+F Repair protein KO
#
DNA Repair and Recombination Proteins - Paracidovorax citrulli
%
!
AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D Aave_2824 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D Aave_0906 deoxyribodipyrimidine photo-lyase type I K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E Aave_0587 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E Aave_3604 A/G-specific DNA-adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E Aave_1562 DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
E Aave_0185 helicase c2 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D Aave_3686 8-oxo-dGTPase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Aave_4021 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Aave_1329 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D Aave_2824 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D Aave_0906 deoxyribodipyrimidine photo-lyase type I K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D Aave_4518 deoxyribodipyrimidine photolyase-related protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
D Aave_3988 DNA-N1-methyladenine dioxygenase K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
C BER (base exicision repair)
D DNA glycosylases
E Aave_0587 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E Aave_4571 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E Aave_2321 HhH-GPD family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E Aave_2823 DNA-3-methyladenine glycosylase II / DNA-O6-methylguanine--protein-cysteine S-methyltransferase K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E Aave_3604 A/G-specific DNA-adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E Aave_0775 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E Aave_3606 DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E Aave_1848 Formamidopyrimidine-DNA glycolase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
E Aave_1562 DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E Aave_1447 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E Aave_2122 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E Aave_0288 exodeoxyribonuclease III Xth K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E Aave_3702 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E Aave_2841 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E Aave_1930 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E Aave_4341 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
E Aave_2123 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
E Aave_4708 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E Aave_2441 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
E Aave_1664 Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
E Aave_1916 ATP-dependent DNA helicase UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E Aave_3186 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E Aave_0646 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E Aave_0675 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E Aave_1930 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E Aave_2841 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F Aave_4531 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F Aave_4530 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F Aave_0626 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F Aave_3584 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F Aave_1580 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E Aave_2052 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E Aave_1300 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E Aave_3236 Exodeoxyribonuclease I subunit C K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
E Aave_2567 Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E Aave_2013 exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E Aave_3240 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E Aave_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E Aave_3161 DNA polymerase III chi subunit, HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E Aave_4546 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E Aave_3411 DNA-directed DNA polymerase K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E Aave_0016 DNA-directed DNA polymerase K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E Aave_2449 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E Aave_2644 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E Aave_2841 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E Aave_1916 ATP-dependent DNA helicase UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E Aave_3186 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E Aave_0646 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E Aave_0675 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E Aave_0559 single-strand binding protein/Primosomal replication protein n K03111 ssb; single-strand DNA-binding protein
E Aave_4713 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
E Aave_2684 single-strand binding protein/Primosomal replication protein n K03111 ssb; single-strand DNA-binding protein
E Aave_1638 D12 class N6 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
E Aave_2898 D12 class N6 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
E Aave_4108 D12 class N6 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E Aave_4640 recA protein K03553 recA; recombination protein RecA
E Aave_4240 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E Aave_4237 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E Aave_0833 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E Aave_4471 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E Aave_1229 putative primosomal replication protein K02686 priB; primosomal replication protein N
E Aave_3236 Exodeoxyribonuclease I subunit C K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
E Aave_2637 SMC domain protein K03546 sbcC; DNA repair protein SbcC/Rad50
E Aave_2636 Exodeoxyribonuclease I subunit D K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E Aave_4640 recA protein K03553 recA; recombination protein RecA
E Aave_0262 DNA replication and repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E Aave_0593 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E Aave_0004 putative transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E Aave_3702 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E Aave_1198 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E Aave_2646 recombination protein RecR K06187 recR; recombination protein RecR
E Aave_3602 DNA replication and repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E Aave_0025 putative exonuclease, RdgC K03554 rdgC; recombination associated protein RdgC
E Aave_4240 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E Aave_4237 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E Aave_0833 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
E Aave_2641 DNA helicase/exodeoxyribonuclease V, subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
E Aave_2640 conserved hypothetical protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D Other HR factor
D Archaeal homologous recombinant proteins
E Aave_2637 SMC domain protein K03546 sbcC; DNA repair protein SbcC/Rad50
E Aave_2636 Exodeoxyribonuclease I subunit D K03547 sbcD; DNA repair protein SbcD/Mre11
E Aave_3204 protein of unknown function DUF853, NPT hydrolase putative K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
E Aave_2520 Ku domain protein K10979 ku; DNA end-binding protein Ku
E Aave_2519 ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase module K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F Aave_3280 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F Aave_0003 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F Aave_1492 putative DNA topoisomerase, type I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F Aave_1666 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F Aave_0793 beta-lactamase domain protein K07455 recT; recombination protein RecT
F Aave_3702 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F Aave_1198 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F Aave_2646 recombination protein RecR K06187 recR; recombination protein RecR
F Aave_2841 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F Aave_0895 DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
F Aave_2853 histone family protein DNA-binding protein K04764 ihfA; integration host factor subunit alpha
F Aave_3286 histone family protein DNA-binding protein K05788 ihfB; integration host factor subunit beta
E Supressor
F Aave_3236 Exodeoxyribonuclease I subunit C K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
F Aave_0181 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F Aave_4005 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F Aave_4341 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
F Aave_2123 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
F Aave_4708 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F Aave_2441 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
F Aave_2580 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS
F Aave_1150 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D Aave_1964 DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
C Other SOS response factors
D Aave_4640 recA protein K03553 recA; recombination protein RecA
D Aave_2558 SOS-response transcriptional repressor, LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D Aave_3602 DNA replication and repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D Aave_2670 conserved hypothetical protein K14160 imuA; protein ImuA
D Aave_0516 conserved hypothetical protein K14160 imuA; protein ImuA
D Aave_2734 conserved hypothetical protein K14160 imuA; protein ImuA
D Aave_2733 conserved hypothetical protein K14161 imuB; protein ImuB
D Aave_0517 conserved hypothetical protein K14161 imuB; protein ImuB
D Aave_2671 conserved hypothetical protein K14161 imuB; protein ImuB
D Aave_2732 error-prone DNA polymerase, DnaE-like protein K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D Aave_0518 DNA polymerase III, alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D Aave_2672 DNA polymerase III, alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D Aave_0559 single-strand binding protein/Primosomal replication protein n K03111 ssb; single-strand DNA-binding protein
D Aave_4713 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Aave_2684 single-strand binding protein/Primosomal replication protein n K03111 ssb; single-strand DNA-binding protein
D Aave_4641 regulatory protein RecX K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D Aave_4475 UvrD/REP helicase K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D Aave_0013 helicase c2 K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D Aave_3242 helicase c2 K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D Aave_0376 DEAD/H associated domain protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
C Modulation of nucleotide pools
D Aave_3686 8-oxo-dGTPase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Aave_4021 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Aave_1329 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D Aave_0667 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Aave_0864 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Aave_0863 Ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
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#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024