+D GENES KO
#
KEGG Orthology (KO) - Desulfovibrio desulfuricans ATCC 27774
%
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A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:dds00010]
D Ddes_1390 Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D Ddes_0851 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Ddes_1423 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D Ddes_1197 Inositol phosphatase/fructose-16-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D Ddes_0753 fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D Ddes_0131 fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Ddes_0338 predicted phospho-2-dehydro-3-deoxyheptonate aldolase K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10]
D Ddes_1176 Triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D Ddes_0156 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Ddes_0132 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Ddes_0479 Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D Ddes_0561 phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D Ddes_2216 Phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Ddes_1103 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Ddes_1552 pyruvate phosphate dikinase PEP/pyruvate-binding K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D Ddes_1565 Pyruvate, water dikinase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D Ddes_1568 pyruvate phosphate dikinase PEP/pyruvate-binding K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D Ddes_1644 pyruvate phosphate dikinase PEP/pyruvate-binding K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D Ddes_0151 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Ddes_2347 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Ddes_1416 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Ddes_0298 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D Ddes_0137 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D Ddes_0136 thiamine pyrophosphate protein domain protein TPP-binding K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D Ddes_1943 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D Ddes_1981 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Ddes_1748 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Ddes_1209 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
C 00020 Citrate cycle (TCA cycle) [PATH:dds00020]
D Ddes_0102 pyruvate carboxyltransferase K05942 E2.3.3.3; citrate (Re)-synthase [EC:2.3.3.3]
D Ddes_0099 aconitate hydratase domain protein K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D Ddes_0101 isocitrate/isopropylmalate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D Ddes_0151 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Ddes_2347 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Ddes_1416 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Ddes_0137 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D Ddes_0136 thiamine pyrophosphate protein domain protein TPP-binding K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D Ddes_0135 pyruvate ferredoxin/flavodoxin oxidoreductase K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3]
D Ddes_0138 4Fe-4S ferredoxin iron-sulfur binding domain protein K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3]
D Ddes_1531 succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D Ddes_1532 succinate dehydrogenase and fumarate reductase iron-sulfur protein K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D Ddes_1530 fumarate reductase respiratory complex transmembrane subunit K25996 frdC; succinate dehydrogenase subunit C
D Ddes_1528 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D Ddes_1529 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D Ddes_1553 Carbamoyl-phosphate synthase L chain ATP-binding K01958 PC; pyruvate carboxylase [EC:6.4.1.1]
D Ddes_0298 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
C 00030 Pentose phosphate pathway [PATH:dds00030]
D Ddes_0851 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Ddes_1131 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31]
D Ddes_0481 Ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D Ddes_0480 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Ddes_1446 ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D Ddes_1209 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Ddes_1451 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D Ddes_1775 Aldehyde ferredoxin oxidoreductase K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5]
D Ddes_0131 fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Ddes_0338 predicted phospho-2-dehydro-3-deoxyheptonate aldolase K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10]
D Ddes_1197 Inositol phosphatase/fructose-16-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D Ddes_0753 fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D Ddes_1423 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C 00040 Pentose and glucuronate interconversions [PATH:dds00040]
D Ddes_1145 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D Ddes_1712 Nucleotidyl transferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D Ddes_0481 Ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D Ddes_0068 class II aldolase/adducin family protein K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
C 00051 Fructose and mannose metabolism [PATH:dds00051]
D Ddes_0413 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D Ddes_0414 Phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D Ddes_0412 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D Ddes_0411 NAD-dependent epimerase/dehydratase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D Ddes_0068 class II aldolase/adducin family protein K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
D Ddes_1423 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D Ddes_1197 Inositol phosphatase/fructose-16-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D Ddes_0753 fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D Ddes_0131 fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Ddes_0338 predicted phospho-2-dehydro-3-deoxyheptonate aldolase K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10]
D Ddes_1176 Triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D Ddes_1446 ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D Ddes_0971 PTS system fructose subfamily IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D Ddes_1794 PTS system mannose/fructose/sorbose family IID component K02796 manZ; mannose PTS system EIID component
C 00052 Galactose metabolism [PATH:dds00052]
D Ddes_1950 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Ddes_2048 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Ddes_2202 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Ddes_1712 Nucleotidyl transferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D Ddes_1209 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Ddes_1390 Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D Ddes_1423 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C 00053 Ascorbate and aldarate metabolism [PATH:dds00053]
D Ddes_1145 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D Ddes_0025 NAD-dependent epimerase/dehydratase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D Ddes_1981 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Ddes_2049 HpcH/HpaI aldolase K01630 garL; 2-dehydro-3-deoxyglucarate aldolase [EC:4.1.2.20]
C 00500 Starch and sucrose metabolism [PATH:dds00500]
D Ddes_1712 Nucleotidyl transferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D Ddes_0877 glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D Ddes_0470 glycosyl transferase group 1 K16150 K16150; glycogen synthase [EC:2.4.1.11]
D Ddes_0468 alpha-glucan phosphorylase K16153 K16153; glycogen phosphorylase/synthase [EC:2.4.1.1 2.4.1.11]
D Ddes_1321 alpha amylase all-beta K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D Ddes_0469 Alpha-amylase K07405 E3.2.1.1A; alpha-amylase [EC:3.2.1.1]
D Ddes_1209 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Ddes_1390 Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D Ddes_0851 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:dds00520]
D Ddes_2371 glucosamine/fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D Ddes_1713 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D Ddes_1696 UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D Ddes_1845 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D Ddes_1115 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D Ddes_1015 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D Ddes_0109 NAD-dependent epimerase/dehydratase K02473 wbpP; UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine 4-epimerase [EC:5.1.3.7 5.1.3.-]
D Ddes_1910 nucleotide sugar dehydrogenase K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
D Ddes_0779 NAD-dependent epimerase/dehydratase K08678 UXS1; UDP-glucuronate decarboxylase [EC:4.1.1.35]
D Ddes_1390 Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D Ddes_1209 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Ddes_1712 Nucleotidyl transferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D Ddes_1145 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D Ddes_1950 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Ddes_2048 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Ddes_2202 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Ddes_0025 NAD-dependent epimerase/dehydratase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D Ddes_0971 PTS system fructose subfamily IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D Ddes_1794 PTS system mannose/fructose/sorbose family IID component K02796 manZ; mannose PTS system EIID component
D Ddes_0851 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Ddes_0414 Phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D Ddes_0413 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D Ddes_0412 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D Ddes_2212 DegT/DnrJ/EryC1/StrS aminotransferase K13010 per; perosamine synthetase [EC:2.6.1.102]
D Ddes_0411 NAD-dependent epimerase/dehydratase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D Ddes_0877 glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D Ddes_0876 CDP-glucose 4,6-dehydratase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45]
C 00620 Pyruvate metabolism [PATH:dds00620]
D Ddes_1748 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Ddes_0298 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D Ddes_0137 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D Ddes_0136 thiamine pyrophosphate protein domain protein TPP-binding K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D Ddes_0151 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Ddes_2347 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Ddes_1416 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Ddes_1360 acetaldehyde dehydrogenase (acetylating) K00132 E1.2.1.10; acetaldehyde dehydrogenase (acetylating) [EC:1.2.1.10]
D Ddes_1943 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D Ddes_0296 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D Ddes_0297 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D Ddes_1103 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Ddes_0458 Acetyl-CoA carboxylase K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D Ddes_1981 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Ddes_1546 D-lactate dehydrogenase (cytochrome) K18930 dld; D-lactate dehydrogenase
D Ddes_1731 beta-lactamase domain protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D Ddes_2379 conserved hypothetical protein K22373 larA; lactate racemase [EC:5.1.2.1]
D Ddes_1534 Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)) K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D Ddes_1553 Carbamoyl-phosphate synthase L chain ATP-binding K01958 PC; pyruvate carboxylase [EC:6.4.1.1]
D Ddes_1528 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D Ddes_1529 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D Ddes_1531 succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D Ddes_1532 succinate dehydrogenase and fumarate reductase iron-sulfur protein K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D Ddes_1530 fumarate reductase respiratory complex transmembrane subunit K25996 frdC; succinate dehydrogenase subunit C
D Ddes_1552 pyruvate phosphate dikinase PEP/pyruvate-binding K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D Ddes_1565 Pyruvate, water dikinase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D Ddes_1568 pyruvate phosphate dikinase PEP/pyruvate-binding K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D Ddes_1644 pyruvate phosphate dikinase PEP/pyruvate-binding K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D Ddes_0505 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:dds00630]
D Ddes_1748 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Ddes_0099 aconitate hydratase domain protein K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D Ddes_1994 FAD linked oxidase domain protein K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14]
D Ddes_0882 FAD linked oxidase domain protein K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14]
D Ddes_1993 protein of unknown function DUF224 cysteine-rich region domain protein K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14]
D Ddes_0883 protein of unknown function DUF224 cysteine-rich region domain protein K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14]
D Ddes_1494 Catalase K03781 katE; catalase [EC:1.11.1.6]
D Ddes_1564 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00015 gyaR; glyoxylate reductase [EC:1.1.1.26]
D Ddes_0856 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29]
D Ddes_1139 HAD-superfamily hydrolase, subfamily IA, variant 1 K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D Ddes_1080 HAD-superfamily hydrolase, subfamily IA, variant 3 K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D Ddes_0641 Alanine--glyoxylate transaminase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D Ddes_1149 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Ddes_1593 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Ddes_1617 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Ddes_0788 Glycine dehydrogenase (decarboxylating) K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D Ddes_0789 Glycine dehydrogenase (decarboxylating) K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2]
D Ddes_0786 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D Ddes_0151 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Ddes_2347 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Ddes_1416 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Ddes_0152 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D Ddes_0787 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D Ddes_2348 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D Ddes_1417 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D Ddes_1860 Glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D Ddes_0555 formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D Ddes_0827 formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D Ddes_1545 molybdopterin oxidoreductase K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D Ddes_0826 4Fe-4S ferredoxin iron-sulfur binding domain protein K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D Ddes_0556 formate dehydrogenase, beta subunit, putative K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D Ddes_2039 4Fe-4S ferredoxin iron-sulfur binding domain protein K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D Ddes_2065 4Fe-4S ferredoxin iron-sulfur binding domain protein K00124 fdoH; formate dehydrogenase iron-sulfur subunit
C 00640 Propanoate metabolism [PATH:dds00640]
D Ddes_1748 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Ddes_0296 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D Ddes_0297 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D Ddes_0151 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Ddes_2347 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Ddes_1416 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Ddes_0458 Acetyl-CoA carboxylase K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
C 00650 Butanoate metabolism [PATH:dds00650]
D Ddes_1332 crotonyl-CoA reductase K17829 ccrA; crotonyl-CoA reductase [EC:1.3.1.86]
D Ddes_1360 acetaldehyde dehydrogenase (acetylating) K00132 E1.2.1.10; acetaldehyde dehydrogenase (acetylating) [EC:1.2.1.10]
D Ddes_1531 succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D Ddes_1532 succinate dehydrogenase and fumarate reductase iron-sulfur protein K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D Ddes_1530 fumarate reductase respiratory complex transmembrane subunit K25996 frdC; succinate dehydrogenase subunit C
D Ddes_0045 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D Ddes_1869 Aldehyde Dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D Ddes_0298 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D Ddes_0137 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D Ddes_0136 thiamine pyrophosphate protein domain protein TPP-binding K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D Ddes_1903 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Ddes_1904 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:dds00660]
D Ddes_1903 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Ddes_1904 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D Ddes_0506 homoaconitate hydratase family protein K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D Ddes_0507 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D Ddes_0509 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:dds00562]
D Ddes_1173 Inositol-phosphate phosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D Ddes_1176 Triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:dds00190]
D Ddes_1665 NADH-ubiquinone/plastoquinone oxidoreductase chain 3 K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D Ddes_1663 NADH (or F420H2) dehydrogenase, subunit C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2]
D Ddes_1884 NADH dehydrogenase (ubiquinone) 30 kDa subunit K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2]
D Ddes_1662 NADH dehydrogenase I, D subunit K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2]
D Ddes_1661 NADH dehydrogenase (quinone) K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D Ddes_1881 respiratory-chain NADH dehydrogenase subunit 1 K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D Ddes_1659 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D Ddes_1658 NADH-ubiquinone oxidoreductase chain 4L K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D Ddes_1657 proton-translocating NADH-quinone oxidoreductase, chain L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D Ddes_1656 proton-translocating NADH-quinone oxidoreductase, chain M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D Ddes_1655 proton-translocating NADH-quinone oxidoreductase, chain N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D Ddes_1531 succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D Ddes_1532 succinate dehydrogenase and fumarate reductase iron-sulfur protein K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D Ddes_1530 fumarate reductase respiratory complex transmembrane subunit K25996 frdC; succinate dehydrogenase subunit C
D Ddes_2196 cytochrome bd ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D Ddes_2195 cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D Ddes_1457 cytochrome c class I K08738 CYC; cytochrome c
D Ddes_2186 ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D Ddes_2188 ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D Ddes_2187 ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D Ddes_2185 ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D Ddes_2189 ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D Ddes_2254 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D Ddes_2183 H+transporting two-sector ATPase B/B' subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D Ddes_2184 H+transporting two-sector ATPase B/B' subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D Ddes_2255 ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D Ddes_1854 Inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D Ddes_0968 Inorganic diphosphatase K15986 ppaC; manganese-dependent inorganic pyrophosphatase [EC:3.6.1.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms
C 00720 Carbon fixation pathways in prokaryotes
C 00680 Methane metabolism [PATH:dds00680]
D Ddes_0555 formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D Ddes_0827 formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D Ddes_1545 molybdopterin oxidoreductase K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D Ddes_0826 4Fe-4S ferredoxin iron-sulfur binding domain protein K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D Ddes_0556 formate dehydrogenase, beta subunit, putative K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D Ddes_2039 4Fe-4S ferredoxin iron-sulfur binding domain protein K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D Ddes_2065 4Fe-4S ferredoxin iron-sulfur binding domain protein K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D Ddes_1543 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K15022 fdhB; formate dehydrogenase (NADP+) beta subunit [EC:1.17.1.10]
D Ddes_0382 carbon-monoxide dehydrogenase, catalytic subunit K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D Ddes_1887 4Fe-4S ferredoxin iron-sulfur binding domain protein K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit
D Ddes_1617 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Ddes_0641 Alanine--glyoxylate transaminase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D Ddes_0856 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29]
D Ddes_2216 Phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Ddes_0131 fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Ddes_0338 predicted phospho-2-dehydro-3-deoxyheptonate aldolase K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10]
D Ddes_1197 Inositol phosphatase/fructose-16-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D Ddes_0753 fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D Ddes_1423 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D Ddes_1157 glutamate synthase alpha subunit domain protein K22082 mgsB; methylamine---glutamate N-methyltransferase subunit B [EC:2.1.1.21]
D Ddes_0554 formylmethanofuran dehydrogenase subunit E region K11261 fwdE; formylmethanofuran dehydrogenase subunit E [EC:1.2.7.12]
D Ddes_0994 formylmethanofuran dehydrogenase subunit E region K11261 fwdE; formylmethanofuran dehydrogenase subunit E [EC:1.2.7.12]
D Ddes_2100 4Fe-4S ferredoxin iron-sulfur binding domain protein K03388 hdrA2; heterodisulfide reductase subunit A2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6]
D Ddes_2099 CoB--CoM heterodisulfide reductase K03389 hdrB2; heterodisulfide reductase subunit B2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6]
D Ddes_2098 heterodisulfide reductase, C subunit K03390 hdrC2; heterodisulfide reductase subunit C2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6]
D Ddes_0296 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D Ddes_0297 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D Ddes_1748 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Ddes_1552 pyruvate phosphate dikinase PEP/pyruvate-binding K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D Ddes_1565 Pyruvate, water dikinase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D Ddes_1568 pyruvate phosphate dikinase PEP/pyruvate-binding K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D Ddes_1644 pyruvate phosphate dikinase PEP/pyruvate-binding K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D Ddes_0561 phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D Ddes_1017 HAD-superfamily hydrolase, subfamily IB (PSPase-like) K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 00910 Nitrogen metabolism [PATH:dds00910]
D Ddes_0616 molybdopterin oxidoreductase K02567 napA; nitrate reductase (cytochrome) [EC:1.9.6.1]
D Ddes_0081 Nitrite reductase (cytochrome; ammonia-forming) K03385 nrfA; nitrite reductase (cytochrome c-552) [EC:1.7.2.2]
D Ddes_0082 NapC/NirT cytochrome c family protein K15876 nrfH; cytochrome c nitrite reductase small subunit
D Ddes_1829 hybrid cluster protein K05601 hcp; hydroxylamine reductase [EC:1.7.99.1]
D Ddes_0977 2-nitropropane dioxygenase NPD K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16]
D Ddes_1152 Glutamate dehydrogenase (NADP(+)) K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D Ddes_1149 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Ddes_1593 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Ddes_1156 ferredoxin-dependent glutamate synthase K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D Ddes_1984 glutamate synthase (NADPH), homotetrameric K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D Ddes_2037 Carbonate dehydratase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:dds00920]
D Ddes_0574 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components K15553 ssuA; sulfonate transport system substrate-binding protein
D Ddes_0573 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein
D Ddes_0572 ABC transporter related K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D Ddes_0454 sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D Ddes_0122 Adenylylsulfate kinase and related kinase-like protein K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D Ddes_0057 phosphoesterase RecJ domain protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
D Ddes_2129 adenylylsulfate reductase, alpha subunit K00394 aprA; adenylylsulfate reductase, subunit A [EC:1.8.99.2]
D Ddes_2130 adenylylsulfate reductase, beta subunit K00395 aprB; adenylylsulfate reductase, subunit B [EC:1.8.99.2]
D Ddes_2295 sulfite reductase, dissimilatory-type alpha subunit K11180 dsrA; dissimilatory sulfite reductase alpha subunit [EC:1.8.1.22]
D Ddes_0921 sulfite reductase, dissimilatory-type alpha subunit K11180 dsrA; dissimilatory sulfite reductase alpha subunit [EC:1.8.1.22]
D Ddes_0920 sulfite reductase, dissimilatory-type beta subunit K11181 dsrB; dissimilatory sulfite reductase beta subunit [EC:1.8.1.22]
D Ddes_2294 sulfite reductase, dissimilatory-type beta subunit K11181 dsrB; dissimilatory sulfite reductase beta subunit [EC:1.8.1.22]
D Ddes_0451 Nitrate reductase gamma subunit K27187 dsrM; [DsrC]-trisulfide reductase subunit M [EC:1.8.5.10]
D Ddes_0450 reductase, iron-sulfur binding subunit, putative K27188 dsrK; [DsrC]-trisulfide reductase subunit K [EC:1.8.5.10]
D Ddes_0449 cytochrome c family protein K27189 dsrJ; [DsrC]-trisulfide reductase subunit J
D Ddes_0448 4Fe-4S ferredoxin iron-sulfur binding domain protein K27190 dsrO; [DsrC]-trisulfide reductase subunit O
D Ddes_0447 Polysulphide reductase NrfD K27191 dsrP; [DsrC]-trisulfide reductase subunit P
D Ddes_1846 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4]
D Ddes_1667 Formate dehydrogenase K08352 phsA; thiosulfate reductase / polysulfide reductase chain A [EC:1.8.5.5]
D Ddes_0279 Serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D Ddes_0149 cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D Ddes_1078 Homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:dds00061]
D Ddes_0458 Acetyl-CoA carboxylase K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D Ddes_1615 acyl carrier protein K02078 acpP; acyl carrier protein
D Ddes_0744 Acyl transferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D Ddes_1613 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D Ddes_1616 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Ddes_1614 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Ddes_0607 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D Ddes_1048 short-chain dehydrogenase/reductase SDR K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D Ddes_1253 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:dds00071]
D Ddes_1253 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Ddes_1943 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D Ddes_1981 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:dds00561]
D Ddes_1860 Glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D Ddes_1981 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Ddes_1347 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D Ddes_1612 fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D Ddes_0104 protein of unknown function DUF205 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D Ddes_1167 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Ddes_0770 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
C 00564 Glycerophospholipid metabolism [PATH:dds00564]
D Ddes_1879 Glycerol-3-phosphate dehydrogenase (NAD(P)(+)) K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D Ddes_1521 glycerol-3-phosphate dehydrogenase, anaerobic, A subunit K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D Ddes_1520 glycerol-3-phosphate dehydrogenase, anaerobic, B subunit K00112 glpB; glycerol-3-phosphate dehydrogenase subunit B [EC:1.1.5.3]
D Ddes_1519 glycerol-3-phosphate dehydrogenase, anaerobic, C subunit K00113 glpC; glycerol-3-phosphate dehydrogenase subunit C
D Ddes_0104 protein of unknown function DUF205 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D Ddes_1167 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Ddes_0770 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D Ddes_0517 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D Ddes_0504 CDP-diacylglycerol/serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D Ddes_0503 phosphatidylserine decarboxylase related protein K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D Ddes_1192 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D Ddes_0497 phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
D Ddes_2360 phospholipase D/Transphosphatidylase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism
C 01040 Biosynthesis of unsaturated fatty acids
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:dds00230]
D Ddes_1209 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Ddes_1451 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D Ddes_0008 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D Ddes_2323 phosphoribosylamine/glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D Ddes_2208 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D Ddes_0976 Phosphoribosylformylglycinamidine synthase K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D Ddes_1913 Phosphoribosylformylglycinamidine synthase K23270 purSL; phosphoribosylformylglycinamidine synthase subunit PurSL [EC:6.3.5.3]
D Ddes_1839 phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D Ddes_2322 phosphoribosylaminoimidazole carboxylase, catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D Ddes_0315 Phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D Ddes_1050 phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D Ddes_0095 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D Ddes_2264 Phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D Ddes_1511 5'-Nucleotidase domain protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D Ddes_0130 stationary-phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D Ddes_0461 inosine guanosine and xanthosine phosphorylase family K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D Ddes_0794 protein of unknown function DUF152 K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D Ddes_1440 hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D Ddes_1805 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D Ddes_0894 Nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D Ddes_1892 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D Ddes_1806 GMP synthase, large subunit K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D Ddes_1249 CMP/dCMP deaminase zinc-binding K01487 guaD; guanine deaminase [EC:3.5.4.3]
D Ddes_1406 Guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D Ddes_1833 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Ddes_0120 deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1]
D Ddes_1536 (p)ppGpp synthetase I, SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D Ddes_1849 adenylate cyclase K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D Ddes_1431 adenylate cyclase K05873 cyaB; adenylate cyclase, class 2 [EC:4.6.1.1]
D Ddes_2266 Adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D Ddes_0200 PfkB domain protein K00856 ADK; adenosine kinase [EC:2.7.1.20]
D Ddes_1956 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D Ddes_0550 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D Ddes_1783 metallophosphoesterase K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]
D Ddes_1183 histidine triad (HIT) protein K19710 E2.7.7.53; ATP adenylyltransferase [EC:2.7.7.53]
D Ddes_0122 Adenylylsulfate kinase and related kinase-like protein K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D Ddes_0454 sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D Ddes_2027 gamma-glutamyltransferase K22602 hpxW; oxamate amidohydrolase [EC:3.5.1.126]
C 00240 Pyrimidine metabolism [PATH:dds00240]
D Ddes_1096 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D Ddes_1097 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D Ddes_1871 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D Ddes_1870 dihydroorotase, multifunctional complex type K01465 URA4; dihydroorotase [EC:3.5.2.3]
D Ddes_2200 dihydroorotate dehydrogenase family protein K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14]
D Ddes_2199 oxidoreductase FAD/NAD(P)-binding domain protein K02823 pyrDII; dihydroorotate dehydrogenase electron transfer subunit
D Ddes_0096 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D Ddes_1407 orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D Ddes_0520 uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D Ddes_0894 Nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D Ddes_0550 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D Ddes_1747 maf protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D Ddes_0975 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D Ddes_0760 cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D Ddes_1511 5'-Nucleotidase domain protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D Ddes_0130 stationary-phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D Ddes_0996 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D Ddes_0906 Uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D Ddes_1833 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Ddes_1618 CMP/dCMP deaminase zinc-binding K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D Ddes_0128 dTMP kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D Ddes_1957 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D Ddes_0584 thymidylate synthase complementing protein ThyX K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:dds00250]
D Ddes_2245 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Ddes_2089 aminotransferase class I and II K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D Ddes_0806 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D Ddes_1020 aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
D Ddes_2339 Asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D Ddes_2055 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D Ddes_0641 Alanine--glyoxylate transaminase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D Ddes_1095 Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D Ddes_1094 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D Ddes_2266 Adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D Ddes_0095 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D Ddes_1871 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D Ddes_0045 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D Ddes_1869 Aldehyde Dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D Ddes_1156 ferredoxin-dependent glutamate synthase K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D Ddes_1984 glutamate synthase (NADPH), homotetrameric K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D Ddes_1152 Glutamate dehydrogenase (NADP(+)) K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D Ddes_1149 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Ddes_1593 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Ddes_1096 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D Ddes_1097 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D Ddes_0048 Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D Ddes_0976 Phosphoribosylformylglycinamidine synthase K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D Ddes_2371 glucosamine/fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D Ddes_0008 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:dds00260]
D Ddes_1141 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Ddes_2274 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Ddes_2314 Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D Ddes_0105 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D Ddes_1617 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Ddes_0641 Alanine--glyoxylate transaminase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D Ddes_0856 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29]
D Ddes_1860 Glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D Ddes_0561 phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D Ddes_1017 HAD-superfamily hydrolase, subfamily IB (PSPase-like) K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D Ddes_0788 Glycine dehydrogenase (decarboxylating) K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D Ddes_0789 Glycine dehydrogenase (decarboxylating) K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2]
D Ddes_0786 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D Ddes_0151 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Ddes_2347 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Ddes_1416 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Ddes_0152 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D Ddes_0787 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D Ddes_2348 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D Ddes_1417 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D Ddes_0504 CDP-diacylglycerol/serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D Ddes_2309 L-serine dehydratase 1 K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D Ddes_1763 threonine dehydratase, biosynthetic K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D Ddes_0351 aspartate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
D Ddes_1587 tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D Ddes_1588 tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D Ddes_0583 tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:dds00270]
D Ddes_0279 Serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D Ddes_0149 cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D Ddes_1442 homocysteine S-methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D Ddes_2287 Methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D Ddes_0794 protein of unknown function DUF152 K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D Ddes_1931 amidohydrolase K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28]
D Ddes_2312 translation initiation factor, aIF-2BI family K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23]
D Ddes_0271 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Ddes_0272 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Ddes_0039 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D Ddes_1141 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Ddes_2274 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Ddes_2314 Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D Ddes_1078 Homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D Ddes_1468 O-acetylhomoserine/O-acetylserine sulfhydrylase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D Ddes_1040 O-acetylhomoserine/O-acetylserine sulfhydrylase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D Ddes_2275 aminotransferase class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Ddes_2143 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Ddes_2245 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Ddes_2089 aminotransferase class I and II K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D Ddes_0351 aspartate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
D Ddes_0339 pyridoxal phosphate-dependent enzyme, D-cysteine desulfhydrase family K05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15]
D Ddes_2374 SAF domain protein K16845 suyA; (2R)-sulfolactate sulfo-lyase subunit alpha [EC:4.4.1.24]
D Ddes_2375 Altronate dehydratase K16846 suyB; (2R)-sulfolactate sulfo-lyase subunit beta [EC:4.4.1.24]
D Ddes_2309 L-serine dehydratase 1 K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
C 00280 Valine, leucine and isoleucine degradation [PATH:dds00280]
D Ddes_2275 aminotransferase class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Ddes_2143 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Ddes_0151 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Ddes_2347 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Ddes_1416 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Ddes_1320 2-hydroxy-3-oxopropionate reductase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
D Ddes_1981 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:dds00290]
D Ddes_1763 threonine dehydratase, biosynthetic K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D Ddes_0506 homoaconitate hydratase family protein K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D Ddes_0507 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D Ddes_0509 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D Ddes_1903 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Ddes_1904 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D Ddes_1905 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D Ddes_2110 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D Ddes_2275 aminotransferase class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Ddes_2143 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Ddes_0505 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:dds00300]
D Ddes_2314 Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D Ddes_1141 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Ddes_2274 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Ddes_1942 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D Ddes_1685 dihydrodipicolinate synthetase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D Ddes_1424 Dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D Ddes_1958 acetylornithine and succinylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D Ddes_1933 peptidase M20 K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D Ddes_1150 Diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D Ddes_1151 aminotransferase class I and II K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83]
D Ddes_1595 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D Ddes_1119 diaminopimelate dehydrogenase K03340 dapdh; diaminopimelate dehydrogenase [EC:1.4.1.16]
D Ddes_0125 Saccharopine dehydrogenase K00290 LYS1; saccharopine dehydrogenase (NAD+, L-lysine forming) [EC:1.5.1.7]
D Ddes_1108 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D Ddes_1109 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:dds00310]
D Ddes_0125 Saccharopine dehydrogenase K00290 LYS1; saccharopine dehydrogenase (NAD+, L-lysine forming) [EC:1.5.1.7]
D Ddes_0151 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Ddes_2347 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Ddes_1416 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Ddes_0351 aspartate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
D Ddes_1869 Aldehyde Dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D Ddes_1981 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00220 Arginine biosynthesis [PATH:dds00220]
D Ddes_1081 aspartate/ornithine carbamoyltransferase Asp/Orn-binding region K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D Ddes_1676 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D Ddes_1095 Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D Ddes_1094 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D Ddes_0048 Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D Ddes_0976 Phosphoribosylformylglycinamidine synthase K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D Ddes_1149 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Ddes_1593 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Ddes_1152 Glutamate dehydrogenase (NADP(+)) K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D Ddes_2245 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Ddes_2089 aminotransferase class I and II K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D Ddes_1675 GCN5-related N-acetyltransferase K00619 argA; amino-acid N-acetyltransferase [EC:2.3.1.1]
D Ddes_2068 arginine biosynthesis bifunctional protein ArgJ K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
D Ddes_0190 acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D Ddes_0802 N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D Ddes_1958 acetylornithine and succinylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
C 00330 Arginine and proline metabolism [PATH:dds00330]
D Ddes_0901 arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19]
D Ddes_0074 agmatinase K01480 speB; agmatinase [EC:3.5.3.11]
D Ddes_0124 carboxynorspermidine decarboxylase K13747 nspC; carboxynorspermidine decarboxylase [EC:4.1.1.96]
D Ddes_1981 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Ddes_1689 Aldehyde Dehydrogenase K09472 puuC; 4-(gamma-glutamylamino)butanal dehydrogenase [EC:1.2.1.99]
D Ddes_0893 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D Ddes_2247 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D Ddes_0441 gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D Ddes_2245 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Ddes_2089 aminotransferase class I and II K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D Ddes_1690 proline racemase K01777 prdF; proline racemase [EC:5.1.1.4]
C 00340 Histidine metabolism [PATH:dds00340]
D Ddes_0360 ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D Ddes_0361 Phosphoribosyl-AMP cyclohydrolase K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19]
D Ddes_1811 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D Ddes_0090 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D Ddes_0091 imidazoleglycerol phosphate synthase, cyclase subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D Ddes_1809 Imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D Ddes_0761 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Ddes_1683 Inositol-phosphate phosphatase K05602 hisN; histidinol-phosphatase [EC:3.1.3.15]
D Ddes_0366 histidinol phosphate phosphatase HisJ family K04486 E3.1.3.15B; histidinol-phosphatase (PHP family) [EC:3.1.3.15]
D Ddes_1985 histidinol phosphate phosphatase HisJ family K04486 E3.1.3.15B; histidinol-phosphatase (PHP family) [EC:3.1.3.15]
D Ddes_1051 Histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D Ddes_1981 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00350 Tyrosine metabolism [PATH:dds00350]
D Ddes_2245 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Ddes_2089 aminotransferase class I and II K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D Ddes_0761 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Ddes_1943 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D Ddes_1869 Aldehyde Dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00360 Phenylalanine metabolism [PATH:dds00360]
D Ddes_0559 Phenylacetate--CoA ligase K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30]
D Ddes_2338 Phenylacetate--CoA ligase K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30]
D Ddes_1737 thioesterase superfamily protein K02614 paaI; acyl-CoA thioesterase [EC:3.1.2.-]
D Ddes_2245 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Ddes_2089 aminotransferase class I and II K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D Ddes_0761 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00380 Tryptophan metabolism [PATH:dds00380]
D Ddes_0151 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Ddes_2347 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Ddes_1416 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Ddes_1981 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Ddes_1494 Catalase K03781 katE; catalase [EC:1.11.1.6]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:dds00400]
D Ddes_0338 predicted phospho-2-dehydro-3-deoxyheptonate aldolase K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10]
D Ddes_0337 3-dehydroquinate synthase K11646 K11646; 3-dehydroquinate synthase II [EC:1.4.1.24]
D Ddes_2097 3-dehydroquinate dehydratase, type II K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D Ddes_1973 Shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D Ddes_2181 Shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D Ddes_0335 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D Ddes_2288 Chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D Ddes_1592 Anthranilate synthase K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D Ddes_1591 anthranilate phosphoribosyltransferase K13497 trpGD; anthranilate synthase/phosphoribosyltransferase [EC:4.1.3.27 2.4.2.18]
D Ddes_1589 Phosphoribosylanthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D Ddes_1590 Indole-3-glycerol-phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D Ddes_1587 tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D Ddes_1588 tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D Ddes_0583 tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D Ddes_0336 chorismate mutase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D Ddes_0334 Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D Ddes_2245 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Ddes_2089 aminotransferase class I and II K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D Ddes_0761 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:dds00410]
D Ddes_0982 Aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D Ddes_0045 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D Ddes_1981 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Ddes_2286 pantoate/beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
C 00430 Taurine and hypotaurine metabolism [PATH:dds00430]
D Ddes_0045 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D Ddes_0218 aminotransferase class-III K03851 tpa; taurine-pyruvate aminotransferase [EC:2.6.1.77]
D Ddes_0220 sulfoacetaldehyde acetyltransferase K03852 xsc; sulfoacetaldehyde acetyltransferase [EC:2.3.3.15]
D Ddes_0297 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D Ddes_0296 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D Ddes_1436 Formate C-acetyltransferase K25261 islA; isethionate sulfite-lyase [EC:4.4.1.38]
D Ddes_1435 glycyl-radical enzyme activating protein family K25262 islB; isethionate sulfite-lyase activating enzyme
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:dds00450]
D Ddes_1442 homocysteine S-methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D Ddes_0114 thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D Ddes_1200 thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D Ddes_0454 sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D Ddes_0689 selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D Ddes_1740 L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D Ddes_1420 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:dds00460]
D Ddes_2339 Asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D Ddes_1617 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:dds00470]
D Ddes_0171 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D Ddes_0872 D-alanine/D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Ddes_0351 aspartate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
D Ddes_0048 Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D Ddes_0976 Phosphoribosylformylglycinamidine synthase K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D Ddes_0088 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D Ddes_1111 UDP-N-acetylmuramoylalanine/D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D Ddes_1020 aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
D Ddes_0339 pyridoxal phosphate-dependent enzyme, D-cysteine desulfhydrase family K05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15]
D Ddes_1150 Diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D Ddes_1595 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D Ddes_1690 proline racemase K01777 prdF; proline racemase [EC:5.1.1.4]
D Ddes_1977 conserved hypothetical protein K01780 cntK; histidine racemase [EC:5.1.1.24]
C 00480 Glutathione metabolism [PATH:dds00480]
D Ddes_2206 Leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D Ddes_0101 isocitrate/isopropylmalate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis [PATH:dds00540]
D Ddes_2047 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D Ddes_1285 phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D Ddes_1391 rfaE bifunctional protein K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D Ddes_1837 D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D Ddes_1920 ADP-L-glycero-D-manno-heptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D Ddes_1756 glycosyl transferase family 9 K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:dds00541]
D Ddes_1712 Nucleotidyl transferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D Ddes_1950 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Ddes_2048 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Ddes_2202 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Ddes_1145 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D Ddes_0025 NAD-dependent epimerase/dehydratase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D Ddes_0541 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Ddes_0540 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Ddes_0542 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D Ddes_0875 polysaccharide biosynthesis domain-containing protein K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D Ddes_1128 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D Ddes_0877 glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D Ddes_0876 CDP-glucose 4,6-dehydratase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45]
D Ddes_0413 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D Ddes_0414 Phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D Ddes_0412 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D Ddes_0411 NAD-dependent epimerase/dehydratase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D Ddes_2212 DegT/DnrJ/EryC1/StrS aminotransferase K13010 per; perosamine synthetase [EC:2.6.1.102]
D Ddes_1696 UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D Ddes_1015 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D Ddes_1910 nucleotide sugar dehydrogenase K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
D Ddes_0109 NAD-dependent epimerase/dehydratase K02473 wbpP; UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine 4-epimerase [EC:5.1.3.7 5.1.3.-]
C 00550 Peptidoglycan biosynthesis [PATH:dds00550]
D Ddes_1845 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D Ddes_1115 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D Ddes_1114 UDP-N-acetylmuramate/alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D Ddes_1111 UDP-N-acetylmuramoylalanine/D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D Ddes_1108 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D Ddes_0872 D-alanine/D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Ddes_1109 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D Ddes_0518 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D Ddes_1418 undecaprenol kinase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Ddes_1110 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D Ddes_1113 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D Ddes_1918 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Ddes_1293 penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D Ddes_0161 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D Ddes_1107 Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D Ddes_1041 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
C 00552 Teichoic acid biosynthesis [PATH:dds00552]
D Ddes_1418 undecaprenol kinase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Ddes_1016 LicD family protein K07271 licD; lipopolysaccharide cholinephosphotransferase [EC:2.7.8.-]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:dds00543]
D Ddes_2056 glycosyl transferase group 1 K16703 wcaL; colanic acid/amylovoran/stewartan biosynthesis glycosyltransferase WcaL/AmsK/CpsK [EC:2.4.-.-]
D Ddes_0180 membrane bound O-acyl transferase MBOAT family protein K19294 algI; alginate O-acetyltransferase complex protein AlgI
D Ddes_0279 Serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:dds00730]
D Ddes_0628 thiamine biosynthesis protein ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D Ddes_0699 phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D Ddes_2168 UBA/THIF-type NAD/FAD binding protein K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
D Ddes_1075 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Ddes_1505 biotin and thiamin synthesis associated K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19]
D Ddes_2167 thiazole biosynthesis protein ThiH K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19]
D Ddes_1946 Radical SAM domain protein K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19]
D Ddes_0956 deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D Ddes_2166 thiazole biosynthesis family protein K03149 thiG; thiazole synthase [EC:2.8.1.10]
D Ddes_0467 Hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D Ddes_0209 thiamine-phosphate pyrophosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D Ddes_0070 thiamine-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D Ddes_1956 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:dds00740]
D Ddes_2136 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D Ddes_1619 riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D Ddes_2290 3,4-dihydroxy-2-butanone 4-phosphate synthase K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12]
D Ddes_1621 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D Ddes_1620 riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D Ddes_0364 riboflavin biosynthesis protein RibF K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D Ddes_0467 Hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D Ddes_2278 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism [PATH:dds00750]
D Ddes_0105 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D Ddes_1898 pyridoxine biosynthesis protein K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6]
D Ddes_1897 SNO glutamine amidotransferase K08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6]
C 00760 Nicotinate and nicotinamide metabolism [PATH:dds00760]
D Ddes_0806 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D Ddes_0807 quinolinate synthetase complex, A subunit K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D Ddes_0808 nicotinate-nucleotide pyrophosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D Ddes_0461 inosine guanosine and xanthosine phosphorylase family K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D Ddes_1511 5'-Nucleotidase domain protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D Ddes_0130 stationary-phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D Ddes_0440 cytidyltransferase-related domain protein K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D Ddes_0550 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D Ddes_0752 NAD+ synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D Ddes_1284 ATP-NAD/AcoX kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D Ddes_0173 NAD(P)(+) transhydrogenase (AB-specific) K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D Ddes_0174 putative NADPH-NAD transhydrogenase alpha subunit K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D Ddes_0214 NAD(P)(+) transhydrogenase (AB-specific) K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D Ddes_0215 putative NADPH-NAD transhydrogenase alpha subunit K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D Ddes_0216 NAD(P)(+) transhydrogenase (AB-specific) K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
D Ddes_0175 NAD(P)(+) transhydrogenase (AB-specific) K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
D Ddes_1869 Aldehyde Dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:dds00770]
D Ddes_1903 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Ddes_1904 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D Ddes_1905 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D Ddes_2110 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D Ddes_0075 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D Ddes_2286 pantoate/beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D Ddes_2217 putative transcriptional acitvator, Baf family K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D Ddes_0141 phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D Ddes_0550 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D Ddes_2035 pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D Ddes_1144 holo-acyl-carrier-protein synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D Ddes_1329 4'-phosphopantetheinyl transferase K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-]
D Ddes_2275 aminotransferase class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Ddes_2143 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Ddes_0982 Aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D Ddes_1981 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00780 Biotin metabolism [PATH:dds00780]
D Ddes_1616 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Ddes_1614 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Ddes_0607 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D Ddes_1048 short-chain dehydrogenase/reductase SDR K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D Ddes_0424 6-carboxyhexanoate--CoA ligase K01906 bioW; 6-carboxyhexanoate--CoA ligase [EC:6.2.1.14]
D Ddes_0423 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D Ddes_1300 adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D Ddes_1504 Radical SAM domain protein K01012 bioB; biotin synthase [EC:2.8.1.6]
D Ddes_1301 Biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6]
D Ddes_1554 biotin/acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:dds00785]
D Ddes_2075 lipoate-protein ligase B K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D Ddes_2076 lipoic acid synthetase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D Ddes_0785 lipoyltransferase and lipoate-protein ligase K03800 lplA; lipoate---protein ligase [EC:6.3.1.20]
D Ddes_0151 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Ddes_2347 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Ddes_1416 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Ddes_0788 Glycine dehydrogenase (decarboxylating) K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D Ddes_0789 Glycine dehydrogenase (decarboxylating) K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2]
D Ddes_0786 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D Ddes_0152 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D Ddes_0787 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D Ddes_2348 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D Ddes_1417 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:dds00790]
D Ddes_1766 protein of unknown function DUF198 K09007 folE2; GTP cyclohydrolase IB [EC:3.5.4.16]
D Ddes_1186 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D Ddes_1716 dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D Ddes_1739 FolC bifunctional protein K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D Ddes_2136 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D Ddes_1485 queuosine biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D Ddes_1083 exsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D Ddes_0653 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D Ddes_1722 metallo-beta-lactamase family protein K06897 K06897; 7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase [EC:2.5.1.105]
D Ddes_1269 molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D Ddes_0500 molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D Ddes_0652 molybdenum cofactor synthesis domain protein K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D Ddes_0828 molybdenum cofactor synthesis domain protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D Ddes_1771 molybdenum cofactor synthesis domain protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D Ddes_1772 molybdenum cofactor synthesis domain protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D Ddes_2050 MoeA domain protein domain I and II K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D Ddes_0553 molybdopterin-guanine dinucleotide biosynthesis protein A, putative K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:dds00670]
D Ddes_2215 Methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D Ddes_1617 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Ddes_2208 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D Ddes_2264 Phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D Ddes_0012 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D Ddes_0786 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D Ddes_1442 homocysteine S-methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D Ddes_0584 thymidylate synthase complementing protein ThyX K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
D Ddes_2008 Methylenetetrahydrofolate reductase (NAD(P)H) K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D Ddes_0793 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:dds00860]
D Ddes_0192 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Ddes_1769 glutamyl-tRNA synthetase class Ic K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Ddes_0959 glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D Ddes_2017 glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D Ddes_0288 Porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D Ddes_1287 porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D Ddes_2207 uroporphyrin-III C-methyltransferase K13542 cobA-hemD; uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75]
D Ddes_0961 siroheme synthase K24866 sirC; precorrin-2 dehydrogenase [EC:1.3.1.76]
D Ddes_0286 putative transcriptional regulator, AsnC family K22225 ahbAB; siroheme decarboxylase [EC:4.1.1.111]
D Ddes_2018 putative transcriptional regulator, AsnC family K22225 ahbAB; siroheme decarboxylase [EC:4.1.1.111]
D Ddes_0289 Radical SAM domain protein K22226 ahbC; Fe-coproporphyrin III synthase
D Ddes_0287 Radical SAM domain protein K22227 ahbD; AdoMet-dependent heme synthase [EC:1.3.98.6]
D Ddes_2334 anaerobic cobalt chelatase K02190 cbiK; sirohydrochlorin cobaltochelatase [EC:4.99.1.3]
D Ddes_1129 anaerobic cobalt chelatase K02190 cbiK; sirohydrochlorin cobaltochelatase [EC:4.99.1.3]
D Ddes_0799 precorrin-2 C20-methyltransferase K03394 cobI-cbiL; precorrin-2/cobalt-factor-2 C20-methyltransferase [EC:2.1.1.130 2.1.1.151]
D Ddes_2014 precorrin-3B C17-methyltransferase K05934 cobJ; precorrin-3B C17-methyltransferase / cobalt-factor III methyltransferase [EC:2.1.1.131 2.1.1.272]
D Ddes_1980 precorrin-4 C11-methyltransferase K05936 cobM; precorrin-4/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271]
D Ddes_2015 cobalamin (vitamin B12) biosynthesis CbiG protein K02189 cbiG; cobalt-precorrin 5A hydrolase [EC:3.7.1.12]
D Ddes_1978 cobalamin (vitamin B12) biosynthesis CbiD protein K02188 cbiD; cobalt-precorrin-5B (C1)-methyltransferase [EC:2.1.1.195]
D Ddes_1979 precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit K00595 cobL-cbiET; precorrin-6B C5,15-methyltransferase / cobalt-precorrin-6B C5,C15-methyltransferase [EC:2.1.1.132 2.1.1.289 2.1.1.196]
D Ddes_0027 Precorrin-8X methylmutase CbiC/CobH K06042 cobH-cbiC; precorrin-8X/cobalt-precorrin-8 methylmutase [EC:5.4.99.61 5.4.99.60]
D Ddes_0028 CobB/CobQ domain protein glutamine amidotransferase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11]
D Ddes_2263 cobyrinic acid a,c-diamide synthase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11]
D Ddes_1842 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D Ddes_2177 cobyric acid synthase CobQ K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10]
D Ddes_2140 cobalamin biosynthesis protein CbiB K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
D Ddes_0701 Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase-like protein K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62]
D Ddes_2258 cobalamin-5-phosphate synthase CobS K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26]
D Ddes_0891 nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21]
D Ddes_1387 Ferritin Dps family protein K03594 bfr; bacterioferritin [EC:1.16.3.1]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:dds00130]
D Ddes_0651 4-hydroxybenzoate polyprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D Ddes_0751 Carboxylyase-related protein K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D Ddes_2278 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D Ddes_1908 ubiquinone/menaquinone biosynthesis methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D Ddes_1345 isochorismate synthase K01851 pchA; salicylate biosynthesis isochorismate synthase [EC:5.4.4.2]
D Ddes_0874 UbiA prenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D Ddes_1281 protein of unknown function DUF178 K11782 mqnA; chorismate dehydratase [EC:4.2.1.151]
D Ddes_1279 Radical SAM domain protein K18285 mqnE; aminodeoxyfutalosine synthase [EC:2.5.1.120]
D Ddes_1874 amidohydrolase K20810 mqnX; aminodeoxyfutalosine deaminase [EC:3.5.4.40]
D Ddes_1911 purine or other phosphorylase family 1 K11783 mqnB; futalosine hydrolase [EC:3.2.2.26]
D Ddes_1280 Radical SAM domain protein K11784 mqnC; cyclic dehypoxanthinyl futalosine synthase [EC:1.21.98.1]
D Ddes_1278 protein of unknown function DUF191 K11785 mqnD; 1,4-dihydroxy-6-naphthoate synthase [EC:1.14.-.-]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:dds00900]
D Ddes_0956 deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D Ddes_0516 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D Ddes_1252 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K12506 ispDF; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12]
D Ddes_1450 4-diphosphocytidyl-2C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D Ddes_0950 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D Ddes_2083 hydroxymethylbutenyl pyrophosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D Ddes_2278 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D Ddes_1174 NUDIX hydrolase K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2]
D Ddes_0955 Polyprenyl synthetase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D Ddes_1912 Polyprenyl synthetase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D Ddes_0518 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
D Ddes_1981 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00907 Pinene, camphor and geraniol degradation
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D Ddes_0480 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:dds00523]
D Ddes_0541 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Ddes_0540 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Ddes_0542 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D Ddes_0875 polysaccharide biosynthesis domain-containing protein K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D Ddes_1128 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 01054 Nonribosomal peptide structures [PATH:dds01054]
D Ddes_1020 aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
C 01053 Biosynthesis of siderophore group nonribosomal peptides [PATH:dds01053]
D Ddes_1345 isochorismate synthase K01851 pchA; salicylate biosynthesis isochorismate synthase [EC:5.4.4.2]
D Ddes_1346 chorismate mutase related enzyme K04782 pchB; isochorismate pyruvate lyase [EC:4.2.99.21]
C 01055 Biosynthesis of vancomycin group antibiotics
D Ddes_0540 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis [PATH:dds00332]
D Ddes_2247 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D Ddes_0441 gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:dds00261]
D Ddes_0454 sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D Ddes_1141 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Ddes_2274 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Ddes_1942 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D Ddes_1685 dihydrodipicolinate synthetase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D Ddes_1424 Dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:dds00521]
D Ddes_1390 Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D Ddes_1209 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Ddes_1173 Inositol-phosphate phosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D Ddes_0541 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Ddes_0540 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Ddes_0542 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D Ddes_0875 polysaccharide biosynthesis domain-containing protein K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D Ddes_1128 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D Ddes_1390 Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:dds00525]
D Ddes_0541 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Ddes_0540 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:dds00401]
D Ddes_0334 Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D Ddes_2245 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Ddes_2089 aminotransferase class I and II K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D Ddes_0761 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D Ddes_1592 Anthranilate synthase K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D Ddes_0744 Acyl transferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D Ddes_1614 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Ddes_1048 short-chain dehydrogenase/reductase SDR K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D Ddes_1615 acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites
D Ddes_2287 Methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation
C 00627 Aminobenzoate degradation [PATH:dds00627]
D Ddes_1705 thiamine pyrophosphate protein TPP binding domain protein K01576 mdlC; benzoylformate decarboxylase [EC:4.1.1.7]
D Ddes_2278 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D Ddes_1297 conserved hypothetical protein K22960 lpdD; gallate decarboxylase subunit D
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation [PATH:dds00625]
D Ddes_1943 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D Ddes_1981 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation
C 00633 Nitrotoluene degradation [PATH:dds00633]
D Ddes_0836 nickel-dependent hydrogenase large subunit K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6]
D Ddes_0837 hydrogenase (NiFe) small subunit HydA K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]
D Ddes_0382 carbon-monoxide dehydrogenase, catalytic subunit K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D Ddes_1887 4Fe-4S ferredoxin iron-sulfur binding domain protein K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit
D Ddes_2295 sulfite reductase, dissimilatory-type alpha subunit K11180 dsrA; dissimilatory sulfite reductase alpha subunit [EC:1.8.1.22]
D Ddes_0921 sulfite reductase, dissimilatory-type alpha subunit K11180 dsrA; dissimilatory sulfite reductase alpha subunit [EC:1.8.1.22]
D Ddes_0920 sulfite reductase, dissimilatory-type beta subunit K11181 dsrB; dissimilatory sulfite reductase beta subunit [EC:1.8.1.22]
D Ddes_2294 sulfite reductase, dissimilatory-type beta subunit K11181 dsrB; dissimilatory sulfite reductase beta subunit [EC:1.8.1.22]
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation
C 00791 Atrazine degradation
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation [PATH:dds00626]
D Ddes_1943 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:dds03020]
D Ddes_1636 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D Ddes_1637 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D Ddes_0686 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D Ddes_2161 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:dds03010]
D Ddes_1207 RNA binding S1 domain protein K02945 RP-S1; small subunit ribosomal protein S1
D Ddes_2333 ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D Ddes_0346 ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D Ddes_0666 ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D Ddes_0685 ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D Ddes_0677 ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D Ddes_2024 ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D Ddes_2070 ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D Ddes_0674 ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D Ddes_1063 ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D Ddes_0659 ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D Ddes_0684 ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D Ddes_2071 ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D Ddes_0683 ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D Ddes_0673 ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D Ddes_0055 ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D Ddes_1803 ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D Ddes_0669 ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D Ddes_2023 ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D Ddes_0664 ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D Ddes_0917 ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D Ddes_1089 ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D Ddes_1633 ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D Ddes_0663 ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D Ddes_0661 ribosomal protein L4/L1e K02926 RP-L4; large subunit ribosomal protein L4
D Ddes_0672 ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D Ddes_0675 ribosomal protein L6 signature 1 K02933 RP-L6; large subunit ribosomal protein L6
D Ddes_1635 ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D Ddes_2022 ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D Ddes_1634 ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D Ddes_1632 ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D Ddes_1062 ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D Ddes_0670 ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D Ddes_0679 ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D Ddes_0667 ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D Ddes_0687 ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D Ddes_0676 ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D Ddes_1790 ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D Ddes_0487 ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D Ddes_2250 ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D Ddes_0665 ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D Ddes_0662 Ribosomal protein L25/L23 K02892 RP-L23; large subunit ribosomal protein L23
D Ddes_0671 ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D Ddes_1452 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 K02897 RP-L25; large subunit ribosomal protein L25
D Ddes_2249 ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D Ddes_1384 ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D Ddes_0668 ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D Ddes_0678 ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D Ddes_2301 ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D Ddes_1611 ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D Ddes_1629 ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D Ddes_1970 ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D Ddes_0488 ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D Ddes_0682 ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D Ddes_R0059 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Ddes_R0007 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Ddes_R0041 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Ddes_R0010 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Ddes_R0038 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Ddes_R0056 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Ddes_R0012 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Ddes_R0054 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Ddes_R0036 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Ddes_R0055 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Ddes_R0037 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Ddes_R0011 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:dds00970]
D Ddes_R0017 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Ddes_R0066 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Ddes_R0009 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Ddes_R0039 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Ddes_R0057 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Ddes_R0067 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Ddes_R0026 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Ddes_R0033 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Ddes_R0053 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Ddes_R0024 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D Ddes_R0002 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D Ddes_R0020 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D Ddes_R0046 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D Ddes_R0028 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D Ddes_R0027 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Ddes_R0035 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Ddes_R0048 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Ddes_R0019 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Ddes_R0021 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Ddes_R0018 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Ddes_R0051 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Ddes_R0063 tRNA-His K14226 tRNA-His; tRNA His
D Ddes_R0008 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D Ddes_R0040 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D Ddes_R0058 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D Ddes_R0029 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Ddes_R0023 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Ddes_R0016 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Ddes_R0013 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Ddes_R0043 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Ddes_R0030 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Ddes_R0004 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Ddes_R0045 tRNA-Met K14230 tRNA-Met; tRNA Met
D Ddes_R0068 tRNA-Met K14230 tRNA-Met; tRNA Met
D Ddes_R0065 tRNA-Met K14230 tRNA-Met; tRNA Met
D Ddes_R0006 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D Ddes_R0042 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Ddes_R0064 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Ddes_R0044 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Ddes_R0014 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Ddes_R0005 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Ddes_R0031 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Ddes_R0001 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Ddes_R0022 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Ddes_R0062 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Ddes_R0049 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Ddes_R0052 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D Ddes_R0050 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D Ddes_R0047 tRNA-Val K14237 tRNA-Val; tRNA Val
D Ddes_R0003 tRNA-Val K14237 tRNA-Val; tRNA Val
D Ddes_R0015 tRNA-Val K14237 tRNA-Val; tRNA Val
D Ddes_R0061 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D Ddes_0192 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Ddes_1769 glutamyl-tRNA synthetase class Ic K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Ddes_2154 glutamyl-tRNA(Gln) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D Ddes_1282 glutamyl-tRNA(Gln) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D Ddes_2153 glutamyl-tRNA(Gln) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D Ddes_0267 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D Ddes_0290 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Ddes_0010 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Ddes_2273 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D Ddes_0915 glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D Ddes_0916 glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D Ddes_0490 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D Ddes_2307 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D Ddes_1740 L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D Ddes_1447 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Ddes_1420 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Ddes_0012 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D Ddes_2073 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D Ddes_1623 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Ddes_0385 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D Ddes_0620 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D Ddes_0743 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Ddes_0951 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Ddes_0009 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Ddes_0486 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D Ddes_0484 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D Ddes_0352 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Ddes_0032 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:dds03060]
D Ddes_0680 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D Ddes_1630 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D Ddes_1177 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D Ddes_1929 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D Ddes_1928 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D Ddes_1930 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D Ddes_1967 YidC translocase/secretase K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Ddes_1709 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D Ddes_1804 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D Ddes_R0025 ffs; SRP RNA; RNA component of signal recognitionparti cle K01983 ffs; SRP RNA
D Ddes_0656 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D Ddes_1121 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA
D Ddes_1724 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA
D Ddes_1807 twin-arginine translocation protein, TatB subunit K03117 tatB; sec-independent protein translocase protein TatB
D Ddes_1808 Sec-independent protein translocase, TatC subunit K03118 tatC; sec-independent protein translocase protein TatC
D Ddes_0282 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D Ddes_0386 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:dds04122]
D Ddes_1075 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Ddes_0592 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D Ddes_0292 thiamine biosynthesis protein K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D Ddes_1269 molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D Ddes_1774 thiamineS protein K03636 moaD; sulfur-carrier protein
D Ddes_1773 UBA/THIF-type NAD/FAD binding protein K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D Ddes_0500 molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D Ddes_0652 molybdenum cofactor synthesis domain protein K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D Ddes_2165 thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein
D Ddes_0034 hypothetical protein K03154 thiS; sulfur carrier protein
D Ddes_2168 UBA/THIF-type NAD/FAD binding protein K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
C 03050 Proteasome
C 03018 RNA degradation [PATH:dds03018]
D Ddes_0791 ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12]
D Ddes_2216 Phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Ddes_0054 Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D Ddes_0737 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D Ddes_0362 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D Ddes_1725 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D Ddes_1456 transcription termination factor Rho K03628 rho; transcription termination factor Rho
D Ddes_1693 RNA binding metal dependent phosphohydrolase K18682 rny; ribonucrease Y [EC:3.1.-.-]
D Ddes_0864 beta-lactamase domain protein K12574 rnj; ribonuclease J [EC:3.1.-.-]
D Ddes_1423 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D Ddes_2151 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D Ddes_1548 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Ddes_0446 metal dependent phosphohydrolase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:dds03030]
D Ddes_1582 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Ddes_1233 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Ddes_2144 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Ddes_2267 DNA polymerase III, delta prime subunit, putative K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Ddes_1624 DNA polymerase III delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Ddes_0004 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Ddes_2021 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D Ddes_1086 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D Ddes_0455 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Ddes_0037 Ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D Ddes_1791 Ribonuclease H K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D Ddes_1425 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:dds03410]
D Ddes_0198 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D Ddes_0064 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D Ddes_1800 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D Ddes_1159 HhH-GPD family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D Ddes_0881 exodeoxyribonuclease III Xth K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D Ddes_1409 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D Ddes_1425 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:dds03420]
D Ddes_0910 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D Ddes_0601 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
D Ddes_1426 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
D Ddes_0581 excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C
D Ddes_0071 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Ddes_1425 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:dds03430]
D Ddes_1181 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D Ddes_1087 Smr protein/MutS2 K07456 mutS2; DNA mismatch repair protein MutS2
D Ddes_2319 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Ddes_0071 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Ddes_0952 exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D Ddes_0954 Exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D Ddes_1409 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D Ddes_0455 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Ddes_1233 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Ddes_0004 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Ddes_2144 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Ddes_1624 DNA polymerase III delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Ddes_2267 DNA polymerase III, delta prime subunit, putative K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Ddes_1582 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Ddes_1425 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:dds03440]
D Ddes_1409 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D Ddes_0455 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Ddes_0914 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D Ddes_2147 recombination protein RecR K06187 recR; recombination protein RecR
D Ddes_0291 recA protein K03553 recA; recombination protein RecA
D Ddes_1268 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D Ddes_1267 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D Ddes_0740 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D Ddes_2289 helicase, RecD/TraA family K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D Ddes_1233 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Ddes_0004 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Ddes_2144 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Ddes_1624 DNA polymerase III delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Ddes_2267 DNA polymerase III, delta prime subunit, putative K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Ddes_1582 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Ddes_1711 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus and Lyssavirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:dds02010]
D Ddes_1778 ABC transporter, periplasmic substrate-binding protein K05772 tupA; tungstate transport system substrate-binding protein
D Ddes_1777 binding-protein-dependent transport systems inner membrane component K05773 tupB; tungstate transport system permease protein
D Ddes_1776 ABC transporter related K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6]
D Ddes_0574 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components K15553 ssuA; sulfonate transport system substrate-binding protein
D Ddes_0573 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein
D Ddes_0572 ABC transporter related K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D Ddes_0168 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D Ddes_0577 putative molybdenum ABC transporter, solute-binding protein K02020 modA; molybdate transport system substrate-binding protein
D Ddes_0169 molybdate ABC transporter, inner membrane subunit K02018 modB; molybdate transport system permease protein
D Ddes_0170 ABC transporter related K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D Ddes_1986 ABC transporter related K05776 modF; molybdate transport system ATP-binding protein
D Ddes_0822 Substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein
D Ddes_0823 binding-protein-dependent transport systems inner membrane component K02001 proW; glycine betaine/proline transport system permease protein
D Ddes_0824 glycine betaine/L-proline ABC transporter, ATPase subunit K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D Ddes_0533 toluene tolerance family protein K07323 mlaC; phospholipid transport system substrate-binding protein
D Ddes_0534 Mammalian cell entry related domain protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D Ddes_1056 Mammalian cell entry related domain protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D Ddes_0741 protein of unknown function DUF140 K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D Ddes_1058 protein of unknown function DUF140 K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D Ddes_0535 ABC transporter related K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D Ddes_1057 ABC transporter related K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D Ddes_1947 basic membrane lipoprotein K07335 bmpA; basic membrane protein A and related proteins
D Ddes_0566 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein
D Ddes_0781 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein
D Ddes_0565 phosphate ABC transporter, inner membrane subunit PstC K02037 pstC; phosphate transport system permease protein
D Ddes_0782 phosphate transporter permease PstC K02037 pstC; phosphate transport system permease protein
D Ddes_0564 phosphate ABC transporter, inner membrane subunit PstA K02038 pstA; phosphate transport system permease protein
D Ddes_0783 binding-protein-dependent transport systems inner membrane component K02038 pstA; phosphate transport system permease protein
D Ddes_0569 phosphate ABC transporter, ATPase subunit K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D Ddes_0784 ABC transporter related K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D Ddes_1560 extracellular solute-binding protein family 3 K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D Ddes_1562 polar amino acid ABC transporter, inner membrane subunit K10002 gltK; glutamate/aspartate transport system permease protein
D Ddes_1561 polar amino acid ABC transporter, inner membrane subunit K10003 gltJ; glutamate/aspartate transport system permease protein
D Ddes_1563 ABC transporter related K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D Ddes_0472 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Ddes_1478 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Ddes_1065 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Ddes_2114 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Ddes_0473 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Ddes_1479 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Ddes_1066 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Ddes_2115 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Ddes_1067 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Ddes_0474 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Ddes_2116 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Ddes_1480 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Ddes_0475 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Ddes_1481 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Ddes_1068 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Ddes_2117 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Ddes_1069 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Ddes_0476 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Ddes_2118 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Ddes_1482 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Ddes_1542 NLPA lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein
D Ddes_1541 binding-protein-dependent transport systems inner membrane component K02072 metI; D-methionine transport system permease protein
D Ddes_1540 ABC transporter related K02071 metN; D-methionine transport system ATP-binding protein
D Ddes_1032 nickel ABC transporter, periplasmic nickel-binding protein K15584 nikA; nickel transport system substrate-binding protein
D Ddes_1031 binding-protein-dependent transport systems inner membrane component K15585 nikB; nickel transport system permease protein
D Ddes_1030 binding-protein-dependent transport systems inner membrane component K15586 nikC; nickel transport system permease protein
D Ddes_1029 ABC transporter related K10824 nikE; nickel transport system ATP-binding protein [EC:7.2.2.11]
D Ddes_1008 periplasmic solute binding protein K09815 znuA; zinc transport system substrate-binding protein
D Ddes_1010 ABC-3 protein K09816 znuB; zinc transport system permease protein
D Ddes_1009 ABC transporter related K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D Ddes_1734 hypothetical protein K02009 cbiN; cobalt/nickel transport protein
D Ddes_1471 cobalamin (vitamin B12) biosynthesis CbiM protein K02007 cbiM; cobalt/nickel transport system permease protein
D Ddes_1473 cobalt ABC transporter, inner membrane subunit CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D Ddes_1474 ABC transporter related K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D Ddes_0648 conserved hypothetical protein K10094 cbiK; nickel transport protein
D Ddes_1470 conserved hypothetical protein K10094 cbiK; nickel transport protein
D Ddes_1472 conserved hypothetical protein K16915 cbiL; nickel transport protein
D Ddes_0613 lipoprotein releasing system, transmembrane protein, LolC/E family K09808 lolC_E; lipoprotein-releasing system permease protein
D Ddes_0612 ABC transporter related K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D Ddes_2365 cytochrome c assembly protein K02195 ccmC; heme exporter protein C
D Ddes_2366 cytochrome c-type biogenesis protein CcmB K02194 ccmB; heme exporter protein B
D Ddes_2367 heme exporter protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D Ddes_0635 type I secretion system ATPase K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D Ddes_2109 ABC transporter related K19350 lsa; lincosamide and streptogramin A transport system ATP-binding/permease protein
C 02060 Phosphotransferase system (PTS) [PATH:dds02060]
D Ddes_1796 phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D Ddes_1795 phosphocarrier, HPr family K02784 ptsH; phosphocarrier protein HPr
D Ddes_0971 PTS system fructose subfamily IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D Ddes_1794 PTS system mannose/fructose/sorbose family IID component K02796 manZ; mannose PTS system EIID component
C 03070 Bacterial secretion system [PATH:dds03070]
D Ddes_0863 outer membrane efflux protein K12340 tolC; outer membrane protein
D Ddes_1929 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D Ddes_1928 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D Ddes_1630 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D Ddes_1177 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D Ddes_0680 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D Ddes_1930 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D Ddes_1967 YidC translocase/secretase K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Ddes_1709 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D Ddes_0656 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D Ddes_1804 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D Ddes_1121 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA
D Ddes_1724 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA
D Ddes_1807 twin-arginine translocation protein, TatB subunit K03117 tatB; sec-independent protein translocase protein TatB
D Ddes_1808 Sec-independent protein translocase, TatC subunit K03118 tatC; sec-independent protein translocase protein TatC
D Ddes_1316 PpkA-related protein K11912 ppkA; serine/threonine-protein kinase PpkA [EC:2.7.11.1]
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:dds02020]
D Ddes_0568 histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Ddes_0567 two component transcriptional regulator, winged helix family K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D Ddes_0566 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein
D Ddes_0781 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein
D Ddes_0816 response regulator receiver protein K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D Ddes_1208 protease Do K04771 degP; serine protease Do [EC:3.4.21.107]
D Ddes_1311 peptidase S1 and S6 chymotrypsin/Hap K04771 degP; serine protease Do [EC:3.4.21.107]
D Ddes_0732 efflux transporter, RND family, MFP subunit K07799 mdtA; membrane fusion protein, multidrug efflux system
D Ddes_0900 efflux transporter, RND family, MFP subunit K07799 mdtA; membrane fusion protein, multidrug efflux system
D Ddes_0733 acriflavin resistance protein K07788 mdtB; multidrug efflux pump
D Ddes_0734 acriflavin resistance protein K07789 mdtC; multidrug efflux pump
D Ddes_2282 flagellin domain protein K02406 fliC; flagellin
D Ddes_1028 flagellin domain protein K02406 fliC; flagellin
D Ddes_2280 flagellin domain protein K02406 fliC; flagellin
D Ddes_0325 RNA polymerase, sigma 28 subunit, FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA
D Ddes_2179 flagellar motor protein MotA K02556 motA; chemotaxis protein MotA
D Ddes_1680 osmosensitive K+ channel signal transduction histidine kinase K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D Ddes_1681 two component transcriptional regulator, winged helix family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D Ddes_1677 potassium-transporting ATPase, A subunit K01546 kdpA; potassium-transporting ATPase potassium-binding subunit
D Ddes_1678 K+-transporting ATPase, B subunit K01547 kdpB; potassium-transporting ATPase ATP-binding subunit [EC:7.2.2.6]
D Ddes_1679 Potassium-transporting ATPase K01548 kdpC; potassium-transporting ATPase KdpC subunit
D Ddes_2377 protein of unknown function DUF112 transmembrane K07793 tctA; putative tricarboxylic transport membrane protein
D Ddes_2378 conserved hypothetical protein K07794 tctB; putative tricarboxylic transport membrane protein
D Ddes_2376 conserved hypothetical protein K07795 tctC; putative tricarboxylic transport membrane protein
D Ddes_0003 Chromosomal replication initiator DnaA domain protein K02313 dnaA; chromosomal replication initiator protein
D Ddes_0833 Chromosomal replication initiator DnaA K02313 dnaA; chromosomal replication initiator protein
D Ddes_1535 signal transduction histidine kinase regulating citrate/malate metabolism K11614 yufL; two-component system, CitB family, sensor histidine kinase MalK [EC:2.7.13.3]
D Ddes_1534 Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)) K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D Ddes_1684 major facilitator superfamily MFS_1 K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC
D Ddes_1999 carbon storage regulator, CsrA K03563 csrA; carbon storage regulator
D Ddes_1148 nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1
D Ddes_1149 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Ddes_1593 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Ddes_1146 transcriptional regulator, NifA subfamily, Fis Family K02584 nifA; Nif-specific regulatory protein
D Ddes_0186 histidine kinase K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3]
D Ddes_0768 PAS/PAC sensor signal transduction histidine kinase K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3]
D Ddes_0852 histidine kinase K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3]
D Ddes_0187 two component, sigma54 specific, transcriptional regulator, Fis family K07713 zraR; two-component system, NtrC family, response regulator HydG
D Ddes_0769 two component, sigma54 specific, transcriptional regulator, Fis family K07713 zraR; two-component system, NtrC family, response regulator HydG
D Ddes_0765 hypothetical protein K07803 zraP; zinc resistance-associated protein
D Ddes_1507 sodium:dicarboxylate symporter K11103 dctA; aerobic C4-dicarboxylate transport protein
D Ddes_0974 RNA polymerase, sigma 54 subunit, RpoN K03092 rpoN; RNA polymerase sigma-54 factor
D Ddes_0837 hydrogenase (NiFe) small subunit HydA K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]
D Ddes_0836 nickel-dependent hydrogenase large subunit K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6]
D Ddes_0835 Ni/Fe-hydrogenase, b-type cytochrome subunit K03620 hyaC; Ni/Fe-hydrogenase 1 B-type cytochrome subunit
D Ddes_1379 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D Ddes_0945 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Ddes_0086 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein
D Ddes_0038 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Ddes_0183 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Ddes_0349 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Ddes_0166 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein
D Ddes_0285 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein
D Ddes_0300 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Ddes_0301 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein
D Ddes_0821 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Ddes_1580 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Ddes_2149 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Ddes_0134 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Ddes_2112 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Ddes_2175 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D Ddes_1022 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D Ddes_1381 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D Ddes_1383 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Ddes_0324 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Ddes_1382 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Ddes_1377 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Ddes_0147 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D Ddes_0197 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D Ddes_2084 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D Ddes_0810 two component transcriptional regulator, LuxR family K14979 ssrB; two-component system, LuxR family, secretion system response regulator SsrB
D Ddes_1305 sigma54 specific transcriptional regulator, Fis family K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D Ddes_2381 two component, sigma54 specific, transcriptional regulator, Fis family K10943 flrC; two-component system, response regulator FlrC
D Ddes_1563 ABC transporter related K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D Ddes_1562 polar amino acid ABC transporter, inner membrane subunit K10002 gltK; glutamate/aspartate transport system permease protein
D Ddes_1561 polar amino acid ABC transporter, inner membrane subunit K10003 gltJ; glutamate/aspartate transport system permease protein
D Ddes_1560 extracellular solute-binding protein family 3 K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D Ddes_2092 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Ddes_1411 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Ddes_0048 Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D Ddes_1457 cytochrome c class I K08738 CYC; cytochrome c
D Ddes_2196 cytochrome bd ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D Ddes_2195 cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D Ddes_0863 outer membrane efflux protein K12340 tolC; outer membrane protein
D Ddes_1015 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D Ddes_1875 Hpt protein K20976 hptB; histidine phosphotransfer protein HptB
D Ddes_2005 anti-sigma-28 factor, FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:dds02024]
D Ddes_1592 Anthranilate synthase K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D Ddes_1681 two component transcriptional regulator, winged helix family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D Ddes_0045 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D Ddes_0047 amino acid permease-associated region K20265 gadC; glutamate:GABA antiporter
D Ddes_0046 amino acid permease-associated region K20265 gadC; glutamate:GABA antiporter
D Ddes_0472 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Ddes_1478 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Ddes_1065 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Ddes_2114 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Ddes_0473 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Ddes_1479 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Ddes_1066 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Ddes_2115 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Ddes_1067 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Ddes_0474 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Ddes_2116 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Ddes_1480 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Ddes_0475 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Ddes_1481 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Ddes_1068 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Ddes_2117 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Ddes_1069 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Ddes_0476 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Ddes_2118 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Ddes_1482 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Ddes_1122 outer membrane adhesin like proteiin K20276 bapA; large repetitive protein
D Ddes_0276 outer membrane adhesin like proteiin K20276 bapA; large repetitive protein
D Ddes_1253 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Ddes_2092 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Ddes_1411 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Ddes_1619 riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D Ddes_0202 protein of unknown function DUF606 K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D Ddes_0309 RND efflux system, outer membrane lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system
D Ddes_1538 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D Ddes_1214 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D Ddes_1215 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D Ddes_1893 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein
D Ddes_0892 oligopeptide/dipeptide ABC transporter, ATPase subunit K02032 ddpF; peptide/nickel transport system ATP-binding protein
D Ddes_1967 YidC translocase/secretase K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Ddes_1630 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D Ddes_1177 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D Ddes_0680 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D Ddes_1930 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D Ddes_1709 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D Ddes_0656 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D Ddes_1804 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:dds02030]
D Ddes_0945 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Ddes_0086 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein
D Ddes_0038 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Ddes_0183 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Ddes_0349 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Ddes_0166 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein
D Ddes_0285 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein
D Ddes_0300 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Ddes_0301 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein
D Ddes_0821 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Ddes_1580 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Ddes_2149 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Ddes_0134 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Ddes_2112 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Ddes_1383 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Ddes_2175 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D Ddes_1022 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D Ddes_1381 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D Ddes_0324 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Ddes_1382 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Ddes_0389 putative chemotaxis phosphatase, CheZ K03414 cheZ; chemotaxis protein CheZ
D Ddes_1377 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Ddes_0147 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D Ddes_0197 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D Ddes_2084 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D Ddes_1379 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D Ddes_1571 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D Ddes_1836 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D Ddes_0375 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D Ddes_2179 flagellar motor protein MotA K02556 motA; chemotaxis protein MotA
D Ddes_2180 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:dds02040]
D Ddes_1574 flagellar hook-basal body complex subunit FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D Ddes_1573 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D Ddes_1571 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D Ddes_1569 ATPase FliI/YscN K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D Ddes_0698 flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ
D Ddes_1259 flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D Ddes_0373 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL
D Ddes_0323 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL
D Ddes_1836 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D Ddes_0375 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D Ddes_0376 flagellar biosynthesis protein FliO K02418 fliO; flagellar protein FliO/FliZ
D Ddes_0377 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D Ddes_0378 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D Ddes_0193 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D Ddes_0331 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D Ddes_0332 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D Ddes_0393 flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D Ddes_1576 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D Ddes_1575 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D Ddes_1260 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D Ddes_2091 protein of unknown function DUF1078 domain protein K02390 flgE; flagellar hook protein FlgE
D Ddes_1261 protein of unknown function DUF1078 domain protein K02390 flgE; flagellar hook protein FlgE
D Ddes_0391 protein of unknown function DUF1078 domain protein K02391 flgF; flagellar basal-body rod protein FlgF
D Ddes_0392 flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D Ddes_0394 flagellar L-ring protein K02393 flgH; flagellar L-ring protein FlgH
D Ddes_2004 flagellar P-ring protein K02394 flgI; flagellar P-ring protein FlgI
D Ddes_2003 flagellar protein FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ
D Ddes_2001 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D Ddes_2000 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D Ddes_2282 flagellin domain protein K02406 fliC; flagellin
D Ddes_1028 flagellin domain protein K02406 fliC; flagellin
D Ddes_2280 flagellin domain protein K02406 fliC; flagellin
D Ddes_0529 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D Ddes_2179 flagellar motor protein MotA K02556 motA; chemotaxis protein MotA
D Ddes_2180 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
D Ddes_2005 anti-sigma-28 factor, FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D Ddes_1085 RNA polymerase, sigma 70 subunit, RpoD subfamily K03086 rpoD; RNA polymerase primary sigma factor
D Ddes_1305 sigma54 specific transcriptional regulator, Fis family K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D Ddes_0974 RNA polymerase, sigma 54 subunit, RpoN K03092 rpoN; RNA polymerase sigma-54 factor
D Ddes_2381 two component, sigma54 specific, transcriptional regulator, Fis family K10943 flrC; two-component system, response regulator FlrC
D Ddes_0325 RNA polymerase, sigma 28 subunit, FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D Ddes_2216 Phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
D Ddes_1442 homocysteine S-methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:dds01501]
D Ddes_1339 major facilitator superfamily MFS_1 K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D Ddes_0307 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Ddes_0308 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump
D Ddes_0309 RND efflux system, outer membrane lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system
D Ddes_0863 outer membrane efflux protein K12340 tolC; outer membrane protein
D Ddes_1918 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Ddes_0161 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D Ddes_1107 Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:dds01502]
D Ddes_0872 D-alanine/D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Ddes_0171 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D Ddes_1109 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D Ddes_1110 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D Ddes_1113 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:dds01503]
D Ddes_0816 response regulator receiver protein K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D Ddes_0609 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Ddes_1208 protease Do K04771 degP; serine protease Do [EC:3.4.21.107]
D Ddes_1311 peptidase S1 and S6 chymotrypsin/Hap K04771 degP; serine protease Do [EC:3.4.21.107]
D Ddes_0307 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Ddes_0308 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump
D Ddes_0863 outer membrane efflux protein K12340 tolC; outer membrane protein
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:dds01000]
C 01001 Protein kinases [BR:dds01001]
D Ddes_1316 PpkA-related protein K11912 ppkA; serine/threonine-protein kinase PpkA [EC:2.7.11.1]
D Ddes_0568 histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Ddes_1680 osmosensitive K+ channel signal transduction histidine kinase K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D Ddes_1535 signal transduction histidine kinase regulating citrate/malate metabolism K11614 yufL; two-component system, CitB family, sensor histidine kinase MalK [EC:2.7.13.3]
D Ddes_0186 histidine kinase K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3]
D Ddes_0768 PAS/PAC sensor signal transduction histidine kinase K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3]
D Ddes_0852 histidine kinase K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3]
D Ddes_1567 histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D Ddes_0813 histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D Ddes_1383 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:dds01009]
D Ddes_0039 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D Ddes_1423 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D Ddes_2197 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG
D Ddes_1017 HAD-superfamily hydrolase, subfamily IB (PSPase-like) K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:dds01002]
D Ddes_0386 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
D Ddes_0834 hydrogenase maturation protease K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-]
D Ddes_1037 hydrogenase expression/formation protein K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-]
D Ddes_1806 GMP synthase, large subunit K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D Ddes_1768 NLP/P60 protein K19303 mepH; murein DD-endopeptidase [EC:3.4.-.-]
D Ddes_0008 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D Ddes_1156 ferredoxin-dependent glutamate synthase K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D Ddes_2371 glucosamine/fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D Ddes_2055 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D Ddes_1402 intracellular protease, PfpI family K05520 yhbO; deglycase [EC:3.5.1.124]
D Ddes_0345 Peptidase M16C associated domain protein K06972 PITRM1; presequence protease [EC:3.4.24.-]
D Ddes_1070 peptidase M16 domain protein K07263 pqqL; zinc protease [EC:3.4.24.-]
D Ddes_2206 Leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D Ddes_1933 peptidase M20 K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D Ddes_1006 Peptidase M23 K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-]
D Ddes_0681 methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D Ddes_2198 peptidase M24 K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D Ddes_1717 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D Ddes_2054 peptidase M48 Ste24p K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D Ddes_0515 membrane-associated zinc metalloprotease K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D Ddes_1208 protease Do K04771 degP; serine protease Do [EC:3.4.21.107]
D Ddes_1311 peptidase S1 and S6 chymotrypsin/Hap K04771 degP; serine protease Do [EC:3.4.21.107]
D Ddes_1041 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Ddes_0691 Endopeptidase Clp K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D Ddes_0694 ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D Ddes_1626 ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D Ddes_0282 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D Ddes_0896 carboxyl-terminal protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D Ddes_2329 signal peptide peptidase SppA, 36K type K04773 sppA; protease IV [EC:3.4.21.-]
D Ddes_1449 20S proteasome A and B subunits K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D Ddes_2027 gamma-glutamyltransferase K22602 hpxW; oxamate amidohydrolase [EC:3.5.1.126]
D Ddes_0024 peptidase U32 K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D Ddes_1294 alpha-2-macroglobulin domain protein K06894 yfhM; alpha-2-macroglobulin
D Ddes_0867 HflC protein K04087 hflC; modulator of FtsH protease HflC
D Ddes_0866 HflK protein K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:dds01003]
D Ddes_0746 Oligosaccharyl transferase STT3 subunit K07151 STT3; dolichyl-diphosphooligosaccharide---protein glycosyltransferase [EC:2.4.99.18]
D Ddes_0470 glycosyl transferase group 1 K16150 K16150; glycogen synthase [EC:2.4.1.11]
D Ddes_0468 alpha-glucan phosphorylase K16153 K16153; glycogen phosphorylase/synthase [EC:2.4.1.1 2.4.1.11]
D Ddes_1293 penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D Ddes_1918 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Ddes_2056 glycosyl transferase group 1 K16703 wcaL; colanic acid/amylovoran/stewartan biosynthesis glycosyltransferase WcaL/AmsK/CpsK [EC:2.4.-.-]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:dds01005]
D Ddes_2213 iron-containing alcohol dehydrogenase K19714 kdnB; 3-deoxy-alpha-D-manno-octulosonate 8-oxidase [EC:1.1.3.48]
D Ddes_2047 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D Ddes_1756 glycosyl transferase family 9 K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
D Ddes_1285 phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D Ddes_1837 D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D Ddes_1391 rfaE bifunctional protein K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D Ddes_1920 ADP-L-glycero-D-manno-heptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D Ddes_2219 glycosyl transferase family 2 K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-]
D Ddes_2173 glycosyl transferase family 2 K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:dds01011]
D Ddes_1845 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D Ddes_1115 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D Ddes_1114 UDP-N-acetylmuramate/alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D Ddes_1111 UDP-N-acetylmuramoylalanine/D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D Ddes_1108 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D Ddes_0872 D-alanine/D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Ddes_0171 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D Ddes_0088 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D Ddes_1110 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D Ddes_1113 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D Ddes_1418 undecaprenol kinase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Ddes_0654 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase
D Ddes_0736 virulence factor MVIN family protein K03980 murJ; putative peptidoglycan lipid II flippase
D Ddes_1918 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Ddes_1293 penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D Ddes_0161 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D Ddes_1107 Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D Ddes_1041 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Ddes_1768 NLP/P60 protein K19303 mepH; murein DD-endopeptidase [EC:3.4.-.-]
D Ddes_1006 Peptidase M23 K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-]
D Ddes_0606 MltA domain protein K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29]
D Ddes_0869 Membrane-bound lytic murein transglycosylase B-like protein K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D Ddes_2079 Lytic transglycosylase catalytic K08306 mltC; peptidoglycan lytic transglycosylase C [EC:4.2.2.29]
D Ddes_0380 Lytic transglycosylase catalytic K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D Ddes_0030 aminodeoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D Ddes_2298 rare lipoprotein A K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D Ddes_0513 rare lipoprotein A K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D Ddes_0609 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:dds01004]
D Ddes_0744 Acyl transferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D Ddes_1613 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D Ddes_1616 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Ddes_1614 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Ddes_0607 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D Ddes_1048 short-chain dehydrogenase/reductase SDR K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D Ddes_1748 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Ddes_1253 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Ddes_2328 AMP-dependent synthetase and ligase K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-]
D Ddes_1612 fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D Ddes_0104 protein of unknown function DUF205 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D Ddes_1167 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins [BR:dds01008]
D Ddes_1020 aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
C 01006 Prenyltransferases [BR:dds01006]
D Ddes_0955 Polyprenyl synthetase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D Ddes_1912 Polyprenyl synthetase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D Ddes_0518 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D Ddes_2036 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D Ddes_0874 UbiA prenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D Ddes_0651 4-hydroxybenzoate polyprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
C 01007 Amino acid related enzymes [BR:dds01007]
D Ddes_0192 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Ddes_1769 glutamyl-tRNA synthetase class Ic K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Ddes_0267 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D Ddes_0352 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Ddes_0032 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D Ddes_1447 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Ddes_0743 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Ddes_1420 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Ddes_0385 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D Ddes_2073 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D Ddes_1623 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Ddes_0620 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D Ddes_0010 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Ddes_2273 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D Ddes_0009 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Ddes_0915 glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D Ddes_0916 glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D Ddes_2307 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D Ddes_0951 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Ddes_0490 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D Ddes_0290 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Ddes_0486 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D Ddes_0484 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D Ddes_2245 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Ddes_2089 aminotransferase class I and II K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D Ddes_2313 aminotransferase class I and II K14261 alaC; alanine-synthesizing transaminase [EC:2.6.1.-]
D Ddes_1151 aminotransferase class I and II K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83]
D Ddes_0761 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Ddes_0423 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D Ddes_1958 acetylornithine and succinylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D Ddes_1300 adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D Ddes_0218 aminotransferase class-III K03851 tpa; taurine-pyruvate aminotransferase [EC:2.6.1.77]
D Ddes_2017 glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D Ddes_2275 aminotransferase class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Ddes_2143 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Ddes_0641 Alanine--glyoxylate transaminase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D Ddes_2212 DegT/DnrJ/EryC1/StrS aminotransferase K13010 per; perosamine synthetase [EC:2.6.1.102]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:dds00194]
D Ddes_2189 ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D Ddes_2188 ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D Ddes_2187 ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D Ddes_2186 ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D Ddes_2185 ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D Ddes_2183 H+transporting two-sector ATPase B/B' subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D Ddes_2184 H+transporting two-sector ATPase B/B' subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D Ddes_2255 ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D Ddes_2254 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D Ddes_2252 hypothetical protein K02116 atpI; ATP synthase protein I
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:dds03000]
D Ddes_0271 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Ddes_0272 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Ddes_0415 transcriptional regulator, AraC family K25495 nimR; AraC family transcriptional regulator, regulator of nimT
D Ddes_0106 transcription activator effector binding K13653 K13653; AraC family transcriptional regulator
D Ddes_1161 transcriptional regulator, AraC family K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
D Ddes_1855 transcriptional regulator, LysR family K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
D Ddes_1781 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Ddes_1719 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D Ddes_0854 GntR domain protein K22104 nanR; GntR family transcriptional regulator, sialic acid-inducible nan operon repressor
D Ddes_1162 transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D Ddes_0603 ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D Ddes_1388 ferric uptake regulator, Fur family K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
D Ddes_2092 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Ddes_1411 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Ddes_0383 putative transcriptional regulator, Crp/Fnr family K21555 cooA; CRP/FNR family transcriptional regulator, carbon monoxide oxidation system transcription regulator
D Ddes_0528 transcriptional regulator, Crp/Fnr family K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator
D Ddes_0842 transcriptional regulator, BadM/Rrf2 family K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D Ddes_1077 transcriptional regulator, BadM/Rrf2 family K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D Ddes_0843 transcriptional regulator, BadM/Rrf2 family K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
D Ddes_1925 putative transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D Ddes_1264 transcriptional regulator, ArsR family K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
D Ddes_1554 biotin/acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D Ddes_1305 sigma54 specific transcriptional regulator, Fis family K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D Ddes_0918 transcriptional regulator, NifA subfamily, Fis Family K15836 fhlA; formate hydrogenlyase transcriptional activator
D Ddes_1146 transcriptional regulator, NifA subfamily, Fis Family K02584 nifA; Nif-specific regulatory protein
D Ddes_0167 TOBE domain protein K02019 modE; molybdate transport system regulatory protein
D Ddes_2052 TOBE domain protein K02019 modE; molybdate transport system regulatory protein
D Ddes_2257 CoA-binding domain protein K01926 rex; redox-sensing transcriptional repressor
D Ddes_2356 hypothetical protein K07726 K07726; putative transcriptional regulator
D Ddes_1765 putative transcriptional regulator, CopG family K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
D Ddes_0015 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Ddes_1455 transcriptional regulator, CarD family K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D Ddes_0621 amino acid-binding ACT domain protein K03567 gcvR; glycine cleavage system transcriptional repressor
D Ddes_0906 Uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D Ddes_1227 phage transcriptional regulator, AlpA K07733 alpA; prophage regulatory protein
D Ddes_0293 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
D Ddes_1896 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
D Ddes_1104 MraZ protein K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:dds03021]
D Ddes_0686 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D Ddes_1636 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D Ddes_1637 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D Ddes_2161 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Ddes_1085 RNA polymerase, sigma 70 subunit, RpoD subfamily K03086 rpoD; RNA polymerase primary sigma factor
D Ddes_1443 putative RNA polymerase, sigma 70 family subunit K03089 rpoH; RNA polymerase sigma-32 factor
D Ddes_0974 RNA polymerase, sigma 54 subunit, RpoN K03092 rpoN; RNA polymerase sigma-54 factor
D Ddes_0325 RNA polymerase, sigma 28 subunit, FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA
D Ddes_0061 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA
D Ddes_1622 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB
D Ddes_1631 NusG antitermination factor K02601 nusG; transcription termination/antitermination protein NusG
D Ddes_1255 anti-sigma-factor antagonist K04749 rsbV; anti-sigma B factor antagonist
D Ddes_0293 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
D Ddes_1896 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
D Ddes_1044 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D Ddes_1456 transcription termination factor Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:dds03019]
D Ddes_0791 ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12]
D Ddes_1027 Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D Ddes_0864 beta-lactamase domain protein K12574 rnj; ribonuclease J [EC:3.1.-.-]
D Ddes_1693 RNA binding metal dependent phosphohydrolase K18682 rny; ribonucrease Y [EC:3.1.-.-]
D Ddes_0737 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D Ddes_0129 metal dependent phosphohydrolase K03698 cbf; 3'-5' exoribonuclease [EC:3.1.-.-]
D Ddes_0362 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D Ddes_1725 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D Ddes_2216 Phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Ddes_0054 Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D Ddes_1456 transcription termination factor Rho K03628 rho; transcription termination factor Rho
D Ddes_1423 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D Ddes_2151 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D Ddes_1548 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Ddes_0446 metal dependent phosphohydrolase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D Ddes_1999 carbon storage regulator, CsrA K03563 csrA; carbon storage regulator
D Ddes_0972 conserved hypothetical protein K06958 rapZ; RNase adapter protein RapZ
D Ddes_1306 ATP-dependent helicase HrpB K03579 hrpB; ATP-dependent helicase HrpB [EC:5.6.2.6]
C 03041 Spliceosome
C 03011 Ribosome [BR:dds03011]
D Ddes_1207 RNA binding S1 domain protein K02945 RP-S1; small subunit ribosomal protein S1
D Ddes_2333 ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D Ddes_0346 ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D Ddes_0666 ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D Ddes_0685 ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D Ddes_0677 ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D Ddes_2024 ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D Ddes_2070 ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D Ddes_0674 ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D Ddes_1063 ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D Ddes_0659 ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D Ddes_0684 ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D Ddes_2071 ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D Ddes_0683 ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D Ddes_0673 ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D Ddes_0055 ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D Ddes_1803 ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D Ddes_0669 ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D Ddes_2023 ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D Ddes_0664 ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D Ddes_0917 ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D Ddes_1089 ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D Ddes_1633 ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D Ddes_0663 ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D Ddes_0661 ribosomal protein L4/L1e K02926 RP-L4; large subunit ribosomal protein L4
D Ddes_0672 ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D Ddes_0675 ribosomal protein L6 signature 1 K02933 RP-L6; large subunit ribosomal protein L6
D Ddes_2022 ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D Ddes_1634 ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D Ddes_1632 ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D Ddes_1635 ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D Ddes_1062 ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D Ddes_0670 ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D Ddes_0679 ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D Ddes_0667 ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D Ddes_0687 ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D Ddes_0676 ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D Ddes_1790 ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D Ddes_0487 ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D Ddes_2250 ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D Ddes_0665 ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D Ddes_0662 Ribosomal protein L25/L23 K02892 RP-L23; large subunit ribosomal protein L23
D Ddes_0671 ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D Ddes_2249 ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D Ddes_1384 ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D Ddes_0668 ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D Ddes_0678 ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D Ddes_2301 ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D Ddes_1611 ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D Ddes_1629 ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D Ddes_1970 ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D Ddes_0488 ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D Ddes_0682 ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D Ddes_1452 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 K02897 RP-L25; large subunit ribosomal protein L25
D Ddes_R0012 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Ddes_R0054 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Ddes_R0036 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Ddes_R0055 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Ddes_R0037 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Ddes_R0011 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Ddes_R0059 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Ddes_R0007 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Ddes_R0041 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Ddes_R0010 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Ddes_R0038 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Ddes_R0056 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:dds03009]
D Ddes_1027 Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D Ddes_0371 GTP-binding protein Era K03595 era; GTPase
D Ddes_2248 GTP-binding protein Obg/CgtA K03979 obgE; GTPase [EC:3.6.5.-]
D Ddes_0293 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
D Ddes_1896 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
D Ddes_0061 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA
D Ddes_1622 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB
D Ddes_1631 NusG antitermination factor K02601 nusG; transcription termination/antitermination protein NusG
D Ddes_1091 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D Ddes_0014 NusB/RsmB/TIM44 K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D Ddes_2034 methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D Ddes_1169 protein of unknown function DUF558 K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D Ddes_2325 Fmu (Sun) domain protein K11392 rsmF; 16S rRNA (cytosine1407-C5)-methyltransferase [EC:2.1.1.178]
D Ddes_0745 glucose inhibited division protein K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D Ddes_1105 S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D Ddes_1793 Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D Ddes_2302 hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D Ddes_0379 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D Ddes_0537 ribosomal RNA methyltransferase RrmJ/FtsJ K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D Ddes_0747 protein of unknown function DUF163 K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D Ddes_0445 radical SAM enzyme, Cfr family K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D Ddes_1211 pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D Ddes_1476 pseudouridine synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D Ddes_1600 pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D Ddes_1962 pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D Ddes_1175 ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D Ddes_1801 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
D Ddes_2283 MiaB-like tRNA modifying enzyme YliG K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D Ddes_1001 protein of unknown function DUF181 K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
D Ddes_1064 protein of unknown function DUF181 K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
D Ddes_1004 ribosomal L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D Ddes_0791 ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12]
D Ddes_0031 Holliday junction resolvase YqgF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D Ddes_0362 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D Ddes_1725 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D Ddes_1477 small GTP-binding protein K03977 engA; GTPase
D Ddes_0879 GTP-binding proten HflX K03665 hflX; GTPase
D Ddes_0748 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D Ddes_1536 (p)ppGpp synthetase I, SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D Ddes_0062 protein of unknown function DUF150 K09748 rimP; ribosome maturation factor RimP
D Ddes_0560 iojap-like protein K09710 ybeB; ribosome-associated protein
D Ddes_1556 protein of unknown function UPF0054 K07042 ybeY; probable rRNA maturation factor
D Ddes_0650 protein of unknown function DUF615 K09889 yjgA; ribosome-associated protein
D Ddes_0973 sigma 54 modulation protein/ribosomal protein S30EA K05808 hpf; ribosome hibernation promoting factor
D Ddes_0946 GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase
D Ddes_1610 protein of unknown function DUF177 K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:dds03016]
D Ddes_1184 Polynucleotide adenylyltransferase region K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D Ddes_1555 Polynucleotide adenylyltransferase region K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D Ddes_0192 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Ddes_1769 glutamyl-tRNA synthetase class Ic K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Ddes_0951 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Ddes_0385 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D Ddes_1623 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Ddes_1420 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Ddes_0267 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D Ddes_0743 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Ddes_0620 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D Ddes_0010 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Ddes_0290 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Ddes_2273 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D Ddes_0490 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D Ddes_2307 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D Ddes_1447 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Ddes_2073 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D Ddes_0009 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Ddes_0486 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D Ddes_0484 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D Ddes_0352 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Ddes_0032 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D Ddes_1254 D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D Ddes_1919 tRNA methyltransferase complex GCD14 subunit K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220]
D Ddes_0696 tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D Ddes_0056 tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D Ddes_1075 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Ddes_0748 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D Ddes_2036 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D Ddes_1965 tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D Ddes_1934 glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D Ddes_0689 selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D Ddes_1969 ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D Ddes_R0034 rnpB; RNA component of RNaseP K01978 rnpB; M1 RNA
D Ddes_0103 ribonuclease II K01147 rnb; exoribonuclease II [EC:3.1.13.1]
D Ddes_1137 ABC transporter related K06020 ettA; energy-dependent translational throttle protein EttA
D Ddes_0915 glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D Ddes_0916 glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D Ddes_1602 ybaK/ebsC protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D Ddes_2031 CMP/dCMP deaminase zinc-binding K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D Ddes_2082 dihydrouridine synthase DuS K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D Ddes_1273 RNA modification enzyme, MiaB family K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D Ddes_1401 RNA modification enzyme, MiaB family K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5]
D Ddes_0941 tRNA/rRNA methyltransferase (SpoU) K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-]
D Ddes_0511 gid protein K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74]
D Ddes_1789 tRNA (guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D Ddes_0597 tRNA guanosine-2'-O-methyltransferase K00556 trmH; tRNA (guanosine-2'-O-)-methyltransferase [EC:2.1.1.34]
D Ddes_2141 tRNA/rRNA methyltransferase (SpoU) K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D Ddes_0592 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D Ddes_0292 thiamine biosynthesis protein K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D Ddes_2277 PP-loop domain protein K21947 ttuA; tRNA-5-methyluridine54 2-sulfurtransferase [EC:2.8.1.15]
D Ddes_2160 PP-loop domain protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D Ddes_0909 HesB/YadR/YfhF-family protein K13628 iscA; iron-sulfur cluster assembly protein
D Ddes_0139 S-adenosylmethionine/tRNA-ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D Ddes_1083 exsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D Ddes_1485 queuosine biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D Ddes_0653 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D Ddes_0790 protein of unknown function DUF208 K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6]
D Ddes_2026 queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D Ddes_0957 tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D Ddes_0514 peptidase M22 glycoprotease K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D Ddes_1198 metalloendopeptidase, glycoprotease family K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D Ddes_1142 protein of unknown function UPF0079 K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D Ddes_0737 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D Ddes_0054 Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:dds03012]
D Ddes_0059 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D Ddes_0489 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D Ddes_2203 ABC transporter related K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D Ddes_0347 translation elongation factor Ts K02357 tsf; elongation factor Ts
D Ddes_1628 translation elongation factor Tu K02358 tuf; elongation factor Tu
D Ddes_1092 translation elongation factor G K02355 fusA; elongation factor G
D Ddes_1785 small GTP-binding protein K02355 fusA; elongation factor G
D Ddes_2069 translation elongation factor G K02355 fusA; elongation factor G
D Ddes_2086 selenocysteine-specific translation elongation factor K03833 selB; selenocysteine-specific elongation factor
D Ddes_2299 peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D Ddes_0519 ribosome recycling factor K02838 frr; ribosome recycling factor
D Ddes_1627 modification methylase, HemK family K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D Ddes_1454 Aminoacyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D Ddes_0498 translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D Ddes_1204 translation elongation factor P K02356 efp; elongation factor P
D Ddes_1938 hypothetical protein K02836 prfB; peptide chain release factor 2
C 03110 Chaperones and folding catalysts [BR:dds03110]
D Ddes_1429 ATP-dependent Clp protease, ATP-binding subunit clpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
D Ddes_0578 ATP-dependent chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D Ddes_0692 ATP-dependent Clp protease, ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D Ddes_1012 heat shock protein HslVU, ATPase subunit HslU K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D Ddes_2197 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG
D Ddes_2151 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D Ddes_1548 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Ddes_2162 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D Ddes_0985 heat shock protein DnaJ domain protein K03686 dnaJ; molecular chaperone DnaJ
D Ddes_0580 chaperone DnaJ domain protein K05516 cbpA; curved DNA-binding protein
D Ddes_1053 GrpE protein K03687 GRPE; molecular chaperone GrpE
D Ddes_2281 heat shock protein Hsp20 K13993 HSP20; HSP20 family protein
D Ddes_1547 chaperonin Cpn10 K04078 groES; chaperonin GroES
D Ddes_1208 protease Do K04771 degP; serine protease Do [EC:3.4.21.107]
D Ddes_1311 peptidase S1 and S6 chymotrypsin/Hap K04771 degP; serine protease Do [EC:3.4.21.107]
D Ddes_1717 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D Ddes_2254 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D Ddes_1002 methyltransferase small K21804 METTL21A; protein N-lysine methyltransferase METTL21A [EC:2.1.1.-]
D Ddes_0765 hypothetical protein K07803 zraP; zinc resistance-associated protein
D Ddes_1498 hydrogenase expression/synthesis HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF
D Ddes_1886 hydrogenase expression/synthesis HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF
D Ddes_1497 hydrogenase accessory protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB
D Ddes_0739 peptidyl-prolyl cis-trans isomerase cyclophilin type K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D Ddes_0065 peptidyl-prolyl cis-trans isomerase cyclophilin type K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D Ddes_2372 PpiC-type peptidyl-prolyl cis-trans isomerase K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D Ddes_0912 SurA domain protein K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D Ddes_0117 Thioredoxin domain protein K03671 TXN; thioredoxin
D Ddes_1199 thioredoxin K03671 TXN; thioredoxin
C 04131 Membrane trafficking [BR:dds04131]
D Ddes_0894 Nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D Ddes_0156 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Ddes_0132 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Ddes_1103 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Ddes_2197 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system [BR:dds04121]
C 03051 Proteasome [BR:dds03051]
D Ddes_2197 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:dds03032]
D Ddes_0037 Ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D Ddes_0271 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Ddes_0272 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Ddes_0087 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D Ddes_1090 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D Ddes_0181 histone family protein DNA-binding protein K04764 ihfA; integration host factor subunit alpha
D Ddes_1941 histone family protein DNA-binding protein K05788 ihfB; integration host factor subunit beta
D Ddes_0003 Chromosomal replication initiator DnaA domain protein K02313 dnaA; chromosomal replication initiator protein
D Ddes_0833 Chromosomal replication initiator DnaA K02313 dnaA; chromosomal replication initiator protein
D Ddes_2021 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D Ddes_1086 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D Ddes_0455 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Ddes_1233 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Ddes_0004 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Ddes_1624 DNA polymerase III delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Ddes_2267 DNA polymerase III, delta prime subunit, putative K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Ddes_1582 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Ddes_2144 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Ddes_1791 Ribonuclease H K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D Ddes_1425 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Ddes_0006 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D Ddes_0005 DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D Ddes_0304 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:dds03036]
D Ddes_0271 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Ddes_0272 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Ddes_1027 Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D Ddes_0087 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D Ddes_1090 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D Ddes_0181 histone family protein DNA-binding protein K04764 ihfA; integration host factor subunit alpha
D Ddes_1941 histone family protein DNA-binding protein K05788 ihfB; integration host factor subunit beta
D Ddes_0580 chaperone DnaJ domain protein K05516 cbpA; curved DNA-binding protein
D Ddes_0579 conserved hypothetical protein K18997 cbpM; chaperone modulatory protein CbpM
D Ddes_0003 Chromosomal replication initiator DnaA domain protein K02313 dnaA; chromosomal replication initiator protein
D Ddes_0833 Chromosomal replication initiator DnaA K02313 dnaA; chromosomal replication initiator protein
D Ddes_1117 cell division protein FtsA K03590 ftsA; cell division protein FtsA
D Ddes_1194 Septum formation initiator K05589 ftsB; cell division protein FtsB
D Ddes_1107 Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D Ddes_1205 cell divisionFtsK/SpoIIIE K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D Ddes_1116 Polypeptide-transport-associated domain protein FtsQ-type K03589 ftsQ; cell division protein FtsQ
D Ddes_1112 cell division protein FtsW K03588 ftsW; cell division protein FtsW
D Ddes_1118 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D Ddes_1694 conserved hypothetical protein K09888 zapA; cell division protein ZapA
D Ddes_1695 conserved hypothetical protein K09892 zapB; cell division protein ZapB
D Ddes_0609 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Ddes_0307 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Ddes_0164 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins
D Ddes_1172 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins
D Ddes_0163 rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D Ddes_0160 rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA
D Ddes_0435 Cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein
D Ddes_1380 Cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein
D Ddes_0017 Cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein
D Ddes_0015 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Ddes_1934 glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D Ddes_0745 glucose inhibited division protein K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D Ddes_0511 gid protein K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74]
D Ddes_0967 integrase family protein K03733 xerC; integrase/recombinase XerC
D Ddes_1185 tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD
D Ddes_2358 filamentation induced by cAMP protein Fic K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D Ddes_1203 GTP-binding protein HSR1-related K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:dds03400]
D Ddes_1160 methylated-DNA/protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D Ddes_0064 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D Ddes_0198 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D Ddes_0750 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Ddes_2204 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Ddes_1957 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D Ddes_1161 transcriptional regulator, AraC family K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
D Ddes_1159 HhH-GPD family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D Ddes_1800 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D Ddes_0881 exodeoxyribonuclease III Xth K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D Ddes_1409 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D Ddes_1425 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Ddes_0601 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
D Ddes_1426 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
D Ddes_0581 excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C
D Ddes_0071 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Ddes_1636 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D Ddes_1637 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D Ddes_0686 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D Ddes_2161 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Ddes_0910 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D Ddes_1181 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D Ddes_1087 Smr protein/MutS2 K07456 mutS2; DNA mismatch repair protein MutS2
D Ddes_2319 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Ddes_0952 exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D Ddes_0954 Exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D Ddes_1233 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Ddes_0004 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Ddes_1624 DNA polymerase III delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Ddes_2267 DNA polymerase III, delta prime subunit, putative K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Ddes_1582 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Ddes_2144 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Ddes_0455 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Ddes_0270 DNA mismatch endonuclease Vsr K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
D Ddes_2289 helicase, RecD/TraA family K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D Ddes_0291 recA protein K03553 recA; recombination protein RecA
D Ddes_1268 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D Ddes_1267 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D Ddes_0740 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D Ddes_1711 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D Ddes_1245 metallophosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11
D Ddes_1432 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D Ddes_0914 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D Ddes_2147 recombination protein RecR K06187 recR; recombination protein RecR
D Ddes_1216 SMC domain protein K03631 recN; DNA repair protein RecN (Recombination protein N)
D Ddes_1212 conserved hypothetical protein K03554 rdgC; recombination associated protein RdgC
D Ddes_0928 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
D Ddes_0006 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D Ddes_0005 DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D Ddes_0304 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D Ddes_0087 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D Ddes_1090 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D Ddes_0181 histone family protein DNA-binding protein K04764 ihfA; integration host factor subunit alpha
D Ddes_1941 histone family protein DNA-binding protein K05788 ihfB; integration host factor subunit beta
D Ddes_2317 DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D Ddes_1833 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Ddes_0057 phosphoesterase RecJ domain protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
C 03029 Mitochondrial biogenesis [BR:dds03029]
D Ddes_0059 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D Ddes_0489 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D Ddes_0347 translation elongation factor Ts K02357 tsf; elongation factor Ts
D Ddes_1628 translation elongation factor Tu K02358 tuf; elongation factor Tu
D Ddes_1092 translation elongation factor G K02355 fusA; elongation factor G
D Ddes_1785 small GTP-binding protein K02355 fusA; elongation factor G
D Ddes_2069 translation elongation factor G K02355 fusA; elongation factor G
D Ddes_0371 GTP-binding protein Era K03595 era; GTPase
D Ddes_0352 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Ddes_1623 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Ddes_0010 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Ddes_0743 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Ddes_2154 glutamyl-tRNA(Gln) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D Ddes_1282 glutamyl-tRNA(Gln) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D Ddes_2153 glutamyl-tRNA(Gln) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D Ddes_0455 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Ddes_0611 outer membrane protein assembly complex, YaeT protein K07277 SAM50; outer membrane protein insertion porin family
D Ddes_2151 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D Ddes_1053 GrpE protein K03687 GRPE; molecular chaperone GrpE
D Ddes_1548 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Ddes_1547 chaperonin Cpn10 K04078 groES; chaperonin GroES
D Ddes_2162 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D Ddes_0985 heat shock protein DnaJ domain protein K03686 dnaJ; molecular chaperone DnaJ
D Ddes_1075 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Ddes_1967 YidC translocase/secretase K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Ddes_2197 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:dds02000]
D Ddes_0410 ABC transporter related K24846 pglK; ATP-binding cassette, subfamily B, bacterial PglK [EC:7.5.2.-]
D Ddes_1330 ABC transporter related K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D Ddes_1331 ABC transporter related K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D Ddes_0635 type I secretion system ATPase K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D Ddes_2109 ABC transporter related K19350 lsa; lincosamide and streptogramin A transport system ATP-binding/permease protein
D Ddes_0168 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D Ddes_0577 putative molybdenum ABC transporter, solute-binding protein K02020 modA; molybdate transport system substrate-binding protein
D Ddes_0169 molybdate ABC transporter, inner membrane subunit K02018 modB; molybdate transport system permease protein
D Ddes_0170 ABC transporter related K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D Ddes_1986 ABC transporter related K05776 modF; molybdate transport system ATP-binding protein
D Ddes_1778 ABC transporter, periplasmic substrate-binding protein K05772 tupA; tungstate transport system substrate-binding protein
D Ddes_1777 binding-protein-dependent transport systems inner membrane component K05773 tupB; tungstate transport system permease protein
D Ddes_1776 ABC transporter related K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6]
D Ddes_0574 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components K15553 ssuA; sulfonate transport system substrate-binding protein
D Ddes_0573 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein
D Ddes_0572 ABC transporter related K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D Ddes_0822 Substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein
D Ddes_0823 binding-protein-dependent transport systems inner membrane component K02001 proW; glycine betaine/proline transport system permease protein
D Ddes_0824 glycine betaine/L-proline ABC transporter, ATPase subunit K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D Ddes_0427 hypothetical protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D Ddes_0426 binding-protein-dependent transport systems inner membrane component K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D Ddes_0425 ABC transporter related K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D Ddes_1947 basic membrane lipoprotein K07335 bmpA; basic membrane protein A and related proteins
D Ddes_0534 Mammalian cell entry related domain protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D Ddes_1056 Mammalian cell entry related domain protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D Ddes_0741 protein of unknown function DUF140 K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D Ddes_1058 protein of unknown function DUF140 K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D Ddes_0535 ABC transporter related K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D Ddes_1057 ABC transporter related K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D Ddes_0533 toluene tolerance family protein K07323 mlaC; phospholipid transport system substrate-binding protein
D Ddes_0566 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein
D Ddes_0781 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein
D Ddes_0565 phosphate ABC transporter, inner membrane subunit PstC K02037 pstC; phosphate transport system permease protein
D Ddes_0782 phosphate transporter permease PstC K02037 pstC; phosphate transport system permease protein
D Ddes_0564 phosphate ABC transporter, inner membrane subunit PstA K02038 pstA; phosphate transport system permease protein
D Ddes_0783 binding-protein-dependent transport systems inner membrane component K02038 pstA; phosphate transport system permease protein
D Ddes_0569 phosphate ABC transporter, ATPase subunit K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D Ddes_0784 ABC transporter related K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D Ddes_1560 extracellular solute-binding protein family 3 K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D Ddes_1562 polar amino acid ABC transporter, inner membrane subunit K10002 gltK; glutamate/aspartate transport system permease protein
D Ddes_1561 polar amino acid ABC transporter, inner membrane subunit K10003 gltJ; glutamate/aspartate transport system permease protein
D Ddes_1563 ABC transporter related K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D Ddes_0472 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Ddes_1478 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Ddes_1065 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Ddes_2114 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Ddes_0473 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Ddes_1479 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Ddes_1066 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Ddes_2115 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Ddes_1067 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Ddes_0474 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Ddes_2116 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Ddes_1480 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Ddes_0475 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Ddes_1481 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Ddes_1068 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Ddes_2117 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Ddes_1069 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Ddes_0476 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Ddes_2118 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Ddes_1482 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Ddes_1542 NLPA lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein
D Ddes_1541 binding-protein-dependent transport systems inner membrane component K02072 metI; D-methionine transport system permease protein
D Ddes_1540 ABC transporter related K02071 metN; D-methionine transport system ATP-binding protein
D Ddes_0588 extracellular solute-binding protein family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D Ddes_1758 extracellular solute-binding protein family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D Ddes_0589 extracellular solute-binding protein family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D Ddes_1761 polar amino acid ABC transporter, inner membrane subunit K02029 ABC.PA.P; polar amino acid transport system permease protein
D Ddes_1759 polar amino acid ABC transporter, inner membrane subunit K02029 ABC.PA.P; polar amino acid transport system permease protein
D Ddes_0590 polar amino acid ABC transporter, inner membrane subunit K02029 ABC.PA.P; polar amino acid transport system permease protein
D Ddes_1760 ABC transporter related K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D Ddes_0591 ABC transporter related K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D Ddes_1032 nickel ABC transporter, periplasmic nickel-binding protein K15584 nikA; nickel transport system substrate-binding protein
D Ddes_1031 binding-protein-dependent transport systems inner membrane component K15585 nikB; nickel transport system permease protein
D Ddes_1030 binding-protein-dependent transport systems inner membrane component K15586 nikC; nickel transport system permease protein
D Ddes_1029 ABC transporter related K10824 nikE; nickel transport system ATP-binding protein [EC:7.2.2.11]
D Ddes_1538 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D Ddes_1214 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D Ddes_1215 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D Ddes_1893 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein
D Ddes_0892 oligopeptide/dipeptide ABC transporter, ATPase subunit K02032 ddpF; peptide/nickel transport system ATP-binding protein
D Ddes_1515 periplasmic binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D Ddes_0991 periplasmic binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D Ddes_1514 transport system permease protein K02015 ABC.FEV.P; iron complex transport system permease protein
D Ddes_0990 transport system permease protein K02015 ABC.FEV.P; iron complex transport system permease protein
D Ddes_1513 ABC transporter related K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D Ddes_0989 ABC transporter related K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D Ddes_0798 periplasmic binding protein K25034 btuF; cobalamin transport system substrate-binding protein
D Ddes_0796 transport system permease protein K25027 btuC; cobalamin transport system permease protein
D Ddes_0797 ABC transporter related K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8]
D Ddes_1008 periplasmic solute binding protein K09815 znuA; zinc transport system substrate-binding protein
D Ddes_1010 ABC-3 protein K09816 znuB; zinc transport system permease protein
D Ddes_1009 ABC transporter related K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D Ddes_1734 hypothetical protein K02009 cbiN; cobalt/nickel transport protein
D Ddes_1473 cobalt ABC transporter, inner membrane subunit CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D Ddes_1471 cobalamin (vitamin B12) biosynthesis CbiM protein K02007 cbiM; cobalt/nickel transport system permease protein
D Ddes_1474 ABC transporter related K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D Ddes_0648 conserved hypothetical protein K10094 cbiK; nickel transport protein
D Ddes_1470 conserved hypothetical protein K10094 cbiK; nickel transport protein
D Ddes_1472 conserved hypothetical protein K16915 cbiL; nickel transport protein
D Ddes_1490 ABC-2 type transporter K25180 ybhR; drug efflux transport system permease protein
D Ddes_1491 ABC-2 type transporter K25181 ybhS; drug efflux transport system permease protein
D Ddes_1492 ABC transporter related K25182 ybhF; drug efflux transport system ATP-binding protein
D Ddes_1493 secretion protein HlyD family protein K25183 ybhG; membrane fusion protein YbhG
D Ddes_0613 lipoprotein releasing system, transmembrane protein, LolC/E family K09808 lolC_E; lipoprotein-releasing system permease protein
D Ddes_0612 ABC transporter related K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D Ddes_2365 cytochrome c assembly protein K02195 ccmC; heme exporter protein C
D Ddes_2366 cytochrome c-type biogenesis protein CcmB K02194 ccmB; heme exporter protein B
D Ddes_2367 heme exporter protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D Ddes_1340 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein
D Ddes_1341 ABC transporter related K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Ddes_1318 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D Ddes_1393 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D Ddes_2105 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D Ddes_1317 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Ddes_2106 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Ddes_1922 ABC transporter related K09013 sufC; Fe-S cluster assembly ATP-binding protein
D Ddes_1851 sodium/sulphate symporter K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5
D Ddes_1277 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump
D Ddes_1596 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D Ddes_1438 major facilitator superfamily MFS_1 K08172 shiA; MFS transporter, MHS family, shikimate and dehydroshikimate transport protein
D Ddes_0333 major facilitator superfamily MFS_1 K08177 oxlT; MFS transporter, OFA family, oxalate/formate antiporter
D Ddes_0416 major facilitator superfamily MFS_1 K25494 nimT; MFS transporter, CP family, 2-nitroimidazole transporter
D Ddes_1684 major facilitator superfamily MFS_1 K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC
D Ddes_1339 major facilitator superfamily MFS_1 K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D Ddes_2226 major facilitator superfamily MFS_1 K08159 sotB; MFS transporter, DHA1 family, L-arabinose/isopropyl-beta-D-thiogalactopyranoside export protein
D Ddes_0194 major facilitator superfamily MFS_1 K08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein
D Ddes_2341 major facilitator superfamily MFS_1 K08223 fsr; MFS transporter, FSR family, fosmidomycin resistance protein
D Ddes_1414 major facilitator superfamily MFS_1 K08369 ydjE; MFS transporter, putative metabolite:H+ symporter
D Ddes_1796 phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D Ddes_1795 phosphocarrier, HPr family K02784 ptsH; phosphocarrier protein HPr
D Ddes_0971 PTS system fructose subfamily IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D Ddes_1794 PTS system mannose/fructose/sorbose family IID component K02796 manZ; mannose PTS system EIID component
D Ddes_1489 Ion transport 2 domain protein K10716 kch; voltage-gated potassium channel
D Ddes_1147 ammonium transporter K03320 amt; ammonium transporter, Amt family
D Ddes_0933 formate/nitrite transporter K06212 focA; formate transporter
D Ddes_0207 MscS Mechanosensitive ion channel K05802 mscK; potassium-dependent mechanosensitive channel
D Ddes_2220 MscS Mechanosensitive ion channel K16052 ynaI; MscS family membrane protein
D Ddes_0809 magnesium transporter K06213 mgtE; magnesium transporter
D Ddes_2179 flagellar motor protein MotA K02556 motA; chemotaxis protein MotA
D Ddes_2180 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
D Ddes_1344 Biopolymer transport protein ExbD/TolR K03559 exbD; biopolymer transport protein ExbD
D Ddes_1459 MotA/TolQ/ExbB proton channel K03562 tolQ; biopolymer transport protein TolQ
D Ddes_0862 protein TolQ K03562 tolQ; biopolymer transport protein TolQ
D Ddes_1460 Biopolymer transport protein ExbD/TolR K03560 tolR; biopolymer transport protein TolR
D Ddes_0861 protein TolR K03560 tolR; biopolymer transport protein TolR
D Ddes_1125 CrcB protein K06199 crcB; fluoride exporter
D Ddes_1046 surface antigen msp4 family protein K16079 omp31; outer membrane immunogenic protein
D Ddes_1976 OmpA/MotB domain protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D Ddes_1710 membrane protein involved in aromatic hydrocarbon degradation K06076 fadL; long-chain fatty acid transport protein
D Ddes_0993 TonB-dependent receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins
D Ddes_1516 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D Ddes_0429 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D Ddes_1343 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D Ddes_0863 outer membrane efflux protein K12340 tolC; outer membrane protein
D Ddes_0634 type I secretion outer membrane protein, TolC family K12543 lapE; outer membrane protein, adhesin transport system
D Ddes_0309 RND efflux system, outer membrane lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system
D Ddes_0611 outer membrane protein assembly complex, YaeT protein K07277 SAM50; outer membrane protein insertion porin family
D Ddes_1201 outer membrane assembly lipoprotein YfiO K05807 bamD; outer membrane protein assembly factor BamD
D Ddes_0465 surface antigen (D15) K07278 tamA; translocation and assembly module TamA
D Ddes_0464 protein of unknown function DUF490 K09800 tamB; translocation and assembly module TamB
D Ddes_2337 hypothetical protein K21449 ata; trimeric autotransporter adhesin
D Ddes_1936 CBS domain containing protein K06189 corC; hemolysin (HlyC) family protein
D Ddes_0211 LrgA family protein K06518 cidA; holin-like protein
D Ddes_1361 microcompartments protein K04027 eutM; ethanolamine utilization protein EutM
D Ddes_1368 microcompartments protein K04027 eutM; ethanolamine utilization protein EutM
D Ddes_0642 amino acid permease-associated region K11734 aroP; aromatic amino acid transport protein AroP
D Ddes_0983 amino acid permease-associated region K11737 cycA; D-serine/D-alanine/glycine transporter
D Ddes_0047 amino acid permease-associated region K20265 gadC; glutamate:GABA antiporter
D Ddes_0046 amino acid permease-associated region K20265 gadC; glutamate:GABA antiporter
D Ddes_2148 zinc/iron permease K07238 TC.ZIP; zinc transporter, ZIP family
D Ddes_0308 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump
D Ddes_0733 acriflavin resistance protein K07788 mdtB; multidrug efflux pump
D Ddes_0734 acriflavin resistance protein K07789 mdtC; multidrug efflux pump
D Ddes_2072 small multidrug resistance protein K03297 emrE; small multidrug resistance pump
D Ddes_2158 small multidrug resistance protein K11741 sugE; quaternary ammonium compound-resistance protein SugE
D Ddes_2191 small multidrug resistance protein K18924 ykkC; paired small multidrug resistance pump
D Ddes_2190 small multidrug resistance protein K18925 ykkD; paired small multidrug resistance pump
D Ddes_1813 small multidrug resistance protein K11742 mdtI; spermidine export protein MdtI
D Ddes_1812 small multidrug resistance protein K11743 mdtJ; spermidine export protein MdtJ
D Ddes_1399 protein of unknown function DUF6 transmembrane K03298 TC.DME; drug/metabolite transporter, DME family
D Ddes_0202 protein of unknown function DUF606 K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D Ddes_1598 protein of unknown function UPF0060 K09771 TC.SMR3; small multidrug resistance family-3 protein
D Ddes_2169 L-lactate transport K03303 lutP; lactate permease
D Ddes_2170 L-lactate transport K03303 lutP; lactate permease
D Ddes_0594 sodium/calcium exchanger membrane region K07301 yrbG; cation:H+ antiporter
D Ddes_1507 sodium:dicarboxylate symporter K11103 dctA; aerobic C4-dicarboxylate transport protein
D Ddes_0988 sodium/hydrogen exchanger K26735 KEA4_5_6; K+:H+ antiporter
D Ddes_0629 H(+)-transporting two-sector ATPase K03498 trkH; trk/ktr system potassium uptake protein
D Ddes_0630 TrkA-N domain protein K03499 trkA; trk/ktr system potassium uptake protein
D Ddes_0997 uracil-xanthine permease K02824 uraA; uracil permease
D Ddes_0281 Xanthine/uracil/vitamin C permease K06901 pbuG; adenine/guanine/hypoxanthine permease
D Ddes_1135 aromatic amino acid transporter K03835 mtr; tryptophan-specific transport protein
D Ddes_0295 benzoate transporter K05782 benE; benzoate membrane transport protein
D Ddes_0318 Chloride channel core K03281 clcA; chloride channel protein, CIC family
D Ddes_2081 sulphate transporter K03321 TC.SULP; sulfate permease, SulP family
D Ddes_1523 TRAP dicarboxylate transporter, DctM subunit K21393 yiaN; TRAP-type transport system large permease protein
D Ddes_1524 Tripartite ATP-independent periplasmic transporter DctQ component K21394 yiaM; TRAP-type transport system small permease protein
D Ddes_1525 TRAP dicarboxylate transporter-DctP subunit K21395 yiaO; TRAP-type transport system periplasmic protein
D Ddes_2113 hypothetical protein K05569 mnhE; multicomponent Na+:H+ antiporter subunit E
D Ddes_0654 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase
D Ddes_0736 virulence factor MVIN family protein K03980 murJ; putative peptidoglycan lipid II flippase
D Ddes_1706 Auxin Efflux Carrier K13936 mdcF; malonate transporter and related proteins
D Ddes_2077 Auxin Efflux Carrier K13936 mdcF; malonate transporter and related proteins
D Ddes_2224 K potassium transporter K03549 kup; KUP system potassium uptake protein
D Ddes_0523 AzlC family protein K26605 azlC; branched chain amino acid efflux pump
D Ddes_0522 branched-chain amino acid transport K26606 azlD; branched chain amino acid efflux pump
D Ddes_2377 protein of unknown function DUF112 transmembrane K07793 tctA; putative tricarboxylic transport membrane protein
D Ddes_2378 conserved hypothetical protein K07794 tctB; putative tricarboxylic transport membrane protein
D Ddes_2376 conserved hypothetical protein K07795 tctC; putative tricarboxylic transport membrane protein
D Ddes_0370 protein of unknown function DUF165 K09125 yhhQ; queuosine precursor transporter
D Ddes_1112 cell division protein FtsW K03588 ftsW; cell division protein FtsW
D Ddes_1699 protein of unknown function DUF204 K23242 mntP; manganese efflux pump family protein
D Ddes_1512 TonB family protein K03832 tonB; periplasmic protein TonB
D Ddes_1461 TonB family protein K03832 tonB; periplasmic protein TonB
D Ddes_2085 TonB family protein K03832 tonB; periplasmic protein TonB
D Ddes_0857 peptidoglycan-associated lipoprotein K03640 pal; peptidoglycan-associated lipoprotein
D Ddes_0860 protein TolA K03646 tolA; colicin import membrane protein
D Ddes_0858 WD40 domain protein beta Propeller K03641 tolB; TolB protein
D Ddes_1667 Formate dehydrogenase K08352 phsA; thiosulfate reductase / polysulfide reductase chain A [EC:1.8.5.5]
D Ddes_1000 Multidrug resistance efflux pump-like protein K03543 emrA; membrane fusion protein, multidrug efflux system
D Ddes_0636 type I secretion membrane fusion protein, HlyD family K12542 lapC; membrane fusion protein, adhesin transport system
D Ddes_0307 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Ddes_0732 efflux transporter, RND family, MFP subunit K07799 mdtA; membrane fusion protein, multidrug efflux system
D Ddes_0900 efflux transporter, RND family, MFP subunit K07799 mdtA; membrane fusion protein, multidrug efflux system
D Ddes_0644 FeoA family protein K04758 feoA; ferrous iron transport protein A
D Ddes_0645 FeoA family protein K04758 feoA; ferrous iron transport protein A
D Ddes_1750 FeoA family protein K04758 feoA; ferrous iron transport protein A
D Ddes_0646 small GTP-binding protein K04759 feoB; ferrous iron transport protein B
D Ddes_1585 ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B
D Ddes_2368 cytochrome c assembly protein K02198 ccmF; cytochrome c-type biogenesis protein CcmF
D Ddes_0478 MltA-interacting MipA family protein K07274 mipA; MipA family protein
C 02044 Secretion system [BR:dds02044]
D Ddes_0863 outer membrane efflux protein K12340 tolC; outer membrane protein
D Ddes_0635 type I secretion system ATPase K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D Ddes_0636 type I secretion membrane fusion protein, HlyD family K12542 lapC; membrane fusion protein, adhesin transport system
D Ddes_0634 type I secretion outer membrane protein, TolC family K12543 lapE; outer membrane protein, adhesin transport system
D Ddes_1901 protein of unknown function YGGT K02221 yggT; YggT family protein
D Ddes_1618 CMP/dCMP deaminase zinc-binding K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D Ddes_1798 ComEC/Rec2-related protein K02238 comEC; competence protein ComEC
D Ddes_0331 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D Ddes_0332 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D Ddes_1573 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D Ddes_1569 ATPase FliI/YscN K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D Ddes_0375 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D Ddes_0376 flagellar biosynthesis protein FliO K02418 fliO; flagellar protein FliO/FliZ
D Ddes_0377 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D Ddes_0378 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D Ddes_0193 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D Ddes_1316 PpkA-related protein K11912 ppkA; serine/threonine-protein kinase PpkA [EC:2.7.11.1]
D Ddes_1709 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D Ddes_1929 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D Ddes_1630 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D Ddes_1928 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D Ddes_1177 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D Ddes_0680 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D Ddes_1804 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D Ddes_0656 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D Ddes_1930 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D Ddes_1967 YidC translocase/secretase K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Ddes_1121 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA
D Ddes_1724 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA
D Ddes_1807 twin-arginine translocation protein, TatB subunit K03117 tatB; sec-independent protein translocase protein TatB
D Ddes_1808 Sec-independent protein translocase, TatC subunit K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:dds02042]
C 02022 Two-component system [BR:dds02022]
D Ddes_0568 histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Ddes_0567 two component transcriptional regulator, winged helix family K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D Ddes_0816 response regulator receiver protein K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D Ddes_1680 osmosensitive K+ channel signal transduction histidine kinase K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D Ddes_1681 two component transcriptional regulator, winged helix family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D Ddes_2272 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator
D Ddes_0814 response regulator receiver protein K02483 K02483; two-component system, OmpR family, response regulator
D Ddes_1535 signal transduction histidine kinase regulating citrate/malate metabolism K11614 yufL; two-component system, CitB family, sensor histidine kinase MalK [EC:2.7.13.3]
D Ddes_0186 histidine kinase K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3]
D Ddes_0768 PAS/PAC sensor signal transduction histidine kinase K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3]
D Ddes_0852 histidine kinase K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3]
D Ddes_0187 two component, sigma54 specific, transcriptional regulator, Fis family K07713 zraR; two-component system, NtrC family, response regulator HydG
D Ddes_0769 two component, sigma54 specific, transcriptional regulator, Fis family K07713 zraR; two-component system, NtrC family, response regulator HydG
D Ddes_1567 histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D Ddes_0813 histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D Ddes_0084 putative two component, sigma54 specific, transcriptional regulator, Fis family K02481 flgR; two-component system, NtrC family, response regulator
D Ddes_0853 two component, sigma54 specific, transcriptional regulator, Fis family K02481 flgR; two-component system, NtrC family, response regulator
D Ddes_1383 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Ddes_0324 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Ddes_1382 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Ddes_1377 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Ddes_0147 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D Ddes_0197 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D Ddes_2084 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D Ddes_0810 two component transcriptional regulator, LuxR family K14979 ssrB; two-component system, LuxR family, secretion system response regulator SsrB
D Ddes_2381 two component, sigma54 specific, transcriptional regulator, Fis family K10943 flrC; two-component system, response regulator FlrC
D Ddes_1875 Hpt protein K20976 hptB; histidine phosphotransfer protein HptB
C 02035 Bacterial motility proteins [BR:dds02035]
D Ddes_1383 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Ddes_2175 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D Ddes_1022 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D Ddes_1381 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D Ddes_1379 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D Ddes_1377 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Ddes_0324 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Ddes_1382 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Ddes_0389 putative chemotaxis phosphatase, CheZ K03414 cheZ; chemotaxis protein CheZ
D Ddes_0147 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D Ddes_0197 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D Ddes_2084 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D Ddes_0945 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Ddes_0086 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein
D Ddes_0038 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Ddes_0183 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Ddes_0349 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Ddes_0166 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein
D Ddes_0285 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein
D Ddes_0300 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Ddes_0301 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein
D Ddes_0821 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Ddes_1580 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Ddes_2149 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Ddes_0134 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Ddes_2112 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Ddes_1569 ATPase FliI/YscN K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D Ddes_0698 flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ
D Ddes_0376 flagellar biosynthesis protein FliO K02418 fliO; flagellar protein FliO/FliZ
D Ddes_0377 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D Ddes_0378 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D Ddes_0193 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D Ddes_0331 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D Ddes_0332 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D Ddes_1571 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D Ddes_1836 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D Ddes_0375 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D Ddes_1573 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D Ddes_2004 flagellar P-ring protein K02394 flgI; flagellar P-ring protein FlgI
D Ddes_0393 flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D Ddes_0394 flagellar L-ring protein K02393 flgH; flagellar L-ring protein FlgH
D Ddes_0373 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL
D Ddes_0323 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL
D Ddes_1574 flagellar hook-basal body complex subunit FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D Ddes_1259 flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D Ddes_1576 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D Ddes_1575 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D Ddes_1260 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D Ddes_0391 protein of unknown function DUF1078 domain protein K02391 flgF; flagellar basal-body rod protein FlgF
D Ddes_0392 flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D Ddes_2003 flagellar protein FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ
D Ddes_2091 protein of unknown function DUF1078 domain protein K02390 flgE; flagellar hook protein FlgE
D Ddes_1261 protein of unknown function DUF1078 domain protein K02390 flgE; flagellar hook protein FlgE
D Ddes_2001 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D Ddes_2000 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D Ddes_2282 flagellin domain protein K02406 fliC; flagellin
D Ddes_1028 flagellin domain protein K02406 fliC; flagellin
D Ddes_2280 flagellin domain protein K02406 fliC; flagellin
D Ddes_0529 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D Ddes_0325 RNA polymerase, sigma 28 subunit, FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA
D Ddes_2179 flagellar motor protein MotA K02556 motA; chemotaxis protein MotA
D Ddes_2180 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
D Ddes_1305 sigma54 specific transcriptional regulator, Fis family K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D Ddes_2381 two component, sigma54 specific, transcriptional regulator, Fis family K10943 flrC; two-component system, response regulator FlrC
D Ddes_1998 protein of unknown function DUF180 K13626 fliW; flagellar assembly factor FliW
D Ddes_2005 anti-sigma-28 factor, FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D Ddes_0327 GTP-binding signal recognition particle SRP54 G-domain protein K02404 flhF; flagellar biosynthesis protein FlhF
D Ddes_0326 Cobyrinic acid ac-diamide synthase K04562 flhG; flagellar biosynthesis protein FlhG
D Ddes_1940 Cobyrinic acid ac-diamide synthase K04562 flhG; flagellar biosynthesis protein FlhG
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:dds04812]
D Ddes_1868 protein of unknown function DUF52 K06990 MEMO1; MEMO1 family protein
D Ddes_0164 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins
D Ddes_1172 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins
D Ddes_1118 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D Ddes_1117 cell division protein FtsA K03590 ftsA; cell division protein FtsA
D Ddes_0435 Cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein
D Ddes_1380 Cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein
D Ddes_0017 Cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein
D Ddes_0015 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:dds04147]
D Ddes_2197 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG
D Ddes_2216 Phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Ddes_0156 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Ddes_0132 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Ddes_0479 Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D Ddes_1103 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Ddes_1548 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Ddes_2151 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D Ddes_0851 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Ddes_1805 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D Ddes_1628 translation elongation factor Tu K02358 tuf; elongation factor Tu
D Ddes_1253 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Ddes_0039 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D Ddes_1956 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D Ddes_1094 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D Ddes_1095 Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D Ddes_1197 Inositol phosphatase/fructose-16-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D Ddes_1321 alpha amylase all-beta K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D Ddes_1347 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D Ddes_1149 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Ddes_1593 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Ddes_0288 Porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D Ddes_2264 Phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D Ddes_0151 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Ddes_2347 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Ddes_1416 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Ddes_1176 Triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
C 02048 Prokaryotic defense system [BR:dds02048]
D Ddes_0928 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
D Ddes_0929 CRISPR-associated protein Cas2 K09951 cas2; CRISPR-associated protein Cas2
D Ddes_0922 CRISPR-associated helicase Cas3 K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D Ddes_0923 CRISPR-associated protein, Cse1 family K19123 casA; CRISPR system Cascade subunit CasA
D Ddes_0924 CRISPR-associated protein, Cse2 family K19046 casB; CRISPR system Cascade subunit CasB
D Ddes_0926 CRISPR-associated protein, Cse4 family K19124 casC; CRISPR system Cascade subunit CasC
D Ddes_0927 CRISPR-associated protein Cas5 family K19125 casD; CRISPR system Cascade subunit CasD
D Ddes_0925 CRISPR-associated protein, Cse3 family K19126 casE; CRISPR system Cascade subunit CasE
D Ddes_2243 DNA methylase N-4/N-6 domain protein K00571 E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]
D Ddes_0271 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Ddes_0272 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Ddes_1118 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D Ddes_0164 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins
D Ddes_1172 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins
D Ddes_0192 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Ddes_1769 glutamyl-tRNA synthetase class Ic K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Ddes_1075 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules [BR:dds04090]
C 01504 Antimicrobial resistance genes [BR:dds01504]
D Ddes_2109 ABC transporter related K19350 lsa; lincosamide and streptogramin A transport system ATP-binding/permease protein
D Ddes_0194 major facilitator superfamily MFS_1 K08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein
D Ddes_0307 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Ddes_0308 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump
D Ddes_0309 RND efflux system, outer membrane lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system
D Ddes_0863 outer membrane efflux protein K12340 tolC; outer membrane protein
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:dds03100]
D Ddes_R0017 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Ddes_R0066 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Ddes_R0009 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Ddes_R0039 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Ddes_R0057 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Ddes_R0067 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Ddes_R0026 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Ddes_R0033 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Ddes_R0053 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Ddes_R0024 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D Ddes_R0002 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D Ddes_R0020 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D Ddes_R0046 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D Ddes_R0028 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D Ddes_R0027 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Ddes_R0035 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Ddes_R0048 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Ddes_R0019 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Ddes_R0021 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Ddes_R0018 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Ddes_R0051 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Ddes_R0063 tRNA-His K14226 tRNA-His; tRNA His
D Ddes_R0008 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D Ddes_R0040 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D Ddes_R0058 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D Ddes_R0029 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Ddes_R0023 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Ddes_R0016 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Ddes_R0013 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Ddes_R0043 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Ddes_R0030 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Ddes_R0004 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Ddes_R0045 tRNA-Met K14230 tRNA-Met; tRNA Met
D Ddes_R0068 tRNA-Met K14230 tRNA-Met; tRNA Met
D Ddes_R0065 tRNA-Met K14230 tRNA-Met; tRNA Met
D Ddes_R0006 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D Ddes_R0042 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Ddes_R0064 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Ddes_R0044 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Ddes_R0014 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Ddes_R0005 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Ddes_R0031 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Ddes_R0001 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Ddes_R0022 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Ddes_R0062 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Ddes_R0049 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Ddes_R0052 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D Ddes_R0050 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D Ddes_R0047 tRNA-Val K14237 tRNA-Val; tRNA Val
D Ddes_R0003 tRNA-Val K14237 tRNA-Val; tRNA Val
D Ddes_R0015 tRNA-Val K14237 tRNA-Val; tRNA Val
D Ddes_R0061 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D Ddes_R0059 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Ddes_R0007 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Ddes_R0041 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Ddes_R0010 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Ddes_R0038 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Ddes_R0056 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Ddes_R0012 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Ddes_R0054 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Ddes_R0036 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Ddes_R0055 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Ddes_R0037 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Ddes_R0011 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Ddes_R0025 ffs; SRP RNA; RNA component of signal recognitionparti cle K01983 ffs; SRP RNA
D Ddes_R0034 rnpB; RNA component of RNaseP K01978 rnpB; M1 RNA
D Ddes_R0032 ssrA; tmRNA as predicted by Rfam (RF00023), score 225.59 K15035 ssrA; transfer-messenger RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D Ddes_0443 indolepyruvate ferredoxin oxidoreductase, alpha subunit K00179 iorA; indolepyruvate ferredoxin oxidoreductase, alpha subunit [EC:1.2.7.8]
D Ddes_0444 Indolepyruvate ferredoxin oxidoreductase K00180 iorB; indolepyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.8]
D Ddes_1823 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding K07469 mop; aldehyde oxidoreductase [EC:1.2.99.7]
D Ddes_0477 dihydrodipicolinate reductase K25950 amdH; secondary-alkyl amine dehydrogenase [NAD(P)+] [EC:1.4.1.28]
D Ddes_1949 peptide methionine sulfoxide reductase K12267 msrAB; peptide methionine sulfoxide reductase msrA/msrB [EC:1.8.4.11 1.8.4.12]
D Ddes_1011 Redoxin domain protein K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D Ddes_0602 peroxiredoxin K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26]
D Ddes_0076 Dyp-type peroxidase family K07223 yfeX; porphyrinogen peroxidase [EC:1.11.1.-]
D Ddes_1038 nickel-dependent hydrogenase large subunit K00437 hydB; [NiFe] hydrogenase large subunit [EC:1.12.2.1]
D Ddes_1039 hydrogenase (NiFe) small subunit HydA K18008 hydA; [NiFe] hydrogenase small subunit [EC:1.12.2.1]
D Ddes_1503 hydrogenase, Fe-only K00533 E1.12.7.2L; ferredoxin hydrogenase large subunit [EC:1.12.7.2]
D Ddes_1502 Ferredoxin hydrogenase K00534 E1.12.7.2S; ferredoxin hydrogenase small subunit [EC:1.12.7.2]
D Ddes_1882 NADH ubiquinone oxidoreductase 20 kDa subunit K18023 mbhJ; membrane-bound hydrogenase subunit mbhJ [EC:1.12.7.2]
D Ddes_1007 Pirin domain protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D Ddes_2010 desulfoferrodoxin K05919 dfx; superoxide reductase [EC:1.15.1.2]
D Ddes_1983 oxidoreductase FAD/NAD(P)-binding domain protein K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D Ddes_0118 Glycine reductase K10670 grdA; glycine/sarcosine/betaine reductase complex component A [EC:1.21.4.2 1.21.4.3 1.21.4.4]
D Ddes_0112 Sarcosine reductase K10671 grdE; glycine reductase complex component B subunit alpha and beta [EC:1.21.4.2]
D Ddes_0113 selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family K10672 grdB; glycine reductase complex component B subunit gamma [EC:1.21.4.2]
D Ddes_0116 Glycine reductase K21576 grdD; glycine/sarcosine/betaine reductase complex component C subunit alpha [EC:1.21.4.2 1.21.4.3 1.21.4.4]
D Ddes_0115 Betaine reductase K21577 grdC; glycine/sarcosine/betaine reductase complex component C subunit beta [EC:1.21.4.2 1.21.4.3 1.21.4.4]
D Ddes_1818 Radical SAM domain protein K06937 E1.21.98.5; tetraether lipid synthase [EC:1.21.98.5]
D Ddes_1073 anaerobic ribonucleoside-triphosphate reductase activating protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]
D Ddes_1841 Radical SAM domain protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D Ddes_1358 glycyl-radical enzyme activating protein family K20037 cutD; choline trimethylamine-lyase activating enzyme [EC:1.97.1.-]
D Ddes_0778 NADH dehydrogenase (quinone) K12137 hyfB; hydrogenase-4 component B [EC:1.-.-.-]
D Ddes_0776 NAD-dependent dehydrogenase subunit K12140 hyfE; hydrogenase-4 component E [EC:1.-.-.-]
D Ddes_0775 NADH dehydrogenase (quinone) K12141 hyfF; hydrogenase-4 component F [EC:1.-.-.-]
D Ddes_1190 protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D Ddes_1831 Cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D Ddes_2046 transferase hexapeptide repeat containing protein K00633 lacA; galactoside O-acetyltransferase [EC:2.3.1.18]
D Ddes_1937 apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D Ddes_1578 hypothetical protein K22797 octT; diglucosylglycerate octanoyltransferase [EC:2.3.1.273]
D Ddes_2340 GCN5-related N-acetyltransferase K03826 yiaC; putative acetyltransferase [EC:2.3.1.-]
D Ddes_0463 GCN5-related N-acetyltransferase K03827 yjaB; putative acetyltransferase [EC:2.3.1.-]
D Ddes_1428 leucyl/phenylalanyl-tRNA/protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D Ddes_1726 modD protein K03813 modD; molybdenum transport protein [EC:2.4.2.-]
D Ddes_2382 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase K06898 larB; pyridinium-3,5-biscarboxylic acid mononucleotide synthase [EC:2.5.1.143]
D Ddes_0499 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D Ddes_1244 ApbE family lipoprotein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D Ddes_2352 RNA-directed DNA polymerase K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D Ddes_1715 protein of unknown function DUF147 K18672 dacA; diadenylate cyclase [EC:2.7.7.85]
D Ddes_1539 Non-specific serine/threonine protein kinase K08282 E2.7.11.1; non-specific serine/threonine protein kinase [EC:2.7.11.1]
D Ddes_0080 conserved hypothetical protein K18700 flK; fluoroacetyl-CoA thioesterase [EC:3.1.2.29]
D Ddes_0605 thioesterase superfamily protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D Ddes_1744 PHP domain protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D Ddes_1557 metal dependent phosphohydrolase K07037 pgpH; cyclic-di-AMP phosphodiesterase PgpH [EC:3.1.4.-]
D Ddes_1054 response regulator receiver modulated metal dependent phosphohydrolase K07814 K07814; cyclic di-GMP phosphodiesterase [EC:3.1.4.-]
D Ddes_1140 metal dependent phosphohydrolase K25135 K25135; cyclic di-GMP phosphodiesterase [EC:3.1.4.-]
D Ddes_1458 Deoxyribonuclease I K01150 endA; deoxyribonuclease I [EC:3.1.21.1]
D Ddes_0780 hydrolase, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D Ddes_1084 nuclease (SNase domain protein) K01174 nuc; micrococcal nuclease [EC:3.1.31.1]
D Ddes_1584 nuclease (SNase domain protein) K01174 nuc; micrococcal nuclease [EC:3.1.31.1]
D Ddes_0284 Serine-type D-Ala-D-Ala carboxypeptidase K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4]
D Ddes_0011 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D Ddes_0123 polysaccharide deacetylase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D Ddes_1549 UV-endonuclease UvdE K13281 uvsE; UV DNA damage endonuclease [EC:3.-.-.-]
D Ddes_0902 sugar kinase K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D Ddes_1143 carbohydrate kinase, YjeF related protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D Ddes_2043 diaminopropionate ammonia-lyase K01751 E4.3.1.15; diaminopropionate ammonia-lyase [EC:4.3.1.15]
D Ddes_1357 Formate C-acetyltransferase K20038 cutC; choline trimethylamine-lyase [EC:4.3.99.4]
D Ddes_0092 conserved hypothetical protein K06864 larE; pyridinium-3,5-biscarboxylic acid mononucleotide sulfurtransferase [EC:4.4.1.37]
D Ddes_1915 protein of unknown function DUF111 K09121 larC; pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel chelatase [EC:4.99.1.12]
D Ddes_1594 peptidylprolyl isomerase FKBP-type K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8]
D Ddes_0546 CoA-substrate-specific enzyme activase K23876 hgdC; (R)-2-hydroxyacyl-CoA dehydratese activating ATPase [EC:5.6.1.9]
D Ddes_1239 NQR2 and RnfD family protein K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2]
D Ddes_1238 Respiratory-chain NADH dehydrogenase domain 51 kDa subunit K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2]
D Ddes_1243 4Fe-4S ferredoxin iron-sulfur binding domain protein K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
D Ddes_1265 heavy metal translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
D Ddes_1703 magnesium-translocating P-type ATPase K01531 mgtA; P-type Mg2+ transporter [EC:7.2.2.14]
C 99981 Carbohydrate metabolism
D Ddes_2246 sugar fermentation stimulation protein K06206 sfsA; sugar fermentation stimulation protein A
D Ddes_1916 CBS domain containing membrane protein K04767 acuB; acetoin utilization protein AcuB
D Ddes_1533 CBS domain containing membrane protein K04767 acuB; acetoin utilization protein AcuB
D Ddes_1992 protein of unknown function DUF162 K00782 lldG; L-lactate dehydrogenase complex protein LldG
C 99982 Energy metabolism
D Ddes_0829 formate dehydrogenase family accessory protein FdhD K02379 fdhD; FdhD protein
D Ddes_1240 FMN-binding domain protein K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G
D Ddes_1241 electron transport complex, RnfABCDGE type, E subunit K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E
D Ddes_1242 electron transport complex, RnfABCDGE type, A subunit K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A
D Ddes_1076 Fe-S cluster assembly protein NifU K13819 K13819; NifU-like protein
D Ddes_0575 Radical SAM domain protein K02585 nifB; nitrogen fixation protein NifB
D Ddes_2127 heterodisulfide reductase, putative K16885 qmoA; quinone-modifying oxidoreductase, subunit QmoA
D Ddes_2126 methyl-viologen-reducing hydrogenase delta subunit K16886 qmoB; quinone-modifying oxidoreductase, subunit QmoB
D Ddes_2125 heterodisulfide reductase, transmembrane subunit, putative K16887 qmoC; quinone-modifying oxidoreductase, subunit QmoC
D Ddes_1951 flavodoxin K03839 fldA; flavodoxin I
D Ddes_1673 NADH dehydrogenase (quinone) K14086 echA; ech hydrogenase subunit A
D Ddes_1672 respiratory-chain NADH dehydrogenase subunit 1 K14087 echB; ech hydrogenase subunit B
D Ddes_1671 NADH ubiquinone oxidoreductase 20 kDa subunit K14088 echC; ech hydrogenase subunit C
D Ddes_1670 NADH dehydrogenase (ubiquinone) 30 kDa subunit K14089 echD; ech hydrogenase subunit D
D Ddes_1669 NADH-ubiquinone oxidoreductase chain 49kDa K14090 echE; ech hydrogenase subunit E
D Ddes_1885 NADH dehydrogenase (quinone) K14090 echE; ech hydrogenase subunit E
D Ddes_1668 4Fe-4S ferredoxin iron-sulfur binding domain protein K14091 echF; ech hydrogenase subunit F
D Ddes_0618 4Fe-4S ferredoxin iron-sulfur binding domain protein K02573 napG; ferredoxin-type protein NapG
D Ddes_0619 quinol dehydrogenase membrane component K02574 napH; ferredoxin-type protein NapH
D Ddes_0576 4Fe-4S ferredoxin iron-sulfur binding domain protein K02574 napH; ferredoxin-type protein NapH
D Ddes_1917 sulfur relay protein, TusE/DsrC/DsvC family K23077 dsrC; dissimilatory sulfite reductase related protein
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D Ddes_1363 ethanolamine utilization protein EutJ family protein K04024 eutJ; ethanolamine utilization protein EutJ
D Ddes_1373 ethanolamine utilization protein EutP K04029 eutP; ethanolamine utilization protein EutP
D Ddes_1372 microcompartments protein K04031 eutS; ethanolamine utilization protein EutS
D Ddes_0372 alanine racemase domain protein K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
D Ddes_1182 hypothetical protein K08992 lapA; lipopolysaccharide assembly protein A
D Ddes_1045 conserved hypothetical protein K07027 K07027; glycosyltransferase 2 family protein
C 99987 Cofactor metabolism
D Ddes_1370 Respiratory-chain NADH dehydrogenase domain 51 kDa subunit K27271 pduS; cobalamin reductase
C 99988 Secondary metabolism
D Ddes_0079 NAD(P)H dehydrogenase (quinone) K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone)
C 99999 Others
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D Ddes_1405 protein of unknown function DUF370 K09777 remA; extracellular matrix regulatory protein A
C 99974 Translation
D Ddes_2033 beta-lactamase domain protein K07576 K07576; metallo-beta-lactamase family protein
C 99975 Protein processing
D Ddes_1430 ATP-dependent Clp protease adaptor protein ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D Ddes_0690 trigger factor K03545 tig; trigger factor
D Ddes_0557 formate dehydrogenase accessory protein K02380 fdhE; FdhE protein
D Ddes_1797 SsrA-binding protein K03664 smpB; SsrA-binding protein
D Ddes_0384 hydrogenase assembly chaperone hypC/hupF K04653 hypC; hydrogenase expression/formation protein HypC
D Ddes_0801 hydrogenase formation HypD protein K04654 hypD; hydrogenase expression/formation protein HypD
D Ddes_0800 hydrogenase expression/formation protein HypE K04655 hypE; hydrogenase expression/formation protein HypE
D Ddes_2326 (NiFe) hydrogenase maturation protein HypF K04656 hypF; hydrogenase maturation protein HypF
D Ddes_0283 Mg chelatase, subunit ChlI K07391 comM; magnesium chelatase family protein
D Ddes_0153 OsmC family protein K07397 yhfA; putative redox protein
D Ddes_1698 OsmC family protein K07397 yhfA; putative redox protein
D Ddes_0305 protein of unknown function DUF182 K07402 xdhC; xanthine dehydrogenase accessory factor
C 99976 Replication and repair
D Ddes_1625 DNA repair protein RadC K03630 radC; DNA repair protein RadC
D Ddes_1792 protein of unknown function UPF0102 K07460 yraN; putative endonuclease
D Ddes_1608 Excinuclease ABC C subunit domain protein K07461 K07461; putative endonuclease
D Ddes_0966 DNA protecting protein DprA K04096 smf; DNA processing protein
D Ddes_0719 conserved hypothetical protein K06909 xtmB; phage terminase large subunit
D Ddes_1168 AAA ATPase central domain protein K07478 ycaJ; putative ATPase
D Ddes_1225 protein of unknown function DUF927 K06919 K06919; putative DNA primase/helicase
D Ddes_1262 Integrase catalytic region K07497 K07497; putative transposase
D Ddes_0274 Integrase catalytic region K07497 K07497; putative transposase
D Ddes_0275 transposase IS3/IS911 family protein K07497 K07497; putative transposase
D Ddes_0943 transposase IS3/IS911 family protein K07497 K07497; putative transposase
D Ddes_2354 Integrase catalytic region K07497 K07497; putative transposase
D Ddes_0432 Integrase catalytic region K07497 K07497; putative transposase
D Ddes_2355 transposase IS3/IS911 family protein K07497 K07497; putative transposase
D Ddes_2228 transposase IS3/IS911 family protein K07497 K07497; putative transposase
D Ddes_0431 transposase IS3/IS911 family protein K07497 K07497; putative transposase
D Ddes_0944 Integrase catalytic region K07497 K07497; putative transposase
D Ddes_1263 transposase IS3/IS911 family protein K07497 K07497; putative transposase
D Ddes_2229 Integrase catalytic region K07497 K07497; putative transposase
C 99979 Viral proteins
C 99998 Others
D Ddes_2146 conserved hypothetical protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D Ddes_1721 amino acid transporter, AAT family K03293 TC.AAT; amino acid transporter, AAT family
D Ddes_0172 amino acid permease-associated region K03293 TC.AAT; amino acid transporter, AAT family
D Ddes_2138 acriflavin resistance protein K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
D Ddes_2342 BCCT transporter K03451 TC.BCT; betaine/carnitine transporter, BCCT family
D Ddes_1960 phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family
D Ddes_0154 Na+/solute symporter K03307 TC.SSS; solute:Na+ symporter, SSS family
D Ddes_1291 Na+/solute symporter K03307 TC.SSS; solute:Na+ symporter, SSS family
D Ddes_1292 branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family
D Ddes_1136 Bile acid:sodium symporter K03453 TC.BASS; bile acid:Na+ symporter, BASS family
C 99978 Cell growth
D Ddes_0381 Cobyrinic acid ac-diamide synthase K07321 cooC; CO dehydrogenase maturation factor
D Ddes_0963 conserved hypothetical protein K06320 cgeB; spore maturation protein CgeB
D Ddes_1257 CgeB family protein K06320 cgeB; spore maturation protein CgeB
D Ddes_1966 single-stranded nucleic acid binding R3H domain protein K06346 jag; spoIIIJ-associated protein
D Ddes_2209 acylneuraminate cytidylyltransferase K07257 spsF; spore coat polysaccharide biosynthesis protein SpsF
C 99993 Cell motility
C 99995 Signaling proteins
D Ddes_2163 carbon starvation protein CstA K06200 cstA; carbon starvation protein
D Ddes_0462 GTP-binding protein TypA K06207 typA; GTP-binding protein
D Ddes_1558 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
C 99992 Structural proteins
D Ddes_1206 outer membrane lipoprotein carrier protein LolA K03634 lolA; outer membrane lipoprotein carrier protein
D Ddes_0532 VacJ family lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA
D Ddes_0608 outer membrane chaperone Skp (OmpH) K06142 hlpA; outer membrane protein
D Ddes_2078 outer membrane chaperone Skp (OmpH) K06142 hlpA; outer membrane protein
D Ddes_1955 hypothetical protein K07289 asmA; AsmA protein
D Ddes_2178 AsmA family protein K07289 asmA; AsmA protein
D Ddes_0052 protein of unknown function DUF107 K07340 ybbJ; inner membrane protein
D Ddes_1342 HlyD family secretion protein K01993 ABC-2.TX; HlyD family secretion protein
D Ddes_1099 conserved hypothetical protein K04062 osmB; osmotically inducible lipoprotein OsmB
D Ddes_2369 cytochrome c-type biogenesis protein CcmE K02197 ccmE; cytochrome c-type biogenesis protein CcmE
D Ddes_0913 conserved hypothetical protein K15539 rodZ; cytoskeleton protein RodZ
D Ddes_1371 microcompartments protein K27272 pduT; bacterial microcompartment shell protein
C 99994 Others
D Ddes_0570 phosphate uptake regulator, PhoU K02039 phoU; phosphate transport system protein
D Ddes_0199 CutA1 divalent ion tolerance protein K03926 cutA; periplasmic divalent cation tolerance protein
D Ddes_1074 hemerythrin-like metal-binding protein K07216 hr; hemerythrin
D Ddes_1895 methyl-accepting chemotaxis sensory transducer K07216 hr; hemerythrin
D Ddes_1772 molybdenum cofactor synthesis domain protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D Ddes_2050 MoeA domain protein domain I and II K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
B
B 09194 Poorly characterized
C 99996 General function prediction only
D Ddes_0552 Colicin V production protein K03558 cvpA; membrane protein required for colicin V production
D Ddes_0077 DEAD/DEAH box helicase domain protein K06877 K06877; DEAD/DEAH box helicase domain-containing protein
D Ddes_1832 membrane-bound metal-dependent hydrolase K07038 K07038; inner membrane protein
D Ddes_0501 membrane-bound metal-dependent hydrolase K07038 K07038; inner membrane protein
D Ddes_2122 SlyX family protein K03745 slyX; SlyX protein
D Ddes_1987 SNARE associated Golgi protein K03975 dedA; membrane-associated protein
D Ddes_0767 conserved hypothetical protein K08982 K08982; putative membrane protein
D Ddes_0849 SEC-C motif domain protein K09858 K09858; SEC-C motif domain protein
C 99997 Function unknown
D Ddes_0738 protein of unknown function UPF0005 K06890 K06890; uncharacterized protein
D Ddes_0987 CoA-binding domain-containing protein K06929 K06929; uncharacterized protein
D Ddes_0204 protein of unknown function DUF134 K06933 K06933; uncharacterized protein
D Ddes_0358 protein of unknown function UPF0153 K06940 K06940; uncharacterized protein
D Ddes_0986 protein of unknown function UPF0153 K06940 K06940; uncharacterized protein
D Ddes_0571 protein of unknown function UPF0153 K06940 K06940; uncharacterized protein
D Ddes_1814 hypothetical protein K06940 K06940; uncharacterized protein
D Ddes_1422 metal dependent phosphohydrolase K06951 K06951; uncharacterized protein
D Ddes_1802 conserved hypothetical protein K06960 K06960; uncharacterized protein
D Ddes_1295 protein of unknown function UPF0227 K07000 K07000; uncharacterized protein
D Ddes_0526 pyridoxamine 5'-phosphate oxidase-related FMN-binding K07005 K07005; uncharacterized protein
D Ddes_1163 pyridoxamine 5'-phosphate oxidase-related FMN-binding K07005 K07005; uncharacterized protein
D Ddes_0419 4-vinyl reductase 4VR K07013 K07013; uncharacterized protein
D Ddes_0755 4-vinyl reductase 4VR K07013 K07013; uncharacterized protein
D Ddes_1307 alpha/beta hydrolase fold protein K07019 K07019; uncharacterized protein
D Ddes_1923 SufBD protein K07033 K07033; uncharacterized protein
D Ddes_0855 amidohydrolase 2 K07045 K07045; uncharacterized protein
D Ddes_1437 amidohydrolase 2 K07045 K07045; uncharacterized protein
D Ddes_0133 domain of unknown function DUF1731 K07071 K07071; uncharacterized protein
D Ddes_0357 protein of unknown function DUF81 K07090 K07090; uncharacterized protein
D Ddes_0089 protein of unknown function DUF81 K07090 K07090; uncharacterized protein
D Ddes_0626 protein of unknown function DUF81 K07090 K07090; uncharacterized protein
D Ddes_2139 protein of unknown function DUF81 K07090 K07090; uncharacterized protein
D Ddes_1641 protein of unknown function DUF81 K07090 K07090; uncharacterized protein
D Ddes_1654 protein of unknown function DUF81 K07090 K07090; uncharacterized protein
D Ddes_0811 protein of unknown function DUF81 K07090 K07090; uncharacterized protein
D Ddes_1872 protein of unknown function DUF81 K07090 K07090; uncharacterized protein
D Ddes_1746 phosphodiesterase, MJ0936 family K07095 K07095; uncharacterized protein
D Ddes_0792 metallophosphoesterase K07096 K07096; uncharacterized protein
D Ddes_0905 conserved hypothetical protein K07112 K07112; uncharacterized protein
D Ddes_1888 Sel1 domain protein repeat-containing protein K07126 K07126; uncharacterized protein
D Ddes_1606 Sel1 domain protein repeat-containing protein K07126 K07126; uncharacterized protein
D Ddes_0178 Sel1 domain protein repeat-containing protein K07126 K07126; uncharacterized protein
D Ddes_0995 4Fe-4S ferredoxin iron-sulfur binding domain protein K07138 K07138; uncharacterized protein
D Ddes_0165 conserved hypothetical protein K07139 K07139; uncharacterized protein
D Ddes_0492 protein of unknown function DUF554 K07150 K07150; uncharacterized protein
D Ddes_1251 protein of unknown function DUF164 K07164 K07164; uncharacterized protein
D Ddes_1968 protein of unknown function DUF37 K08998 K08998; uncharacterized protein
D Ddes_0228 protein of unknown function DUF37 K08998 K08998; uncharacterized protein
D Ddes_1274 protein of unknown function DUF151 K08999 K08999; uncharacterized protein
D Ddes_0466 Domain of unknown function DUF1791 K09004 K09004; uncharacterized protein
D Ddes_1088 GatB/YqeY domain-containing protein K09117 K09117; uncharacterized protein
D Ddes_1509 protein of unknown function DUF364 K09138 K09138; uncharacterized protein
D Ddes_2292 AMMECR1 domain protein K09141 K09141; uncharacterized protein
D Ddes_1165 protein of unknown function DUF438 K09155 K09155; uncharacterized protein
D Ddes_0622 protein of unknown function DUF711 K09157 K09157; uncharacterized protein
D Ddes_0898 protein of unknown function DUF985 K09705 K09705; uncharacterized protein
D Ddes_1266 conserved hypothetical protein K09707 K09707; uncharacterized protein
D Ddes_0013 protein of unknown function DUF116 K09729 K09729; uncharacterized protein
D Ddes_1256 protein of unknown function DUF342 K09749 K09749; uncharacterized protein
D Ddes_0058 protein of unknown function DUF503 K09764 K09764; uncharacterized protein
D Ddes_1745 protein of unknown function DUF343 K09791 K09791; uncharacterized protein
D Ddes_0940 protein of unknown function DUF456 K09793 K09793; uncharacterized protein
D Ddes_0895 protein of unknown function DUF610 YibQ K09798 K09798; uncharacterized protein
D Ddes_0226 protein of unknown function DUF497 K09803 K09803; uncharacterized protein
D Ddes_1055 protein of unknown function DUF330 K09857 K09857; uncharacterized protein
D Ddes_0627 protein of unknown function DUF486 K09922 K09922; uncharacterized protein
D Ddes_1909 hypothetical protein K09937 K09937; uncharacterized protein
D Ddes_1597 conserved hypothetical protein K01163 K01163; uncharacterized protein
D Ddes_1961 conserved hypothetical protein K07220 K07220; uncharacterized protein
D Ddes_0060 protein of unknown function DUF448 K07742 ylxR; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024