-L-arabinose alpha-ketoglutarate aminotransferase K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87]
D YPC_2321 putative two-component system sensor protein K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D YPC_2320 copR; transcriptional activator K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D YPC_1771 Flagellar transcriptional activator flhC K02402 flhC; flagellar transcriptional activator FlhC
D YPC_3835 lafA; lateral flagellin K02406 fliC; flagellin
D YPC_2424 fliC; thermoregulated motility protein K02406 fliC; flagellin
D YPC_2422 fliA; RNA polymerase sigma factor RpoD K02405 fliA; RNA polymerase sigma factor FliA
D YPC_1772 motA; chemotaxis MotA protein K02556 motA; chemotaxis protein MotA
D YPC_3167 kdpD; sensory histidine kinase in two-component regulatory system with KdpE K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D YPC_3168 kdpE; DNA-binding response regulator in two-component regulatory system with KdpD K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D YPC_3164 kdpA; P-type ATPase, high-affinity potassium transport system, A chain K01546 kdpA; potassium-transporting ATPase potassium-binding subunit
D YPC_3165 kdpB; putative potassium-transporting ATPase B chain K01547 kdpB; potassium-transporting ATPase ATP-binding subunit [EC:7.2.2.6]
D YPC_3166 kdpC; potassium translocating ATPase, subunit C K01548 kdpC; potassium-transporting ATPase KdpC subunit
D YPC_4267 arcB; aerobic respiration control sensor/response regulatory protein K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D YPC_4132 arcA; DNA-binding response regulator in two-component regulatory system with ArcB or CpxA K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA
D YPC_4618 dnaA; chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator K02313 dnaA; chromosomal replication initiator protein
D YPC_3593 putative anaerobic c4-dicarboxylate transportprotein K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D YPC_2642 sfcA; NAD-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D YPC_1336 narP; nitrate/nitrite response regulator protein NarP K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP
D YPC_0642 frdA; fumarate reductase flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D YPC_0643 frdB; electron transport complex protein RnfC K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D YPC_0644 frdC; fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C
D YPC_0645 frdD; fumarate reductase subunit D K00247 frdD; succinate dehydrogenase subunit D
D YPC_4519 uhpC; membrane protein regulates uhpT expression K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC
D YPC_4522 uhpA; DNA-binding response regulator in two-component regulatory system wtih UhpB K07686 uhpA; two-component system, NarL family, uhpT operon response regulator UhpA
D YPC_2566 putative GerR-family transcriptional regulatory protein K20264 fusR; two-component system, NarL family, response regulator FusR
D YPC_1110 rcsF; putative outer membrane protein, signal K06080 rcsF; RcsF protein
D YPC_2991 rcsC; hybrid sensory kinase in two-component regulatory system with RcsB and YojN K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D YPC_2988 putative regulator K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3]
D YPC_2989 putative 2-component sensor protein K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3]
D YPC_2990 rcsB; DNA-binding response regulator in two-component regulatory system with RcsC and YojN K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB
D YPC_3707 barA; hybrid sensory histidine kinase, in two-component regulatory system with UvrY K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D YPC_2397 uvrY; response regulator protein K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D YPC_3619 csrA; post transcriptional regulatory RNA-binding protein K03563 csrA; carbon storage regulator
D YPC_2120 putative exported protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPC_2125 putative membrane protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPC_2121 putative exported protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPC_2119 putative exported protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPC_0343 putative fimbrial chaperone K07346 fimC; fimbrial chaperone protein
D YPC_2106 putative chaperone protein K07346 fimC; fimbrial chaperone protein
D YPC_2122 putative chaperone protein K07346 fimC; fimbrial chaperone protein
D YPC_0342 putative outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPC_4839 caf1A; putative F1 capsule anchoring protein K07347 fimD; outer membrane usher protein
D YPC_1455 putative outer membrane fimbrial usher porinprecursor K07347 fimD; outer membrane usher protein
D YPC_2108 putative outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPC_2123 putative outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPC_2887 psaC; outer membrane usher protein PsaC precursor K07347 fimD; outer membrane usher protein
D YPC_3880 Flp pilus assembly protein RcpC/CpaB K02279 cpaB; pilus assembly protein CpaB
D YPC_3881 Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly K02280 cpaC; pilus assembly protein CpaC
D YPC_3883 Type II/IV secretion system ATPase TadZ/CpaE,associated with Flp pilus assembly K02282 cpaE; pilus assembly protein CpaE
D YPC_3884 Type II/IV secretion system ATP hydrolaseTadA/VirB11/CpaF, TadA subfamily K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D YPC_3885 Flp pilus assembly protein TadB K12510 tadB; tight adherence protein B
D YPC_3886 Type II/IV secretion system protein TadC,associated with Flp pilus assembly K12511 tadC; tight adherence protein C
D YPC_1080 glnD; uridylyltransferase/uridylyl-removing enzyme K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D YPC_3108 glnB; regulatory protein P-II for glutamine synthetase K04751 glnB; nitrogen regulatory protein P-II 1
D YPC_4227 glnL; sensory histidine kinase in two-component regulatory system with GlnG K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D YPC_4228 glnG; nitrogen regulation protein K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D YPC_4226 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D YPC_1237 Sensor protein of zinc sigma-54-dependenttwo-component system K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3]
D YPC_1238 Response regulator of zinc sigma-54-dependenttwo-component system K07713 zraR; two-component system, NtrC family, response regulator HydG
D YPC_1236 Zinc resistance-associated protein K07803 zraP; zinc resistance-associated protein
D YPC_4501 dctA; C4-dicarboxylic acid, orotate and citrate transporter K11103 dctA; aerobic C4-dicarboxylate transport protein
D YPC_4296 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D YPC_3112 two-component system sensor kinase K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D YPC_3110 yfhA; putative DNA-binding response regulator in two-component system K07715 glrR; two-component system, NtrC family, response regulator GlrR
D YPC_3115 glmY; glmS activator sRNA K15841 glmY; small regulatory RNA GlmY
D YPC_1785 cheR; chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D YPC_2975 tsr2; putative methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D YPC_1608 putative chemotactic transducer K03406 mcp; methyl-accepting chemotaxis protein
D YPC_1783 methyl-accepting chemotaxis protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D YPC_1021 putative methyl-accepting chemotaxis protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D YPC_4580 methyl-accepting chemotaxis protein II K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor
D YPC_1784 methyl-accepting chemotaxis protein K05877 tap; methyl-accepting chemotaxis protein IV, peptide sensor receptor
D YPC_1746 putative methyl-accepting chemotaxis protein K03776 aer; aerotaxis receptor
D YPC_1775 cheW; chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D YPC_1774 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D YPC_1787 cheY; chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D YPC_1786 cheB; protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D YPC_0754 two-component sensor/regulator K14978 ssrA; two-component system, LuxR family, secretion system sensor histidine kinase SsrA
D YPC_0755 putative two-component response regulator K14979 ssrB; two-component system, LuxR family, secretion system response regulator SsrB
D YPC_3860 Sigma-54 transcriptional regulatory protein K10943 flrC; two-component system, response regulator FlrC
D YPC_3262 gltL; glutamate and aspartate transporter subunit, ATP-binding component of ABC superfamily K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D YPC_3261 gltK; glutamate and aspartate transporter subunit, membrane component of ABC superfamily K10002 gltK; glutamate/aspartate transport system permease protein
D YPC_3260 gltJ; glutamate and aspartate transporter subunit, membrane component of ABC superfamily K10003 gltJ; glutamate/aspartate transport system permease protein
D YPC_3259 gltI; glutamate and aspartate transporter subunit, periplasmic-binding component of ABC superfamily K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D YPC_0111 crp; cyclic AMP receptor protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D YPC_0850 putative glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D YPC_1170 cydA; cytochrome D ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D YPC_1171 cydB; cytochrome D ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D YPC_1172 hypothetical protein K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7]
D YPC_1879 type I secretion system ATPase K12530 rtxB; ATP-binding cassette, subfamily B, bacterial RtxB
D YPC_1881 putative ABC associated RTX toxin transporter,HlyD/MFP family K12532 rtxD; membrane fusion protein, RTX toxin transport system
D YPC_1883 putative toxin transport protein K12531 rtxE; ATP-binding cassette, subfamily B, bacterial RtxE
D YPC_3912 tolC; transport channel K12340 tolC; outer membrane protein
D YPC_0358 rffE; UDP-N-acetyl glucosamine-2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D YPC_0359 rffD; UDP-N-acetyl-D-mannosamine dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
D YPC_4175 putative pectinesterase K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11]
D YPC_3852 putative flagellar regulatory protein K02398 flgM; negative regulator of flagellin synthesis FlgM
D YPC_2477 flgM; negative regulator of flagellin synthesis K02398 flgM; negative regulator of flagellin synthesis FlgM
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
D YPC_0839 speC; ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:yph02024]
D YPC_3610 luxS; S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D YPC_0626 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D YPC_1836 trpE; component I of anthranilate synthase K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D YPC_1835 trpG; anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D YPC_1187 Phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D YPC_3591 aroF; phospho-2-dehydro-3-deoxyheptonate aldolase, tyr-sensitive K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D YPC_2045 aroH; phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D YPC_3112 two-component system sensor kinase K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D YPC_3110 yfhA; putative DNA-binding response regulator in two-component system K07715 glrR; two-component system, NtrC family, response regulator GlrR
D YPC_1771 Flagellar transcriptional activator flhC K02402 flhC; flagellar transcriptional activator FlhC
D YPC_3168 kdpE; DNA-binding response regulator in two-component regulatory system with KdpD K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D YPC_2566 putative GerR-family transcriptional regulatory protein K20264 fusR; two-component system, NarL family, response regulator FusR
D YPC_4194 putative periplasmic solute-binding protein K10555 lsrB; AI-2 transport system substrate-binding protein
D YPC_4191 putative ABC transporter permease protein K10556 lsrC; AI-2 transport system permease protein
D YPC_4190 ribose ABC transporter, ATP-binding protein K10558 lsrA; AI-2 transport system ATP-binding protein
D YPC_4186 putative carbohydrate kinase K11216 lsrK; autoinducer-2 kinase [EC:2.7.1.189]
D YPC_4187 putative regulatory protein K11531 lsrR; lsr operon transcriptional repressor
D YPC_4195 putative aldolase K08321 lsrF; 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase [EC:2.3.1.245]
D YPC_4196 hypothetical protein K11530 lsrG; (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase [EC:5.3.1.32]
D YPC_1592 hypothetical protein K20268 rhiA; rhizosphere induced protein
D YPC_1278 putative transport system periplasmic protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D YPC_2293 ABC transporter periplasmic solute-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D YPC_1280 putative ABC transporter permease K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D YPC_2292 ABC transporter permease protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D YPC_1279 putative ABC transporter permease K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D YPC_2291 ABC transporter permease protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D YPC_1275 ABC transporter, ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D YPC_2290 ABC transporter ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D YPC_0430 livK; branched-chain amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D YPC_0431 livH; leucine/isoleucine/valine transporter subunit; membrane component of ABC superfamily K01997 livH; branched-chain amino acid transport system permease protein
D YPC_0432 livM; leucine/isoleucine/valine transporter subunit; membrane component of ABC superfamily K01998 livM; branched-chain amino acid transport system permease protein
D YPC_0433 livG; leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily K01995 livG; branched-chain amino acid transport system ATP-binding protein
D YPC_0434 livF; leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily K01996 livF; branched-chain amino acid transport system ATP-binding protein
D YPC_1671 ypeI; Homoserine lactone synthase YpeI K22956 expI; acyl homoserine lactone synthase [EC:2.3.1.184]
D YPC_0811 yspI; N-3-oxooctanoyl-L-homoserine lactone synthase;N-3-oxohexanoyl-L-homoserine lactone synthase K22956 expI; acyl homoserine lactone synthase [EC:2.3.1.184]
D YPC_1670 ypeR; quorum-sensing transcriptional activator YpeR K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR
D YPC_0810 yspR; quorum-sensing transcriptional regulator K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR
D YPC_4503 pelY; periplasmic pectate lyase precursor K01728 pel; pectate lyase [EC:4.2.2.2]
D YPC_4050 putative AMP-binding enzyme-family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D YPC_2238 fadD; acyl-CoA synthetase, long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D YPC_0111 crp; cyclic AMP receptor protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D YPC_0689 zur; transcriptional repressor of Zn transport system K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D YPC_1852 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D YPC_3469 ribD; tRNA-specific adenosine deaminase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D YPC_3820 ibeB; putative outer membrane efflux lipoprotein K18139 oprM; outer membrane protein, multidrug efflux system
D YPC_1969 mppA; putative periplasmic murein peptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D YPC_1804 oppA; periplasmic oligopeptide-binding protein precursor K15580 oppA; oligopeptide transport system substrate-binding protein
D YPC_1805 oppB; oligopeptide transporter subunit; membrane component of ABC superfamily K15581 oppB; oligopeptide transport system permease protein
D YPC_1806 oppC; oligopeptide transport system permease protein K15582 oppC; oligopeptide transport system permease protein
D YPC_1807 oppD; oligopeptide transporter subunit; ATP-binding component of ABC superfamily K15583 oppD; oligopeptide transport system ATP-binding protein
D YPC_1808 oppF; ATP-binding subunit of oligopeptide ABC transporter K10823 oppF; oligopeptide transport system ATP-binding protein
D YPC_3786 Dipeptide-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D YPC_3201 putative solute-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D YPC_3787 putative transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D YPC_3200 putative membrane protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D YPC_3788 putative transporter, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D YPC_3199 binding-protein-dependent transport protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D YPC_3789 putative ABC transporter transporter, ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D YPC_3790 putative ABC transporter, ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein
D YPC_4623 yidC; cytoplasmic insertase into membrane protein, Sec system K03217 yidC; YidC/Oxa1 family membrane protein insertase
D YPC_0499 secE; preprotein translocase membrane subunit K03073 secE; preprotein translocase subunit SecE
D YPC_0564 secG; preprotein translocase membrane subunit K03075 secG; preprotein translocase subunit SecG
D YPC_0168 secY; preprotein translocase membrane subunit K03076 secY; preprotein translocase subunit SecY
D YPC_3477 yajC; SecYEG protein translocase auxillary subunit K03210 yajC; preprotein translocase subunit YajC
D YPC_4076 secA; preprotein translocase subunit, ATPase K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D YPC_0421 ftsY; membrane-binding signal recognition particle (SRP) receptor K03110 ftsY; fused signal recognition particle receptor
D YPC_0227 secB; protein export chaperone K03071 secB; preprotein translocase subunit SecB
D YPC_3605 ffh; Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:yph02030]
D YPC_2975 tsr2; putative methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D YPC_1608 putative chemotactic transducer K03406 mcp; methyl-accepting chemotaxis protein
D YPC_1783 methyl-accepting chemotaxis protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D YPC_1021 putative methyl-accepting chemotaxis protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D YPC_4580 methyl-accepting chemotaxis protein II K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor
D YPC_1784 methyl-accepting chemotaxis protein K05877 tap; methyl-accepting chemotaxis protein IV, peptide sensor receptor
D YPC_1746 putative methyl-accepting chemotaxis protein K03776 aer; aerotaxis receptor
D YPC_0037 malE; maltose-binding periplasmic protein precursor K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D YPC_4467 sugar-binding transport protein K10439 rbsB; ribose transport system substrate-binding protein
D YPC_0840 putative sugar ABC transporter periplasmic binding protein K10439 rbsB; ribose transport system substrate-binding protein
D YPC_1624 rbsB; sugar binding protein precursor K10439 rbsB; ribose transport system substrate-binding protein
D YPC_2646 mglB; galactose-binding protein K10540 mglB; methyl-galactoside transport system substrate-binding protein
D YPC_4513 dppA; periplasmic dipeptide transport protein K12368 dppA; dipeptide transport system substrate-binding protein
D YPC_1774 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D YPC_1775 cheW; chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D YPC_1787 cheY; chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D YPC_1788 cheZ; chemotaxis protein CheZ K03414 cheZ; chemotaxis protein CheZ
D YPC_1786 cheB; protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D YPC_1785 cheR; chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D YPC_3857 Flagellar motor switch protein fliG K02410 fliG; flagellar motor switch protein FliG
D YPC_2437 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D YPC_3861 Flagellar motor switch protein fliM K02416 fliM; flagellar motor switch protein FliM
D YPC_2444 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D YPC_3862 Flagellar motor switch protein fliN K02417 fliN; flagellar motor switch protein FliN
D YPC_2445 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D YPC_1772 motA; chemotaxis MotA protein K02556 motA; chemotaxis protein MotA
D YPC_1773 motB; chemotaxis MotB protein K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:yph02040]
D YPC_3859 Flagellar hook-basal body complex protein fliE K02408 fliE; flagellar hook-basal body complex protein FliE
D YPC_2435 fliE; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D YPC_3858 Flagellar M-ring protein fliF K02409 fliF; flagellar M-ring protein FliF
D YPC_2436 fliF; flagellar M-ring protein K02409 fliF; flagellar M-ring protein FliF
D YPC_3857 Flagellar motor switch protein fliG K02410 fliG; flagellar motor switch protein FliG
D YPC_2437 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D YPC_3856 Flagellar assembly protein fliH K02411 fliH; flagellar assembly protein FliH
D YPC_2438 fliH; flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D YPC_3855 lfiI; lateral flagellar assembly ATPase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D YPC_2439 Flagellum-specific ATP synthase fliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D YPC_2440 fliJ; flagellar protein FliJ K02413 fliJ; flagellar protein FliJ
D YPC_2441 fliK; flagellar hook-length control protein FliK K02414 fliK; flagellar hook-length control protein FliK
D YPC_2443 fliL; flagellar protein FliL K02415 fliL; flagellar protein FliL
D YPC_3861 Flagellar motor switch protein fliM K02416 fliM; flagellar motor switch protein FliM
D YPC_2444 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D YPC_3862 Flagellar motor switch protein fliN K02417 fliN; flagellar motor switch protein FliN
D YPC_2445 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D YPC_2446 fliO; flagellar protein FliO K02418 fliO; flagellar protein FliO/FliZ
D YPC_3863 Flagellar biosynthesis protein fliP K02419 fliP; flagellar biosynthesis protein FliP
D YPC_2447 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D YPC_3864 Flagellar biosynthesis protein fliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D YPC_2448 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D YPC_3865 Flagellar biosynthesis protein fliR K02421 fliR; flagellar biosynthesis protein FliR
D YPC_2449 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D YPC_2483 flhE; flagellar protein FlhE precursor K03516 flhE; flagellar protein FlhE
D YPC_3867 Flagellar biosynthesis protein flhA K02400 flhA; flagellar biosynthesis protein FlhA
D YPC_3866 lfhB; lateral flagellar export and assembly protein K02401 flhB; flagellar biosynthesis protein FlhB
D YPC_2486 Flagellar biosynthesis protein flhB K02401 flhB; flagellar biosynthesis protein FlhB
D YPC_3851 Flagellar basal-body P-ring formation proteinflgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D YPC_2476 flgA; flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D YPC_3850 lfgB; Flagellar basal-body rod protein flgB K02387 flgB; flagellar basal-body rod protein FlgB
D YPC_2475 flgB; flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D YPC_3849 lfgC; Flagellar basal-body rod protein flgC K02388 flgC; flagellar basal-body rod protein FlgC
D YPC_2474 flgC; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D YPC_3848 lfgD; Flagellar basal-body rod modification proteinflgD K02389 flgD; flagellar basal-body rod modification protein FlgD
D YPC_2473 flgD; basal-body rod modification protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD
D YPC_3847 lfgE; Flagellar hook protein flgE K02390 flgE; flagellar hook protein FlgE
D YPC_2472 flgE; flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE
D YPC_3846 Flagellar basal-body rod protein flgF K02391 flgF; flagellar basal-body rod protein FlgF
D YPC_2471 Flagellar basal-body rod protein flgF K02391 flgF; flagellar basal-body rod protein FlgF
D YPC_3845 Flagellar basal-body rod protein flgG K02392 flgG; flagellar basal-body rod protein FlgG
D YPC_2470 Flagellar basal-body rod protein flgG K02392 flgG; flagellar basal-body rod protein FlgG
D YPC_3844 Flagellar L-ring protein flgH K02393 flgH; flagellar L-ring protein FlgH
D YPC_2469 flgH; flagellar L-ring protein precursor K02393 flgH; flagellar L-ring protein FlgH
D YPC_3843 Flagellar P-ring protein flgI K02394 flgI; flagellar P-ring protein FlgI
D YPC_2468 flgI; flagellar P-ring protein precursor K02394 flgI; flagellar P-ring protein FlgI
D YPC_3842 peptidoglycan hydrolase K02395 flgJ; peptidoglycan hydrolase FlgJ
D YPC_2467 flgJ; flagellar protein FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ
D YPC_3841 Flagellar hook-associated protein flgK K02396 flgK; flagellar hook-associated protein 1
D YPC_2462 flgK; flagellar hook-associated protein 1 K02396 flgK; flagellar hook-associated protein 1
D YPC_3840 lfgL; lateral flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D YPC_2461 flgL; flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D YPC_3835 lafA; lateral flagellin K02406 fliC; flagellin
D YPC_2424 fliC; thermoregulated motility protein K02406 fliC; flagellin
D YPC_2425 fliD; flagellar hook-associated protein 2 K02407 fliD; flagellar hook-associated protein 2
D YPC_2426 fliS; flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D YPC_2427 fliT; Flagellar biosynthesis protein fliT K02423 fliT; flagellar protein FliT
D YPC_1772 motA; chemotaxis MotA protein K02556 motA; chemotaxis protein MotA
D YPC_1773 motB; chemotaxis MotB protein K02557 motB; chemotaxis protein MotB
D YPC_3852 putative flagellar regulatory protein K02398 flgM; negative regulator of flagellin synthesis FlgM
D YPC_2477 flgM; negative regulator of flagellin synthesis K02398 flgM; negative regulator of flagellin synthesis FlgM
D YPC_3853 hypothetical protein K02399 flgN; flagellar biosynthesis protein FlgN
D YPC_2478 flgN; flagella synthesis protein FlgN K02399 flgN; flagellar biosynthesis protein FlgN
D YPC_2418 fliY; cystine transporter subunit; periplasmic-binding component of ABC superfamily K02424 tcyA; L-cystine transport system substrate-binding protein
D YPC_2420 fliZ; putative regulator of FliA activity K02425 fliZ; regulator of sigma S factor FliZ
D YPC_3935 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D YPC_1771 Flagellar transcriptional activator flhC K02402 flhC; flagellar transcriptional activator FlhC
D YPC_4296 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D YPC_3860 Sigma-54 transcriptional regulatory protein K10943 flrC; two-component system, response regulator FlrC
D YPC_2422 fliA; RNA polymerase sigma factor RpoD K02405 fliA; RNA polymerase sigma factor FliA
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D YPC_3700 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
D YPC_0027 metH; homocysteine-N5-methyltetrahydrofolate transmethylase, B12-dependent K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection [PATH:yph05135]
D YPC_4444 Invasin K13735 yeeJ; adhesin/invasin
D YPC_4753 Adhesin yadA precursor K12341 yadA; adhesin YadA
D YPC_4663 yopE; Translocated host-GTPase-activating protein K23473 yopE; outer membrane virulence protein YopE
D YPC_4734 yopH; translocated protein-tyrosine kinase, inhibitor of phagocytosis K23474 yopH; tyrosine-protein phosphatase YopH [EC:3.1.3.48]
D YPC_4694 yopD; putative secreted pore/translocation protein K23476 yopD; transloator
D YPC_4688 yopM; leucine-rich 15-repeat translocated effector protein K23478 yopM; outer membrane protein YopM
D YPC_4737 yopJ; cysteine protease, inhibitor of host MAP kinases and IKK K08598 yopJ; YopJ protease family
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
D YPC_4444 Invasin K13735 yeeJ; adhesin/invasin
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:yph01501]
D YPC_2755 ompF; putative outer membrane porin C protein K09476 ompF; outer membrane pore protein F
D YPC_2985 ompC; outer membrane protein C, porin K09475 ompC; outer membrane pore protein C
D YPC_3446 ampG; muropeptide transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D YPC_1715 nagZ; beta-N-acetylglucosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D YPC_1969 mppA; putative periplasmic murein peptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D YPC_1804 oppA; periplasmic oligopeptide-binding protein precursor K15580 oppA; oligopeptide transport system substrate-binding protein
D YPC_1805 oppB; oligopeptide transporter subunit; membrane component of ABC superfamily K15581 oppB; oligopeptide transport system permease protein
D YPC_1806 oppC; oligopeptide transport system permease protein K15582 oppC; oligopeptide transport system permease protein
D YPC_1807 oppD; oligopeptide transporter subunit; ATP-binding component of ABC superfamily K15583 oppD; oligopeptide transport system ATP-binding protein
D YPC_1808 oppF; ATP-binding subunit of oligopeptide ABC transporter K10823 oppF; oligopeptide transport system ATP-binding protein
D YPC_3413 acrA; multidrug efflux protein K03585 acrA; membrane fusion protein, multidrug efflux system
D YPC_3821 multidrug efflux protein K18138 acrB; multidrug efflux pump
D YPC_3414 acrB; multidrug efflux protein K18138 acrB; multidrug efflux pump
D YPC_0549 putative integral membrane efflux protein K18138 acrB; multidrug efflux pump
D YPC_3820 ibeB; putative outer membrane efflux lipoprotein K18139 oprM; outer membrane protein, multidrug efflux system
D YPC_3912 tolC; transport channel K12340 tolC; outer membrane protein
D YPC_0080 mrcA; Multimodular transpeptidase-transglycosylase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D YPC_3271 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D YPC_4061 ftsI; penicillin-binding protein 3 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:yph01502]
D YPC_4069 ddlB; D-alanine--D-alanine ligase B K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D YPC_0683 alr; alanine racemase 1, PLP-binding, biosynthetic K01775 alr; alanine racemase [EC:5.1.1.1]
D YPC_4063 murF; UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D YPC_4064 mraY; phospho-N-acetylmuramoyl-pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D YPC_4067 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:yph01503]
D YPC_1735 phoQ; sensory histidine kinase in two-compoent regulatory system with PhoP K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D YPC_1736 phoP; DNA-binding response regulator in two-component regulatory system with PhoQ K07660 phoP; two-component system, OmpR family, response regulator PhoP
D YPC_4523 eptB; putative metal dependent hydrolase K12975 eptB; KDO II ethanolaminephosphotransferase [EC:2.7.8.42]
D YPC_2537 Lipid A acylation protein PagP,palmitoyltransferase K12973 pagP; lipid IVA palmitoyltransferase [EC:2.3.1.251]
D YPC_2057 arnB; UDP-4-amino-4-deoxy-L-arabinose alpha-ketoglutarate aminotransferase K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87]
D YPC_2056 arnC; Undecaprenyl-phosphate 4-amino-4-deoxy-L-arabinose transferase K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53]
D YPC_2055 bifunctional UDP-L-Ara4N formyltransferase/UDP-GlcA C-4'-decarboxylase K10011 arnA; UDP-4-amino-4-deoxy-L-arabinose formyltransferase / UDP-glucuronic acid dehydrogenase (UDP-4-keto-hexauronic acid decarboxylating) [EC:2.1.2.13 1.1.1.305]
D YPC_2054 yfbH; conserved protein K13014 arnD; undecaprenyl phosphate-alpha-L-ara4FN deformylase [EC:3.5.1.-]
D YPC_2053 arnT; 4-amino-4-deoxy-L-arabinose transferase K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43]
D YPC_2052 putative membrane protein K12962 arnE; undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnE
D YPC_2051 Polymyxin resistance protein PmrM K12963 arnF; undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnF
D YPC_0574 basS; sensory histidine kinase in two-component regulatory system with BasR K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3]
D YPC_0573 basR; two-component system response regulator K07771 basR; two-component system, OmpR family, response regulator BasR
D YPC_2006 putative membrane protein precursor K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D YPC_1987 sapA; peptide transport periplasmic protein precursor K19226 sapA; cationic peptide transport system substrate-binding protein
D YPC_1988 sapB; putative antimicrobial peptide transporter subunit; membrane component of ABC superfamily K19227 sapB; cationic peptide transport system permease protein
D YPC_1989 sapC; putative antimicrobial peptide transporter subunit; membrane component of ABC superfamily K19228 sapC; cationic peptide transport system permease protein
D YPC_4478 metalloprotease K01406 prtC; serralysin [EC:3.4.24.40]
D YPC_1107 cutF; putative copper homeostasis lipoprotein K06079 cutF; copper homeostasis protein (lipoprotein)
D YPC_0233 cpxA; sensory histidine kinase in two-component regulatory system with CpxR K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D YPC_0234 cpxR; DNA-binding response regulator in two-component regulatory system with CpxA K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D YPC_0629 amiB; N-acetylmuramoyl-l-alanine amidase II K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D YPC_1054 amiC; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D YPC_2032 hypothetical protein K19236 ycfS; L,D-transpeptidase YcfS
D YPC_3708 htrA; periplasmic serine protease Do K04771 degP; serine protease Do [EC:3.4.21.107]
D YPC_4239 dsbA; periplasmic protein disulfide isomerase I K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D YPC_0105 ppiA; peptidyl-prolyl cis-trans isomerase A rotamase A K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D YPC_3413 acrA; multidrug efflux protein K03585 acrA; membrane fusion protein, multidrug efflux system
D YPC_3821 multidrug efflux protein K18138 acrB; multidrug efflux pump
D YPC_3414 acrB; multidrug efflux protein K18138 acrB; multidrug efflux pump
D YPC_0549 putative integral membrane efflux protein K18138 acrB; multidrug efflux pump
D YPC_3912 tolC; transport channel K12340 tolC; outer membrane protein
D YPC_1095 lpxA; UDP-N-acetylglucosamine acetyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:yph01000]
C 01001 Protein kinases [BR:yph01001]
D YPC_2547 hypothetical protein K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D YPC_3490 phoR; sensory histidine kinase in two-component regulatory system with PhoB K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D YPC_1735 phoQ; sensory histidine kinase in two-compoent regulatory system with PhoP K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D YPC_0073 envZ; sensory histidine kinase in two-component regulatory system with OmpR K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D YPC_1935 Sensor protein rstB K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3]
D YPC_0233 cpxA; sensory histidine kinase in two-component regulatory system with CpxR K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D YPC_0913 creC; putative histidine kinase sensor K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3]
D YPC_1270 Envelope stress sensory histidine kinase BaeS K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3]
D YPC_0574 basS; sensory histidine kinase in two-component regulatory system with BasR K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3]
D YPC_2321 putative two-component system sensor protein K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D YPC_3167 kdpD; sensory histidine kinase in two-component regulatory system with KdpE K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D YPC_4267 arcB; aerobic respiration control sensor/response regulatory protein K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D YPC_1383 putative two-component system sensor kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D YPC_2988 putative regulator K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3]
D YPC_2989 putative 2-component sensor protein K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3]
D YPC_2991 rcsC; hybrid sensory kinase in two-component regulatory system with RcsB and YojN K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D YPC_3707 barA; hybrid sensory histidine kinase, in two-component regulatory system with UvrY K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D YPC_4442 yehU; putative sensory kinase in two-component system with YehT K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D YPC_4227 glnL; sensory histidine kinase in two-component regulatory system with GlnG K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D YPC_1237 Sensor protein of zinc sigma-54-dependenttwo-component system K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3]
D YPC_3112 two-component system sensor kinase K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D YPC_1774 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D YPC_0754 two-component sensor/regulator K14978 ssrA; two-component system, LuxR family, secretion system sensor histidine kinase SsrA
C 01009 Protein phosphatases and associated proteins [BR:yph01009]
D YPC_0240 pfkA; 6-phosphofructokinase I K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D YPC_3399 htpG; molecular chaperone HSP90 family K04079 HSP90A; molecular chaperone HtpG
D YPC_4148 serB; 3-phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:yph01002]
D YPC_1016 prepilin peptidase K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-]
D YPC_3879 Type IV prepilin peptidase TadV/CpaA K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D YPC_4887 pla; coagulase/fibrinolysin precursor K08566 pla; plasminogen activator [EC:3.4.23.48]
D YPC_2974 pla2; putative outer membrane-associated protease K08566 pla; plasminogen activator [EC:3.4.23.48]
D YPC_3151 pcp; putative pyrrolidone-carboxylate peptidase K01304 pcp; pyroglutamyl-peptidase [EC:3.4.19.3]
D YPC_3056 guaA; GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D YPC_0260 putative secretion ATPase K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D YPC_2920 spr; putative peptidase, outer membrane lipoprotein K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]
D YPC_2016 ydhO; putative lipoprotein K19303 mepH; murein DD-endopeptidase [EC:3.4.-.-]
D YPC_2049 nlpC; putative lipoprotein K13695 nlpC; probable lipoprotein NlpC
D YPC_1525 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D YPC_4270 gltB; glutamate synthase, large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D YPC_4642 glmS; L-glutamine:D-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D YPC_3244 asnB; asparagine synthetase B K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D YPC_4737 yopJ; cysteine protease, inhibitor of host MAP kinases and IKK K08598 yopJ; YopJ protease family
D YPC_3457 yajL; conserved protein K03152 thiJ; protein deglycase [EC:3.5.1.124]
D YPC_2032 hypothetical protein K19236 ycfS; L,D-transpeptidase YcfS
D YPC_2760 ycbB; putative carboxypeptidase K21470 ycbB; L,D-transpeptidase YcbB
D YPC_1195 putative membrane protein K07052 K07052; CAAX protease family protein
D YPC_0812 putative membrane protein K07052 K07052; CAAX protease family protein
D YPC_2749 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D YPC_4480 prlC; oligopeptidase A K01414 prlC; oligopeptidase A [EC:3.4.24.70]
D YPC_4478 metalloprotease K01406 prtC; serralysin [EC:3.4.24.40]
D YPC_4330 putative phage-related protein K17733 cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]
D YPC_1050 ptr; protease III K01407 ptrA; protease III [EC:3.4.24.55]
D YPC_4500 yhjJ; putative zinc-dependent peptidase K07263 pqqL; zinc protease [EC:3.4.24.-]
D YPC_3778 pepA; aminopeptidase A, a cyteinylglycinase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D YPC_3084 pepB; aminopeptidase B K07751 pepB; PepB aminopeptidase [EC:3.4.11.23]
D YPC_1319 dapE; N-succinyl-diaminopimelate deacylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D YPC_0538 putative peptidase K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
D YPC_1733 pepT; peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
D YPC_3522 pepD; aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D YPC_3548 putative amino acid hydrolase K02083 allC; allantoate deiminase [EC:3.5.3.9]
D YPC_2253 yebA; putative peptidase K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-]
D YPC_3655 methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D YPC_1081 map; methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D YPC_0475 pepQ; proline dipeptidase K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9]
D YPC_0895 pepP; proline aminopeptidase P II K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D YPC_1936 putative carboxypeptidase K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19]
D YPC_0567 ftsH; subunit of integral membrane ATP-dependent zinc metallopeptidase K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D YPC_2111 htpX; putative endopeptidase K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D YPC_0876 putative lipoprotein K07387 K07387; metalloprotease [EC:3.4.24.-]
D YPC_1301 yfgC; putative peptidase K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-]
D YPC_1090 rseP; inner membrane zinc RIP metalloprotease K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D YPC_1503 mepA; murein DD-endopeptidase K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-]
D YPC_2549 mtfA; conserved protein K09933 mtfA; MtfA peptidase
D YPC_1948 ydgD; putative peptidase K04775 ydgD; protease YdgD [EC:3.4.21.-]
D YPC_3708 htrA; periplasmic serine protease Do K04771 degP; serine protease Do [EC:3.4.21.107]
D YPC_4279 degQ; protease K04772 degQ; serine protease DegQ [EC:3.4.21.-]
D YPC_4282 degS; serine endoprotease, periplasmic K04691 hhoB; serine protease DegS [EC:3.4.21.-]
D YPC_2501 ptrB; protease II K01354 ptrB; oligopeptidase B [EC:3.4.21.83]
D YPC_3274 dacA; putative penicillin-binding protein 5 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D YPC_2870 dacC; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D YPC_3038 pbpG; Murein-DD-endopeptidase K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D YPC_2979 ampH; putative penicillin-binding protein K18988 ampH; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase [EC:3.4.16.4 3.4.21.-]
D YPC_0572 dacB; D-alanyl-D-alanine carboxypeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D YPC_3441 clpP; ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D YPC_3439 lon; DNA-binding ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D YPC_2730 ycbZ; putative peptidase K04770 lonH; Lon-like ATP-dependent protease [EC:3.4.21.-]
D YPC_0690 lexA; DNA-binding transcriptional repressor of SOS regulon K01356 lexA; repressor LexA [EC:3.4.21.88]
D YPC_3133 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D YPC_2498 Proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D YPC_2112 prc; carboxy-terminal protease for penicillin-binding protein 3 K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D YPC_1844 sohB; putative inner membrane peptidase K04774 sohB; serine protease SohB [EC:3.4.21.-]
D YPC_0055 glpG; intramembrane serine protease GlpG K02441 glpG; rhomboid protease GlpG [EC:3.4.21.105]
D YPC_0270 hslV; peptidase component of the HslUV protease K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D YPC_1267 yegQ; putative peptidase K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D YPC_3819 yhbV; putative protease K24845 ubiV; O2-independent ubiquinone biosynthesis protein UbiV
D YPC_3818 yhbU; peptidase, U32 family K24844 ubiU; O2-independent ubiquinone biosynthesis protein UbiU
D YPC_4313 pmbA; putative peptidase required for the maturation and secretion of the antibiotic peptide MccB17 K03592 pmbA; PmbA protein
D YPC_4335 tldD; putative modulator of DNA gyrase K03568 tldD; TldD protein
D YPC_2999 eco; ecotin, serine protease inhibitor K08276 eco; ecotin
D YPC_3304 putative membrane protein K06894 yfhM; alpha-2-macroglobulin
D YPC_0623 hflC; modulator for HflB protease specific for phage lambda cII repressor K04087 hflC; modulator of FtsH protease HflC
D YPC_0624 hflK; modulator for HflB protease specific for phage lambda cII repressor K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:yph01003]
D YPC_2339 putative glycosyl transferase K00720 UGCG; ceramide glucosyltransferase [EC:2.4.1.80]
D YPC_4437 glgA; glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21]
D YPC_4263 mtgA; biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D YPC_3307 Multimodular transpeptidase-transglycosylase K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D YPC_3722 mrcB; bifunctional glycosyl transferase/transpeptidase K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D YPC_0080 mrcA; Multimodular transpeptidase-transglycosylase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D YPC_0367 rffM; putative UDP-N-acetyl-D-mannosaminuronic acid transferase K02852 wecG; UDP-N-acetyl-D-mannosaminouronate:lipid I N-acetyl-D-mannosaminouronosyltransferase [EC:2.4.1.180]
D YPC_0365 4-alpha-L-fucosyltransferase K12582 wecF; dTDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase [EC:2.4.1.325]
D YPC_0356 rfe; Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:yph01005]
D YPC_1095 lpxA; UDP-N-acetylglucosamine acetyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D YPC_1096 lpxB; tetraacyldisaccharide-1-P synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D YPC_4073 lpxC; UDP-3-O-acyl N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D YPC_1093 lpxD; UDP-N-acetylglucosamine acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D YPC_3354 lpxH; UDP-2,3-diacylglucosamine pyrophosphatase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D YPC_2774 lpxK; lipid A 4' kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D YPC_2252 lpxM; lauroyl acyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243]
D YPC_4380 lipid A biosynthesis KDO2-lauroyl-lipid IVA acyltransferase K12974 lpxP; KDO2-lipid IV(A) palmitoleoyltransferase [EC:2.3.1.242]
D YPC_2918 yeiU; undecaprenyl pyrophosphate phosphatase K19803 lpxT; Kdo2-lipid A phosphotransferase [EC:2.7.4.29]
D YPC_0215 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D YPC_2053 arnT; 4-amino-4-deoxy-L-arabinose transferase K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43]
D YPC_2537 Lipid A acylation protein PagP,palmitoyltransferase K12973 pagP; lipid IVA palmitoyltransferase [EC:2.3.1.251]
D YPC_2006 putative membrane protein precursor K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D YPC_4523 eptB; putative metal dependent hydrolase K12975 eptB; KDO II ethanolaminephosphotransferase [EC:2.7.8.42]
D YPC_2298 kdsA; 3-deoxy-D-manno-octulosonate 8-phosphate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D YPC_2769 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D YPC_4292 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D YPC_4291 kdsD; D-arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D YPC_0216 rfaC; ADP-heptose:LPS heptosyl transferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D YPC_0214 kdtX; lipopolysaccharide core biosynthesis glycosyl transferase K12984 waaE; (heptosyl)LPS beta-1,4-glucosyltransferase [EC:2.4.1.-]
D YPC_0217 rfaF; ADP-heptose:LPS heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D YPC_4184 rfaQ; lipopolysaccharide core biosynthesis protein K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
D YPC_3537 gmhA; D-sedoheptulose 7-phosphate isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D YPC_1114 gmhB; D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D YPC_3922 rfaE; ADP-heptose synthase/D-glycero-beta-D-manno-heptose 7-phosphate kinase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D YPC_0218 rfaD; UDP-glucose 4-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D YPC_3388 putative glycosyltransferase K24673 wbyI; glycosyltransferase [EC:2.4.1.-]
D YPC_3387 wbyJ; putative mannosyltransferase K13000 wbyJ; mannosyltransferase [EC:2.4.1.-]
D YPC_3385 wbyK; putative mannosyltransferase K13001 wbyK; mannosyltransferase [EC:2.4.1.-]
D YPC_3380 wbyL; putative glycosyltransferase K13002 wbyL; glycosyltransferase [EC:2.4.1.-]
D YPC_0366 wzyE; Enterobacterial Common Antigen (ECA) polysaccharide chain polymerase K02853 wzyE; enterobacterial common antigen polymerase [EC:2.4.99.27]
D YPC_0356 rfe; Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:yph01011]
D YPC_4283 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D YPC_4068 murC; UDP-N-acetylmuramate:L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D YPC_4065 murD; UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D YPC_4062 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D YPC_4069 ddlB; D-alanine--D-alanine ligase B K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D YPC_0683 alr; alanine racemase 1, PLP-binding, biosynthetic K01775 alr; alanine racemase [EC:5.1.1.1]
D YPC_0306 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D YPC_4064 mraY; phospho-N-acetylmuramoyl-pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D YPC_4067 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D YPC_3928 bacA; undecaprenyl pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D YPC_2862 ybjG; putative permease K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D YPC_2275 yceN; putative inner membrane protein K03980 murJ; putative peptidoglycan lipid II flippase
D YPC_0080 mrcA; Multimodular transpeptidase-transglycosylase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D YPC_3722 mrcB; bifunctional glycosyl transferase/transpeptidase K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D YPC_3307 Multimodular transpeptidase-transglycosylase K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D YPC_3271 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D YPC_4061 ftsI; penicillin-binding protein 3 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D YPC_3274 dacA; putative penicillin-binding protein 5 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D YPC_2870 dacC; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D YPC_0572 dacB; D-alanyl-D-alanine carboxypeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D YPC_2979 ampH; putative penicillin-binding protein K18988 ampH; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase [EC:3.4.16.4 3.4.21.-]
D YPC_3038 pbpG; Murein-DD-endopeptidase K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D YPC_4263 mtgA; biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D YPC_2032 hypothetical protein K19236 ycfS; L,D-transpeptidase YcfS
D YPC_2760 ycbB; putative carboxypeptidase K21470 ycbB; L,D-transpeptidase YcbB
D YPC_1503 mepA; murein DD-endopeptidase K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-]
D YPC_2016 ydhO; putative lipoprotein K19303 mepH; murein DD-endopeptidase [EC:3.4.-.-]
D YPC_2920 spr; putative peptidase, outer membrane lipoprotein K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]
D YPC_2253 yebA; putative peptidase K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-]
D YPC_4330 putative phage-related protein K17733 cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]
D YPC_4138 slt; lytic murein transglycosylase, soluble K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D YPC_1057 mltA; membrane-bound lytic murein transglycosylase A K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29]
D YPC_1440 mltB; membrane-bound lytic murein transglycosylase B K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D YPC_2230 putative lipoprotein K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D YPC_0845 mltC; membrane-bound lytic murein transglycosylase C K08306 mltC; peptidoglycan lytic transglycosylase C [EC:4.2.2.29]
D YPC_1124 mltD; membrane-bound lytic murein transglycosylase D K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D YPC_2079 putative membrane-bound lytic murein transglycosylase K08308 mltE; peptidoglycan lytic transglycosylase E [EC:4.2.2.29]
D YPC_3120 yfhD; putative transglycosylase K18691 mltF; peptidoglycan lytic transglycosylase F [EC:4.2.2.29]
D YPC_1703 yceG; putative aminodeoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D YPC_3273 rlpA; minor lipoprotein K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D YPC_0629 amiB; N-acetylmuramoyl-l-alanine amidase II K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D YPC_1054 amiC; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D YPC_2102 putative N-acetylmuramoyl-L-alanine amidase K11066 amiD; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D YPC_3760 ampD; N-acetyl-anhydromuranmyl-L-alanine amidase K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28]
D YPC_2026 lpp; murein lipoprotein K06078 lpp; murein lipoprotein
C 01004 Lipid biosynthesis proteins [BR:yph01004]
D YPC_1695 fabD; malonyl-CoA-[acyl-carrier-protein] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D YPC_2693 putative acyl transferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D YPC_1694 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D YPC_1509 fabB; Beta-ketoacyl-ACP synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D YPC_2702 putative beta-ketoacyl-[acyl-carrier-protein] synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D YPC_1698 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D YPC_2735 3-oxoacyl-acyl carrier protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D YPC_1696 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D YPC_2701 putative beta-ketoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D YPC_2731 fabA; beta-hydroxydecanoyl thioester dehydrase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D YPC_1094 fabZ; (3R)-hydroxymyristol acyl carrier protein dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D YPC_2703 putative (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydrase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D YPC_4625 putative reductase K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D YPC_3359 tesA; multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D YPC_3424 tesB; acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D YPC_1821 yciA; esterase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
D YPC_3434 hypothetical protein K12500 tesC; thioesterase III [EC:3.1.2.-]
D YPC_0757 acs; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D YPC_4050 putative AMP-binding enzyme-family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D YPC_2238 fadD; acyl-CoA synthetase, long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D YPC_0692 plsB; glycerol-3-phosphate O-acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D YPC_1693 plsX; fatty acid/phospholipid synthesis protein K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D YPC_3930 ygiH; conserved inner membrane protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D YPC_3902 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins [BR:yph01008]
D YPC_2561 putative phosphopantetheinyl transferase K02362 entD; enterobactin synthetase component D [EC:6.3.2.14 2.7.8.-]
D YPC_0771 yersiniabactin biosynthetic protein YbtU K12241 pchG; pyochelin biosynthesis protein PchG
C 01006 Prenyltransferases [BR:yph01006]
D YPC_3461 ispA; geranyltranstransferase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D YPC_0579 ispB; octaprenyl diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D YPC_1088 ispU; undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D YPC_0627 miaA; delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D YPC_0268 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D YPC_0693 ubiA; p-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D YPC_3453 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
C 01007 Amino acid related enzymes [BR:yph01007]
D YPC_1405 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D YPC_3235 glnS; glutamyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D YPC_3727 glutamyl-Q-tRNA synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D YPC_1999 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D YPC_0093 trpS; tryptophan-tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D YPC_3352 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D YPC_2272 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D YPC_2630 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D YPC_4112 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D YPC_3780 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D YPC_3265 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D YPC_0920 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D YPC_2262 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D YPC_2753 asnS; asparaginyl tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D YPC_3067 hisS; histidyl tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D YPC_4593 glyQ; glycine tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D YPC_4592 glyS; glycine tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D YPC_2796 Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D YPC_1108 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D YPC_2070 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D YPC_3620 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D YPC_2064 pheS; phenylalanine tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D YPC_2063 pheT; phenylalanine tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D YPC_2756 aspC; aspartate transaminase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D YPC_4602 avtA; valine-pyruvate aminotransferase K00835 avtA; valine--pyruvate aminotransferase [EC:2.6.1.66]
D YPC_1556 yfbQ; putative aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D YPC_1420 yfdZ; prediected aminotransferase, PLP-dependent K14261 alaC; alanine-synthesizing transaminase [EC:2.6.1.-]
D YPC_0682 tyrB; tyrosine aminotransferase, tyrosine-repressible, PLP-dependent K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D YPC_2603 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D YPC_0219 kbl; glycine C-acetyltransferase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D YPC_1208 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D YPC_1374 putative aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D YPC_0108 Acetylornithine aminotransferase/N-succinyl-L,L-diaminopimelate aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D YPC_1277 goaG; putative aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D YPC_1206 bioA; adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D YPC_3717 hemL; Succinylornithine transaminase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D YPC_0324 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D YPC_2782 serC; 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D YPC_3549 Serine--pyruvate aminotransferase/L-alanine:glyoxylate aminotransferase K00839 pucG; (S)-ureidoglycine---glyoxylate transaminase [EC:2.6.1.112]
D YPC_2057 arnB; UDP-4-amino-4-deoxy-L-arabinose alpha-ketoglutarate aminotransferase K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87]
D YPC_0363 rffA; dTDP-4-keto-6-deoxy-D-glucose aminotransferase K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:yph00194]
D YPC_4645 atpC; F1 sector of membrane-bound ATP synthase, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D YPC_4646 atpD; F1 sector of membrane-bound ATP synthase, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D YPC_4648 atpG; F1 sector of membrane-bound ATP synthase, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D YPC_4649 atpA; F1 sector of membrane-bound ATP synthase, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D YPC_4650 atpH; F1 sector of membrane-bound ATP synthase, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D YPC_4651 atpF; F0 sector of membrane-bound ATP synthase, subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D YPC_4652 atpE; F0 sector of membrane-bound ATP synthase, subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D YPC_4653 atpB; F0 sector of membrane-bound ATP synthase, subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D YPC_4654 atpI; ATP synthase, membrane-bound accesory subunit K02116 atpI; ATP synthase protein I
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:yph03000]
D YPC_1889 araC; DNA-binding transcriptional dual regulator K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D YPC_0670 rhaR; transcriptional regulator, AraC family K02854 rhaR; AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR
D YPC_0672 rhaS; transcriptional activator RhaS K02855 rhaS; AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS
D YPC_3177 celD; cel operon repressor K03490 chbR; AraC family transcriptional regulator, dual regulator of chb operon
D YPC_4134 rob; DNA-binding transcriptional activator K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D YPC_4715 lcrF; putative thermoregulatory protein K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA
D YPC_0232 ada; bifunctional regulatory protein/DNA repair protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D YPC_1063 gcvA; DNA-binding transcriptional dual regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D YPC_0332 ilvY; DNA-binding transcriptional dual regulator K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D YPC_0450 metR; LysR family transcriptional regulator K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D YPC_4115 nhaR; DNA-binding transcriptional activator K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D YPC_0300 oxyR; DNA-binding transcriptional dual regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D YPC_0887 argP; DNA-binding transcriptional activator, replication initiation inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D YPC_4049 leuO; LysR-family transcriptional regulator LeuO K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon
D YPC_1849 cysB; LysR family transcriptional regulator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D YPC_1628 putativeLlysR-family transcriptional regulatory protein K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D YPC_0246 putative transcriptional regulator K16516 galR; LysR family transcriptional regulator, regulator for genes of the gallate degradation pathway
D YPC_4323 aaeR; transcriptional regulator, LysR family K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon
D YPC_0319 LysR-family transcriptional regulatory protein K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
D YPC_2864 deoR; DNA-binding transcriptional repressor K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor
D YPC_0054 glpR; DNA-binding transcriptional repressor K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D YPC_0988 DeoR-family regulatory protein K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
D YPC_3644 putative deoR-family regulatory protein K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator
D YPC_0964 ganR; gan regulon transcriptional activator K27069 lacI; LacI family transcriptional regulator, lactose operon repressor
D YPC_4547 xylR; DNA-binding transcriptional repressor PurR K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D YPC_3968 LacI-family regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D YPC_0793 LacI-family regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D YPC_1028 galR; galactose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D YPC_1904 putative LacI-family transcriptional regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D YPC_1627 putative LacI-family transcriptional regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D YPC_2554 Raffinose operon transcriptional regulatoryprotein rafR K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D YPC_0272 cytR; DNA-binding transcriptional dual regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D YPC_4055 fruR; DNA-binding transcriptional dual regulator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D YPC_4306 treR; trehalose operon repressor K03485 treR; LacI family transcriptional regulator, trehalose operon repressor
D YPC_4459 gntR; DNA-binding transcriptional repressor K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D YPC_1580 putative LacI-family transcriptional regulatory protein K06146 idnR; LacI family transcriptional regulator, gluconate utilization system Gnt-II transcriptional activator
D YPC_3795 phnF; putative gntR-family transcriptional regulatory protein K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D YPC_2350 hutC; putative GntR-family transcriptional regulatory protein K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D YPC_2366 GntR-family putative transcriptional regulatory protein K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D YPC_2169 fadR; DNA-binding transcriptional dual regulator of fatty acid metabolism K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D YPC_3756 pdhR; DNA-binding transcriptional dual regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D YPC_2914 uxuR; DNA-binding transcriptional repressor K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor
D YPC_4092 exuR; exu regulon transcriptional regulator K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor
D YPC_1276 putative GntR-family regulatory protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D YPC_1227 betI; TetR-family regulatory protein K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D YPC_3412 acrR; DNA-binding transcriptional repressor K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D YPC_0206 ttk; TetR-family regulatory protein K05501 slmA; TetR/AcrR family transcriptional regulator
D YPC_2007 TetR-family transcriptional regulatory protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D YPC_0302 fabR; DNA-binding transcriptional repressor K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D YPC_1248 Hypothetical transcriptional regulator ybiH K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
D YPC_0002 asnC; DNA-binding transcriptional dual regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D YPC_2801 lrp; transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D YPC_1757 AsnC-family transcriptional regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D YPC_3429 ybaO; putative DNA-binding transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D YPC_1670 ypeR; quorum-sensing transcriptional activator YpeR K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR
D YPC_0810 yspR; quorum-sensing transcriptional regulator K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR
D YPC_0057 malT; maltose regulon positive regulatory protein K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
D YPC_2005 slyA; DNA-binding transcriptional activator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D YPC_3563 mprA; DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB
D YPC_3365 cueR; copper responsive transcription regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D YPC_0175 MerR-family transcriptional regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
D YPC_3230 fur; DNA-binding transcriptional dual regulator of siderophore biosynthesis and transport K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D YPC_0689 zur; transcriptional repressor of Zn transport system K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D YPC_2103 kdgR; DNA-binding transcriptional regulatory protein KdgR K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D YPC_0111 crp; cyclic AMP receptor protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D YPC_1924 fnr; DNA-binding transcriptional dual regulator, global regulator of anaerobic growth K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D YPC_3093 iscR; Iron-sulfur cluster regulator IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D YPC_0620 nsrR; DNA-binding transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D YPC_3664 arsR; arsenical resistance operon repressor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D YPC_2249 yebK; putative DNA-binding transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D YPC_4357 fis; global DNA-binding transcriptional dual regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D YPC_4137 trpR; Trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D YPC_3309 sfsB; putative DNA-binding protein K07724 ner; Ner family transcriptional regulator
D YPC_0581 putative regulator for maltose metabolism K07724 ner; Ner family transcriptional regulator
D YPC_4038 hypothetical protein K11925 sgrR; SgrR family transcriptional regulator
D YPC_4146 nadR; NadR transcriptional repressor / ribosylnicotinamide kinase / NMN adenylyltransferase K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D YPC_0928 hypothetical protein K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA
D YPC_4484 putative regulatory protein K02647 cdaR; carbohydrate diacid regulator
D YPC_1198 modE; DNA-binding transcriptional dual regulator K02019 modE; molybdate transport system regulatory protein
D YPC_4537 hypothetical protein K07726 K07726; putative transcriptional regulator
D YPC_0279 metJ; Met repressor K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D YPC_2412 putA; 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D YPC_3444 bolA; transcriptional regulator BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D YPC_4849 putative DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D YPC_4860 parB; putative partitioning protein B K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D YPC_0470 rfaH; DNA-binding transcriptional antiterminator K05785 rfaH; transcriptional antiterminator RfaH
D YPC_0583 argR; DNA-binding transcriptional regulatory protein K03402 argR; transcriptional regulator of arginine metabolism
D YPC_3241 nagC; DNA-binding transcriptional dual regulator, repressor of N-acetylglucosamine K02565 nagC; N-acetylglucosamine repressor
D YPC_1900 dgsA; DNA-binding transcriptional repressor K15545 mlc; transcriptional regulator of PTS gene
D YPC_4586 mtlR; DNA-binding repressor K02562 mtlR; mannitol operon repressor
D YPC_1975 tyrR; nitrogen regulation protein NRI K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D YPC_1308 gcvR; DNA-binding transcriptional repressor, regulatory protein accessory to GcvA K03567 gcvR; glycine cleavage system transcriptional repressor
D YPC_1984 pspF; DNA-binding transcriptional activator K03974 pspF; psp operon transcriptional activator
D YPC_1981 pspC; DNA-binding transcriptional activator K03973 pspC; phage shock protein C
D YPC_4187 putative regulatory protein K11531 lsrR; lsr operon transcriptional repressor
D YPC_4309 rnk; regulator of nucleoside diphosphate kinase K06140 rnk; regulator of nucleoside diphosphate kinase
D YPC_0932 putative regulatory protein K07733 alpA; prophage regulatory protein
D YPC_1143 DNA-binding protein K07733 alpA; prophage regulatory protein
D YPC_0864 yqgE; hypothetical protein K07735 algH; putative transcriptional regulator
D YPC_3726 dksA; C4-type zinc finger protein, DksA/TraR family K06204 dksA; RNA polymerase-binding transcription factor
D YPC_3470 Ribonucleotide reductase transcriptionalregulator NrdR K07738 nrdR; transcriptional repressor NrdR
D YPC_3513 crl; DNA-binding transcriptional regulator K11926 crl; sigma factor-binding protein Crl
D YPC_4058 mraZ; conserved protein K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:yph03021]
D YPC_0173 rpoA; RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D YPC_0505 rpoB; RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D YPC_0506 rpoC; RNA polymerase, beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D YPC_0199 rpoZ; RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D YPC_3935 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D YPC_3674 rpoS; RNA polymerase sigma factor RpoD K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
D YPC_3139 rpoE; RNA polymerase sigma factor RpoE K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D YPC_0425 rpoH; RNA polymerase sigma factor RpoD K03089 rpoH; RNA polymerase sigma-32 factor
D YPC_4296 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D YPC_2422 fliA; RNA polymerase sigma factor RpoD K02405 fliA; RNA polymerase sigma factor FliA
D YPC_4031 hepA; ATP-dependent helicase HepA K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-]
D YPC_0560 nusA; transcription termination/antitermination L factor K02600 nusA; transcription termination/antitermination protein NusA
D YPC_3467 nusB; transcription antitermination protein K03625 nusB; transcription antitermination protein NusB
D YPC_0500 nusG; transcription termination factor K02601 nusG; transcription termination/antitermination protein NusG
D YPC_4274 sspA; stringent starvation protein A K03599 sspA; stringent starvation protein A
D YPC_4273 sspB; ClpXP protease specificity-enhancing factor K03600 sspB; stringent starvation protein B
D YPC_3136 rseC; RseC protein involved in reduction of the SoxR iron-sulfur cluster K03803 rseC; sigma-E factor negative regulatory protein RseC
D YPC_3726 dksA; C4-type zinc finger protein, DksA/TraR family K06204 dksA; RNA polymerase-binding transcription factor
D YPC_0571 greA; transcription elongation factor K03624 greA; transcription elongation factor GreA
D YPC_0071 greB; transcription elongation factor K04760 greB; transcription elongation factor GreB
D YPC_0355 rho; transcription termination factor K03628 rho; transcription termination factor Rho
D YPC_1103 rof; modulator of Rho-dependent transcription termination K19000 rof; Rho-binding antiterminator
C 03019 Messenger RNA biogenesis [BR:yph03019]
D YPC_1688 rne; RNase E K08300 rne; ribonuclease E [EC:3.1.26.12]
D YPC_4338 rng; RNase G K08301 rng; ribonuclease G [EC:3.1.26.-]
D YPC_3132 rnc; RNase III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D YPC_0619 rnr; exoribonuclease R, RNase R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D YPC_0636 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D YPC_0353 rhlB; ATP-dependent RNA helicase K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D YPC_3045 putative ATP-dependent RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D YPC_1249 putative ATP-dependent RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D YPC_3830 deaD; ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D YPC_0400 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D YPC_3700 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D YPC_3832 pnp; polynucleotide phosphorylase/polyadenylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D YPC_0355 rho; transcription termination factor K03628 rho; transcription termination factor Rho
D YPC_0240 pfkA; 6-phosphofructokinase I K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D YPC_4118 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D YPC_0650 groL; Heat shock protein 60 family chaperone GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D YPC_0626 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D YPC_1285 ppk; polyphosphate kinase, component of RNA degradosome K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D YPC_3728 Poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D YPC_1040 nudH; nucleotide hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D YPC_3619 csrA; post transcriptional regulatory RNA-binding protein K03563 csrA; carbon storage regulator
D YPC_4343 yhdA; putative exported protein K18765 csrD; RNase E specificity factor CsrD
D YPC_0267 Ribonuclease E inhibitor RraA K02553 rraA; regulator of ribonuclease activity A
D YPC_3782 rraB; ribonuclease E inhibitor protein K09893 rraB; regulator of ribonuclease activity B
D YPC_4300 yhbJ; putative protein with nucleoside triphosphate hydrolase domain K06958 rapZ; RNase adapter protein RapZ
D YPC_1951 hrpA; ATP-dependent helicase K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
D YPC_3723 hrpB; putative ATP-dependent helicase K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6]
D YPC_3368 sroB; small RNA K18503 chiX; small regulatory RNA ChiX
D YPC_4266 ryhA; small RNA K18504 arcZ; small regulatory RNA ArcZ
D YPC_3115 glmY; glmS activator sRNA K15841 glmY; small regulatory RNA GlmY
D YPC_4461 ryhB; regulatory antisense RNA K18507 ryhB; small regulatory RNA RyhB
D YPC_2860 rybB; small RNA K18508 rybB; small regulatory RNA RybB
D YPC_3611 micA; MicA regulatory antisense RNA K18511 micA; small regulatory RNA MicA
D YPC_4231 csrC; CsrC carbon storage regulatory RNA K18516 csrC; small regulatory RNA CsrC
D YPC_2042 rprA; RprA regulatory RNA K18518 rprA; small regulatory RNA RprA
D YPC_1266 ryeE; small RNA K18520 cyaR; small regulatory RNA CyaR
D YPC_1062 gcvB; GcvB regulatory RNA K18521 gcvB; small regulatory RNA GcvB
D YPC_1030 omrB; OmrB OmpR-regulated sRNA K18522 omrA; small regulatory RNA OmrA
C 03041 Spliceosome
C 03011 Ribosome [BR:yph03011]
D YPC_2779 rpsA; 30S ribosomal subunit protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D YPC_1083 rpsB; 30S ribosomal subunit protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D YPC_0154 rpsC; 30S ribosomal subunit protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D YPC_0172 rpsD; 30S ribosomal subunit protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D YPC_0165 rpsE; 30S ribosomal subunit protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D YPC_0608 rpsF; 30S ribosomal subunit protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D YPC_0139 rpsG; 30S ribosomal subunit protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D YPC_0162 rpsH; 30S ribosomal subunit protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D YPC_4275 rpsI; 30S ribosomal subunit protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D YPC_0147 rpsJ; 30S ribosomal subunit protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D YPC_0171 rpsK; 30S ribosomal subunit protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D YPC_0138 rpsL; 30S ribosomal subunit protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D YPC_0170 rpsM; 30S ribosomal subunit protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D YPC_0161 rpsN; 30S ribosomal subunit protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D YPC_0556 rpsO; 30S ribosomal subunit protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D YPC_3603 rpsP; 30S ribosomal subunit protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D YPC_0157 rpsQ; 30S ribosomal subunit protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D YPC_0606 rpsR; 30S ribosomal subunit protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D YPC_0152 rpsS; 30S ribosomal subunit protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D YPC_4114 rpsT; 30S ribosomal subunit protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D YPC_3933 rpsU; 30S ribosomal subunit protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D YPC_0502 rplA; 50S ribosomal subunit protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D YPC_0151 rplB; 50S ribosomal protein l2 K02886 RP-L2; large subunit ribosomal protein L2
D YPC_0148 rplC; 50S ribosomal subunit protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D YPC_0149 rplD; 50S ribosomal subunit protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D YPC_0160 rplE; 50S ribosomal subunit protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D YPC_0163 rplF; 50S ribosomal subunit protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D YPC_0605 rplI; 50S ribosomal subunit protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D YPC_0503 rplJ; 50S ribosomal subunit protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D YPC_0501 rplK; 50S ribosomal subunit protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D YPC_0504 rplL; 50S ribosomal subunit protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D YPC_4276 rplM; 50S ribosomal subunit protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D YPC_0158 rplN; 50S ribosomal subunit protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D YPC_0167 rplO; 50S ribosomal subunit protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D YPC_0155 rplP; 50S ribosomal subunit protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D YPC_0174 rplQ; 50S ribosomal subunit protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D YPC_0164 rplR; 50S ribosomal subunit protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D YPC_3600 rplS; 50S ribosomal subunit protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D YPC_2067 rplT; 50S ribosomal subunit protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D YPC_0578 rplU; 50S ribosomal subunit protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D YPC_0153 rplV; 50S ribosomal subunit protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D YPC_0150 rplW; 50S ribosomal subunit protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D YPC_0159 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D YPC_0577 rpmA; 50S ribosomal subunit protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D YPC_0210 rpmB; 50S ribosomal subunit protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D YPC_0156 rpmC; 50S ribosomal subunit protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D YPC_0166 rpmD; 50S ribosomal subunit protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D YPC_3415 putative ribosomal protein K02909 RP-L31; large subunit ribosomal protein L31
D YPC_0275 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D YPC_1692 rpmF; 50S ribosomal subunit protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D YPC_0211 rpmG; 50S ribosomal subunit protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D YPC_4620 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D YPC_2068 rpmI; 50S ribosomal subunit protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D YPC_3416 putative ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D YPC_0169 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D YPC_2935 rplY; 50S ribosomal subunit protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D YPC_0311 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPC_1119 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPC_3573 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPC_4245 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPC_0486 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPC_0531 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPC_0016 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPC_0018 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPC_0013 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPC_0527 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPC_1116 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPC_4248 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPC_0308 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPC_3577 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPC_0482 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPC_0015 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPC_4246 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPC_3574 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPC_1118 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPC_0530 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPC_0485 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPC_0310 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:yph03009]
D YPC_3132 rnc; RNase III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D YPC_2547 hypothetical protein K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D YPC_0636 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D YPC_3131 era; membrane-associated, 16S rRNA-binding GTPase K03595 era; GTPase
D YPC_0575 obgE; GTPase involved in cell partioning and DNA repair K03979 obgE; GTPase [EC:3.6.5.-]
D YPC_3726 dksA; C4-type zinc finger protein, DksA/TraR family K06204 dksA; RNA polymerase-binding transcription factor
D YPC_0560 nusA; transcription termination/antitermination L factor K02600 nusA; transcription termination/antitermination protein NusA
D YPC_3467 nusB; transcription antitermination protein K03625 nusB; transcription antitermination protein NusB
D YPC_0500 nusG; transcription termination factor K02601 nusG; transcription termination/antitermination protein NusG
D YPC_2933 Ribosomal small subunit pseudouridine synthaseA K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D YPC_4004 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D YPC_0179 16S rRNA methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D YPC_0420 Ribosomal RNA small subunit methyltransferaseD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D YPC_0866 yggJ; hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D YPC_4655 gidB; methyltransferase, SAM-dependent methyltransferase, glucose-inhibited cell-division protein K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D YPC_4059 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D YPC_4258 yraL; putative methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D YPC_4479 yhiQ; putative SAM-dependent methyltransferase K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
D YPC_2533 rrmA; protein-L-isoaspartate O-methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D YPC_0617 rlmB; tRNA guanosine-2'-O-methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D YPC_0568 rrmJ; 23S rRNA methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D YPC_1603 putative ribosomal RNA small subunitmethyltransferase J K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181]
D YPC_3992 ygjO; putative methyltransferase small domain K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174]
D YPC_3270 ybeA; conserved protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D YPC_2714 putative tRNA methylase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D YPC_4482 yhiR; hypothetical protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D YPC_2744 rlmL; putative methyltransferase K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D YPC_1065 ygdE; putative SAM-dependent methyltransferase K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D YPC_3072 yfgB; putative enzyme K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D YPC_2850 rumB; tRNA uracil-5--methyltransferase K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189]
D YPC_4009 rluA; Ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D YPC_1841 rluB; 23S rRNA pseudouridylate synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D YPC_1689 rluC; Ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D YPC_3581 rluD; 23S rRNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D YPC_1742 rluE; 23S rRNA pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D YPC_3566 yfiF; putative methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
D YPC_4166 rimI; acetylase for 30S ribosomal subunit protein S18 K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D YPC_2278 rimJ; ribosomal-protein-S5-alanine N-acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
D YPC_3602 rimM; 16S rRNA processing protein K02860 rimM; 16S rRNA processing protein RimM
D YPC_2786 ycaO; conserved protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
D YPC_4354 prmA; methylase for 50S ribosomal subunit protein L11 K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D YPC_1501 prmB; ribosomal protein L3 N5-glutamine methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
D YPC_1734 hypothetical protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
D YPC_1688 rne; RNase E K08300 rne; ribonuclease E [EC:3.1.26.12]
D YPC_4338 rng; RNase G K08301 rng; ribonuclease G [EC:3.1.26.-]
D YPC_0863 yqgF; putative Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D YPC_2505 dbpA; ATP-dependent RNA helicase K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
D YPC_3830 deaD; ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D YPC_3142 srmB; ATP-dependent RNA helicase K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7]
D YPC_0637 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D YPC_3064 der; ferrous iron transport protein B K03977 engA; GTPase
D YPC_0625 hflX; putative GTPase K03665 hflX; GTPase
D YPC_0185 Sua5 YciO YrdC YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D YPC_0198 spoT; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D YPC_0558 rbfA; 30s ribosome binding factor K02834 rbfA; ribosome-binding factor A
D YPC_0561 yhbC; conserved protein K09748 rimP; ribosome maturation factor RimP
D YPC_3349 ybcJ; putative RNA-binding protein K14761 rlbA; ribosome-associated protein
D YPC_3269 ybeB; hypothetical protein K09710 ybeB; ribosome-associated protein
D YPC_3255 ybeY; conserved protein K07042 ybeY; probable rRNA maturation factor
D YPC_0569 yhbY; putative RNA-binding protein K07574 yhbY; RNA-binding protein
D YPC_4584 hypothetical protein K14762 yibL; ribosome-associated protein
D YPC_4314 yjgA; conserved protein K09889 yjgA; ribosome-associated protein
D YPC_2738 rmf; putative ribosome modulation factor K03812 rmf; ribosome modulation factor
D YPC_4298 Ribosome hibernation protein YhbH K05808 hpf; ribosome hibernation promoting factor
D YPC_3583 raiA; Protein Y, associated with 30S ribosomal subunit K05809 raiA; ribosome-associated inhibitor A
D YPC_2311 ychF; putative GTP-binding protein K06942 ychF; ribosome-binding ATPase
D YPC_1691 yceD; conserved protein K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:yph03016]
D YPC_3927 cca; Methenyltetrahydrofolate cyclohydrolase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D YPC_1405 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D YPC_1108 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D YPC_4112 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D YPC_3265 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D YPC_2630 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D YPC_3235 glnS; glutamyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D YPC_2272 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D YPC_0920 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D YPC_2262 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D YPC_3620 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D YPC_2753 asnS; asparaginyl tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D YPC_2070 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D YPC_2796 Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D YPC_3352 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D YPC_3780 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D YPC_3067 hisS; histidyl tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D YPC_2064 pheS; phenylalanine tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D YPC_2063 pheT; phenylalanine tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D YPC_1999 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D YPC_0093 trpS; tryptophan-tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D YPC_4222 dtd; D-Tyr-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D YPC_1711 hinT; purine nucleoside phosphoramidase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D YPC_0848 trmI; tRNA guanine-N7--methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D YPC_1109 yaeB; conserved protein K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
D YPC_1519 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D YPC_0557 truB; tRNA U55 pseudouridine synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D YPC_3678 truD; tRNA(Glu) U13 pseudouridine synthase K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D YPC_3092 iscS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YPC_2174 putative aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YPC_0185 Sua5 YciO YrdC YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D YPC_0627 miaA; delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D YPC_4624 mnmE; 5-methylaminomethyl-2-thiouridine-synthesizing GTPase K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D YPC_4657 gidA; glucose-inhibited cell-division protein K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D YPC_2148 selD; selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D YPC_0597 cysQ; inositol monophosphatase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D YPC_4621 rnpA; protein C5 component of RNase P K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D YPC_2012 rnt; ribonuclease T K03683 rnt; ribonuclease T [EC:3.1.13.-]
D YPC_0204 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D YPC_1865 rnb; ribonuclease II K01147 rnb; exoribonuclease II [EC:3.1.13.1]
D YPC_2237 rnd; ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D YPC_3724 ligT; 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D YPC_4144 ABC transporter ATP-binding protein yjjK K06020 ettA; energy-dependent translational throttle protein EttA
D YPC_4593 glyQ; glycine tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D YPC_4592 glyS; glycine tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D YPC_3727 glutamyl-Q-tRNA synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D YPC_3369 ybaK; bifunctional cys-tRNA Pro deacetylase/cys-tRNA Cys deacylase K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D YPC_3121 tadA; tRNA-specific adenosine-34 deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D YPC_0688 dusA; tRNA-dihydrouridine synthase A K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D YPC_4356 dusB; tRNA-dihydrouridine synthase B K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D YPC_3041 dusC; tRNA-dihydrouridine synthase C K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-]
D YPC_3253 miaB; isopentenyl-adenosine A37 tRNA methylthiolase K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D YPC_2766 smtA; putative S-adenosyl-L-methionine-dependent methyltransferase K06219 smtA; tRNA 5-carboxymethoxyuridine methyltransferase [EC:2.1.1.-]
D YPC_0304 trmA; tRNA uracil-5--methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
D YPC_3601 trmD; tRNA guanine-N1--methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D YPC_3566 yfiF; putative methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
D YPC_0197 spoU; tRNA guanosine-2'-O-methyltransferase K00556 trmH; tRNA (guanosine-2'-O-)-methyltransferase [EC:2.1.1.34]
D YPC_3094 trmJ; tRNA Cm32/Um32 methyltransferase K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
D YPC_0231 yibK; putative rRNA methylase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D YPC_3141 yfiC; putative S-adenosyl-L-methionine-dependent methyltransferase K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223]
D YPC_1073 truC; tRNA U65 pseudouridine synthase K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26]
D YPC_4009 rluA; Ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D YPC_1740 mnmA; tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D YPC_1964 ttcA; putative magnesium chelatase family protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D YPC_0413 sirA; sulfur transfer protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D YPC_0137 yheL; sulfur transfer complex subunit TusB K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D YPC_0136 yheM; sulfur relay protein TusC K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D YPC_0135 yheN; tRNA 2-thiouridine synthesizing protein, subunit of sulfur transfer complex, TusD K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D YPC_2712 yccK; sulfur transfer protein K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D YPC_3090 iscA; FeS cluster assembly protein K13628 iscA; iron-sulfur cluster assembly protein
D YPC_0909 ygfZ; putative folate-dependent regulatory protein K06980 ygfZ; tRNA-modifying protein YgfZ
D YPC_1508 mnmC; 5-methylaminomethyl-2-thiouridine-formingenzyme mnmC K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
D YPC_3479 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D YPC_3433 queC; enzyme in preQ0 biosynthesis K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D YPC_3695 ygcM; putative 6-pyruvoyl tetrahydrobiopterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D YPC_3696 ygcF; conserved protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D YPC_1068 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D YPC_0632 yjeS; putative Fe-S electron transport protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D YPC_3478 tgt; tRNA-guanine transglycosylase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D YPC_3458 thiI; sulfur transfer protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D YPC_1101 tilS; tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D YPC_1316 ypfI; putative hydrolase K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193]
D YPC_2241 yeaZ; putative peptidase K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D YPC_3931 ygjD; putative peptidase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D YPC_0630 yjeE; ATPase with strong ADP affinity K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D YPC_1058 ygdL; conserved protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D YPC_0619 rnr; exoribonuclease R, RNase R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D YPC_3832 pnp; polynucleotide phosphorylase/polyadenylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:yph03012]
D YPC_1858 yciH; translation initiation factor K03113 EIF1; translation initiation factor 1
D YPC_0559 infB; protein chain initiation factor 2, IF2 K02519 infB; translation initiation factor IF-2
D YPC_2069 Translation initiation factor 3 K02520 infC; translation initiation factor IF-3
D YPC_1084 tsf; elongation factor Ts K02357 tsf; elongation factor Ts
D YPC_0141 tufA; Translation elongation factor Tu K02358 tuf; elongation factor Tu
D YPC_0498 Translation elongation factor Tu K02358 tuf; elongation factor Tu
D YPC_0140 fusA; GTP-binding protein LepA K02355 fusA; elongation factor G
D YPC_2302 prfA; peptide chain release factor RF-1 K02835 prfA; peptide chain release factor 1
D YPC_1086 frr; ribosome recycling factor K02838 frr; ribosome recycling factor
D YPC_2301 prmC; release factors RF-1 and RF-2 N5-glutamine methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D YPC_2310 pth; peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D YPC_2809 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D YPC_2910 yeiP; Translation elongation factor P-relatedprotein K02356 efp; elongation factor P
D YPC_0647 efp; Elongation factor EF-P K02356 efp; elongation factor P
D YPC_0640 poxA; putative lysyl-tRNA synthetase K04568 epmA; elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-]
D YPC_0648 yjeK; lysine 2,3-aminomutase K19810 epmB; L-lysine 2,3-aminomutase [EC:5.4.3.-]
D YPC_1506 putative transporting ATPase K09906 epmC; elongation factor P hydroxylase [EC:1.14.-.-]
D YPC_0919 prfB; Peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
D YPC_4165 prfC; peptide chain release factor RF-3 K02837 prfC; peptide chain release factor 3
D YPC_0176 hypothetical protein K09890 arfA; alternative ribosome-rescue factor
D YPC_1106 peptide chain release factor 1 K15034 yaeJ; ribosome-associated protein
C 03110 Chaperones and folding catalysts [BR:yph03110]
D YPC_3579 clpB; Clp ATPase K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D YPC_3440 clpX; ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D YPC_0269 hslU; molecular chaperone and ATPase component of HslUV protease K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D YPC_3399 htpG; molecular chaperone HSP90 family K04079 HSP90A; molecular chaperone HtpG
D YPC_4118 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D YPC_3088 hscA; chaperone protein HscA K04044 hscA; molecular chaperone HscA
D YPC_1281 yegD; putative chaperone K04046 yegD; hypothetical chaperone protein
D YPC_0650 groL; Heat shock protein 60 family chaperone GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D YPC_4117 dnaJ; chaperone Hsp40, co-chaperone with DnaK K03686 dnaJ; molecular chaperone DnaJ
D YPC_4008 djlA; DnaJ-like membrane chaperone protein K05801 djlA; DnaJ like chaperone protein
D YPC_3089 hscB; chaperone protein DnaJ K04082 hscB; molecular chaperone HscB
D YPC_0075 hslO; heat shock protein Hsp33 K04083 hslO; molecular chaperone Hsp33
D YPC_1160 grpE; heat shock protein K03687 GRPE; molecular chaperone GrpE
D YPC_4606 ibpA; heat shock chaperone K04080 ibpA; molecular chaperone IbpA
D YPC_4605 ibpB; heat shock chaperone K04081 ibpB; molecular chaperone IbpB
D YPC_0076 hslR; ribosome-associated heat shock protein Hsp15 K04762 hslR; ribosome-associated heat shock protein Hsp15
D YPC_0651 groS; Cpn10 chaperonin GroES, small subunit of GroESL K04078 groES; chaperonin GroES
D YPC_3708 htrA; periplasmic serine protease Do K04771 degP; serine protease Do [EC:3.4.21.107]
D YPC_0567 ftsH; subunit of integral membrane ATP-dependent zinc metallopeptidase K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D YPC_4653 atpB; F0 sector of membrane-bound ATP synthase, subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D YPC_0343 putative fimbrial chaperone K07346 fimC; fimbrial chaperone protein
D YPC_2106 putative chaperone protein K07346 fimC; fimbrial chaperone protein
D YPC_2122 putative chaperone protein K07346 fimC; fimbrial chaperone protein
D YPC_0227 secB; protein export chaperone K03071 secB; preprotein translocase subunit SecB
D YPC_0235 cpxP; P pilus assembly/Cpx signaling pathway,periplasmic inhibitor/zinc-resistance associatedprotein K06006 cpxP; periplasmic protein CpxP/Spy
D YPC_1236 Zinc resistance-associated protein K07803 zraP; zinc resistance-associated protein
D YPC_3185 putative exported protein K19778 hdeB; acid stress chaperone HdeB
D YPC_3639 dmsD; twin-argninine leader-binding protein for DmsA and TorA K23349 dmsD; putative dimethyl sulfoxide reductase chaperone
D YPC_1428 putative oxidoreductase component K23349 dmsD; putative dimethyl sulfoxide reductase chaperone
D YPC_0105 ppiA; peptidyl-prolyl cis-trans isomerase A rotamase A K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D YPC_3353 ppiB; peptidyl-prolyl cis-trans isomerase A rotamase A K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D YPC_3437 ppiD; peptidyl-prolyl cis-trans isomerase D K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D YPC_0133 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D YPC_0600 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8]
D YPC_0130 slyD; trigger factor K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D YPC_0347 ppiC; peptidyl-prolyl cis-trans isomerase SurA K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D YPC_4006 surA; peptidyl-prolyl cis-trans isomerase C K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D YPC_0354 trxA; thioredoxin 1 K03671 TXN; thioredoxin
D YPC_3567 trxC; thioredoxin 2 K03672 trxC; thioredoxin 2 [EC:1.8.1.8]
D YPC_3361 ybbN; putative thioredoxin domain-containing protein K05838 ybbN; putative thioredoxin
D YPC_2858 grxA; glutaredoxin 3 K03674 grxA; glutaredoxin 1
D YPC_0226 grxC; glutaredoxin K03676 grxC; glutaredoxin 3
D YPC_2014 grxD; monothiol glutaredoxin K07390 grxD; monothiol glutaredoxin
D YPC_4239 dsbA; periplasmic protein disulfide isomerase I K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D YPC_2171 dsbB; oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9]
D YPC_0917 dsbC; protein disulfide isomerase II K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D YPC_0657 dipZ; thiol:disulfide interchange protein K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16]
D YPC_1491 Cytochrome c-type biogenesis protein CcmG/DsbE,thiol:disulfide oxidoreductase K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
C 04131 Membrane trafficking [BR:yph04131]
D YPC_3073 ndk; multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'-phosphodiesterase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D YPC_2157 gapA; glyceraldehyde-3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D YPC_1188 gpmA; phosphoglyceromutase 1 K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D YPC_2025 pykF; pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40]
D YPC_2250 pykA; pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40]
D YPC_3399 htpG; molecular chaperone HSP90 family K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system [BR:yph04121]
C 03051 Proteasome [BR:yph03051]
D YPC_3399 htpG; molecular chaperone HSP90 family K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:yph03032]
D YPC_1127 rnhA; ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D YPC_0522 hupA; HU, DNA-binding transcriptional regulator, alpha subunit K05787 hupA; DNA-binding protein HU-alpha
D YPC_3438 hupB; HU, DNA-binding transcriptional regulator, beta subunit K03530 hupB; DNA-binding protein HU-beta
D YPC_2062 ihfA; integration host factor (IHF), DNA-binding protein, alpha subunit K04764 ihfA; integration host factor subunit alpha
D YPC_2778 ihfB; integration host factor (IHF), DNA-binding protein, beta subunit K05788 ihfB; integration host factor subunit beta
D YPC_4618 dnaA; chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator K02313 dnaA; chromosomal replication initiator protein
D YPC_0684 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D YPC_3934 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D YPC_0679 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D YPC_4831 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D YPC_1098 dnaE; DNA polymerase III, alpha chain K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D YPC_4617 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D YPC_3779 holC; DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D YPC_3267 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D YPC_1705 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D YPC_1128 dnaQ; DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D YPC_3403 dnaX; Holliday junction DNA helicase RuvB K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D YPC_4167 holD; DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D YPC_2497 holE; DNA polymerase III, theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D YPC_1097 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D YPC_4238 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D YPC_0201 ligB; putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D YPC_1396 ligA; DNA ligase, NAD(+)-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D YPC_1897 tus; inhibitor of replication at Ter, DNA-binding protein K10748 tus; DNA replication terminus site-binding protein
D YPC_0090 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D YPC_2223 putative methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D YPC_3173 seqA; regulatory protein for replication initiation K03645 seqA; negative modulator of initiation of replication
D YPC_1299 hda; ATPase regulatory factor involved in DnaA inactivation K10763 hda; DnaA-homolog protein
D YPC_2993 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D YPC_4615 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D YPC_3903 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D YPC_3906 parE; topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D YPC_1848 topA; DNA topoisomerase I, omega subunit K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D YPC_2147 topB; DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:yph03036]
D YPC_3132 rnc; RNase III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D YPC_2133 hns; global DNA-binding transcriptional dual regulator H-NS K03746 hns; DNA-binding protein H-NS
D YPC_0522 hupA; HU, DNA-binding transcriptional regulator, alpha subunit K05787 hupA; DNA-binding protein HU-alpha
D YPC_3438 hupB; HU, DNA-binding transcriptional regulator, beta subunit K03530 hupB; DNA-binding protein HU-beta
D YPC_2062 ihfA; integration host factor (IHF), DNA-binding protein, alpha subunit K04764 ihfA; integration host factor subunit alpha
D YPC_2778 ihfB; integration host factor (IHF), DNA-binding protein, beta subunit K05788 ihfB; integration host factor subunit beta
D YPC_4134 rob; DNA-binding transcriptional activator K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D YPC_4618 dnaA; chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator K02313 dnaA; chromosomal replication initiator protein
D YPC_4261 diaA; DnaA initiator-associating factor K12961 diaA; DnaA initiator-associating protein
D YPC_2715 hspQ; DNA-binding protein, hemimethylated K11940 hspQ; heat shock protein HspQ
D YPC_1613 dps; Fe-binding and storage protein K04047 dps; starvation-inducible DNA-binding protein
D YPC_4357 fis; global DNA-binding transcriptional dual regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D YPC_0626 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D YPC_0887 argP; DNA-binding transcriptional activator, replication initiation inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D YPC_2801 lrp; transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D YPC_1757 AsnC-family transcriptional regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D YPC_2938 yejK; nucleotide associated protein K06899 ndpA; nucleoid-associated protein
D YPC_2763 mukB; putative bifunctional chromosome partitioning protein and nucleotide hydrolase K03632 mukB; chromosome partition protein MukB
D YPC_2764 mukE; Chromosome partition protein mukE K03804 mukE; chromosome partition protein MukE
D YPC_2765 mukF; Involved in chromosome partioning, Ca2+ binding protein K03633 mukF; chromosome partition protein MukF
D YPC_4071 ftsA; cell division protein K03590 ftsA; cell division protein FtsA
D YPC_3681 ftsB; cell division protein K05589 ftsB; cell division protein FtsB
D YPC_0422 ftsE; putative transporter subunit: ATP-binding component of ABC superfamily K09812 ftsE; cell division transport system ATP-binding protein
D YPC_4061 ftsI; penicillin-binding protein 3 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D YPC_2799 ftsK; DNA-binding membrane protein required for chromosome resolution and partitioning K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D YPC_4060 ftsL; cell division protein FtsL K03586 ftsL; cell division protein FtsL
D YPC_0271 ftsN; essential cell division protein K03591 ftsN; cell division protein FtsN
D YPC_4070 ftsQ; membrane anchored protein involved in growth of wall at septum K03589 ftsQ; cell division protein FtsQ
D YPC_4066 ftsW; cell division membrane protein K03588 ftsW; cell division protein FtsW
D YPC_0423 ftsX; putative transporter subunit: membrane component of ABC superfamily K09811 ftsX; cell division transport system permease protein
D YPC_4072 ftsZ; GTP-binding tubulin-like cell division protein K03531 ftsZ; cell division protein FtsZ
D YPC_1395 zipA; cell division protein involved in Z ring assembly K03528 zipA; cell division protein ZipA
D YPC_0893 zapA; protein that localizes to the cytokinetic ring K09888 zapA; cell division protein ZapA
D YPC_0256 yiiU; conserved protein K09892 zapB; cell division protein ZapB
D YPC_2746 ycbW; hypothetical protein K18657 zapC; cell division protein ZapC
D YPC_3767 yacF; conserved protein K18778 zapD; cell division protein ZapD
D YPC_4277 yhcM; conserved protein with nucleoside triphosphate hydrolase domain K06916 zapE; cell division protein ZapE
D YPC_0601 ytfB; putative cell envelope opacity-associated protein K07269 ytfB; cell division protein YtfB
D YPC_0629 amiB; N-acetylmuramoyl-l-alanine amidase II K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D YPC_1054 amiC; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D YPC_3413 acrA; multidrug efflux protein K03585 acrA; membrane fusion protein, multidrug efflux system
D YPC_2234 minC; cell division inhibitor K03610 minC; septum site-determining protein MinC
D YPC_2235 minD; septum site-determining protein K03609 minD; septum site-determining protein MinD
D YPC_2236 minE; cell division topological specificity factor K03608 minE; cell division topological specificity factor
D YPC_2725 sulA; SOS cell division inhibitor K13053 sulA; cell division inhibitor SulA
D YPC_0206 ttk; TetR-family regulatory protein K05501 slmA; TetR/AcrR family transcriptional regulator
D YPC_3173 seqA; regulatory protein for replication initiation K03645 seqA; negative modulator of initiation of replication
D YPC_4342 mreB; cell wall structural complex MreBCD, actin-like component MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D YPC_4341 mreC; cell wall structural complex MreBCD transmembrane component MreC K03570 mreC; rod shape-determining protein MreC
D YPC_4340 mreD; cell wall structural complex MreBCD transmembrane component MreD K03571 mreD; rod shape-determining protein MreD
D YPC_3272 mrdB; cell wall shape-determining protein K05837 rodA; rod shape determining protein RodA
D YPC_4861 parA; putative partitioning protein A K03496 parA; chromosome partitioning protein
D YPC_4849 putative DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D YPC_4860 parB; putative partitioning protein B K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D YPC_3903 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D YPC_3906 parE; topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D YPC_4657 gidA; glucose-inhibited cell-division protein K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D YPC_4655 gidB; methyltransferase, SAM-dependent methyltransferase, glucose-inhibited cell-division protein K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D YPC_0388 xerC; site-specific tyrosine recombinase K03733 xerC; integrase/recombinase XerC
D YPC_0916 xerD; site-specific tyrosine recombinase K04763 xerD; integrase/recombinase XerD
D YPC_2629 mrp; antiporter inner membrane protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D YPC_3946 hypothetical protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D YPC_4232 yihA; GTP-binding protein K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:yph03400]
D YPC_1923 ogt; O-6-alkylguanine-DNA:cysteine-protein methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D YPC_3160 phr; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D YPC_0847 mutY; adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D YPC_1868 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D YPC_4078 mutT; nucleoside triphosphate pyrophosphohydrolase, marked preference for dGTP K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D YPC_0207 dut; deoxyuridinetriphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D YPC_0232 ada; bifunctional regulatory protein/DNA repair protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D YPC_2432 putative glycosidase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D YPC_4594 tag; 3-methyl-adenine DNA glycosylase I, constitutive K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D YPC_0212 mutM; formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D YPC_2143 xthA; exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D YPC_2886 nfo; endonuclease IV with intrinsic 3'-5' exonuclease activity K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D YPC_0519 nfi; endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
D YPC_0918 recJ; ssDNA exonuclease, 5' --> 3'-specific K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D YPC_0201 ligB; putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D YPC_1396 ligA; DNA ligase, NAD(+)-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D YPC_4238 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D YPC_0680 uvrA; ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC K03701 uvrA; excinuclease ABC subunit A
D YPC_1212 uvrB; excinulease of nucleotide excision repair, DNA damage recognition component K03702 uvrB; excinuclease ABC subunit B
D YPC_2396 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D YPC_0390 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D YPC_0505 rpoB; RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D YPC_0506 rpoC; RNA polymerase, beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D YPC_0173 rpoA; RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D YPC_0199 rpoZ; RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D YPC_1724 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D YPC_3673 mutS; methyl-directed mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS
D YPC_0628 mutL; methyl-directed mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D YPC_1039 mutH; methyl-directed mismatch repair protein K03573 mutH; DNA mismatch repair protein MutH
D YPC_2591 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D YPC_3059 xseA; exonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D YPC_3460 xseB; exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D YPC_4831 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D YPC_1098 dnaE; DNA polymerase III, alpha chain K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D YPC_4617 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D YPC_3779 holC; DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D YPC_3267 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D YPC_1705 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D YPC_1128 dnaQ; DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D YPC_3403 dnaX; Holliday junction DNA helicase RuvB K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D YPC_4167 holD; DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D YPC_2497 holE; DNA polymerase III, theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D YPC_0679 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D YPC_0090 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D YPC_2223 putative methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D YPC_1049 recC; exonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D YPC_3622 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA
D YPC_2258 ruvA; component of RuvABC resolvasome, regulatory subunit K03550 ruvA; holliday junction DNA helicase RuvA
D YPC_2257 ruvB; ATP-dependent DNA helicase, component of RuvABC resolvasome K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D YPC_2259 ruvC; component of RuvABC resolvasome, endonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D YPC_0273 priA; transcription-repair coupling factor K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D YPC_0607 priB; primosomal protein N K02686 priB; primosomal replication protein N
D YPC_3408 priC; primosomal replication protein n'' K04067 priC; primosomal replication protein N''
D YPC_3494 Exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50
D YPC_3493 sbcD; exonuclease, dsDNA, ATP-dependent K03547 sbcD; DNA repair protein SbcD/Mre11
D YPC_4147 radA; putative repair protein K04485 radA; DNA repair protein RadA/Sms
D YPC_4616 recF; gap repair protein K03629 recF; DNA replication and repair protein RecF
D YPC_0196 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D YPC_3130 recO; gap repair protein K03584 recO; DNA repair protein RecO (recombination protein O)
D YPC_3401 recR; gap repair protein K06187 recR; recombination protein RecR
D YPC_1158 recN; recombination and repair protein K03631 recN; DNA repair protein RecN (Recombination protein N)
D YPC_3498 DNA recombination-dependent growth factor C K03554 rdgC; recombination associated protein RdgC
D YPC_1659 hypothetical protein K15342 cas1; CRISP-associated protein Cas1
D YPC_2934 yejH; putative ATP-dependent helicase K19789 radD; DNA repair protein RadD
D YPC_0106 putative ATPase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
D YPC_2993 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D YPC_4615 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D YPC_1848 topA; DNA topoisomerase I, omega subunit K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D YPC_0522 hupA; HU, DNA-binding transcriptional regulator, alpha subunit K05787 hupA; DNA-binding protein HU-alpha
D YPC_3438 hupB; HU, DNA-binding transcriptional regulator, beta subunit K03530 hupB; DNA-binding protein HU-beta
D YPC_4357 fis; global DNA-binding transcriptional dual regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D YPC_2062 ihfA; integration host factor (IHF), DNA-binding protein, alpha subunit K04764 ihfA; integration host factor subunit alpha
D YPC_2778 ihfB; integration host factor (IHF), DNA-binding protein, beta subunit K05788 ihfB; integration host factor subunit beta
D YPC_0400 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D YPC_2133 hns; global DNA-binding transcriptional dual regulator H-NS K03746 hns; DNA-binding protein H-NS
D YPC_3524 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D YPC_0690 lexA; DNA-binding transcriptional repressor of SOS regulon K01356 lexA; repressor LexA [EC:3.4.21.88]
D YPC_4032 polB; DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7]
D YPC_1684 dinI; DNA damage-inducible protein I K12149 dinI; DNA-damage-inducible protein I
D YPC_3621 recX; inhibitor of RecA K03565 recX; regulatory protein
D YPC_0349 rep; ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D YPC_2721 helD; DNA helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4]
D YPC_3005 dinG; ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D YPC_2243 yoaA; conserved protein with nucleoside triphosphate hydrolase domain K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D YPC_3210 nrdE; ribonucleoside-diphosphate reductase 2, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D YPC_2995 nrdA; ribonucleoside-diphosphate reductase 1 alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D YPC_2996 nrdB; ribonucleoside-diphosphate reductase 1 beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D YPC_3211 nrdF; ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:yph03029]
D YPC_0559 infB; protein chain initiation factor 2, IF2 K02519 infB; translation initiation factor IF-2
D YPC_2069 Translation initiation factor 3 K02520 infC; translation initiation factor IF-3
D YPC_1084 tsf; elongation factor Ts K02357 tsf; elongation factor Ts
D YPC_0141 tufA; Translation elongation factor Tu K02358 tuf; elongation factor Tu
D YPC_0498 Translation elongation factor Tu K02358 tuf; elongation factor Tu
D YPC_0140 fusA; GTP-binding protein LepA K02355 fusA; elongation factor G
D YPC_3131 era; membrane-associated, 16S rRNA-binding GTPase K03595 era; GTPase
D YPC_1999 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D YPC_3265 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D YPC_2262 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D YPC_2272 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D YPC_0679 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D YPC_1091 yaeT; conserved protein K07277 SAM50; outer membrane protein insertion porin family
D YPC_4118 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D YPC_1160 grpE; heat shock protein K03687 GRPE; molecular chaperone GrpE
D YPC_0650 groL; Heat shock protein 60 family chaperone GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D YPC_0651 groS; Cpn10 chaperonin GroES, small subunit of GroESL K04078 groES; chaperonin GroES
D YPC_4117 dnaJ; chaperone Hsp40, co-chaperone with DnaK K03686 dnaJ; molecular chaperone DnaJ
D YPC_3092 iscS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YPC_2174 putative aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YPC_3089 hscB; chaperone protein DnaJ K04082 hscB; molecular chaperone HscB
D YPC_2014 grxD; monothiol glutaredoxin K07390 grxD; monothiol glutaredoxin
D YPC_2629 mrp; antiporter inner membrane protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D YPC_3453 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D YPC_4623 yidC; cytoplasmic insertase into membrane protein, Sec system K03217 yidC; YidC/Oxa1 family membrane protein insertase
D YPC_3399 htpG; molecular chaperone HSP90 family K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:yph02000]
D YPC_0774 ABC-transporter transmembrane protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D YPC_0775 ABC-transporter transmembrane protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D YPC_2775 msbA; lipid transporter subunit of ABC superfamily; membrane component K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D YPC_3428 mdlA; putative ATP-binding component of multidrug ABC transporter K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D YPC_3427 mdlB; putative ATP-binding component of multidrug ABC transporter K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D YPC_1879 type I secretion system ATPase K12530 rtxB; ATP-binding cassette, subfamily B, bacterial RtxB
D YPC_1883 putative toxin transport protein K12531 rtxE; ATP-binding cassette, subfamily B, bacterial RtxE
D YPC_0260 putative secretion ATPase K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D YPC_3289 putative ABC transport protein K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter
D YPC_2546 type I secretion system ATPase K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D YPC_0295 ABC transporter protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D YPC_2805 cydC; transport ATP-binding protein K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D YPC_2804 cydD; cysteine transporter subunit of ABC superfamily K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D YPC_1380 putative ABC transporter, ATP-binding protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D YPC_2817 Macrolide-specific ABC-type efflux carrier K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D YPC_2743 uup; DNA-binding ABC ATPase K15738 uup; ABC transport system ATP-binding/permease protein
D YPC_1364 Sulfate and thiosulfate binding protein cysP K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D YPC_0241 sbp; sulfate transporter subunit; periplasmic-binding component of ABC superfamily K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D YPC_1365 sulfate transport system permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D YPC_1366 cysW; sulfate transport system permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D YPC_1367 cysA; sulfate/thiosulfate transporter subunit; ATP-binding component of ABC superfamily K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D YPC_1201 modA; molybdate transporter subunit; periplasmic-binding component of ABC superfamily K02020 modA; molybdate transport system substrate-binding protein
D YPC_0242 Hypothetical ABC transport system, periplasmiccomponent K02020 modA; molybdate transport system substrate-binding protein
D YPC_1202 modB; molybdate transporter subunit; membrane component of ABC superfamily K02018 modB; molybdate transport system permease protein
D YPC_1203 modC; molybdate transporter subunit; ATP-binding component of ABC superfamily K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D YPC_1197 modF; ATP-binding component of molybdate ABC transporter K05776 modF; molybdate transport system ATP-binding protein
D YPC_0119 tauA; putative taurine-binding periplasmic protein precursor K15551 tauA; taurine transport system substrate-binding protein
D YPC_0121 tauC; putative taurine transport system permease protein K15552 tauC; taurine transport system permease protein
D YPC_0120 tauB; putative taurine transport ATP-binding protein K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7]
D YPC_4390 ssuA; putative aliphatic sulfonates binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D YPC_4388 ssuC; putative aliphatic sulfonates transport permease protein K15554 ssuC; sulfonate transport system permease protein
D YPC_4387 ssuB; putative aliphatic sulfonates transport ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D YPC_1323 putative exported protein K02012 afuA; iron(III) transport system substrate-binding protein
D YPC_1439 yfuA; iron(III)-binding periplasmic protein K02012 afuA; iron(III) transport system substrate-binding protein
D YPC_1324 putative binding protein-dependent transport system, inner-membrane component K02011 afuB; iron(III) transport system permease protein
D YPC_1437 Ferric iron ABC transporter, permease protein K02011 afuB; iron(III) transport system permease protein
D YPC_1438 Ferric iron ABC transporter, permease protein K02011 afuB; iron(III) transport system permease protein
D YPC_1325 putative ABC-transporter, ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D YPC_1436 yfuC; iron(III)-transport ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D YPC_4036 tbpA; periplasmic-binding component of thiamin ABC transporter K02064 thiB; thiamine transport system substrate-binding protein
D YPC_4035 thiP; membrane component of thiamin ABC transporter K02063 thiP; thiamine transport system permease protein
D YPC_4034 thiQ; ATP-binding component of thiamin ABC transporter K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D YPC_2855 potF; putrescine transporter subunit: periplasmic-binding component of ABC superfamily K11073 potF; putrescine transport system substrate-binding protein
D YPC_2852 potI; putrescine transporter subunit: membrane component of ABC superfamily K11074 potI; putrescine transport system permease protein
D YPC_2853 potH; putrescine transporter subunit: membrane component of ABC superfamily K11075 potH; putrescine transport system permease protein
D YPC_2854 potG; putrescine transporter subunit: ATP-binding component of ABC superfamily K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D YPC_1278 putative transport system periplasmic protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D YPC_2293 ABC transporter periplasmic solute-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D YPC_1280 putative ABC transporter permease K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D YPC_2292 ABC transporter permease protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D YPC_1279 putative ABC transporter permease K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D YPC_2291 ABC transporter permease protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D YPC_1275 ABC transporter, ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D YPC_2290 ABC transporter ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D YPC_3215 proX; glycine betaine transporter subunit; periplasmic-binding component of ABC superfamily K02002 proX; glycine betaine/proline transport system substrate-binding protein
D YPC_3214 proW; glycine betaine transporter subunit; membrane component of ABC superfamily K02001 proW; glycine betaine/proline transport system permease protein
D YPC_3213 proV; glycine betaine/L-proline transport ATP-binding protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D YPC_3016 Glycine betaine-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein
D YPC_3015 Glycine betaine-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein
D YPC_3012 putative ABC transport integral membrane subunit K05846 opuBD; osmoprotectant transport system permease protein
D YPC_3014 putative ABC transport integral membrane subunit K05846 opuBD; osmoprotectant transport system permease protein
D YPC_3013 putative ABC transport ATP-binding subunit K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D YPC_1907 hypothetical protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D YPC_1908 putative transport system permease K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D YPC_1909 Taurine ATP-binding component of a transportsystem K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D YPC_0037 malE; maltose-binding periplasmic protein precursor K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D YPC_0036 malF; maltose transport system permease protein MalF K10109 malF; maltose/maltodextrin transport system permease protein
D YPC_0035 malG; maltose transport system permease protein MalG K10110 malG; maltose/maltodextrin transport system permease protein
D YPC_0039 malK; maltose/maltodextrin transport ATP-binding protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPC_1648 mtlK; putative mannitol transport ATP-binding protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPC_0956 ganK; ATP-binding component of an ABC superfamily oligogalactan transporter K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPC_2359 maltose/maltodextrin transporter ATP-binding protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPC_2360 putative binding-protein-dependent transport system, ATP-binding component K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPC_3970 putative transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPC_3808 putative sugar ABC transporter, ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPC_0957 ganE; periplasmic-binding component of an ABC superfamily oligogalactan transporter K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein
D YPC_0958 ganF; membrane component of an ABC superfamily oligogalactan transporter K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D YPC_0959 ganG; membrane component of an ABC superfamily oligogalactan transporter K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D YPC_1886 araF; L-arabinose-binding periplasmic protein precursor AraF K10537 araF; L-arabinose transport system substrate-binding protein
D YPC_1888 araH; L-arabinose transport system permease protein K10538 araH; L-arabinose transport system permease protein
D YPC_1887 araG; L-arabinose transport ATP-binding protein AraG K10539 araG; L-arabinose transport system ATP-binding protein [EC:7.5.2.12]
D YPC_2097 putative sugar-binding protein K10192 togB; oligogalacturonide transport system substrate-binding protein
D YPC_2096 putative sugar ABC transporter K10195 togA; oligogalacturonide transport system ATP-binding protein
D YPC_2646 mglB; galactose-binding protein K10540 mglB; methyl-galactoside transport system substrate-binding protein
D YPC_2644 mglC; galactoside permease K10541 mglC; methyl-galactoside transport system permease protein
D YPC_2645 mglA; galactoside transport ATP-binding protein K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11]
D YPC_4550 sugar-binding periplasmic protein K10543 xylF; D-xylose transport system substrate-binding protein
D YPC_4548 sugar transport system permease protein K10544 xylH; D-xylose transport system permease protein
D YPC_4549 sugar transport ATP-binding protein K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10]
D YPC_4467 sugar-binding transport protein K10439 rbsB; ribose transport system substrate-binding protein
D YPC_0840 putative sugar ABC transporter periplasmic binding protein K10439 rbsB; ribose transport system substrate-binding protein
D YPC_1624 rbsB; sugar binding protein precursor K10439 rbsB; ribose transport system substrate-binding protein
D YPC_4468 sugar transport system permease protein K10440 rbsC; ribose transport system permease protein
D YPC_0842 putative sugar transport system permease protein K10440 rbsC; ribose transport system permease protein
D YPC_1626 putative sugar transport system, permease protein K10440 rbsC; ribose transport system permease protein
D YPC_4469 sugar transport ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D YPC_0841 putative sugar transport ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D YPC_1625 putative sugar transport system, ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D YPC_0315 putative periplasmic protein precursor K23508 ytfQ; galactofuranose transport system substrate-binding protein
D YPC_0316 putative sugar transport system ATP-binding protein K10820 ytfR; galactofuranose transport system ATP-binding protein [EC:7.5.2.9]
D YPC_3634 putative sugar ABC transporter, periplasmic protein K17202 eryG; erythritol transport system substrate-binding protein
D YPC_3631 putative sugar ABC transporter, permease protein K17203 eryF; erythritol transport system permease protein
D YPC_3632 putative sugar ABC transporter, ATP-binding protein K17204 eryE; erythritol transport system ATP-binding protein
D YPC_0953 sugar-binding periplasmic protein K17205 xltC; putative xylitol transport system substrate-binding protein
D YPC_0954 sugar transport system permease K17206 xltB; putative xylitol transport system permease protein
D YPC_0955 sugar transport ATP-binding protein K17207 xltA; putative xylitol transport system ATP-binding protein
D YPC_3296 putative sugar-binding periplasmic protein K17208 ibpA; inositol transport system substrate-binding protein
D YPC_3294 sugar transport system permease protein K17209 iatP; inositol transport system permease protein
D YPC_3295 sugar transport ATP-binding protein K17210 iatA; inositol transport system ATP-binding protein
D YPC_0443 ugpB; glycerol-3-phosphate-binding periplasmic protein K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein
D YPC_0444 ugpA; glycerol-3-phosphate transporter subunit; membrane component of ABC superfamily K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein
D YPC_0445 ugpE; glycerol-3-phosphate transporter subunit; membrane component of ABC superfamily K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein
D YPC_0446 ugpC; glycerol-3-phosphate transporter subunit; ATP-binding component of ABC superfamily K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10]
D YPC_4194 putative periplasmic solute-binding protein K10555 lsrB; AI-2 transport system substrate-binding protein
D YPC_4191 putative ABC transporter permease protein K10556 lsrC; AI-2 transport system permease protein
D YPC_4190 ribose ABC transporter, ATP-binding protein K10558 lsrA; AI-2 transport system ATP-binding protein
D YPC_4287 yrbD; putative ABC-type organic solvent transporter K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D YPC_4288 yrbE; putative toluene transporter subunit: membrane component of ABC superfamily K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D YPC_4289 yrbF; putative toluene transporter subunit: ATP-binding component of ABC superfamily K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D YPC_4286 yrbC; putative ABC-type organic solvent transporter K07323 mlaC; phospholipid transport system substrate-binding protein
D YPC_4285 yrbB; hypothetical protein K07122 mlaB; phospholipid transport system transporter-binding protein
D YPC_2363 putative exported solute-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D YPC_3811 putative sugar binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D YPC_1651 putative solute-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D YPC_3967 putative sugar binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D YPC_3966 putative permease protein K02025 ABC.MS.P; multiple sugar transport system permease protein
D YPC_3810 sugar transport system, permease protein K02025 ABC.MS.P; multiple sugar transport system permease protein
D YPC_1652 sugar ABC transporter, permease protein K02025 ABC.MS.P; multiple sugar transport system permease protein
D YPC_3965 putative permease K02026 ABC.MS.P1; multiple sugar transport system permease protein
D YPC_3809 sugar transport system, permease protein K02026 ABC.MS.P1; multiple sugar transport system permease protein
D YPC_1653 sugar ABC transporter, permease protein K02026 ABC.MS.P1; multiple sugar transport system permease protein
D YPC_4379 putative periplasmic binding protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein
D YPC_3645 putative sugar ABC transporter, periplasmic protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein
D YPC_2456 putative sugar-binding periplasmic protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein
D YPC_2634 putative sugar ABC transporter K02058 ABC.SS.S; simple sugar transport system substrate-binding protein
D YPC_2901 putative periplasmic carbohydrate-binding transport protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein
D YPC_2453 putative permease of ABC transporter K02057 ABC.SS.P; simple sugar transport system permease protein
D YPC_2458 putative sugar transport system permease protein K02057 ABC.SS.P; simple sugar transport system permease protein
D YPC_2597 ribose transport system, permease protein K02057 ABC.SS.P; simple sugar transport system permease protein
D YPC_2897 putative ABC transport integral membrane subunit K02057 ABC.SS.P; simple sugar transport system permease protein
D YPC_3649 putative sugar ABC transporter, permease protein K02057 ABC.SS.P; simple sugar transport system permease protein
D YPC_3650 putative sugar ABC transporter, permease protein K02057 ABC.SS.P; simple sugar transport system permease protein
D YPC_4376 putative ABC transporter, permease protein K02057 ABC.SS.P; simple sugar transport system permease protein
D YPC_4377 putative branched-chain amino acid transport system, permease component K02057 ABC.SS.P; simple sugar transport system permease protein
D YPC_4396 putative carbohydrate transport protein K02057 ABC.SS.P; simple sugar transport system permease protein
D YPC_4378 ABC transporter ATP binding protein K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPC_2899 sugar transport ATP-binding protein K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPC_3648 putative sugar ABC transporter, ATP-binding protein K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPC_2455 putative sugar ABC transporter, ATP-binding protein K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPC_2595 Ribose transport ATP-binding protein RbsA K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPC_2596 Ribose ABC transport system, ATP-binding protein RbsA K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPC_3489 pstS; phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein
D YPC_4640 phosphate transporter subunit; periplasmic-binding component of ABC superfamily K02040 pstS; phosphate transport system substrate-binding protein
D YPC_4639 pstC; phosphate transporter subunit; membrane component of ABC superfamily K02037 pstC; phosphate transport system permease protein
D YPC_4638 pstA; phosphate transporter subunit; membrane component of ABC superfamily K02038 pstA; phosphate transport system permease protein
D YPC_1289 putative phosphate transport ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D YPC_4637 pstB; phosphate transporter subunit; ATP-binding component of ABC superfamily K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D YPC_3029 putative substrate-binding periplasmic transport protein K02044 phnD; phosphonate transport system substrate-binding protein
D YPC_3026 Phosphonate ABC transporter permease protein PhnE1 K02042 phnE; phosphonate transport system permease protein
D YPC_3028 putative ABC transport membrane permease K02042 phnE; phosphonate transport system permease protein
D YPC_3030 putative ABC transport ATP-binding subunit K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D YPC_1531 hisM; histidine/lysine/arginine/ornithine transporter subunit; membrane component of ABC superfamily K10015 hisM; histidine transport system permease protein
D YPC_1530 hisQ; histidine/lysine/arginine/ornithine transporter subunit; membrane component of ABC superfamily K10016 hisQ; histidine transport system permease protein
D YPC_1532 hisP; histidine/lysine/arginine/ornithine transporter subunit; ATP-binding component of ABC superfamily K10017 hisP; histidine transport system ATP-binding protein [EC:7.4.2.1]
D YPC_1529 hisJ; histidine-binding periplasmic protein K10014 hisJ; histidine transport system substrate-binding protein
D YPC_1611 glnH; glutamine transporter subunit; periplasmic binding component of ABC superfamily K10036 glnH; glutamine transport system substrate-binding protein
D YPC_1610 glnP; glutamine transporter subunit; membrane component of ABC superfamily K10037 glnP; glutamine transport system permease protein
D YPC_1609 glnQ; glutamine transporter subunit; ATP-binding component of ABC superfamily K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1]
D YPC_2849 ABC transporter, periplasmic arginine-bindingprotein artI precursor K09996 artJ; arginine transport system substrate-binding protein
D YPC_2835 artI; arginine transporter subunit; periplasmic-binding component of ABC superfamily K09997 artI; arginine transport system substrate-binding protein
D YPC_2837 artM; arginine transporter subunit; membrane component of ABC superfamily K09998 artM; arginine transport system permease protein
D YPC_2836 artQ; arginine transporter subunit; membrane component of ABC superfamily K09999 artQ; arginine transport system permease protein
D YPC_2834 artP; arginine transporter subunit; ATP-binding component of ABC superfamily K10000 artP; arginine transport system ATP-binding protein [EC:7.4.2.1]
D YPC_3259 gltI; glutamate and aspartate transporter subunit, periplasmic-binding component of ABC superfamily K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D YPC_3261 gltK; glutamate and aspartate transporter subunit, membrane component of ABC superfamily K10002 gltK; glutamate/aspartate transport system permease protein
D YPC_3260 gltJ; glutamate and aspartate transporter subunit, membrane component of ABC superfamily K10003 gltJ; glutamate/aspartate transport system permease protein
D YPC_3262 gltL; glutamate and aspartate transporter subunit, ATP-binding component of ABC superfamily K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D YPC_2418 fliY; cystine transporter subunit; periplasmic-binding component of ABC superfamily K02424 tcyA; L-cystine transport system substrate-binding protein
D YPC_2417 yecS; putative transporter subunit: membrane component of ABC superfamily K10009 tcyB; L-cystine transport system permease protein
D YPC_2416 yecC; putative transporter subunit: ATP-binding component of ABC superfamily K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D YPC_0430 livK; branched-chain amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D YPC_0431 livH; leucine/isoleucine/valine transporter subunit; membrane component of ABC superfamily K01997 livH; branched-chain amino acid transport system permease protein
D YPC_0432 livM; leucine/isoleucine/valine transporter subunit; membrane component of ABC superfamily K01998 livM; branched-chain amino acid transport system permease protein
D YPC_0433 livG; leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily K01995 livG; branched-chain amino acid transport system ATP-binding protein
D YPC_0434 livF; leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily K01996 livF; branched-chain amino acid transport system ATP-binding protein
D YPC_1111 putative lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein
D YPC_2873 putative exported protein K02073 metQ; D-methionine transport system substrate-binding protein
D YPC_1112 metI; membrane component of DL-methionine uptake transporter (MUT) K02072 metI; D-methionine transport system permease protein
D YPC_2871 putative ABC transport integral membrane subunit K02072 metI; D-methionine transport system permease protein
D YPC_1113 metN; ATP-binding component of DL-methionine uptake transporter (MUT) K02071 metN; D-methionine transport system ATP-binding protein
D YPC_2872 putative ABC transport ATP-binding subunit K02071 metN; D-methionine transport system ATP-binding protein
D YPC_3024 putative substrate-binding periplasmic transport protein K11959 urtA; urea transport system substrate-binding protein
D YPC_3023 putative Branched-chain amino acid transport system, permease component K11960 urtB; urea transport system permease protein
D YPC_3021 putative ABC transport ATP-binding subunit K11962 urtD; urea transport system ATP-binding protein
D YPC_3020 putative ABC transport ATP-binding subunit K11963 urtE; urea transport system ATP-binding protein
D YPC_1211 putative amino acid transporter K11963 urtE; urea transport system ATP-binding protein
D YPC_4634 putative periplasmic solute-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D YPC_3553 putative amino acid ABC transporter, periplasmic protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D YPC_3551 putative amino acid ABC transporter, permease protein K02029 ABC.PA.P; polar amino acid transport system permease protein
D YPC_3552 putative amino acid ABC transporter, permease protein K02029 ABC.PA.P; polar amino acid transport system permease protein
D YPC_4632 putative amino acid transport system permease K02029 ABC.PA.P; polar amino acid transport system permease protein
D YPC_4633 ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein
D YPC_3550 putative amino acid ABC transporter, ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D YPC_1969 mppA; putative periplasmic murein peptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D YPC_1804 oppA; periplasmic oligopeptide-binding protein precursor K15580 oppA; oligopeptide transport system substrate-binding protein
D YPC_1805 oppB; oligopeptide transporter subunit; membrane component of ABC superfamily K15581 oppB; oligopeptide transport system permease protein
D YPC_1806 oppC; oligopeptide transport system permease protein K15582 oppC; oligopeptide transport system permease protein
D YPC_1807 oppD; oligopeptide transporter subunit; ATP-binding component of ABC superfamily K15583 oppD; oligopeptide transport system ATP-binding protein
D YPC_1808 oppF; ATP-binding subunit of oligopeptide ABC transporter K10823 oppF; oligopeptide transport system ATP-binding protein
D YPC_4513 dppA; periplasmic dipeptide transport protein K12368 dppA; dipeptide transport system substrate-binding protein
D YPC_4512 dppB; dipeptide transporter; membrane component of ABC superfamily K12369 dppB; dipeptide transport system permease protein
D YPC_4510 dppC; dipeptide transporter; membrane component of ABC superfamily K12370 dppC; dipeptide transport system permease protein
D YPC_4509 dppD; dipeptide transporter; ATP-binding component of ABC superfamily K12371 dppD; dipeptide transport system ATP-binding protein
D YPC_4508 dppF; dipeptide transporter; ATP-binding component of ABC superfamily K12372 dppF; dipeptide transport system ATP-binding protein
D YPC_1987 sapA; peptide transport periplasmic protein precursor K19226 sapA; cationic peptide transport system substrate-binding protein
D YPC_1988 sapB; putative antimicrobial peptide transporter subunit; membrane component of ABC superfamily K19227 sapB; cationic peptide transport system permease protein
D YPC_1989 sapC; putative antimicrobial peptide transporter subunit; membrane component of ABC superfamily K19228 sapC; cationic peptide transport system permease protein
D YPC_3786 Dipeptide-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D YPC_3201 putative solute-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D YPC_3787 putative transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D YPC_3200 putative membrane protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D YPC_3788 putative transporter, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D YPC_3199 binding-protein-dependent transport protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D YPC_3789 putative ABC transporter transporter, ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D YPC_3790 putative ABC transporter, ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein
D YPC_2925 yejA; putative oligopeptide transporter subunit; periplasmic-binding component of ABC superfamily K13893 yejA; microcin C transport system substrate-binding protein
D YPC_2926 yejB; putative oligopeptide transporter subunit; membrane component of ABC superfamily K13894 yejB; microcin C transport system permease protein
D YPC_2927 yejE; putative oligopeptide transporter subunit; membrane component of ABC superfamily K13895 yejE; microcin C transport system permease protein
D YPC_2928 putative ABC transporter ATP-binding protein K13896 yejF; microcin C transport system ATP-binding protein
D YPC_3720 fhuD; iron-hydroxamate transporter subunit; periplasmic-binding component of ABC superfamily K23227 fhuD; ferric hydroxamate transport system substrate-binding protein
D YPC_3719 fhuB; membrane component of ABC superfamily iron-hydroxamate transporter K23228 fhuB; ferric hydroxamate transport system permease protein
D YPC_3721 fhuC; ATP-binding component of iron-hydroxamate transporter K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16]
D YPC_0725 hmuT; hemin-binding periplasmic protein K25132 hmuT; heme transport system substrate-binding protein
D YPC_0726 hmuU; hemin transport system permease protein HmuU K25133 hmuU; heme transport system permease protein
D YPC_0727 hmuV; hemin transport system ATP-binding protein K10834 hmuV; heme transport system ATP-binding protein [EC:7.6.2.5]
D YPC_3873 periplasmic binding protein K23185 fepB; ferric enterobactin transport system substrate-binding protein
D YPC_2615 putative iron-siderophore transport system, periplasmic binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein
D YPC_2618 putative iron-siderophore transport system, membrane permease component K23187 fepG; iron-siderophore transport system permease protein
D YPC_2619 putative iron-siderophore transport system, ATP-binding component K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]
D YPC_4532 putative iron transport protein K25282 yclQ; iron-siderophore transport system substrate-binding protein
D YPC_4535 putative iron ABC transporter, ATP-binding protein K25285 yclP; iron-siderophore transport system ATP-binding protein [EC:7.2.2.-]
D YPC_0844 putative solute-binding periplasmic protein ofABC transporter K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D YPC_2881 yiuA; solute-binding periplasmic protein of iron/siderophore ABC transporter K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D YPC_2880 yiuB; inner membrane permease of iron/siderophore ABC transporter K02015 ABC.FEV.P; iron complex transport system permease protein
D YPC_2842 putative transport ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D YPC_2879 yiuC; ATP-binding protein of iron/siderophore ABC transporter K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D YPC_3711 btuF; Vitamin B12 ABC transporter, B12-bindingcomponent BtuF K06858 btuF; vitamin B12 transport system substrate-binding protein
D YPC_2060 btuC; vitamin B12 transporter subunit: membrane component of ABC superfamily K06073 btuC; vitamin B12 transport system permease protein
D YPC_2058 btuD; vitamin B12 transporter subunit : ATP-binding component of ABC superfamily K06074 btuD; vitamin B12 transport system ATP-binding protein [EC:7.6.2.8]
D YPC_2254 znuA; High-affinity zinc uptake system periplasmic protein K09815 znuA; zinc transport system substrate-binding protein
D YPC_2256 znuB; High-affinity zinc uptake system membrane protein K09816 znuB; zinc transport system permease protein
D YPC_2255 znuC; High-affinity zinc uptake system ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D YPC_2080 yfeA; periplasmic-binding protein K11604 sitA; manganese/iron transport system substrate-binding protein
D YPC_2081 yfeB; ATP-binding transport protein K11607 sitB; manganese/iron transport system ATP-binding protein
D YPC_4295 putative ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D YPC_1244 hypothetical protein K25180 ybhR; drug efflux transport system permease protein
D YPC_1245 hypothetical protein K25181 ybhS; drug efflux transport system permease protein
D YPC_1246 Uncharacterized ABC transporter ATP-binding protein K25182 ybhF; drug efflux transport system ATP-binding protein
D YPC_1247 Hypothetical UPF0194 membrane protein ybhG K25183 ybhG; membrane fusion protein YbhG
D YPC_1726 lolC; outer membrane-specific lipoprotein transporter subunit; membrane component of ABC superfamily K09808 lolC_E; lipoprotein-releasing system permease protein
D YPC_1728 lolE; outer membrane-specific lipoprotein transporter subunit; membrane component of ABC superfamily K09808 lolC_E; lipoprotein-releasing system permease protein
D YPC_1727 lolD; outer membrane-specific lipoprotein transporter subunit; ATP-binding component of ABC superfamily K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D YPC_1488 ccmD; putative heme exporter protein D K02196 ccmD; heme exporter protein D
D YPC_1487 ccmC; putative heme exporter protein C K02195 ccmC; heme exporter protein C
D YPC_1486 ccmB; heme exporter protein B K02194 ccmB; heme exporter protein B
D YPC_1485 ccmA; putative heme exporter protein A K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D YPC_0423 ftsX; putative transporter subunit: membrane component of ABC superfamily K09811 ftsX; cell division transport system permease protein
D YPC_0422 ftsE; putative transporter subunit: ATP-binding component of ABC superfamily K09812 ftsE; cell division transport system ATP-binding protein
D YPC_3735 yadH; putative transporter subunit: membrane component of ABC superfamily K01992 ABC-2.P; ABC-2 type transport system permease protein
D YPC_3736 yadG; putative transporter subunit: ATP-binding component of ABC superfamily K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D YPC_3357 ybbP; putative inner membrane protein K02004 ABC.CD.P; putative ABC transport system permease protein
D YPC_2655 putative membrane protein K02004 ABC.CD.P; putative ABC transport system permease protein
D YPC_3358 ybbA; putative transporter subunit: ATP-binding component of ABC superfamily K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D YPC_2657 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D YPC_2036 sufC; transport protein associated with Fe-S cluster assembly K09013 sufC; Fe-S cluster assembly ATP-binding protein
D YPC_1891 yfeH; putative inner membrane protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D YPC_0792 Sodium:sulfate symporter-family protein K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5
D YPC_2022 putative transport protein K26939 norM; MATE family, multidrug efflux pump
D YPC_2576 putative sugar transporter K26937 dinF; MATE family, multidrug efflux pump
D YPC_2557 Lactose permease K02532 lacY; MFS transporter, OHS family, lactose permease
D YPC_4040 putative efflux protein K03291 MFS.SET; MFS transporter, SET family, sugar efflux transporter
D YPC_4121 putative transport protein K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D YPC_1362 putative sugar transporter K03290 nanT; MFS transporter, SHS family, sialic acid transporter
D YPC_4093 exuT; ExuT transport protein K08191 exuT; MFS transporter, ACS family, aldohexuronate transporter
D YPC_2584 yfaV; putative transporter K26580 rhmT; MFS transporter, ACS family, inner membrane transport protein
D YPC_3101 hcaT; putative 3-phenylpropionic transporter K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter
D YPC_4519 uhpC; membrane protein regulates uhpT expression K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC
D YPC_1033 ygeD; putative inner membrane protein K08227 lplT; MFS transporter, LPLT family, lysophospholipid transporter
D YPC_3446 ampG; muropeptide transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D YPC_2932 bcr; bicyclomycin/multidrug efflux system K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D YPC_2166 putative multidrug resistance protein K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D YPC_4564 mdfA; multidrug translocase K08160 mdfA; MFS transporter, DHA1 family, multidrug/chloramphenicol efflux transport protein
D YPC_2279 mdtH; putative drug efflux system K08162 mdtH; MFS transporter, DHA1 family, multidrug resistance protein
D YPC_1025 putative sugar transport protein K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D YPC_3565 emrB; multidrug resistance protein B K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D YPC_2105 putative transport protein K08169 yebQ; MFS transporter, DHA2 family, multidrug resistance protein
D YPC_1271 yegB; putative membrane protein K18326 mdtD; MFS transporter, DHA2 family, multidrug resistance protein
D YPC_3375 rosA; putative membrane efflux protein K08223 fsr; MFS transporter, FSR family, fosmidomycin resistance protein
D YPC_1898 Permeases of the major facilitator superfamily K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein
D YPC_1776 putative membrane protein K26602 yihN; MFS transporter, GlpU family, inner membrane protein
D YPC_2792 MFS Superfamily transporter precursor K08219 UMF2; MFS transporter, UMF2 family, putative MFS family transporter protein
D YPC_2795 MFS Superfamily transporter precursor K08219 UMF2; MFS transporter, UMF2 family, putative MFS family transporter protein
D YPC_0101 tsgA; putative transporter K06141 tsgA; MFS transporter, TsgA protein
D YPC_1668 putative transporter protein K08368 yaaU; MFS transporter, putative metabolite transport protein
D YPC_1042 Phosphocarrier protein kinase/phosphorylase,nitrogen regulation associated K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D YPC_1391 ptsI; PTS sytem, enzyme I component K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D YPC_1041 Phosphocarrier protein kinase/phosphorylase,nitrogen regulation associated K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D YPC_1392 ptsH; phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr) K02784 ptsH; phosphocarrier protein HPr
D YPC_4301 npr; phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) K08485 ptsO; phosphocarrier protein NPr
D YPC_4199 putative phosphoenolpyruvate-protein phosphotransferase K23991 ptsA; multiphosphoryl transfer protein [EC:2.7.3.9 2.7.1.-]
D YPC_2894 fruB; IIA and HPr components of fructose-specific PTS enzyme K11183 fruB; multiphosphoryl transfer protein [EC:2.7.1.202]
D YPC_1390 crr; glucose-specific enzyme IIA component of PTS K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D YPC_1707 ptsG; PTS system, glucose-specific IIBC component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
D YPC_0962 ganC; pts system, N-acetylglucosamine-specific IIABC component K02778 ptsGb; glucose PTS system EIIB component [EC:2.7.1.199]
D YPC_3238 nagE; pts system, N-acetylglucosamine-specific IIABC component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D YPC_4307 treB; PTS system, trehalose-specific IIBC component K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D YPC_2892 fruA; PTS system, fructose-specific IIBC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D YPC_4201 PTS system, IIB component K11202 fryB; fructose-like PTS system EIIB component [EC:2.7.1.-]
D YPC_4202 PTS system, IIB component K11202 fryB; fructose-like PTS system EIIB component [EC:2.7.1.-]
D YPC_4200 PTS system, IIC component K11203 fryC; fructose-like PTS system EIIC or EIIBC or EIIABC component
D YPC_4588 mtlA; PTS system, mannitol-specific IIABC component K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D YPC_3178 celC; PTS system, cellobiose-specific IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D YPC_3180 celA; PTS system, cellobiose-specific IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D YPC_3179 celB; PTS system, cellobiose-specific IIC component K02761 celB; cellobiose PTS system EIIC component
D YPC_2524 mannose-specific PTS enzyme K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D YPC_2525 manY; mannose-specific enzyme IIC component of PTS K02795 manY; mannose PTS system EIIC component
D YPC_2526 manZ; mannose-specific enzyme IID component of PTS K02796 manZ; mannose PTS system EIID component
D YPC_0982 putative PTS permease protein K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D YPC_0985 manX; putative PTS transport protein K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-]
D YPC_1542 phosphotransferase enzyme II, A component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D YPC_1540 hypothetical protein K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D YPC_1538 putative membrane protein K03475 ulaA; ascorbate PTS system EIIC component
D YPC_4299 ptsN; sugar-specific enzyme IIA component of PTS K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D YPC_3184 putative potassium channel protein K10716 kch; voltage-gated potassium channel
D YPC_3425 amtB; ammonium transporter K03320 amt; ammonium transporter, Amt family
D YPC_1997 gst; glutathionine S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D YPC_2877 yliJ; putative glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D YPC_4274 sspA; stringent starvation protein A K03599 sspA; stringent starvation protein A
D YPC_1373 putative membrane protein K07114 yfbK; Ca-activated chloride channel homolog
D YPC_2788 focA; formate transporter K06212 focA; formate transporter
D YPC_0095 nirC; putative nitrite transporter K02598 nirC; nitrite transporter
D YPC_0177 mscL; mechanosensitive channel K03282 mscL; large conductance mechanosensitive channel
D YPC_3410 putative potassium efflux system K05802 mscK; potassium-dependent mechanosensitive channel
D YPC_0639 putative membrane transport protein K22051 mscM; miniconductance mechanosensitive channel
D YPC_0884 mscS; component of the MscS mechanosensitive channel K03442 mscS; small conductance mechanosensitive channel
D YPC_1658 putative membrane protein K16053 ybdG; miniconductance mechanosensitive channel
D YPC_1282 mgtE; putative divalent cation transport protein K06213 mgtE; magnesium transporter
D YPC_3187 putative urea transporter K08717 utp; urea transporter
D YPC_1772 motA; chemotaxis MotA protein K02556 motA; chemotaxis protein MotA
D YPC_1773 motB; chemotaxis MotB protein K02557 motB; chemotaxis protein MotB
D YPC_3892 exbB; membrane spanning protein in TonB-ExbB-ExbD complex K03561 exbB; biopolymer transport protein ExbB
D YPC_3891 exbD; membrane spanning protein in TonB-ExbB-ExbD complex K03559 exbD; biopolymer transport protein ExbD
D YPC_1175 tolQ; membrane spanning protein in TolA-TolQ-TolR complex K03562 tolQ; biopolymer transport protein TolQ
D YPC_1176 tolR; membrane spanning protein in TolA-TolQ-TolR complex K03560 tolR; biopolymer transport protein TolR
D YPC_0395 corA; magnesium and cobalt transport protein K03284 corA; magnesium transporter
D YPC_1968 ydaN; putative Zn(II) transporter K16074 zntB; zinc transporter
D YPC_3280 crcB; putative inner membrane protein associated with chromosome condensation K06199 crcB; fluoride exporter
D YPC_3182 putative membrane protein K06199 crcB; fluoride exporter
D YPC_3183 putative membrane protein K06199 crcB; fluoride exporter
D YPC_0594 ytfL; putative inner membrane protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D YPC_3607 yfjD; putative membrane protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D YPC_2755 ompF; putative outer membrane porin C protein K09476 ompF; outer membrane pore protein F
D YPC_3006 ompC2; outer membrane protein C2 K11929 phoE; outer membrane pore protein E
D YPC_2985 ompC; outer membrane protein C, porin K09475 ompC; outer membrane pore protein C
D YPC_0040 lamB; maltoporin K02024 lamB; maltoporin
D YPC_0963 ganL; galactan outer membrane porin K02024 lamB; maltoporin
D YPC_2726 ompA; outer membrane protein A K03286 TC.OOP; OmpA-OmpF porin, OOP family
D YPC_1619 ompX; putative outer membrane protein K11934 ompX; outer membrane protein X
D YPC_3103 attachment invasion locus protein K16078 ail; attachment invasion locus protein
D YPC_1495 fadL; long-chain fatty acid outer membrane transporter K06076 fadL; long-chain fatty acid transport protein
D YPC_0342 putative outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPC_4839 caf1A; putative F1 capsule anchoring protein K07347 fimD; outer membrane usher protein
D YPC_1455 putative outer membrane fimbrial usher porinprecursor K07347 fimD; outer membrane usher protein
D YPC_2108 putative outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPC_2123 putative outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPC_2887 psaC; outer membrane usher protein PsaC precursor K07347 fimD; outer membrane usher protein
D YPC_0305 btuB; vitamin B12/cobalamin outer membrane transporter K16092 btuB; vitamin B12 transporter
D YPC_0294 hemophore HasA K12545 hasA; heme acquisition protein HasA
D YPC_2614 putative iron-siderophore receptor K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid
D YPC_3658 putative outer membrane receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins
D YPC_2878 yiuR; TonB-dependent receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins
D YPC_0723 hmuR; hemin receptor precursor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D YPC_0843 putative hydroxamate-type ferrisiderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D YPC_2529 ferrichrome receptor protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D YPC_0102 putative membrane receptor protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D YPC_0798 iutA; putative ferric siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D YPC_0537 putative TonB-dependent outer membrane receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D YPC_3912 tolC; transport channel K12340 tolC; outer membrane protein
D YPC_3820 ibeB; putative outer membrane efflux lipoprotein K18139 oprM; outer membrane protein, multidrug efflux system
D YPC_1091 yaeT; conserved protein K07277 SAM50; outer membrane protein insertion porin family
D YPC_3065 yfgL; protein assembly complex, lipoprotein component K17713 bamB; outer membrane protein assembly factor BamB
D YPC_1310 nlpB; lipoprotein K07287 bamC; outer membrane protein assembly factor BamC
D YPC_3582 yfiO; Lipoprotein required for outer membrane biogenesis K05807 bamD; outer membrane protein assembly factor BamD
D YPC_1157 Outer membrane lipoprotein OmlA K06186 bamE; outer membrane protein assembly factor BamE
D YPC_0592 ytfM; putative outer membrane protein and surface antigen K07278 tamA; translocation and assembly module TamA
D YPC_4504 putative exported protein K22110 kdgM; oligogalacturonate-specific porin family protein
D YPC_2098 putative exported protein K22110 kdgM; oligogalacturonate-specific porin family protein
D YPC_4294 Protein yhbN precursor K09774 lptA; lipopolysaccharide export system protein LptA
D YPC_4293 yrbK; conserved protein K11719 lptC; lipopolysaccharide export system protein LptC
D YPC_4007 imp; exported protein required for envelope biosynthesis and integrity K04744 lptD; LPS-assembly protein
D YPC_3266 rlpB; minor lipoprotein K03643 lptE; LPS-assembly lipoprotein
D YPC_4694 yopD; putative secreted pore/translocation protein K23476 yopD; transloator
D YPC_0665 putative exported protein K19298 subB; subtilase cytotoxin, subunit B
D YPC_3257 corC; putative ion transport K06189 corC; hemolysin (HlyC) family protein
D YPC_2638 yohJ; conserved inner membrane protein K06518 cidA; holin-like protein
D YPC_2977 putative transport protein K16210 togT; oligogalacturonide transporter
D YPC_3757 aroP; aromatic amino acid transport protein K11734 aroP; aromatic amino acid transport protein AroP
D YPC_2538 aromatic amino acid transport protein K11734 aroP; aromatic amino acid transport protein AroP
D YPC_3487 proY; putative proline-specific permease K11736 proY; proline-specific permease ProY
D YPC_2404 D-serine/D-alanine/glycine transporter K11737 cycA; D-serine/D-alanine/glycine transporter
D YPC_4525 amino acid permease K16234 hutT; histidine transporter
D YPC_1932 putative amino acid antiporter K03758 arcD; arginine:ornithine antiporter / lysine permease
D YPC_3010 Arginine/agmatine antiporter K03759 adiC; arginine:agmatine antiporter
D YPC_3921 yjeH; putative transporter K16263 yjeH; amino acid efflux transporter
D YPC_1186 zitB; zinc efflux system K16264 czcD; cobalt-zinc-cadmium efflux system protein
D YPC_0239 fieF; zinc transporter K13283 fieF; ferrous-iron efflux pump FieF
D YPC_3821 multidrug efflux protein K18138 acrB; multidrug efflux pump
D YPC_3414 acrB; multidrug efflux protein K18138 acrB; multidrug efflux pump
D YPC_0549 putative integral membrane efflux protein K18138 acrB; multidrug efflux pump
D YPC_1962 qacE; quaternary ammonium compound-resistance protein K03297 emrE; small multidrug resistance pump
D YPC_0646 sugE; putative chaperone K11741 sugE; quaternary ammonium compound-resistance protein SugE
D YPC_3169 hypothetical protein K08978 TC.BAT1; bacterial/archaeal transporter family protein
D YPC_1617 rhtA; threonine and homoserine efflux system K11939 rhtA; inner membrane transporter RhtA
D YPC_0668 rhaT; L-rhamnose-proton symport protein K02856 rhaT; L-rhamnose-H+ transport protein
D YPC_0396 rarD; putative chloramphenical resistance permease K05786 rarD; chloramphenicol-sensitive protein RarD
D YPC_2052 putative membrane protein K12962 arnE; undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnE
D YPC_0779 gntP; putative gluconate transporter K16321 gntP; high-affinity gluconate transporter
D YPC_4457 gntT; putative gluconate permease K06155 gntT; Gnt-I system high-affinity gluconate transporter
D YPC_4487 GntP family permease K03299 TC.GNTP; gluconate:H+ symporter, GntP family
D YPC_0655 dcuA; C4-dicarboxylate antiporter K07791 dcuA; anaerobic C4-dicarboxylate transporter DcuA
D YPC_3593 putative anaerobic c4-dicarboxylate transportprotein K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D YPC_1228 betT; high-affinity choline transport protein K02168 betT; choline/glycine/proline betaine transport protein
D YPC_4290 yrbG; putative calcium/sodium:proton antiporter K07301 yrbG; cation:H+ antiporter
D YPC_4472 phosphate transport protein K16322 pit; low-affinity inorganic phosphate transporter
D YPC_4353 panF; pantothenate:sodium symporter K14392 panF; sodium/pantothenate symporter
D YPC_2410 putP; proline:sodium symporter K11928 putP; sodium/proline symporter
D YPC_0759 actP; acetate permease K14393 actP; cation/acetate symporter
D YPC_0756 gltP; glutamate/aspartate:proton symporter K11102 gltP; proton glutamate symport protein
D YPC_4501 dctA; C4-dicarboxylic acid, orotate and citrate transporter K11103 dctA; aerobic C4-dicarboxylate transport protein
D YPC_3996 putative transport protein K07862 sstT; serine/threonine transporter
D YPC_0194 gltS; sodium/glutamate symport carrier protein K03312 gltS; glutamate:Na+ symporter, ESS family
D YPC_4116 nhaA; sodium-proton antiporter K03313 nhaA; Na+:H+ antiporter, NhaA family
D YPC_2170 nhaB; Na+/H+ antiporter K03314 nhaB; Na+:H+ antiporter, NhaB family
D YPC_4382 yjcE; putative cation/proton antiporter K24163 nhaK; monovalent cation/hydrogen antiporter
D YPC_0128 kefB; putative potassium-efflux system protein K11747 kefB; glutathione-regulated potassium-efflux system protein KefB
D YPC_0127 kefG; component of potassium effux complex with KefB K11748 kefG; glutathione-regulated potassium-efflux system ancillary protein KefG
D YPC_3376 ybaL; putative transporter with NAD(P)-binding Rossmann-fold domain K26735 KEA4_5_6; K+:H+ antiporter
D YPC_0479 trkH; Trk system potassium uptake protein TrkH K03498 trkH; trk/ktr system potassium uptake protein
D YPC_0178 trkA; D-amino acid dehydrogenase small subunit K03499 trkA; trk/ktr system potassium uptake protein
D YPC_0193 putative membrane permease K16345 xanP; xanthine permease XanP
D YPC_4383 putative xanthine/uracil permease K06901 pbuG; adenine/guanine/hypoxanthine permease
D YPC_4629 yieG; Xanthine/uracil permeases family protein K06901 pbuG; adenine/guanine/hypoxanthine permease
D YPC_1409 nupC; nucleoside permease K11535 nupC; nucleoside transport protein
D YPC_3002 tyrP; tyrosine-specific transport protein K03834 tyrP; tyrosine-specific transport protein
D YPC_2909 mtr; putative tryptophan-specific transport protein K03835 mtr; tryptophan-specific transport protein
D YPC_2868 Serine transporter K03837 sdaC; serine transporter
D YPC_0729 putative transmembrane transport protein K26603 yhjV; inner membrane transport protein
D YPC_1903 putative membrane protein K03281 clcA; chloride channel protein, CIC family
D YPC_3186 putative nickel transport protein K07241 hoxN; nickel/cobalt transporter (NiCoT) family protein
D YPC_2296 putative sulfate permease K03321 TC.SULP; sulfate permease, SulP family
D YPC_1410 mntH; Manganese transport protein MntH K03322 mntH; manganese transport protein
D YPC_3665 arsB; arsenical pump membrane protein K03893 arsB; arsenical pump membrane protein
D YPC_0364 wzxE; lipid III translocase K16693 wzxE; enterobacterial common antigen flippase
D YPC_2275 yceN; putative inner membrane protein K03980 murJ; putative peptidoglycan lipid II flippase
D YPC_0448 putative membrane protein K13936 mdcF; malonate transporter and related proteins
D YPC_3061 putative AEC family malate permease K13936 mdcF; malonate transporter and related proteins
D YPC_0006 trkD; potassium transporter K03549 kup; KUP system potassium uptake protein
D YPC_0885 argO; arginine transporter K06895 lysE; L-lysine exporter family protein LysE/ArgO
D YPC_0402 rhtB; homoserine/homoserine lactone efflux protein K05834 rhtB; homoserine/homoserine lactone efflux protein
D YPC_0401 rhtC; threonine efflux protein K05835 rhtC; threonine efflux protein
D YPC_4103 putative LysE type translocator K05835 rhtC; threonine efflux protein
D YPC_3561 putative amino acid transporter K26605 azlC; branched chain amino acid efflux pump
D YPC_3562 putative membrane protein K26606 azlD; branched chain amino acid efflux pump
D YPC_4319 p-hydroxybenzoic acid efflux pump subunit AaeB K03468 aaeB; p-hydroxybenzoic acid efflux pump subunit AaeB
D YPC_3961 putative membrane protein K15547 mdtO; multidrug resistance protein MdtO
D YPC_1302 putative membrane protein K03548 perM; putative permease
D YPC_0412 yhhQ; conserved inner membrane protein K09125 yhhQ; queuosine precursor transporter
D YPC_2078 marC; multiple antibiotic resistance protein K05595 marC; multiple antibiotic resistance protein
D YPC_4066 ftsW; cell division membrane protein K03588 ftsW; cell division protein FtsW
D YPC_2528 yebN; conserved inner membrane protein K23242 mntP; manganese efflux pump family protein
D YPC_2409 putative cytochrome K07243 FTR; high-affinity iron transporter
D YPC_2408 Protein ycdO K07224 efeO; iron uptake system component EfeO
D YPC_2407 Dyp-type peroxidase family protein K16301 efeB; deferrochelatase/peroxidase EfeB [EC:1.11.1.-]
D YPC_3098 putative membrane protein K08970 rcnA; nickel/cobalt transporter (NicO) family protein
D YPC_0297 putative membrane protein K03832 tonB; periplasmic protein TonB
D YPC_1819 tonB; TonB protein K03832 tonB; periplasmic protein TonB
D YPC_1179 pal; peptidoglycan-associated outer membrane lipoprotein K03640 pal; peptidoglycan-associated lipoprotein
D YPC_1177 tolA; membrane anchored protein in TolA-TolQ-TolR complex K03646 tolA; colicin import membrane protein
D YPC_1178 tolB; periplasmic protein K03641 tolB; TolB protein
D YPC_3642 anaerobic dimethyl sulfoxide reductase chain A K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]
D YPC_1431 dmsA; putative dimethyl sulfoxide reductase chain A protein K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]
D YPC_3641 anaerobic dimethyl sulfoxide reductase chain B K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B
D YPC_1430 dmsB; putative dimethyl sulfoxide reductase chain B protein K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B
D YPC_3640 anaerobic dimethyl sulfoxide reductase chain C K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C
D YPC_1429 dmsC; putative dimethyl sulfoxide reductase chain C protein K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C
D YPC_1029 Biotin sulfoxide reductase K08351 bisC; biotin/methionine sulfoxide reductase [EC:1.-.-.-]
D YPC_3564 emrA; multidrug resistance protein A K03543 emrA; membrane fusion protein, multidrug efflux system
D YPC_3960 putative HlyD family secretion protein K15549 mdtN; membrane fusion protein, multidrug efflux system
D YPC_0296 HlyD family secretion protein K12537 hasE; membrane fusion protein, type I secretion system
D YPC_1881 putative ABC associated RTX toxin transporter,HlyD/MFP family K12532 rtxD; membrane fusion protein, RTX toxin transport system
D YPC_0261 putative secretion permease K13408 cvaA; membrane fusion protein
D YPC_3413 acrA; multidrug efflux protein K03585 acrA; membrane fusion protein, multidrug efflux system
D YPC_1200 putative membrane protein K25859 acrZ; accessory protein, multidrug efflux pump
D YPC_1274 mdtA; multidrug efflux system, subunit A K07799 mdtA; membrane fusion protein, multidrug efflux system
D YPC_1381 putative HlyD family secretion protein K13888 macA; membrane fusion protein, macrolide-specific efflux system
D YPC_2818 macA; macrolide-specific efflux protein K13888 macA; membrane fusion protein, macrolide-specific efflux system
D YPC_4320 p-hydroxybenzoic acid efflux pump subunit AaeA K15548 aaeA; p-hydroxybenzoic acid efflux pump subunit AaeA
D YPC_1185 pnuC; putative nicotinamide mononucleotide transporter K03811 pnuC; nicotinamide mononucleotide transporter
D YPC_0068 feoA; hypothetical ferrous iron transport protein A K04758 feoA; ferrous iron transport protein A
D YPC_0067 feoB; ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B
D YPC_0066 hypothetical protein K07490 feoC; ferrous iron transport protein C
D YPC_4475 uspB; universal stress protein B K06144 uspB; universal stress protein B
D YPC_1961 putative membrane protein K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
D YPC_1766 mgtC; Mg(2+) transport ATPase protein C K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
D YPC_2493 putative copper resistance protein D K07245 pcoD; copper resistance protein D
D YPC_2494 putative copper resistance protein K07156 copC; copper resistance protein C
D YPC_2159 mipA; scaffolding protein for murein synthesizing machinery K07274 mipA; MipA family protein
C 02044 Secretion system [BR:yph02044]
D YPC_3912 tolC; transport channel K12340 tolC; outer membrane protein
D YPC_1879 type I secretion system ATPase K12530 rtxB; ATP-binding cassette, subfamily B, bacterial RtxB
D YPC_1883 putative toxin transport protein K12531 rtxE; ATP-binding cassette, subfamily B, bacterial RtxE
D YPC_1881 putative ABC associated RTX toxin transporter,HlyD/MFP family K12532 rtxD; membrane fusion protein, RTX toxin transport system
D YPC_0295 ABC transporter protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D YPC_0296 HlyD family secretion protein K12537 hasE; membrane fusion protein, type I secretion system
D YPC_0261 putative secretion permease K13408 cvaA; membrane fusion protein
D YPC_0260 putative secretion ATPase K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D YPC_1004 general secretion pathway protein C K02452 gspC; general secretion pathway protein C
D YPC_1005 general secretion pathway protein D K02453 gspD; general secretion pathway protein D
D YPC_1006 general secretion pathway protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D YPC_1008 General secretion pathway protein F K02455 gspF; general secretion pathway protein F
D YPC_1009 general secretion pathway protein G K02456 gspG; general secretion pathway protein G
D YPC_1010 general secretion pathway protein H K02457 gspH; general secretion pathway protein H
D YPC_1011 general secretion pathway protein I K02458 gspI; general secretion pathway protein I
D YPC_1012 general secretion pathway protein J K02459 gspJ; general secretion pathway protein J
D YPC_1013 general secretion pathway protein K K02460 gspK; general secretion pathway protein K
D YPC_1014 general secretion pathway protein L K02461 gspL; general secretion pathway protein L
D YPC_1016 prepilin peptidase K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-]
D YPC_1017 putative lipoprotein K02465 gspS; general secretion pathway protein S
D YPC_3071 putative fimbrial biogenesis protein K02656 pilF; type IV pilus assembly protein PilF
D YPC_0860 yggR; putative transporter K02669 pilT; twitching motility protein PilT
D YPC_3879 Type IV prepilin peptidase TadV/CpaA K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D YPC_3880 Flp pilus assembly protein RcpC/CpaB K02279 cpaB; pilus assembly protein CpaB
D YPC_3881 Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly K02280 cpaC; pilus assembly protein CpaC
D YPC_3883 Type II/IV secretion system ATPase TadZ/CpaE,associated with Flp pilus assembly K02282 cpaE; pilus assembly protein CpaE
D YPC_3884 Type II/IV secretion system ATP hydrolaseTadA/VirB11/CpaF, TadA subfamily K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D YPC_3885 Flp pilus assembly protein TadB K12510 tadB; tight adherence protein B
D YPC_3886 Type II/IV secretion system protein TadC,associated with Flp pilus assembly K12511 tadC; tight adherence protein C
D YPC_3887 Flp pilus assembly protein TadD, contains TPRrepeat K12512 tadD; tight adherence protein D
D YPC_3888 Flp pilus assembly membrane protein TadE K12513 tadE; tight adherence protein E
D YPC_3889 hypothetical protein K12514 tadF; tight adherence protein F
D YPC_3890 tadG; putative fimbrial anchor K12515 tadG; tight adherence protein G
D YPC_1045 Prepilin peptidase dependent protein Aprecursor K02679 ppdA; prepilin peptidase dependent protein A
D YPC_1046 putative prepilin peptidase dependent protein K02680 ppdB; prepilin peptidase dependent protein B
D YPC_1048 putative prepilin peptidase dependent protein K02681 ppdC; prepilin peptidase dependent protein C
D YPC_3762 ppdD; putative major pilin subunit K02682 ppdD; prepilin peptidase dependent protein D
D YPC_3763 hofB; conserved protein with nucleoside triphosphate hydrolase domain K02504 hofB; protein transport protein HofB
D YPC_3764 hofC; putative type II secretion system protein K02505 hofC; protein transport protein HofC
D YPC_0081 Type IV pilus biogenesis protein PilM K12288 hofM; pilus assembly protein HofM
D YPC_0082 Type IV pilus biogenesis protein PilN K12289 hofN; pilus assembly protein HofN
D YPC_0086 hofQ; putative fimbrial transporter K02507 hofQ; protein transport protein HofQ
D YPC_0857 yggT; putative inner membrane protein K02221 yggT; YggT family protein
D YPC_3436 putative exported protein K02237 comEA; competence protein ComEA
D YPC_2776 putative membrane protein K02238 comEC; competence protein ComEC
D YPC_0752 putative type III secretion protein K03219 yscC; type III secretion protein C
D YPC_0751 putative type-III secretion protein K03220 yscD; type III secretion protein D
D YPC_4722 yscF; Type III secretion needle protein K03221 yscF; type III secretion protein F
D YPC_4725 yscI; putative type III secretion protein K04053 yscI; type III secretion protein I
D YPC_0745 type III secretion system apparatus lipoprotein K03222 yscJ; type III secretion protein J
D YPC_4726 yscJ; putative type III secretion lipoprotein K03222 yscJ; type III secretion protein J
D YPC_0741 putative type III secretion system ATP synthase K03224 yscN; ATP synthase in type III secretion protein N [EC:7.4.2.8]
D YPC_0738 type III secretion system apparatus protein K03225 yscQ; type III secretion protein Q
D YPC_0742 secretion system apparatus protein K03230 yscV; type III secretion protein V
D YPC_4716 yscA; hypothetical protein YPCD1.50 K04048 yscA; type III secretion protein A
D YPC_4717 yscB; component of negative regulator complex for Yop secretion K04049 yscB; type III secretion protein B
D YPC_4729 lcrQ; putative type III secretion regulatory protein K04055 yscM; type III secretion protein M
D YPC_3867 Flagellar biosynthesis protein flhA K02400 flhA; flagellar biosynthesis protein FlhA
D YPC_3866 lfhB; lateral flagellar export and assembly protein K02401 flhB; flagellar biosynthesis protein FlhB
D YPC_2486 Flagellar biosynthesis protein flhB K02401 flhB; flagellar biosynthesis protein FlhB
D YPC_3858 Flagellar M-ring protein fliF K02409 fliF; flagellar M-ring protein FliF
D YPC_2436 fliF; flagellar M-ring protein K02409 fliF; flagellar M-ring protein FliF
D YPC_3856 Flagellar assembly protein fliH K02411 fliH; flagellar assembly protein FliH
D YPC_2438 fliH; flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D YPC_3855 lfiI; lateral flagellar assembly ATPase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D YPC_2439 Flagellum-specific ATP synthase fliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D YPC_3862 Flagellar motor switch protein fliN K02417 fliN; flagellar motor switch protein FliN
D YPC_2445 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D YPC_2446 fliO; flagellar protein FliO K02418 fliO; flagellar protein FliO/FliZ
D YPC_3863 Flagellar biosynthesis protein fliP K02419 fliP; flagellar biosynthesis protein FliP
D YPC_2447 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D YPC_3864 Flagellar biosynthesis protein fliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D YPC_2448 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D YPC_3865 Flagellar biosynthesis protein fliR K02421 fliR; flagellar biosynthesis protein FliR
D YPC_2449 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D YPC_0917 dsbC; protein disulfide isomerase II K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D YPC_4753 Adhesin yadA precursor K12341 yadA; adhesin YadA
D YPC_0029 Hemolysin activator protein precursor K11017 shlB; hemolysin activation/secretion protein
D YPC_2274 putative hemolysin activator protein K11017 shlB; hemolysin activation/secretion protein
D YPC_0028 hemolysin K11016 shlA; hemolysin
D YPC_2273 putative hemolysin K11016 shlA; hemolysin
D YPC_4418 putative exported protein K11891 impL; type VI secretion system protein ImpL
D YPC_1469 putative membrane protein precursor K11891 impL; type VI secretion system protein ImpL
D YPC_4028 putative membrane protein precursor K11891 impL; type VI secretion system protein ImpL
D YPC_2673 putative membrane protein K11891 impL; type VI secretion system protein ImpL
D YPC_4423 putative membrane protein K11892 impK; type VI secretion system protein ImpK
D YPC_0821 putative membrane protein K11892 impK; type VI secretion system protein ImpK
D YPC_1467 putative OmpA family protein K11892 impK; type VI secretion system protein ImpK
D YPC_2689 putative membrane protein K11892 impK; type VI secretion system protein ImpK
D YPC_1464 Flagellar motor rotation protein motB K11892 impK; type VI secretion system protein ImpK
D YPC_4424 hypothetical protein K11893 impJ; type VI secretion system protein ImpJ
D YPC_0820 hypothetical protein K11893 impJ; type VI secretion system protein ImpJ
D YPC_1463 hypothetical protein K11893 impJ; type VI secretion system protein ImpJ
D YPC_4025 hypothetical protein K11893 impJ; type VI secretion system protein ImpJ
D YPC_2690 hypothetical protein K11893 impJ; type VI secretion system protein ImpJ
D YPC_4017 hypothetical protein K11895 impH; type VI secretion system protein ImpH
D YPC_4428 Uncharacterized protein ImpH K11895 impH; type VI secretion system protein ImpH
D YPC_1449 hypothetical protein K11895 impH; type VI secretion system protein ImpH
D YPC_2668 hypothetical protein K11895 impH; type VI secretion system protein ImpH
D YPC_0051 Protein ImpG/VasA K11896 impG; type VI secretion system protein ImpG
D YPC_4016 hypothetical protein K11896 impG; type VI secretion system protein ImpG
D YPC_1450 hypothetical protein K11896 impG; type VI secretion system protein ImpG
D YPC_2669 hypothetical protein K11896 impG; type VI secretion system protein ImpG
D YPC_4015 hypothetical protein K11897 impF; type VI secretion system protein ImpF
D YPC_1475 hypothetical protein K11897 impF; type VI secretion system protein ImpF
D YPC_0046 hypothetical protein K11900 impC; type VI secretion system protein ImpC
D YPC_4013 hypothetical protein K11900 impC; type VI secretion system protein ImpC
D YPC_0819 hypothetical protein K11900 impC; type VI secretion system protein ImpC
D YPC_1460 hypothetical protein K11900 impC; type VI secretion system protein ImpC
D YPC_2691 hypothetical protein K11900 impC; type VI secretion system protein ImpC
D YPC_0045 hypothetical protein K11901 impB; type VI secretion system protein ImpB
D YPC_0818 hypothetical protein K11901 impB; type VI secretion system protein ImpB
D YPC_1459 hypothetical protein K11901 impB; type VI secretion system protein ImpB
D YPC_4012 hypothetical protein K11901 impB; type VI secretion system protein ImpB
D YPC_2692 hypothetical protein K11901 impB; type VI secretion system protein ImpB
D YPC_1448 hypothetical protein K11902 impA; type VI secretion system protein ImpA
D YPC_4011 hypothetical protein K11902 impA; type VI secretion system protein ImpA
D YPC_0044 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp
D YPC_4014 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp
D YPC_0823 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp
D YPC_1461 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp
D YPC_2687 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp
D YPC_2685 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPC_0825 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPC_1471 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPC_0785 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPC_4404 putative Rhs accessory genetic element K11904 vgrG; type VI secretion system secreted protein VgrG
D YPC_4415 putative Rhs accessory genetic element K11904 vgrG; type VI secretion system secreted protein VgrG
D YPC_4019 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPC_0047 hypothetical protein K11905 K11905; type VI secretion system protein
D YPC_2666 hypothetical protein K11905 K11905; type VI secretion system protein
D YPC_4425 putative lipoprotein K11906 vasD; type VI secretion system protein VasD
D YPC_1462 putative exported protein precursor K11906 vasD; type VI secretion system protein VasD
D YPC_4024 putative lipoprotein K11906 vasD; type VI secretion system protein VasD
D YPC_2667 putative lipoprotein K11906 vasD; type VI secretion system protein VasD
D YPC_4018 ClpB protein K11907 vasG; type VI secretion system protein VasG
D YPC_4422 ClpB protein K11907 vasG; type VI secretion system protein VasG
D YPC_0824 Clp ATPase K11907 vasG; type VI secretion system protein VasG
D YPC_1452 ClpB protein K11907 vasG; type VI secretion system protein VasG
D YPC_2686 ClpB protein K11907 vasG; type VI secretion system protein VasG
D YPC_4419 hypothetical protein K11910 vasJ; type VI secretion system protein VasJ
D YPC_2672 hypothetical protein K11910 vasJ; type VI secretion system protein VasJ
D YPC_4416 hypothetical protein K11911 vasL; type VI secretion system protein VasL
D YPC_4417 hypothetical protein K11911 vasL; type VI secretion system protein VasL
D YPC_2665 hypothetical protein K11911 vasL; type VI secretion system protein VasL
D YPC_4427 hypothetical protein K11894 impI; type VI secretion system protein ImpI
D YPC_1474 Protein of avirulence locus ImpE K11898 impE; type VI secretion system protein ImpE
D YPC_4420 hypothetical protein K11909 vasI; type VI secretion system protein VasI
D YPC_0344 putative fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D YPC_1453 frimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D YPC_2107 putative fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D YPC_2110 putative fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D YPC_0343 putative fimbrial chaperone K07346 fimC; fimbrial chaperone protein
D YPC_2106 putative chaperone protein K07346 fimC; fimbrial chaperone protein
D YPC_2122 putative chaperone protein K07346 fimC; fimbrial chaperone protein
D YPC_0342 putative outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPC_4839 caf1A; putative F1 capsule anchoring protein K07347 fimD; outer membrane usher protein
D YPC_1455 putative outer membrane fimbrial usher porinprecursor K07347 fimD; outer membrane usher protein
D YPC_2108 putative outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPC_2123 putative outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPC_2887 psaC; outer membrane usher protein PsaC precursor K07347 fimD; outer membrane usher protein
D YPC_2120 putative exported protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPC_2125 putative membrane protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPC_2121 putative exported protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPC_2119 putative exported protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPC_3876 outer membrane usher protein K12518 papC; outer membrane usher protein PapC
D YPC_4557 putative membrane protein K12518 papC; outer membrane usher protein PapC
D YPC_3875 fimbrial chaperone protein K12519 papD; chaperone protein PapD
D YPC_4076 secA; preprotein translocase subunit, ATPase K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D YPC_0227 secB; protein export chaperone K03071 secB; preprotein translocase subunit SecB
D YPC_3476 secD; SecYEG protein translocase auxillary subunit K03072 secD; preprotein translocase subunit SecD
D YPC_0499 secE; preprotein translocase membrane subunit K03073 secE; preprotein translocase subunit SecE
D YPC_3475 secF; SecYEG protein translocase auxillary subunit K03074 secF; preprotein translocase subunit SecF
D YPC_0564 secG; preprotein translocase membrane subunit K03075 secG; preprotein translocase subunit SecG
D YPC_4075 secM; regulator of secA translation K13301 secM; secretion monitor
D YPC_0168 secY; preprotein translocase membrane subunit K03076 secY; preprotein translocase subunit SecY
D YPC_3605 ffh; Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D YPC_0421 ftsY; membrane-binding signal recognition particle (SRP) receptor K03110 ftsY; fused signal recognition particle receptor
D YPC_3477 yajC; SecYEG protein translocase auxillary subunit K03210 yajC; preprotein translocase subunit YajC
D YPC_4623 yidC; cytoplasmic insertase into membrane protein, Sec system K03217 yidC; YidC/Oxa1 family membrane protein insertase
D YPC_0461 tatA; component of Sec-independent translocase K03116 tatA; sec-independent protein translocase protein TatA
D YPC_0462 tatB; component of Sec-independent translocase K03117 tatB; sec-independent protein translocase protein TatB
D YPC_0463 tatC; component of Sec-independent translocase K03118 tatC; sec-independent protein translocase protein TatC
D YPC_3278 tatE; component of Sec-independent translocase K03425 tatE; sec-independent protein translocase protein TatE
C 02042 Bacterial toxins [BR:yph02042]
D YPC_0665 putative exported protein K19298 subB; subtilase cytotoxin, subunit B
D YPC_4332 tccC1; insecticidal toxin complex protein K11021 tccC; insecticidal toxin complex protein TccC
D YPC_4333 tccC2; insecticidal toxin complex protein K11021 tccC; insecticidal toxin complex protein TccC
D YPC_1939 putative insecticidal toxin complex K11021 tccC; insecticidal toxin complex protein TccC
D YPC_2010 sepC; insecticial toxin K11021 tccC; insecticidal toxin complex protein TccC
D YPC_0594 ytfL; putative inner membrane protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D YPC_3607 yfjD; putative membrane protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D YPC_0028 hemolysin K11016 shlA; hemolysin
D YPC_2273 putative hemolysin K11016 shlA; hemolysin
D YPC_0029 Hemolysin activator protein precursor K11017 shlB; hemolysin activation/secretion protein
D YPC_2274 putative hemolysin activator protein K11017 shlB; hemolysin activation/secretion protein
D YPC_0907 yqfA; putative oxidoreductase, inner membrane subunit K11068 hlyIII; hemolysin III
D YPC_4869 ymt; murine toxin K11009 ymt; murine toxin
C 02022 Two-component system [BR:yph02022]
D YPC_3490 phoR; sensory histidine kinase in two-component regulatory system with PhoB K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D YPC_3491 phoB; osmolarity response regulator K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D YPC_1370 putative two-component response regulator K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D YPC_1735 phoQ; sensory histidine kinase in two-compoent regulatory system with PhoP K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D YPC_1736 phoP; DNA-binding response regulator in two-component regulatory system with PhoQ K07660 phoP; two-component system, OmpR family, response regulator PhoP
D YPC_0073 envZ; sensory histidine kinase in two-component regulatory system with OmpR K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D YPC_0072 ompR; DNA-binding response regulator in two-component regulatory system with EnvZ K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D YPC_1935 Sensor protein rstB K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3]
D YPC_1934 rstA; DNA-binding response regulator in two-component regulatory system with RstB K07661 rstA; two-component system, OmpR family, response regulator RstA
D YPC_0233 cpxA; sensory histidine kinase in two-component regulatory system with CpxR K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D YPC_0234 cpxR; DNA-binding response regulator in two-component regulatory system with CpxA K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D YPC_0913 creC; putative histidine kinase sensor K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3]
D YPC_0912 creB; putative response regulator K07663 creB; two-component system, OmpR family, catabolic regulation response regulator CreB
D YPC_1270 Envelope stress sensory histidine kinase BaeS K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3]
D YPC_1269 baeR; DNA-binding response regulator in two-component regulatory system with BaeS K07664 baeR; two-component system, OmpR family, response regulator BaeR
D YPC_0574 basS; sensory histidine kinase in two-component regulatory system with BasR K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3]
D YPC_0573 basR; two-component system response regulator K07771 basR; two-component system, OmpR family, response regulator BasR
D YPC_2321 putative two-component system sensor protein K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D YPC_2320 copR; transcriptional activator K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D YPC_3167 kdpD; sensory histidine kinase in two-component regulatory system with KdpE K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D YPC_3168 kdpE; DNA-binding response regulator in two-component regulatory system with KdpD K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D YPC_4267 arcB; aerobic respiration control sensor/response regulatory protein K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D YPC_4132 arcA; DNA-binding response regulator in two-component regulatory system with ArcB or CpxA K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA
D YPC_1383 putative two-component system sensor kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D YPC_1382 putative two-component system response regulator K02483 K02483; two-component system, OmpR family, response regulator
D YPC_1336 narP; nitrate/nitrite response regulator protein NarP K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP
D YPC_4522 uhpA; DNA-binding response regulator in two-component regulatory system wtih UhpB K07686 uhpA; two-component system, NarL family, uhpT operon response regulator UhpA
D YPC_2566 putative GerR-family transcriptional regulatory protein K20264 fusR; two-component system, NarL family, response regulator FusR
D YPC_2991 rcsC; hybrid sensory kinase in two-component regulatory system with RcsB and YojN K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D YPC_2988 putative regulator K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3]
D YPC_2989 putative 2-component sensor protein K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3]
D YPC_2990 rcsB; DNA-binding response regulator in two-component regulatory system with RcsC and YojN K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB
D YPC_3707 barA; hybrid sensory histidine kinase, in two-component regulatory system with UvrY K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D YPC_2397 uvrY; response regulator protein K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D YPC_4442 yehU; putative sensory kinase in two-component system with YehT K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D YPC_3592 yehT; putative response regulator in two-component system withYehU K02477 K02477; two-component system, LytTR family, response regulator
D YPC_4227 glnL; sensory histidine kinase in two-component regulatory system with GlnG K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D YPC_4228 glnG; nitrogen regulation protein K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D YPC_1237 Sensor protein of zinc sigma-54-dependenttwo-component system K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3]
D YPC_1238 Response regulator of zinc sigma-54-dependenttwo-component system K07713 zraR; two-component system, NtrC family, response regulator HydG
D YPC_3112 two-component system sensor kinase K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D YPC_3110 yfhA; putative DNA-binding response regulator in two-component system K07715 glrR; two-component system, NtrC family, response regulator GlrR
D YPC_1774 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D YPC_1787 cheY; chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D YPC_1786 cheB; protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D YPC_0754 two-component sensor/regulator K14978 ssrA; two-component system, LuxR family, secretion system sensor histidine kinase SsrA
D YPC_0755 putative two-component response regulator K14979 ssrB; two-component system, LuxR family, secretion system response regulator SsrB
D YPC_3860 Sigma-54 transcriptional regulatory protein K10943 flrC; two-component system, response regulator FlrC
D YPC_2136 rssB; response regulator of RpoS K02485 rssB; two-component system, response regulator
C 02035 Bacterial motility proteins [BR:yph02035]
D YPC_1774 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D YPC_1775 cheW; chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D YPC_1785 cheR; chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D YPC_1786 cheB; protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D YPC_1787 cheY; chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D YPC_1788 cheZ; chemotaxis protein CheZ K03414 cheZ; chemotaxis protein CheZ
D YPC_2975 tsr2; putative methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D YPC_1608 putative chemotactic transducer K03406 mcp; methyl-accepting chemotaxis protein
D YPC_1783 methyl-accepting chemotaxis protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D YPC_1021 putative methyl-accepting chemotaxis protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D YPC_4580 methyl-accepting chemotaxis protein II K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor
D YPC_1784 methyl-accepting chemotaxis protein K05877 tap; methyl-accepting chemotaxis protein IV, peptide sensor receptor
D YPC_1746 putative methyl-accepting chemotaxis protein K03776 aer; aerotaxis receptor
D YPC_3856 Flagellar assembly protein fliH K02411 fliH; flagellar assembly protein FliH
D YPC_2438 fliH; flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D YPC_3855 lfiI; lateral flagellar assembly ATPase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D YPC_2439 Flagellum-specific ATP synthase fliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D YPC_2440 fliJ; flagellar protein FliJ K02413 fliJ; flagellar protein FliJ
D YPC_2446 fliO; flagellar protein FliO K02418 fliO; flagellar protein FliO/FliZ
D YPC_3863 Flagellar biosynthesis protein fliP K02419 fliP; flagellar biosynthesis protein FliP
D YPC_2447 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D YPC_3864 Flagellar biosynthesis protein fliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D YPC_2448 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D YPC_3865 Flagellar biosynthesis protein fliR K02421 fliR; flagellar biosynthesis protein FliR
D YPC_2449 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D YPC_3867 Flagellar biosynthesis protein flhA K02400 flhA; flagellar biosynthesis protein FlhA
D YPC_3866 lfhB; lateral flagellar export and assembly protein K02401 flhB; flagellar biosynthesis protein FlhB
D YPC_2486 Flagellar biosynthesis protein flhB K02401 flhB; flagellar biosynthesis protein FlhB
D YPC_2483 flhE; flagellar protein FlhE precursor K03516 flhE; flagellar protein FlhE
D YPC_3857 Flagellar motor switch protein fliG K02410 fliG; flagellar motor switch protein FliG
D YPC_2437 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D YPC_3861 Flagellar motor switch protein fliM K02416 fliM; flagellar motor switch protein FliM
D YPC_2444 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D YPC_3862 Flagellar motor switch protein fliN K02417 fliN; flagellar motor switch protein FliN
D YPC_2445 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D YPC_3858 Flagellar M-ring protein fliF K02409 fliF; flagellar M-ring protein FliF
D YPC_2436 fliF; flagellar M-ring protein K02409 fliF; flagellar M-ring protein FliF
D YPC_3843 Flagellar P-ring protein flgI K02394 flgI; flagellar P-ring protein FlgI
D YPC_2468 flgI; flagellar P-ring protein precursor K02394 flgI; flagellar P-ring protein FlgI
D YPC_3851 Flagellar basal-body P-ring formation proteinflgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D YPC_2476 flgA; flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D YPC_3844 Flagellar L-ring protein flgH K02393 flgH; flagellar L-ring protein FlgH
D YPC_2469 flgH; flagellar L-ring protein precursor K02393 flgH; flagellar L-ring protein FlgH
D YPC_2443 fliL; flagellar protein FliL K02415 fliL; flagellar protein FliL
D YPC_3859 Flagellar hook-basal body complex protein fliE K02408 fliE; flagellar hook-basal body complex protein FliE
D YPC_2435 fliE; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D YPC_2441 fliK; flagellar hook-length control protein FliK K02414 fliK; flagellar hook-length control protein FliK
D YPC_3850 lfgB; Flagellar basal-body rod protein flgB K02387 flgB; flagellar basal-body rod protein FlgB
D YPC_2475 flgB; flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D YPC_3849 lfgC; Flagellar basal-body rod protein flgC K02388 flgC; flagellar basal-body rod protein FlgC
D YPC_2474 flgC; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D YPC_3848 lfgD; Flagellar basal-body rod modification proteinflgD K02389 flgD; flagellar basal-body rod modification protein FlgD
D YPC_2473 flgD; basal-body rod modification protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD
D YPC_3846 Flagellar basal-body rod protein flgF K02391 flgF; flagellar basal-body rod protein FlgF
D YPC_2471 Flagellar basal-body rod protein flgF K02391 flgF; flagellar basal-body rod protein FlgF
D YPC_3845 Flagellar basal-body rod protein flgG K02392 flgG; flagellar basal-body rod protein FlgG
D YPC_2470 Flagellar basal-body rod protein flgG K02392 flgG; flagellar basal-body rod protein FlgG
D YPC_3842 peptidoglycan hydrolase K02395 flgJ; peptidoglycan hydrolase FlgJ
D YPC_2467 flgJ; flagellar protein FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ
D YPC_3847 lfgE; Flagellar hook protein flgE K02390 flgE; flagellar hook protein FlgE
D YPC_2472 flgE; flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE
D YPC_3841 Flagellar hook-associated protein flgK K02396 flgK; flagellar hook-associated protein 1
D YPC_2462 flgK; flagellar hook-associated protein 1 K02396 flgK; flagellar hook-associated protein 1
D YPC_3840 lfgL; lateral flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D YPC_2461 flgL; flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D YPC_3853 hypothetical protein K02399 flgN; flagellar biosynthesis protein FlgN
D YPC_2478 flgN; flagella synthesis protein FlgN K02399 flgN; flagellar biosynthesis protein FlgN
D YPC_3835 lafA; lateral flagellin K02406 fliC; flagellin
D YPC_2424 fliC; thermoregulated motility protein K02406 fliC; flagellin
D YPC_2425 fliD; flagellar hook-associated protein 2 K02407 fliD; flagellar hook-associated protein 2
D YPC_2426 fliS; flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D YPC_2427 fliT; Flagellar biosynthesis protein fliT K02423 fliT; flagellar protein FliT
D YPC_1771 Flagellar transcriptional activator flhC K02402 flhC; flagellar transcriptional activator FlhC
D YPC_2422 fliA; RNA polymerase sigma factor RpoD K02405 fliA; RNA polymerase sigma factor FliA
D YPC_1772 motA; chemotaxis MotA protein K02556 motA; chemotaxis protein MotA
D YPC_1773 motB; chemotaxis MotB protein K02557 motB; chemotaxis protein MotB
D YPC_3860 Sigma-54 transcriptional regulatory protein K10943 flrC; two-component system, response regulator FlrC
D YPC_2418 fliY; cystine transporter subunit; periplasmic-binding component of ABC superfamily K02424 tcyA; L-cystine transport system substrate-binding protein
D YPC_2420 fliZ; putative regulator of FliA activity K02425 fliZ; regulator of sigma S factor FliZ
D YPC_3852 putative flagellar regulatory protein K02398 flgM; negative regulator of flagellin synthesis FlgM
D YPC_2477 flgM; negative regulator of flagellin synthesis K02398 flgM; negative regulator of flagellin synthesis FlgM
D YPC_0860 yggR; putative transporter K02669 pilT; twitching motility protein PilT
D YPC_3071 putative fimbrial biogenesis protein K02656 pilF; type IV pilus assembly protein PilF
D YPC_3879 Type IV prepilin peptidase TadV/CpaA K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D YPC_3880 Flp pilus assembly protein RcpC/CpaB K02279 cpaB; pilus assembly protein CpaB
D YPC_3881 Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly K02280 cpaC; pilus assembly protein CpaC
D YPC_3883 Type II/IV secretion system ATPase TadZ/CpaE,associated with Flp pilus assembly K02282 cpaE; pilus assembly protein CpaE
D YPC_3884 Type II/IV secretion system ATP hydrolaseTadA/VirB11/CpaF, TadA subfamily K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D YPC_0344 putative fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D YPC_1453 frimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D YPC_2107 putative fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D YPC_2110 putative fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D YPC_0343 putative fimbrial chaperone K07346 fimC; fimbrial chaperone protein
D YPC_2106 putative chaperone protein K07346 fimC; fimbrial chaperone protein
D YPC_2122 putative chaperone protein K07346 fimC; fimbrial chaperone protein
D YPC_0342 putative outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPC_4839 caf1A; putative F1 capsule anchoring protein K07347 fimD; outer membrane usher protein
D YPC_1455 putative outer membrane fimbrial usher porinprecursor K07347 fimD; outer membrane usher protein
D YPC_2108 putative outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPC_2123 putative outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPC_2887 psaC; outer membrane usher protein PsaC precursor K07347 fimD; outer membrane usher protein
D YPC_2120 putative exported protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPC_2125 putative membrane protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPC_2121 putative exported protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPC_2119 putative exported protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:yph04812]
D YPC_4342 mreB; cell wall structural complex MreBCD, actin-like component MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D YPC_4072 ftsZ; GTP-binding tubulin-like cell division protein K03531 ftsZ; cell division protein FtsZ
D YPC_4071 ftsA; cell division protein K03590 ftsA; cell division protein FtsA
D YPC_2234 minC; cell division inhibitor K03610 minC; septum site-determining protein MinC
D YPC_2235 minD; septum site-determining protein K03609 minD; septum site-determining protein MinD
D YPC_2236 minE; cell division topological specificity factor K03608 minE; cell division topological specificity factor
D YPC_4861 parA; putative partitioning protein A K03496 parA; chromosome partitioning protein
D YPC_4849 putative DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D YPC_4860 parB; putative partitioning protein B K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:yph04147]
D YPC_3399 htpG; molecular chaperone HSP90 family K04079 HSP90A; molecular chaperone HtpG
D YPC_3700 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D YPC_2157 gapA; glyceraldehyde-3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D YPC_0881 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D YPC_2025 pykF; pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40]
D YPC_2250 pykA; pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40]
D YPC_0105 ppiA; peptidyl-prolyl cis-trans isomerase A rotamase A K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D YPC_3481 ahpC; putative alkyl hydroperoxide reductase subunit c K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24]
D YPC_0650 groL; Heat shock protein 60 family chaperone GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D YPC_4118 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D YPC_0033 pgi; glucosephosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D YPC_3058 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D YPC_0141 tufA; Translation elongation factor Tu K02358 tuf; elongation factor Tu
D YPC_0498 Translation elongation factor Tu K02358 tuf; elongation factor Tu
D YPC_1711 hinT; purine nucleoside phosphoramidase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D YPC_1891 yfeH; putative inner membrane protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D YPC_4050 putative AMP-binding enzyme-family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D YPC_2238 fadD; acyl-CoA synthetase, long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D YPC_3398 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D YPC_4529 putative phosphoribosyl transferase protein K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D YPC_0291 argH; putative argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D YPC_2577 argG; argininosuccinate synthetase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D YPC_3018 putative pyridoxal-dependent decarboxylase K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105]
D YPC_0587 fbp; fructose-1,6-bisphosphatase I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D YPC_1192 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D YPC_4441 glgB; 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D YPC_0252 Glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D YPC_3628 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D YPC_4226 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D YPC_0469 hemB; delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D YPC_1922 phoA; alkaline phosphatase precursor K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D YPC_2906 putative D-isomer specific 2-hydroxyacid dehydrogenase family protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YPC_0889 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YPC_0525 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D YPC_0298 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPC_3752 lpd; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPC_2248 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D YPC_0247 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D YPC_1188 gpmA; phosphoglyceromutase 1 K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
C 02048 Prokaryotic defense system [BR:yph02048]
D YPC_1659 hypothetical protein K15342 cas1; CRISP-associated protein Cas1
D YPC_1660 hypothetical protein K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D YPC_1661 hypothetical protein K19127 csy1; CRISPR-associated protein Csy1
D YPC_1662 hypothetical protein K19128 csy2; CRISPR-associated protein Csy2
D YPC_1663 hypothetical protein K19129 csy3; CRISPR-associated protein Csy3
D YPC_1664 hypothetical protein K19130 csy4; CRISPR-associated endonuclease Csy4 [EC:3.1.-.-]
D YPC_0090 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D YPC_2223 putative methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D YPC_4855 putative DNA methylase K07319 yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D YPC_4219 hypothetical protein K07452 mcrB; 5-methylcytosine-specific restriction enzyme B [EC:3.1.21.-]
D YPC_4218 hypothetical protein K19147 mcrC; 5-methylcytosine-specific restriction enzyme subunit McrC
D YPC_4407 hypothetical protein K19048 symE; toxic protein SymE
D YPC_0925 hypothetical protein K06218 relE; mRNA interferase RelE/StbE
D YPC_4538 hypothetical protein K06218 relE; mRNA interferase RelE/StbE
D YPC_4384 putative DNA-damage-inducible protein K07473 dinJ; DNA-damage-inducible protein J
D YPC_1422 hypothetical protein K18843 hicB; antitoxin HicB
D YPC_3419 hha; hemolysin expression-modulating protein K05839 hha; haemolysin expression modulating protein
D YPC_3418 ybaJ; hypothetical protein K19162 tomB; hha toxicity modulator TomB
D YPC_1981 pspC; DNA-binding transcriptional activator K03973 pspC; phage shock protein C
D YPC_1982 pspB; DNA-binding transcriptional regulator of psp operon K03970 pspB; phage shock protein B
D YPC_2433 hypothetical protein K07341 doc; death on curing protein
D YPC_0927 hypothetical protein K13651 mqsR; motility quorum-sensing regulator / GCU-specific mRNA interferase toxin
D YPC_0928 hypothetical protein K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA
D YPC_3784 yjgK; conserved protein K19334 tabA; biofilm protein TabA
D YPC_1574 hypothetical protein K19334 tabA; biofilm protein TabA
D YPC_1683 putative cytoplasmic protein K12148 bssS; biofilm regulator BssS
D YPC_4072 ftsZ; GTP-binding tubulin-like cell division protein K03531 ftsZ; cell division protein FtsZ
D YPC_4342 mreB; cell wall structural complex MreBCD, actin-like component MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D YPC_3903 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D YPC_3906 parE; topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D YPC_1405 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D YPC_0911 ygfX; hypothetical protein K19168 cptA; toxin CptA
D YPC_0910 ygfY; conserved protein K09159 cptB; antitoxin CptB
D YPC_3092 iscS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YPC_2174 putative aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:yph01504]
D YPC_4564 mdfA; multidrug translocase K08160 mdfA; MFS transporter, DHA1 family, multidrug/chloramphenicol efflux transport protein
D YPC_2321 putative two-component system sensor protein K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D YPC_2320 copR; transcriptional activator K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D YPC_1735 phoQ; sensory histidine kinase in two-compoent regulatory system with PhoP K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D YPC_1736 phoP; DNA-binding response regulator in two-component regulatory system with PhoQ K07660 phoP; two-component system, OmpR family, response regulator PhoP
D YPC_3413 acrA; multidrug efflux protein K03585 acrA; membrane fusion protein, multidrug efflux system
D YPC_3821 multidrug efflux protein K18138 acrB; multidrug efflux pump
D YPC_3414 acrB; multidrug efflux protein K18138 acrB; multidrug efflux pump
D YPC_0549 putative integral membrane efflux protein K18138 acrB; multidrug efflux pump
D YPC_3820 ibeB; putative outer membrane efflux lipoprotein K18139 oprM; outer membrane protein, multidrug efflux system
D YPC_3365 cueR; copper responsive transcription regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D YPC_3912 tolC; transport channel K12340 tolC; outer membrane protein
D YPC_2755 ompF; putative outer membrane porin C protein K09476 ompF; outer membrane pore protein F
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins [BR:yph00536]
D YPC_3981 putative adhesin/hemolysin precursor K15125 fhaB; filamentous hemagglutinin
D YPC_1637 putative adhesin/hemolysin precursor K15125 fhaB; filamentous hemagglutinin
D YPC_1636 putative hemolysin K15125 fhaB; filamentous hemagglutinin
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:yph00537]
D YPC_1922 phoA; alkaline phosphatase precursor K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins [BR:yph03200]
D YPC_2213 rzpR; putative prophage endopeptidase K14744 rzpD; prophage endopeptidase [EC:3.4.-.-]
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:yph03100]
D YPC_1401 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YPC_1402 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YPC_0484 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YPC_0529 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YPC_3575 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YPC_1481 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPC_3616 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPC_3617 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPC_3615 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPC_0369 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPC_3347 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPC_2550 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D YPC_2569 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D YPC_0313 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D YPC_1120 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D YPC_1129 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D YPC_2393 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D YPC_3248 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D YPC_3249 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D YPC_3251 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D YPC_0014 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D YPC_1117 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D YPC_4247 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D YPC_0309 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D YPC_0496 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPC_0921 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPC_0634 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPC_2394 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPC_0635 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPC_0370 tRNA-His K14226 tRNA-His; tRNA His
D YPC_0483 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D YPC_0528 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D YPC_3576 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D YPC_3247 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPC_2392 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPC_0371 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPC_4171 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPC_0563 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPC_3775 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPC_1183 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPC_1181 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPC_1408 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPC_1182 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPC_2403 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPC_3246 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPC_3250 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPC_0562 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPC_1056 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPC_1055 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPC_3936 tRNA-Ile K14230 tRNA-Met; tRNA Met
D YPC_0662 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D YPC_0837 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D YPC_2941 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D YPC_0372 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D YPC_4518 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D YPC_2981 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YPC_2711 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YPC_3618 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YPC_2287 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YPC_2295 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YPC_0017 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YPC_0497 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YPC_0494 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YPC_2980 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YPC_0314 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D YPC_0495 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D YPC_2140 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D YPC_1406 tRNA-Val K14237 tRNA-Val; tRNA Val
D YPC_1407 tRNA-Val K14237 tRNA-Val; tRNA Val
D YPC_2024 tRNA-Val K14237 tRNA-Val; tRNA Val
D YPC_2023 tRNA-Val K14237 tRNA-Val; tRNA Val
D YPC_4546 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D YPC_0013 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPC_0527 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPC_1116 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPC_4248 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPC_0308 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPC_3577 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPC_0482 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPC_0015 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPC_4246 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPC_3574 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPC_1118 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPC_0530 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPC_0485 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPC_0310 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPC_0311 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPC_1119 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPC_3573 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPC_4245 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPC_0486 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPC_0531 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPC_0016 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPC_0018 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPC_3420 ffs; 4.5S RNA K01983 ffs; SRP RNA
D YPC_1153 ssrA; tmRNA K15035 ssrA; transfer-messenger RNA
D YPC_3368 sroB; small RNA K18503 chiX; small regulatory RNA ChiX
D YPC_4266 ryhA; small RNA K18504 arcZ; small regulatory RNA ArcZ
D YPC_3115 glmY; glmS activator sRNA K15841 glmY; small regulatory RNA GlmY
D YPC_4461 ryhB; regulatory antisense RNA K18507 ryhB; small regulatory RNA RyhB
D YPC_2860 rybB; small RNA K18508 rybB; small regulatory RNA RybB
D YPC_3611 micA; MicA regulatory antisense RNA K18511 micA; small regulatory RNA MicA
D YPC_4231 csrC; CsrC carbon storage regulatory RNA K18516 csrC; small regulatory RNA CsrC
D YPC_2042 rprA; RprA regulatory RNA K18518 rprA; small regulatory RNA RprA
D YPC_1266 ryeE; small RNA K18520 cyaR; small regulatory RNA CyaR
D YPC_1062 gcvB; GcvB regulatory RNA K18521 gcvB; small regulatory RNA GcvB
D YPC_1030 omrB; OmrB OmpR-regulated sRNA K18522 omrA; small regulatory RNA OmrA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D YPC_1576 idnO; gluconate 5-dehydrogenase K00046 idnO; gluconate 5-dehydrogenase [EC:1.1.1.69]
D YPC_3328 putative aldo/keto reductase K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346]
D YPC_3898 dkgA; 2,5-diketo-D-gluconate reductase A K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346]
D YPC_1121 putative aldo/keto reductase K06222 dkgB; 2,5-diketo-D-gluconate reductase B [EC:1.1.1.346]
D YPC_1867 NAD-dependent epimerase/dehydratase K22025 denD; D-erythronate 2-dehydrogenase [EC:1.1.1.410]
D YPC_2594 ybdH; putative oxidoreductase K08317 hcxA; hydroxycarboxylate dehydrogenase A [EC:1.1.1.-]
D YPC_1414 putative ion channel protein K19265 gpr; L-glyceraldehyde 3-phosphate reductase [EC:1.1.1.-]
D YPC_1623 gutB; putative zinc-binding dehydrogenase K23271 eltD; erythritol/L-threitol dehydrogenase [EC:1.1.1.-]
D YPC_3670 putative Zinc-binding dehydrogenase K23271 eltD; erythritol/L-threitol dehydrogenase [EC:1.1.1.-]
D YPC_0697 putative oxidoreductase K26080 E1.1.3.29; N-acylhexosamine oxidase [EC:1.1.3.29]
D YPC_1665 putative NAD(P)H-dependent xylose reductase K23107 yajO; 1-deoxyxylulose-5-phosphate synthase [EC:1.1.-.-]
D YPC_3991 fadH; 2,4-dienoyl-CoA reductase K00219 fadH; 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34]
D YPC_1681 solA; putative sarcosine oxidase K02846 solA; N-methyl-L-tryptophan oxidase [EC:1.5.3.-]
D YPC_0685 qor; quinone oxidoreductase, NADPH-dependent K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D YPC_1760 putative Zinc-binding dehydrogenase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D YPC_3904 mdaB; putative modulator of drug activity K03923 mdaB; NADPH dehydrogenase (quinone) [EC:1.6.5.10]
D YPC_1952 azoR; NADH-azoreductase, FMN-dependent K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17]
D YPC_0593 msrA; methionine sulfoxide reductase A K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D YPC_2156 methionine sulfoxide reductase B K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D YPC_4373 yghU; putative glutathionylspermidine-utilizing glutathione transferase K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-]
D YPC_4253 putative glutathione S-transferase K07393 ECM4; glutathionyl-hydroquinone reductase [EC:1.8.5.7]
D YPC_4345 yedY; putative reductase K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-]
D YPC_3637 cybB; cytochrome b561 K12262 cybB; superoxide oxidase [EC:1.10.3.17]
D YPC_3660 putative cytochrome C peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5]
D YPC_1307 bcp; thiol peroxidase, thioredoxin-dependent K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D YPC_1972 tpx; lipid hydroperoxide peroxidase K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D YPC_1354 yfeX; conserved protein K07223 yfeX; porphyrinogen peroxidase [EC:1.11.1.-]
D YPC_4460 yhhW; hypothetical protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D YPC_2164 hypothetical protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D YPC_3106 hmp; bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2 K05916 hmp; nitric oxide dioxygenase [EC:1.14.12.17]
D YPC_1634 putative dioxygenase beta subunit K22444 cntB; carnitine monooxygenase subunit [EC:1.14.13.239]
D YPC_2495 Cytoplasmic ferritin K02217 ftnA; ferritin [EC:1.16.3.2]
D YPC_3739 cueO; multicopper oxidase K14588 cueO; cuproxidase [EC:1.16.3.4]
D YPC_0250 fpr; ferredoxin-NADP reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D YPC_1300 yfgD; putative oxidoreductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1]
D YPC_3792 nrdG; anaerobic ribonucleotide reductase activating protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]
D YPC_2791 pflA; pyruvate formate lyase activating enzyme 1 K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D YPC_2825 hcr; HCP oxidoreductase, NADH-dependent K11933 hcr; NADH oxidoreductase Hcr [EC:1.-.-.-]
D YPC_3676 pcm; L-isoaspartate protein carboxylmethyltransferase type II K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D YPC_2020 cfa; cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D YPC_0718 putative coproporphyrinogen III oxidase K21936 chuW; anaerobilin synthase [EC:2.1.1.342]
D YPC_3258 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D YPC_3815 yhbS; putative acyltransferase with acyl-CoA N-acyltransferase domain K03824 yhbS; putative acetyltransferase [EC:2.3.1.-]
D YPC_4595 putative acetyltransferase K03826 yiaC; putative acetyltransferase [EC:2.3.1.-]
D YPC_3781 putative acetyltransferase K03828 yjgM; putative acetyltransferase [EC:2.3.1.-]
D YPC_0346 putative exported protein K22757 QCT; glutaminyl-peptide cyclotransferase [EC:2.3.2.5]
D YPC_3969 sugar phosphorylase K21298 E2.4.1.333; 1,2-beta-oligoglucan phosphorylase [EC:2.4.1.333]
D YPC_1654 hypothetical protein K20885 K20885; beta-1,2-mannobiose phosphorylase / 1,2-beta-oligomannan phosphorylase [EC:2.4.1.339 2.4.1.340]
D YPC_3569 yfiP; conserved protein K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25]
D YPC_1043 lgt; phosphatidylglycerol-prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D YPC_3527 apbE; putative thiamine biosynthesis lipoprotein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D YPC_2969 hypothetical protein K21948 otnK; 3-dehydrotetronate 4-kinase [EC:2.7.1.217]
D YPC_2044 ydiA; conserved protein K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33]
D YPC_3923 glnE; multifunctional deadenylyltransferase and adenylyltransferase for glutamine synthetase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D YPC_2046 Selenoprotein O K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108]
D YPC_2047 Selenoprotein O K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108]
D YPC_0024 aceK; isocitrate dehydrogenase kinase/phosphatase K00906 aceK; isocitrate dehydrogenase kinase/phosphatase [EC:2.7.11.5 3.1.3.-]
D YPC_1174 ybgC; thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D YPC_1838 yciV; conserved protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D YPC_1499 sixA; phosphohistidine phosphatase K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D YPC_2924 putative membrane protein precursor K26148 K26148; c-di-GMP phosphodiesterase [EC:3.1.4.52]
D YPC_4505 hmsP; diguanylate phosphodiesterase K26149 K26149; c-di-GMP phosphodiesterase [EC:3.1.4.52]
D YPC_1326 putative sulfatase K01138 K01138; uncharacterized sulfatase [EC:3.1.6.-]
D YPC_0976 putative sulfatase K01138 K01138; uncharacterized sulfatase [EC:3.1.6.-]
D YPC_0991 putative sulfatase K01138 K01138; uncharacterized sulfatase [EC:3.1.6.-]
D YPC_0869 Endonuclease I precursor K01150 endA; deoxyribonuclease I [EC:3.1.21.1]
D YPC_0464 Deoxyribonuclease TatD K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D YPC_1706 ycfH; putative metallodependent hydrolase K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D YPC_3225 ybfF; putative esterase/lipase ybfF K01175 ybfF; esterase [EC:3.1.-.-]
D YPC_3514 frsA; fermentation/respiration switch protein K11750 frsA; esterase FrsA [EC:3.1.-.-]
D YPC_4507 putative endoglucanase K20542 bcsZ; endoglucanase [EC:3.2.1.4]
D YPC_2214 putative phage lysozyme K01185 E3.2.1.17; lysozyme [EC:3.2.1.17]
D YPC_0960 ganA; endo-1,4-beta-galactanase K01224 E3.2.1.89; arabinogalactan endo-1,4-beta-galactosidase [EC:3.2.1.89]
D YPC_1791 putative N-acetylmuramoyl-L-alanine amidase K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D YPC_0181 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D YPC_3176 Cellobiose phosphotransferase system YdjC-likeprotein K03478 chbG; chitin disaccharide deacetylase [EC:3.5.1.105]
D YPC_2503 hypothetical protein K09900 E3.5.1.135; N4-acetylcytidine amidohydrolase [EC:3.5.1.135]
D YPC_4304 yjgF; ketoacid-binding protein K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D YPC_3925 Adenylate cyclase K18446 ygiF; triphosphatase [EC:3.6.1.25]
D YPC_3431 putative haloacid dehalogenase-like hydrolase K11938 cof; HMP-PP phosphatase [EC:3.6.1.-]
D YPC_1343 nudK; Nudix hydrolase family protein YffH K12945 nudK; GDP-mannose pyrophosphatase NudK [EC:3.6.1.-]
D YPC_1690 yceF; hypothetical protein K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-]
D YPC_0005 ravA; AAA+ family ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D YPC_2968 putative class II aldolase-family protein K22130 otnC; 3-dehydro-4-phosphotetronate decarboxylase [EC:4.1.1.104]
D YPC_1862 mipB; putative transaldolase K08313 fsaA; fructose-6-phosphate aldolase 1 [EC:4.1.2.-]
D YPC_0631 yjeF; putative carbohydrate kinase K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D YPC_0996 hypothetical protein K08961 K08961; chondroitin-sulfate-ABC endolyase/exolyase [EC:4.2.2.20 4.2.2.21]
D YPC_1060 csdA; cysteine sulfinate desulfinase K01766 csdA; cysteine sulfinate desulfinase [EC:4.4.1.-]
D YPC_2405 putative exported protein K17948 nanM; N-acetylneuraminate epimerase [EC:5.1.3.24]
D YPC_0678 rhaM; L-rhamnose mutarotase K03534 rhaM; L-rhamnose mutarotase [EC:5.1.3.32]
D YPC_2966 hypothetical protein K22131 otnI; 2-dehydrotetronate isomerase [EC:5.3.1.35]
D YPC_0586 mpl; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45]
D YPC_1871 rsxD; putative inner membrane oxidoreductase K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2]
D YPC_1873 rsxC; inner membrane iron-sulfur protein in SoxR-reducing complex K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2]
D YPC_1875 rsxB; inner membrane iron-sulfur protein in SoxR-reducing complex K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
D YPC_3533 nqrA; NADH-ubiquinone oxidoreductase subunit A K00346 nqrA; Na+-transporting NADH:ubiquinone oxidoreductase subunit A [EC:7.2.1.1]
D YPC_3532 nqrB; NADH-ubiquinone oxidoreductase subunit B K00347 nqrB; Na+-transporting NADH:ubiquinone oxidoreductase subunit B [EC:7.2.1.1]
D YPC_3531 nqrC; Na+-translocating NADH-quinone reductase subunit C K00348 nqrC; Na+-transporting NADH:ubiquinone oxidoreductase subunit C [EC:7.2.1.1]
D YPC_3530 nqrD; Na+-translocating NADH-quinone reductase subunit D K00349 nqrD; Na+-transporting NADH:ubiquinone oxidoreductase subunit D [EC:7.2.1.1]
D YPC_3529 nqrE; Na+-translocating NADH-quinone reductase subunit E K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1]
D YPC_3528 nqrF; Na(+)-translocating NADH-quinone reductase subunit F K00351 nqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:7.2.1.1]
D YPC_0414 Lead; Copper-translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
D YPC_1768 Mg(2+) transport ATPase protein B K01531 mgtA; P-type Mg2+ transporter [EC:7.2.2.14]
C 99981 Carbohydrate metabolism
D YPC_3725 sfsA; putative DNA-binding transcriptional regulator K06206 sfsA; sugar fermentation stimulation protein A
C 99982 Energy metabolism
D YPC_4577 fdhD; formate dehydrogenase formation protein K02379 fdhD; FdhD protein
D YPC_3087 fdx; CDP-6-deoxy-delta-3,4-glucoseen reductase K04755 fdx; ferredoxin, 2Fe-2S
D YPC_2997 yfaE; Ferredoxin-like protein K11107 yfaE; ferredoxin
D YPC_1876 rsxA; inner membrane subunit of SoxR-reducing complex K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A
D YPC_0659 hydN; anaerobic dimethyl sulfoxide reductase chain B K05796 hydN; electron transport protein HydN
D YPC_0001 mioC; FMN-binding protein MioC K06205 mioC; MioC protein
D YPC_0915 fldB; flavodoxin 2 K03840 fldB; flavodoxin II
D YPC_3091 iscU; Iron-sulfur cluster assembly scaffold proteinIscU K04488 iscU; nitrogen fixation protein NifU and related proteins
D YPC_3636 putative cytochrome B562 K15536 cybC; soluble cytochrome b562
D YPC_4311 putative cytochrome K15536 cybC; soluble cytochrome b562
D YPC_1338 napD; Periplasmic nitrate reductase component NapD K02570 napD; periplasmic nitrate reductase NapD
D YPC_1337 napF; ferredoxin-type protein NapF K02572 napF; ferredoxin-type protein NapF
D YPC_3229 fldA; flavodoxin 1 K03839 fldA; flavodoxin I
D YPC_1342 napC; cytochrome C-type protein NapC K02569 napC; cytochrome c-type protein NapC
C 99983 Lipid metabolism
D YPC_0615 aidB; putative acyl-CoA dehydrogenase K09456 aidB; putative acyl-CoA dehydrogenase
C 99984 Nucleotide metabolism
D YPC_3209 nrdI; protein that stimulates ribonucleotide reduction K03647 nrdI; protein involved in ribonucleotide reduction
C 99985 Amino acid metabolism
D YPC_1394 cysZ; putative inner membrane protein K06203 cysZ; CysZ protein
D YPC_1100 yaeR; putative lyase K08234 yaeR; glyoxylase I family protein
D YPC_1970 mpaA; murein peptide amidase A K14054 mpaA; murein peptide amidase A
D YPC_0859 yggS; putative enzyme K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
D YPC_1854 yciS; conserved inner membrane protein K08992 lapA; lipopolysaccharide assembly protein A
D YPC_1855 yciM; conserved protein K19804 lapB; lipopolysaccharide assembly protein B
D YPC_2790 hypothetical protein K07270 K07270; glycosyl transferase, family 25
C 99987 Cofactor metabolism
D YPC_0376 hemY; putative protoheme IX synthesis protein K02498 hemY; HemY protein
D YPC_0460 ubiB; 2-octaprenylphenol hydroxylase of ubiquinone biosynthetic pathway K03688 ubiB; ubiquinone biosynthesis protein
D YPC_0459 yigP; conserved protein K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ
D YPC_3919 yqiC; conserved protein K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK
D YPC_3816 yhbT; putative lipid carrier protein K24843 ubiT; O2-independent ubiquinone biosynthesis accessory factor UbiT
D YPC_4243 mobB; molybdopterin-guanine dinucleotide biosynthesis protein B K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein
D YPC_0539 putative integral membrane efflux protein K12942 abgT; aminobenzoyl-glutamate transport protein
C 99988 Secondary metabolism
D YPC_3901 sufI; putative cell division protein precursor K04753 sufI; suppressor of ftsI
C 99999 Others
D YPC_4083 yqjF; putative quinol oxidase subunit K15977 K15977; putative oxidoreductase
D YPC_3570 yfiQ; putative acyl-CoA synthetase: NAD(P)-binding subunit and ATP-binding subunit K09181 yfiQ; acetyltransferase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D YPC_4315 putative ribonuclease inhibitor K03623 yhcO; ribonuclease inhibitor
D YPC_4367 major cold shock protein Cspa1 K03704 cspA; cold shock protein
D YPC_4368 major cold shock protein Cspa2 K03704 cspA; cold shock protein
D YPC_3203 cold shock protein K03704 cspA; cold shock protein
D YPC_1762 cold shock protein K03704 cspA; cold shock protein
D YPC_2772 Cold shock-like protein K03704 cspA; cold shock protein
D YPC_2535 cspC; stress protein, member of the CspA-family K03704 cspA; cold shock protein
D YPC_2816 cspD; cold shock protein K03704 cspA; cold shock protein
D YPC_0515 rsd; regulator of sigma D K07740 rsd; regulator of sigma D
D YPC_3426 glnK; nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB K04752 glnK; nitrogen regulatory protein P-II 2
D YPC_0070 yhgF; 30S ribosomal protein S1 K06959 tex; protein Tex
C 99974 Translation
C 99975 Protein processing
D YPC_1959 hslJ; putative heat shock protein K03668 hslJ; heat shock protein HslJ
D YPC_2814 clpS; regulatory protein for ClpA substrate specificity K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D YPC_3442 tig; trigger factor K03545 tig; trigger factor
D YPC_4346 yedZ; conserved inner membrane protein K17247 msrQ; methionine sulfoxide reductase heme-binding subunit
D YPC_4572 fdhE; formate dehydrogenase formation protein K02380 fdhE; FdhE protein
D YPC_3192 ureE; urease accessory protein K03187 ureE; urease accessory protein
D YPC_3191 ureF; urease accessory protein K03188 ureF; urease accessory protein
D YPC_3190 ureG; urease accessory protein K03189 ureG; urease accessory protein
D YPC_1154 smpB; trans-translation protein K03664 smpB; SsrA-binding protein
D YPC_3208 nrdH; glutaredoxin-like protein K06191 nrdH; glutaredoxin-like protein NrdH
D YPC_0321 putative magnesium chelatase family protein K07391 comM; magnesium chelatase family protein
D YPC_1022 hypothetical protein K07396 K07396; putative protein-disulfide isomerase
D YPC_3949 hypothetical protein K07396 K07396; putative protein-disulfide isomerase
D YPC_0112 yhfA; conserved protein K07397 yhfA; putative redox protein
D YPC_0062 gntY; putative DNA uptake protein K07400 nfuA; Fe/S biogenesis protein NfuA
D YPC_0750 putative type III secretion apparatus K18984 ssaE; secretion system chaperone SsaE
C 99976 Replication and repair
D YPC_3421 putative 6-O-methylguanine DNA methyltransferase family protein K07443 ybaZ; methylated-DNA-protein-cysteine methyltransferase related protein
D YPC_1066 DNA polymerase I K01146 xni; protein Xni
D YPC_0209 yicR; protein associated with replication fork, possible DNA repair protein K03630 radC; DNA repair protein RadC
D YPC_0457 rmuC; putative recombination limiting protein K09760 rmuC; DNA recombination protein RmuC
D YPC_2822 ybjD; conserved protein with nucleoside triphosphate hydrolase domain K07459 ybjD; putative ATP-dependent endonuclease of the OLD family
D YPC_4260 hypothetical protein K07460 yraN; putative endonuclease
D YPC_3814 yhbQ; putative endonuclease K07461 K07461; putative endonuclease
D YPC_0182 Rossmann fold nucleotide-binding protein Smfpossibly involved in DNA uptake K04096 smf; DNA processing protein
D YPC_3939 hypothetical protein K07474 xtmA; phage terminase small subunit
D YPC_3940 hypothetical protein K07474 xtmA; phage terminase small subunit
D YPC_2797 ycaJ; recombination protein K07478 ycaJ; putative ATPase
D YPC_0184 putative DNA-binding protein K07479 yrdD; putative DNA topoisomerase
D YPC_0929 putative primase K06919 K06919; putative DNA primase/helicase
D YPC_0666 Insertion element iso-IS1n protein insB K07480 insB; insertion element IS1 protein InsB
D YPC_0834 insB; insertion sequence protein K07480 insB; insertion element IS1 protein InsB
D YPC_0829 Insertion sequence protein K07480 insB; insertion element IS1 protein InsB
D YPC_4612 insertion element IS1661 DNA-binding protein K07483 K07483; transposase
D YPC_3834 insertion element IS1661 DNA-binding protein K07483 K07483; transposase
D YPC_4752 putative transposase remname K07483 K07483; transposase
D YPC_0555 insertion element IS1661 DNA-binding protein K07483 K07483; transposase
D YPC_4674 transposase K07483 K07483; transposase
D YPC_0053 insertion element IS1661 DNA-binding protein K07483 K07483; transposase
D YPC_0285 insertion element IS1661 DNA-binding protein K07483 K07483; transposase
D YPC_0796 transposase K07483 K07483; transposase
D YPC_4750 transposase K07483 K07483; transposase
D YPC_4562 insertion element IS1661 DNA-binding protein K07483 K07483; transposase
D YPC_4430 insertion element IS1661 DNA-binding protein K07483 K07483; transposase
D YPC_4735 hypothetical protein K07484 K07484; transposase
D YPC_4874 transposase K07486 K07486; transposase
D YPC_0828 insertion sequence protein K07489 K07489; transposase
D YPC_0833 insertion sequence protein K07489 K07489; transposase
D YPC_0815 insertion element protein K07489 K07489; transposase
D YPC_0144 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_2936 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_2982 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_3043 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_3054 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_3113 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_3126 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_3097 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_0603 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_0879 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_1298 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_1312 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_1150 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_0375 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_0992 putative transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_1223 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_0427 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_0477 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_3350 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_3647 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_3877 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_4098 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_4107 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_1071 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_4803 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_3769 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_3998 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_4234 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_4236 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_4369 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_4474 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_3305 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_3584 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_3597 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_3608 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_4046 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_4054 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_4280 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_3463 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_3473 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_3750 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_4517 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_0507 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_3236 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_3507 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_3520 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_1077 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_0257 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_1937 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_1974 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_1985 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_1700 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_1709 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_2028 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_1389 putative transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_1403 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_2736 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_2761 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_2728 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_2631 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_2810 transposase K07491 rayT; REP-associated tyrosine transposase
D YPC_0345 putative transposase K07493 K07493; putative transposase
D YPC_1258 putative transposase K07493 K07493; putative transposase
D YPC_1539 putative transposase K07493 K07493; putative transposase
D YPC_1682 putative transposase K07493 K07493; putative transposase
D YPC_1687 putative transposase K07493 K07493; putative transposase
D YPC_1722 putative transposase K07493 K07493; putative transposase
D YPC_1820 putative transposase K07493 K07493; putative transposase
D YPC_2139 putative transposase K07493 K07493; putative transposase
D YPC_2176 putative transposase K07493 K07493; putative transposase
D YPC_2208 putative transposase K07493 K07493; putative transposase
D YPC_2334 putative transposase K07493 K07493; putative transposase
D YPC_2556 putative transposase K07493 K07493; putative transposase
D YPC_2587 putative transposase K07493 K07493; putative transposase
D YPC_2661 putative transposase K07493 K07493; putative transposase
D YPC_3047 putative transposase K07493 K07493; putative transposase
D YPC_3321 putative transposase K07493 K07493; putative transposase
D YPC_4875 putative transposase K07493 K07493; putative transposase
D YPC_4244 putative transposase K07493 K07493; putative transposase
D YPC_2089 putative transposase K07493 K07493; putative transposase
D YPC_1456 putative transposase K07493 K07493; putative transposase
D YPC_2373 putative transposase K07493 K07493; putative transposase
D YPC_0284 transposase for insertion sequence IS1661 K07497 K07497; putative transposase
D YPC_0554 transposase for insertion sequence IS1661 K07497 K07497; putative transposase
D YPC_3833 transposase for insertion sequence IS1661 K07497 K07497; putative transposase
D YPC_4431 transposase for insertion sequence IS1661 K07497 K07497; putative transposase
D YPC_4563 transposase for insertion sequence IS1661 K07497 K07497; putative transposase
D YPC_4613 transposase for insertion sequence IS1661 K07497 K07497; putative transposase
D YPC_4749 transposase K07497 K07497; putative transposase
D YPC_4673 transposase K07497 K07497; putative transposase
D YPC_2312 putative integrase core domain protein K07497 K07497; putative transposase
D YPC_4730 putative transposase ORFA K07497 K07497; putative transposase
D YPC_4760 putative transposase K07497 K07497; putative transposase
D YPC_4736 transposase K07497 K07497; putative transposase
D YPC_4215 transposase K07497 K07497; putative transposase
D YPC_0052 transposase for insertion sequence IS1661 K07497 K07497; putative transposase
D YPC_0532 putative transposase K07497 K07497; putative transposase
D YPC_4759 putative transposase K07497 K07497; putative transposase
D YPC_3221 IS1400 transposase A K07497 K07497; putative transposase
D YPC_2385 tnpA; putative transposase K07497 K07497; putative transposase
D YPC_0533 putative transposase K07497 K07497; putative transposase
D YPC_0795 transposase for insertion sequence IS1661 K07497 K07497; putative transposase
D YPC_2368 transposase K07497 K07497; putative transposase
D YPC_4754 hypothetical protein K07497 K07497; putative transposase
D YPC_2227 putative transposase K14059 int; integrase
C 99979 Viral proteins
C 99998 Others
D YPC_1983 pspA; regulatory protein for phage-shock-protein operon K03969 pspA; phage shock protein A
D YPC_1980 Phage shock protein D K03971 pspD; phage shock protein D
D YPC_3402 ybaB; conserved protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D YPC_0368 putative permease protein K03293 TC.AAT; amino acid transporter, AAT family
D YPC_1631 putative BCCT-family transporter K03451 TC.BCT; betaine/carnitine transporter, BCCT family
D YPC_1994 tppB; putative proton dependent peptide transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D YPC_1378 putative permease K03307 TC.SSS; solute:Na+ symporter, SSS family
D YPC_3488 brnQ; branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family
D YPC_1130 putative permease K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family
D YPC_4157 putative Na+ dependent nucleoside transporter-family protein K03317 TC.CNT; concentrative nucleoside transporter, CNT family
D YPC_0243 putative membrane transport protein K03319 TC.DASS; divalent anion:Na+ symporter, DASS family
D YPC_4603 putative membrane protein K07085 K07085; putative transport protein
D YPC_2859 ybjL; putative transporter K07085 K07085; putative transport protein
C 99978 Cell growth
D YPC_1822 yciB; putative inner membrane protein K06190 ispZ; intracellular septation protein
D YPC_0411 dcrB; periplasmic protein; required for phage C1 adsorption K27311 dcrB; inner membrane lipoprotein DcrB
D YPC_0599 ytfE; iron metabolism protein K07322 ytfE; regulator of cell morphogenesis and NO signaling
D YPC_2168 ycgB; conserved protein K06415 spoVR; stage V sporulation protein R
D YPC_0223 envC; protease with a role in cell division K22719 envC; murein hydrolase activator
C 99993 Cell motility
D YPC_1713 ycfM; putative outer membrane lipoprotein K07337 K07337; penicillin-binding protein activator
D YPC_2724 sxy; CRP-S promoter co-activator K07343 tfoX; DNA transformation protein and related proteins
D YPC_2109 putative chaperone protein K15540 ecpD; chaperone protein EcpD
D YPC_1454 putative pili chaperone protein K15540 ecpD; chaperone protein EcpD
D YPC_1069 syd; hypothetical protein K15723 syd; SecY interacting protein Syd
C 99995 Signaling proteins
D YPC_3758 AmpE protein K03807 ampE; AmpE protein
D YPC_0709 terA; putative tellurite resistance protein K05792 terA; tellurite resistance protein TerA
D YPC_0705 terE; tellurium resistance protein K05795 terD; tellurium resistance protein TerD
D YPC_0706 terD; tellurium resistance protein K05795 terD; tellurium resistance protein TerD
D YPC_0710 terZ; tellurium resistance protein K05791 terZ; tellurium resistance protein TerZ
D YPC_2113 proQ; ProP effector K03607 proQ; ProP effector
D YPC_4476 uspA; universal stress global response regulator K06149 uspA; universal stress protein A
D YPC_1925 stress-induced protein K14055 uspE; universal stress protein E
D YPC_0455 putative carbon starvation protein K06200 cstA; carbon starvation protein
D YPC_1864 cstA; putative carbon starvation protein A K06200 cstA; carbon starvation protein
D YPC_4225 bipA; GTP-binding protein K06207 typA; GTP-binding protein
D YPC_3254 ybeZ; putative protein with nucleoside triphosphate hydrolase domain K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D YPC_2160 yeaG; conserved protein with nucleoside triphosphate hydrolase domain K07180 prkA; serine protein kinase
D YPC_3926 htrG; hypothetical protein K07184 ygiM; SH3 domain protein
D YPC_4150 smp; putative membrane protein K07186 smp; membrane protein
D YPC_3455 yajQ; putative nucleotide binding protein K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
D YPC_2798 lolA; outer-membrane lipoprotein carrier protein K03634 lolA; outer membrane lipoprotein carrier protein
D YPC_2304 lolB; outer membrane lipoprotein LolB K02494 lolB; outer membrane lipoprotein LolB
D YPC_1494 vacJ; putative lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA
D YPC_0357 wzzE; Enterobacterial Common Antigen (ECA) polysaccharide chain length modulator K05790 wzzE; lipopolysaccharide biosynthesis protein WzzE
D YPC_2004 slyB; outer membrane lipoprotein K06077 slyB; outer membrane lipoprotein SlyB
D YPC_4365 outer membrane lipoprotein K06077 slyB; outer membrane lipoprotein SlyB
D YPC_1092 ompH; periplasmic chaperone K06142 hlpA; outer membrane protein
D YPC_3675 nlpD; putative outer membrane lipoprotein K06194 nlpD; lipoprotein NlpD
D YPC_3831 nlpI; lipoprotein K05803 nlpI; lipoprotein NlpI
D YPC_1828 ompW; outer membrane protein W K07275 ompW; outer membrane protein
D YPC_3596 putative exported protein K07283 ydiY; putative salt-induced outer membrane protein
D YPC_2240 yeaY; putative lipoprotein K07285 slp; outer membrane lipoprotein
D YPC_3445 yajG; putative lipoprotein K07286 yajG; uncharacterized lipoprotein
D YPC_2626 asmA; putative assembly protein K07289 asmA; AsmA protein
D YPC_3364 ybbJ; conserved inner membrane protein K07340 ybbJ; inner membrane protein
D YPC_2656 putative exported protein K02005 ABC.CD.TX; HlyD family secretion protein
D YPC_1678 putative membrane protein K11744 tqsA; AI-2 transport protein TqsA
D YPC_1859 osmB; lipoprotein K04062 osmB; osmotically inducible lipoprotein OsmB
D YPC_0914 creD; putative membrane protein K06143 creD; inner membrane protein
D YPC_3070 yfgA; conserved protein K15539 rodZ; cytoskeleton protein RodZ
D YPC_4321 aaeX; membrane protein of efflux system K21695 aaeX; protein AaeX
D YPC_3989 putative membrane protein K21908 hdeD; membrane protein HdeD
C 99994 Others
D YPC_4636 phoU; negative regulator of PhoR/PhoB two-component regulator K02039 phoU; phosphate transport system protein
D YPC_0145 bfd; bacterioferritin-associated ferredoxin K02192 bfd; bacterioferritin-associated ferredoxin
D YPC_0708 terB; tellurite resistance protein K05793 terB; tellurite resistance protein TerB
D YPC_0707 terC; tellurium resistance protein K05794 terC; tellurite resistance protein TerC
D YPC_0656 cutA; copper binding protein K03926 cutA; periplasmic divalent cation tolerance protein
D YPC_2267 Cytoplasmic copper homeostasis protein cutC K06201 cutC; copper homeostasis protein
D YPC_3800 phnK; phosphonates transport ATP-binding protein K05781 phnK; putative phosphonate transport system ATP-binding protein
D YPC_4003 apaG; protein associated with Co2+ and Mg2+ efflux K06195 apaG; ApaG protein
D YPC_0384 cyaY; frataxin-like protein K06202 cyaY; iron-sulfur cluster assembly protein CyaY
D YPC_0724 hmuS; hemin transport protein K07225 hmuS; putative hemin transport protein
D YPC_0719 hypothetical protein K07227 chuX; heme iron utilization protein
D YPC_3411 putative ACR protein K06039 ychN; uncharacterized protein involved in oxidation of intracellular sulfur
B
B 09194 Poorly characterized
C 99996 General function prediction only
D YPC_1524 cvpA; membrane protein required for colicin V production K03558 cvpA; membrane protein required for colicin V production
D YPC_2741 pqiB; paraquat-inducible protein B K06192 pqiB; paraquat-inducible protein B
D YPC_2276 hypothetical protein K03810 mviM; virulence factor
D YPC_3572 yfiM; hypothetical protein K05811 yfiM; putative lipoprotein
D YPC_4164 osmY; periplasmic protein K04065 osmY; hyperosmotically inducible periplasmic protein
D YPC_2286 ycdX; putative zinc-binding hydrolase K04477 ycdX; putative hydrolase
D YPC_3148 yfiD; pyruvate formate lyase subunit K06866 grcA; autonomous glycyl radical cofactor
D YPC_3714 yadR; conserved protein K15724 erpA; iron-sulfur cluster insertion protein
D YPC_2038 sufA; Fe-S cluster assembly protein K05997 sufA; Fe-S cluster assembly protein SufA
D YPC_2037 sufB; component of SufBCD complex K09014 sufB; Fe-S cluster assembly protein SufB
D YPC_2035 sufD; component of SufBCD complex K09015 sufD; Fe-S cluster assembly protein SufD
D YPC_1329 putative membrane protein K07038 K07038; inner membrane protein
D YPC_2099 ydjM; putative inner membrane protein regulated by LexA K07038 K07038; inner membrane protein
D YPC_4223 Ribonuclease BN K07058 K07058; membrane protein
D YPC_4493 yhjD; conserved inner membrane protein K07058 K07058; membrane protein
D YPC_0652 fxsA; inner membrane protein K07113 fxsA; UPF0716 protein FxsA
D YPC_1059 ygdK; putative Fe-S metabolism protein K02426 sufE; cysteine desulfuration protein SufE
D YPC_2033 sufE; sulfur acceptor protein K02426 sufE; cysteine desulfuration protein SufE
D YPC_1677 yceA; conserved protein K07146 K07146; UPF0176 protein
D YPC_1739 hflD; putative lysogenization regulator K07153 hflD; high frequency lysogenization protein
D YPC_2624 putative ferric iron reductase K13255 fhuF; ferric iron reductase protein FhuF
D YPC_1480 lemA; putative exported protein K03744 lemA; LemA protein
D YPC_0132 slyX; conserved protein K03745 slyX; SlyX protein
D YPC_0183 smg; conserved protein K03747 smg; Smg protein
D YPC_4133 creA; conserved protein K05805 creA; CreA protein
D YPC_0870 sprT; conserved protein K02742 sprT; SprT protein
D YPC_1523 dedD; conserved protein K03749 dedD; DedD protein
D YPC_0089 damX; membrane protein, interferes with cell division K03112 damX; DamX protein
D YPC_2643 sanA; hypothetical protein K03748 sanA; SanA protein
D YPC_1520 dedA; conserved inner membrane protein K03975 dedA; membrane-associated protein
D YPC_2742 pqiA; paraquat-inducible membrane protein A K03808 pqiA; paraquat-inducible protein A
D YPC_2116 yebS; conserved inner membrane protein K03808 pqiA; paraquat-inducible protein A
D YPC_1590 elaB; putative membrane protein K05594 elaB; ElaB protein
D YPC_1978 ycjF; conserved inner membrane protein K08990 ycjF; putative membrane protein
D YPC_0419 yhhL; conserved inner membrane protein K08993 yhhL; putative membrane protein
D YPC_3303 putative membrane protein K08996 yagU; putative membrane protein
D YPC_2137 hypothetical protein K09858 K09858; SEC-C motif domain protein
D YPC_3422 ybaY; putative outer membrane lipoprotein K09914 K09914; putative lipoprotein
D YPC_0041 malM; maltose operon periplasmic protein K05775 malM; maltose operon periplasmic protein
D YPC_0034 psiE; phosphate-starvation-inducible protein PsiE K13256 psiE; protein PsiE
D YPC_1477 conserved protein K06193 phnA; protein PhnA
C 99997 Function unknown
D YPC_0548 enterotoxin-like protein K06867 K06867; uncharacterized protein
D YPC_3657 hypothetical protein K06867 K06867; uncharacterized protein
D YPC_3144 yplB; putative phospholipase A accessory protein K06867 K06867; uncharacterized protein
D YPC_1327 putative sulfatase modifier protein K06871 K06871; uncharacterized protein
D YPC_0977 putative regulatory protein K06871 K06871; uncharacterized protein
D YPC_2658 putative heme-binding protein K06871 K06871; uncharacterized protein
D YPC_2386 hypothetical protein K06887 K06887; uncharacterized protein
D YPC_3053 hypothetical protein K06887 K06887; uncharacterized protein
D YPC_3314 putative membrane protein K06887 K06887; uncharacterized protein
D YPC_2942 hypothetical protein K06887 K06887; uncharacterized protein
D YPC_0610 hypothetical protein K06889 K06889; uncharacterized protein
D YPC_2319 hypothetical protein K06889 K06889; uncharacterized protein
D YPC_1220 putative membrane protein K06890 K06890; uncharacterized protein
D YPC_2378 phage-related protein K06903 W; Bacteriophage baseplate protein W
D YPC_1979 ycjX; conserved protein with nucleoside triphosphate hydrolase domain K06918 K06918; uncharacterized protein
D YPC_4857 putative DNA-binding protein K06921 K06921; uncharacterized protein
D YPC_2717 yccU; putative CoA-binding protein with NAD(P)-binding Rossmann-fold domain K06929 K06929; uncharacterized protein
D YPC_2908 hypothetical protein K06940 K06940; uncharacterized protein
D YPC_2100 ydjN; putative transporter K06956 K06956; uncharacterized protein
D YPC_3907 yqiA; esterase K07000 K07000; uncharacterized protein
D YPC_1716 ycfP; hypothetical protein K07000 K07000; uncharacterized protein
D YPC_2940 yejM; putative hydrolase, inner membrane K07014 K07014; uncharacterized protein
D YPC_0116 yheT; Hydrolase, alpha/beta fold family functionallycoupled to Phosphoribulokinase K07019 K07019; uncharacterized protein
D YPC_4119 yaaH; conserved inner membrane protein associated with acetate transport K07034 K07034; uncharacterized protein
D YPC_1314 putative membrane protein K07054 K07054; uncharacterized protein
D YPC_0129 yheV; putative cytoplasmic protein, probablyassociated with Glutathione-regulated potassium-efflux K07070 K07070; uncharacterized protein
D YPC_1533 yfcH; conserved protein with NAD(P)-binding Rossmann-fold domain K07071 K07071; uncharacterized protein
D YPC_1504 yfcA; conserved inner membrane protein K07090 K07090; uncharacterized protein
D YPC_1535 Phosphodiesterase yfcE K07095 K07095; uncharacterized protein
D YPC_0596 putative exported protein K07109 K07109; uncharacterized protein
D YPC_0732 putative integral membrane protein K07112 K07112; uncharacterized protein
D YPC_4259 yraM; putative lipoprotein K07121 K07121; uncharacterized protein
D YPC_2333 putative exported protein K07126 K07126; uncharacterized protein
D YPC_4791 hypothetical protein K07128 K07128; uncharacterized protein
D YPC_4793 putative ABC transporter ATP-binding protein K07128 K07128; uncharacterized protein
D YPC_2264 yecN; putative inner membrane protein K07136 K07136; uncharacterized protein
D YPC_4269 yhcC; putative Fe-S oxidoreductase K07139 K07139; uncharacterized protein
D YPC_2745 ycbX; putative 2Fe-2S cluster-containing protein K07140 K07140; MOSC domain-containing protein
D YPC_2648 yeiB; conserved inner membrane protein K07148 K07148; uncharacterized protein
D YPC_4622 YidD K08998 K08998; uncharacterized protein
D YPC_0856 yggU; conserved protein K09131 K09131; uncharacterized protein
D YPC_3275 ybeD; conserved protein K09158 K09158; uncharacterized protein
D YPC_2228 ycgN; conserved protein K09160 K09160; uncharacterized protein
D YPC_1550 yfbU; conserved protein K09161 K09161; uncharacterized protein
D YPC_1345 yaiI; conserved protein K09768 K09768; uncharacterized protein
D YPC_1818 yciI; putative enzyme K09780 K09780; uncharacterized protein
D YPC_2161 yeaH; conserved protein K09786 K09786; uncharacterized protein
D YPC_3407 Hypothetical protein DUF454 K09790 K09790; uncharacterized protein
D YPC_2770 ycaR; conserved protein K09791 K09791; uncharacterized protein
D YPC_1156 yfjF; hypothetical protein K09801 K09801; uncharacterized protein
D YPC_2588 yeeX; conserved protein K09802 K09802; uncharacterized protein
D YPC_2376 hypothetical protein K09803 K09803; uncharacterized protein
D YPC_0886 yggE; conserved protein K09807 K09807; uncharacterized protein
D YPC_2821 putative virulence factor K09824 virK; uncharacterized protein
D YPC_3526 putative exported protein K05952 K05952; uncharacterized protein
D YPC_2740 ymbA; putative lipoprotein protein K09857 K09857; uncharacterized protein
D YPC_4126 yaaA; conserved protein K09861 K09861; uncharacterized protein
D YPC_3768 yacG; zinc-binding protein K09862 K09862; uncharacterized protein
D YPC_0520 yjaG; conserved protein K09891 K09891; uncharacterized protein
D YPC_4230 yihI; conserved protein K09894 K09894; uncharacterized protein
D YPC_0894 ygfB; hypothetical protein K09895 K09895; uncharacterized protein
D YPC_4241 yihD; conserved protein K09896 K09896; uncharacterized protein
D YPC_0320 yifE; conserved protein K09897 K09897; uncharacterized protein
D YPC_0115 yheU; conserved protein K09898 K09898; uncharacterized protein
D YPC_1549 yfbV; conserved inner membrane protein K09899 K09899; uncharacterized protein
D YPC_1810 yciU; putative double-stranded DNA mimic K09901 K09901; uncharacterized protein
D YPC_2233 ycgL; conserved protein K09902 K09902; uncharacterized protein
D YPC_2939 yejL; conserved protein K09904 K09904; uncharacterized protein
D YPC_2269 yecM; putative metal-binding enzyme K09907 K09907; uncharacterized protein
D YPC_4278 yhcB; conserved protein K09908 K09908; uncharacterized protein
D YPC_2719 hypothetical protein K09909 K09909; uncharacterized protein
D YPC_3746 yacL; conserved protein K09910 K09910; uncharacterized protein
D YPC_2729 ycbG; conserved protein K09911 K09911; uncharacterized protein
D YPC_2570 Nucleoprotein/polynucleotide-associated enzyme K09912 K09912; uncharacterized protein
D YPC_2277 hypothetical protein K09915 K09915; uncharacterized protein
D YPC_2155 yeaC; conserved protein K09916 K09916; uncharacterized protein
D YPC_2507 yoaH; conserved protein K09917 K09917; uncharacterized protein
D YPC_2504 hypothetical protein K09918 K09918; uncharacterized protein
D YPC_3910 yqiB; putative dehydrogenase K09920 K09920; uncharacterized protein
D YPC_0387 yigA; conserved protein K09921 K09921; uncharacterized protein
D YPC_0849 yggL; hypothetical protein K09923 K09923; uncharacterized protein
D YPC_0622 yjeT; conserved inner membrane protein K09937 K09937; uncharacterized protein
D YPC_1268 hypothetical protein K09946 K09946; uncharacterized protein
D YPC_1397 hypothetical protein K09954 K09954; uncharacterized protein
D YPC_1400 hypothetical protein K09962 K09962; uncharacterized protein
D YPC_2348 hypothetical protein K09975 K09975; uncharacterized protein
D YPC_1955 putative exported protein K09978 K09978; uncharacterized protein
D YPC_3806 yhbP; conserved protein K09979 K09979; uncharacterized protein
D YPC_1817 hypothetical protein K09981 K09981; uncharacterized protein
!
#
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 27, 2024