+D GENES KO
#
KEGG Orthology (KO) - Roseobacter denitrificans
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:rde00010]
D RD1_3776 glk; glucokinase, putative K00845 glk; glucokinase [EC:2.7.1.2]
D RD1_2720 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RD1_2537 glpX; fructose-1,6-bisphosphatase, class II K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37]
D RD1_2270 fda; fructose-bisphosphate aldolase, class I K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D RD1_0218 fba; fructose-bisphosphate aldolase, putative K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RD1_2961 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D RD1_2880 gap; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D RD1_2984 gap; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D RD1_3008 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D RD1_0335 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D RD1_3142 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D RD1_1007 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D RD1_1948 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D RD1_3011 pdhA; pyruvate dehydrogenase complex, E1 component, alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D RD1_3013 pdhB; pyruvate dehydrogenase complex, E1 component, beta subunit K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D RD1_3014 pdhC; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D RD1_1603 lpdA; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RD1_2995 lpdA; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RD1_3670 pyridine nucleotide-disulfide oxidoreductase, putative K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RD1_0887 flhA; glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D RD1_3806 flhA; glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D RD1_0633 ald; aldehyde dehydrogenase family protein, putative K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RD1_0660 ald; aldehyde dehydrogenase family protein, putative K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RD1_2332 acsA; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RD1_1117 acsA; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RD1_3109 galM; aldose 1-epimerase, putative K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D RD1_2870 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D RD1_1376 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
C 00020 Citrate cycle (TCA cycle) [PATH:rde00020]
D RD1_3219 gltA; citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D RD1_2555 acnA; aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D RD1_2204 icd; isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D RD1_2704 icd; isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D RD1_1609 sucA; alpha-ketoglutarate dehydrogenase K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D RD1_1608 sucB; dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D RD1_1603 lpdA; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RD1_2995 lpdA; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RD1_3670 pyridine nucleotide-disulfide oxidoreductase, putative K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RD1_1611 sucD; succinyl-CoA synthase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D RD1_1615 sucC; succinyl-CoA synthase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D RD1_4245 mtkA; malate-CoA ligase, beta subunit, putative K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D RD1_1628 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D RD1_1630 sdhB; succinate dehydrogenase, iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D RD1_1626 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D RD1_1627 sdhD; suc K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D RD1_2273 fumC; fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D RD1_1617 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RD1_3376 pyc; pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1]
D RD1_1376 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D RD1_3011 pdhA; pyruvate dehydrogenase complex, E1 component, alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D RD1_3013 pdhB; pyruvate dehydrogenase complex, E1 component, beta subunit K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D RD1_3014 pdhC; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00030 Pentose phosphate pathway [PATH:rde00030]
D RD1_2720 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RD1_2722 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D RD1_2721 pgl; 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31]
D RD1_1105 rpe; ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D RD1_2982 tktA; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D RD1_2080 tal; transaldolase, putative K00616 TALDO1; transaldolase [EC:2.2.1.2]
D RD1_1918 rpiA; ribose 5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D RD1_0661 deoC; deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D RD1_0420 rbsK; ribokinase, putative K00852 rbsK; ribokinase [EC:2.7.1.15]
D RD1_3737 rbsK; ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D RD1_3764 rbsK; ribokinase, putative K00852 rbsK; ribokinase [EC:2.7.1.15]
D RD1_3978 deoB; phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D RD1_2870 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D RD1_2388 phnN; phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN K05774 phnN; ribose 1,5-bisphosphokinase [EC:2.7.4.23]
D RD1_3528 ribose-phosphate pyrophosphokinase putative K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D RD1_2879 edd; phosphogluconate dehydratase K01690 edd; phosphogluconate dehydratase [EC:4.2.1.12]
D RD1_2878 eda; KHG/KDPG aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D RD1_3716 gnl; gluconolactonase, putative K01053 gnl; gluconolactonase [EC:3.1.1.17]
D RD1_0868 gnl; gluconolactonase, putative K01053 gnl; gluconolactonase [EC:3.1.1.17]
D RD1_0669 kdgK; 2-dehydro-3-deoxygluconokinase K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
D RD1_4241 hydroxypyruvate reductase, putative K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D RD1_1981 ttuD; hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D RD1_2270 fda; fructose-bisphosphate aldolase, class I K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D RD1_0218 fba; fructose-bisphosphate aldolase, putative K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RD1_2537 glpX; fructose-1,6-bisphosphatase, class II K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37]
C 00040 Pentose and glucuronate interconversions [PATH:rde00040]
D RD1_3995 kdgF; pectin degradation protein K26933 kdgF; unsaturated pyranuronate lyase [EC:4.2.99.25]
D RD1_2934 uxaC; uronate isomerase, putative K01812 uxaC; glucuronate isomerase [EC:5.3.1.12]
D RD1_0665 uxuA; mannonate dehydratase K01686 uxuA; mannonate dehydratase [EC:4.2.1.8]
D RD1_2933 uxuB; D-mannonate oxidoreductase, putative K00040 uxuB; fructuronate reductase [EC:1.1.1.57]
D RD1_B0057 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D RD1_0374 gtaB; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D RD1_1105 rpe; ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D RD1_3704 xylB; xylulose kinase K00854 xylB; xylulokinase [EC:2.7.1.17]
D RD1_3760 xylB; xylulose kinase, putative K00854 xylB; xylulokinase [EC:2.7.1.17]
D RD1_3765 xylA; xylose isomerase, putative K01805 xylA; xylose isomerase [EC:5.3.1.5]
D RD1_3705 xylA; xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D RD1_3084 conserved hypothetical protein K01820 rhaA; L-rhamnose isomerase / sugar isomerase [EC:5.3.1.14 5.3.1.-]
D RD1_2916 conserved hypothetical protein K09988 lyxA; D-lyxose ketol-isomerase [EC:5.3.1.15]
D RD1_3623 xdh; D-xylulose reductase, putative K05351 E1.1.1.9; D-xylulose reductase [EC:1.1.1.9]
D RD1_0686 dihydroxy-acid dehydratase, putative K22186 xylD; xylonate dehydratase [EC:4.2.1.82]
D RD1_0840 cpnE; 5-oxovalerate dehydrogenase, putative K22187 xylA; alpha-ketoglutaric semialdehyde dehydrogenase [EC:1.2.1.-]
D RD1_3629 xylB; xylulose kinase, putative K22935 XK1; D-ribulokinase [EC:2.7.1.47]
D RD1_3632 fucA; L-fuculose phosphate aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
C 00051 Fructose and mannose metabolism [PATH:rde00051]
D RD1_2877 frk; fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D RD1_B0036 xanB; mannose-1-phosphate guanylyltransferase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D RD1_B0016 noeK; phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D RD1_3632 fucA; L-fuculose phosphate aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
D RD1_0506 oxidoreductase, putative K00064 E1.1.1.122; D-threo-aldose 1-dehydrogenase [EC:1.1.1.122]
D RD1_3762 oxidoreductase, putative K00064 E1.1.1.122; D-threo-aldose 1-dehydrogenase [EC:1.1.1.122]
D RD1_3763 conserved hypothetical protein K07046 E3.1.1.120; L-fucono-1,5-lactonase [EC:3.1.1.120]
D RD1_0685 oxidoreductase, putative K18335 E1.1.1.434; 2-dehydro-3-deoxy-L-fuconate 4-dehydrogenase [EC:1.1.1.434]
D RD1_3872 oxidoreductase, putative K21883 lra5; 2-dehydro-3-deoxy-L-rhamnonate dehydrogenase (NAD+) [EC:1.1.1.401]
D RD1_3084 conserved hypothetical protein K01820 rhaA; L-rhamnose isomerase / sugar isomerase [EC:5.3.1.14 5.3.1.-]
D RD1_3713 mpgP; mannosyl-3-phosphoglycerate phosphatase, putative K07026 E3.1.3.70; mannosyl-3-phosphoglycerate phosphatase [EC:3.1.3.70]
D RD1_2537 glpX; fructose-1,6-bisphosphatase, class II K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37]
D RD1_3765 xylA; xylose isomerase, putative K01805 xylA; xylose isomerase [EC:5.3.1.5]
D RD1_3705 xylA; xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D RD1_1481 mtlK; mannitol 2-dehydrogenase K00045 E1.1.1.67; mannitol 2-dehydrogenase [EC:1.1.1.67]
D RD1_2270 fda; fructose-bisphosphate aldolase, class I K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D RD1_0218 fba; fructose-bisphosphate aldolase, putative K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RD1_2961 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D RD1_1382 PTS system IIA component, putative K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
C 00052 Galactose metabolism [PATH:rde00052]
D RD1_3109 galM; aldose 1-epimerase, putative K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D RD1_4203 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RD1_B0040 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RD1_0374 gtaB; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D RD1_2870 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D RD1_3776 glk; glucokinase, putative K00845 glk; glucokinase [EC:2.7.1.2]
D RD1_2869 bgaT; beta-galactosidase K12308 bgaB; beta-galactosidase [EC:3.2.1.23]
D RD1_2865 rafA; alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D RD1_2866 oxidoreductase, putative K22215 galD; galactose dehydrogenase [EC:1.1.1.48 1.1.1.120]
D RD1_3939 racemase, putative K01684 dgoD; galactonate dehydratase [EC:4.2.1.6]
D RD1_2867 dgoK; 2-dehydro-3-deoxygalactonokinase, putative K00883 dgoK; 2-dehydro-3-deoxygalactonokinase [EC:2.7.1.58]
D RD1_2868 dgoA; 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, putative K01631 dgoA; 2-dehydro-3-deoxyphosphogalactonate aldolase [EC:4.1.2.21]
D RD1_2326 aglA; alpha-glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
C 00053 Ascorbate and aldarate metabolism [PATH:rde00053]
D RD1_B0057 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D RD1_3716 gnl; gluconolactonase, putative K01053 gnl; gluconolactonase [EC:3.1.1.17]
D RD1_0868 gnl; gluconolactonase, putative K01053 gnl; gluconolactonase [EC:3.1.1.17]
D RD1_0506 oxidoreductase, putative K00064 E1.1.1.122; D-threo-aldose 1-dehydrogenase [EC:1.1.1.122]
D RD1_3762 oxidoreductase, putative K00064 E1.1.1.122; D-threo-aldose 1-dehydrogenase [EC:1.1.1.122]
D RD1_B0043 UDP-glucuronate 5'-epimerase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D RD1_0633 ald; aldehyde dehydrogenase family protein, putative K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RD1_0660 ald; aldehyde dehydrogenase family protein, putative K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RD1_2062 conserved hypothetical protein K18981 udh; uronate dehydrogenase [EC:1.1.1.203]
D RD1_0679 racemase, putative K18983 gci; D-galactarolactone cycloisomerase [EC:5.5.1.27]
C 00500 Starch and sucrose metabolism [PATH:rde00500]
D RD1_2326 aglA; alpha-glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D RD1_3715 gtfA; sucrose phosphorylase, putative K00690 E2.4.1.7; sucrose phosphorylase [EC:2.4.1.7]
D RD1_0374 gtaB; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D RD1_2318 bglA; beta-glucosidase A K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D RD1_2874 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D RD1_2873 glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21]
D RD1_2875 glgB; 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D RD1_2876 glgP; glycogen phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D RD1_2871 malQ; 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D RD1_2872 glgX; glycogen debranching enzyme K01214 ISA; isoamylase [EC:3.2.1.68]
D RD1_2870 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D RD1_3776 glk; glucokinase, putative K00845 glk; glucokinase [EC:2.7.1.2]
D RD1_2720 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RD1_2877 frk; fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:rde00520]
D RD1_3163 nagZ; beta-hexosaminidase, putative K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D RD1_1725 nagA; N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D RD1_1728 putative N-acetylglucosamine kinase K18676 gspK; glucosamine kinase [EC:2.7.1.8]
D RD1_2877 frk; fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D RD1_3305 glmS; glucosamine--fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D RD1_1726 SIS domain protein K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D RD1_2418 glucosamine--fructose-6-phosphate aminotransferase, putative K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D RD1_1952 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D RD1_3304 glmU; UDP-N-acetylglucosamine pyrophosphorylase, putative K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D RD1_3145 conserved hypothetical protein K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
D RD1_0455 conserved hypothetical protein K07102 amgK; N-acetylmuramate 1-kinase [EC:2.7.1.221]
D RD1_0454 nucleotidyltransferase family protein, putative K00992 murU; N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase [EC:2.7.7.99]
D RD1_1065 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D RD1_3352 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D RD1_1493 UDP-glucose/GDP-mannose dehydrogenase, putative K13015 wbpA; UDP-N-acetyl-D-glucosamine dehydrogenase [EC:1.1.1.136]
D RD1_3776 glk; glucokinase, putative K00845 glk; glucokinase [EC:2.7.1.2]
D RD1_2870 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D RD1_0374 gtaB; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D RD1_B0057 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D RD1_4203 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RD1_B0040 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RD1_B0043 UDP-glucuronate 5'-epimerase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D RD1_1382 PTS system IIA component, putative K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D RD1_2720 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RD1_B0016 noeK; phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D RD1_B0036 xanB; mannose-1-phosphate guanylyltransferase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D RD1_2874 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
C 00620 Pyruvate metabolism [PATH:rde00620]
D RD1_2332 acsA; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RD1_1117 acsA; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RD1_3011 pdhA; pyruvate dehydrogenase complex, E1 component, alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D RD1_3013 pdhB; pyruvate dehydrogenase complex, E1 component, beta subunit K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D RD1_3014 pdhC; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D RD1_1603 lpdA; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RD1_2995 lpdA; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RD1_3670 pyridine nucleotide-disulfide oxidoreductase, putative K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RD1_0887 flhA; glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D RD1_3806 flhA; glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D RD1_3831 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D RD1_0821 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D RD1_1007 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D RD1_0998 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D RD1_2850 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein, putative K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D RD1_2851 accC; acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D RD1_0328 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D RD1_0633 ald; aldehyde dehydrogenase family protein, putative K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RD1_0660 ald; aldehyde dehydrogenase family protein, putative K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RD1_0510 pct; propionate CoA-transferase K01026 pct; propionate CoA-transferase [EC:2.8.3.1]
D RD1_3896 putative L-lactate dehydrogenase K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3]
D RD1_3375 lldD; L-lactate dehydrogenase, putative K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3]
D RD1_0074 dld; D-lactate dehydrogenase K03777 dld; D-lactate dehydrogenase (quinone) [EC:1.1.5.12]
D RD1_3435 oxidoreductase, putative K00102 LDHD; D-lactate dehydrogenase (cytochrome) [EC:1.1.2.4]
D RD1_1872 gloA; lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D RD1_2192 glo; lactoylglutathione lyase, putative K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D RD1_3539 gloB; hydroxyacylglutathione hydrolase, putative K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D RD1_1204 2-hydroxyacid dehydrogenase, putative K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]
D RD1_0421 tme; NADP-dependent malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D RD1_3376 pyc; pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1]
D RD1_1617 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RD1_2273 fumC; fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D RD1_4248 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D RD1_1376 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D RD1_1948 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D RD1_3325 glcB; malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9]
D RD1_0201 bktB; beta-ketothiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RD1_3394 phbA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RD1_0025 thiolase, N-terminal domain K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RD1_3972 fadA; fatty acid oxidation complex beta subunit K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RD1_1211 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D RD1_3182 2-isopropylmalate synthase/homocitrate synthase family protein K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:rde00630]
D RD1_2332 acsA; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RD1_1117 acsA; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RD1_3325 glcB; malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9]
D RD1_1617 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RD1_3219 gltA; citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D RD1_2555 acnA; aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D RD1_4246 mtkB; malate-CoA ligase, alpha subunit, putative K08692 mtkB; malate-CoA ligase subunit alpha [EC:6.2.1.9]
D RD1_1163 mtkB; Malate-CoA ligase, alpha subunit, putative K08692 mtkB; malate-CoA ligase subunit alpha [EC:6.2.1.9]
D RD1_1162 mtkA; malate-CoA ligase, beta subunit, putative K14067 mtkA; malate-CoA ligase subunit beta [EC:6.2.1.9]
D RD1_0201 bktB; beta-ketothiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RD1_3394 phbA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RD1_0025 thiolase, N-terminal domain K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RD1_3972 fadA; fatty acid oxidation complex beta subunit K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RD1_3395 phbB; acetoacetyl-CoA reductase, putative K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D RD1_3522 MaoC-like protein, putative K17865 croR; 3-hydroxybutyryl-CoA dehydratase [EC:4.2.1.55]
D RD1_0507 MaoC-like protein, putative K17865 croR; 3-hydroxybutyryl-CoA dehydratase [EC:4.2.1.55]
D RD1_1637 ccrA; crotonyl-CoA reductase, putative K14446 ccr; crotonyl-CoA carboxylase/reductase [EC:1.3.1.85]
D RD1_1179 conserved hypothetical protein K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D RD1_1635 mutB; methylmalonyl-CoA mutase K14447 ecm; ethylmalonyl-CoA mutase [EC:5.4.99.63]
D RD1_1372 ibd2; isobutyryl-CoA dehydrogenase K14448 mcd; (2S)-methylsuccinyl-CoA dehydrogenase [EC:1.3.8.12]
D RD1_1623 MaoC family protein K14449 mch; 2-methylfumaryl-CoA hydratase [EC:4.2.1.148]
D RD1_4242 mclA; malyl-CoA lyase K08691 mcl; malyl-CoA/(S)-citramalyl-CoA lyase [EC:4.1.3.24 4.1.3.25]
D RD1_1160 mclA; malyl-CoA lyase K08691 mcl; malyl-CoA/(S)-citramalyl-CoA lyase [EC:4.1.3.24 4.1.3.25]
D RD1_1001 citE; citrate lyase, beta subunit, putative K08691 mcl; malyl-CoA/(S)-citramalyl-CoA lyase [EC:4.1.3.24 4.1.3.25]
D RD1_1620 citE; citrate lyase, beta subunit, putative K14451 mcl2; (3S)-malyl-CoA thioesterase [EC:3.1.2.30]
D RD1_2032 pccA; propionyl-CoA carboxylase, alpha subunit K01965 PCCA; propionyl-CoA carboxylase alpha subunit [EC:6.4.1.3]
D RD1_2028 pccB; propionyl-CoA carboxylase, beta subunit K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15]
D RD1_2035 mutA; methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D RD1_0625 glcD; glycolate oxidase, subunit GlcD K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14]
D RD1_0626 glcE; glycolate oxidase, subunit GlcE K11472 glcE; glycolate dehydrogenase FAD-binding subunit [EC:1.1.99.14]
D RD1_0627 glcF; glycolate oxidase, iron-sulfur subunit K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14]
D RD1_3437 gyaR; glyoxylate reductase K00015 gyaR; glyoxylate reductase [EC:1.1.1.26]
D RD1_1204 2-hydroxyacid dehydrogenase, putative K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]
D RD1_1442 hydrolase, putative K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D RD1_2529 haloacid dehalogenase-like hydrolase, putative K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D RD1_3303 gph; phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D RD1_3476 gph; phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D RD1_1750 sgaA; serine--glyoxylate aminotransferase, putative K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D RD1_2892 sgaA; serine--glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D RD1_1497 glutamine synthetase, putative K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RD1_1894 glutamine synthetase, putative K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RD1_1892 glutamine synthetase, putative K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RD1_2173 ipuC; gamma-glutamylisopropylamide synthetase, putative K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RD1_2569 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RD1_3991 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RD1_4249 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RD1_1165 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RD1_1225 gcvP; glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D RD1_0003 aminomethyltransferase, putative K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D RD1_1222 gcvT; aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D RD1_3858 glycine cleavage T-protein (aminomethyl transferase) family protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D RD1_1603 lpdA; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RD1_2995 lpdA; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RD1_3670 pyridine nucleotide-disulfide oxidoreductase, putative K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RD1_1223 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D RD1_4241 hydroxypyruvate reductase, putative K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D RD1_1981 ttuD; hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D RD1_2878 eda; KHG/KDPG aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D RD1_4234 fdhA; formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D RD1_2897 fdhA; formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D RD1_4233 fdhB; formate dehydrogenase, beta subunit K22515 fdwB; formate dehydrogenase beta subunit [EC:1.17.1.9]
D RD1_2896 fdhB; formate dehydrogenase Fe-S subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D RD1_2895 fdhI; formate dehydrogenase, gamma subunit, putative K00127 fdoI; formate dehydrogenase subunit gamma
D RD1_3602 fmdA; amidase K01455 E3.5.1.49; formamidase [EC:3.5.1.49]
D RD1_3679 hutG; N-formylglutamate amidohydrolase, putative K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68]
D RD1_2061 n-formylglutamate amidohydrolase, putative K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68]
C 00640 Propanoate metabolism [PATH:rde00640]
D RD1_2332 acsA; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RD1_1117 acsA; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RD1_3986 prpE; propionate--CoA ligase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17]
D RD1_0510 pct; propionate CoA-transferase K01026 pct; propionate CoA-transferase [EC:2.8.3.1]
D RD1_3831 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D RD1_0821 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D RD1_2926 pdhB; pyruvate dehydrogenase E1 component, beta subunit, putative K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4]
D RD1_1603 lpdA; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RD1_2995 lpdA; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RD1_3670 pyridine nucleotide-disulfide oxidoreductase, putative K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RD1_2290 oxidoreductase, putative K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-]
D RD1_3973 fadJ; fatty acid oxidation complex alpha subunit, putative K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D RD1_0998 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D RD1_2850 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein, putative K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D RD1_2851 accC; acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D RD1_0328 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D RD1_1475 mcd; malonyl-CoA decarboxylase K01578 MLYCD; malonyl-CoA decarboxylase [EC:4.1.1.9]
D RD1_0839 gabT; 4-aminobutyrate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D RD1_2032 pccA; propionyl-CoA carboxylase, alpha subunit K01965 PCCA; propionyl-CoA carboxylase alpha subunit [EC:6.4.1.3]
D RD1_2028 pccB; propionyl-CoA carboxylase, beta subunit K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15]
D RD1_1179 conserved hypothetical protein K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D RD1_2035 mutA; methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D RD1_1615 sucC; succinyl-CoA synthase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D RD1_4245 mtkA; malate-CoA ligase, beta subunit, putative K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D RD1_1611 sucD; succinyl-CoA synthase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D RD1_2990 mmsA; methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
C 00650 Butanoate metabolism [PATH:rde00650]
D RD1_0201 bktB; beta-ketothiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RD1_3394 phbA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RD1_0025 thiolase, N-terminal domain K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RD1_3972 fadA; fatty acid oxidation complex beta subunit K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RD1_1385 bhbD; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D RD1_3973 fadJ; fatty acid oxidation complex alpha subunit, putative K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D RD1_0205 enoyl-CoA hydratase/isomerase family protein K01715 crt; enoyl-CoA hydratase [EC:4.2.1.17]
D RD1_0509 putative enoyl-CoA hydratase/isomerase family protein K01715 crt; enoyl-CoA hydratase [EC:4.2.1.17]
D RD1_0841 buk; butyrate kinase K00929 buk; butyrate kinase [EC:2.7.2.7]
D RD1_3522 MaoC-like protein, putative K17865 croR; 3-hydroxybutyryl-CoA dehydratase [EC:4.2.1.55]
D RD1_0507 MaoC-like protein, putative K17865 croR; 3-hydroxybutyryl-CoA dehydratase [EC:4.2.1.55]
D RD1_1888 phaC; poly(3-hydroxyalkanoate) polymerase, putative K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304]
D RD1_1887 phaZ; polyhydroxyalkanoate depolymerase, intracellular, putative K05973 phaZ; poly(3-hydroxybutyrate) depolymerase [EC:3.1.1.75]
D RD1_3395 phbB; acetoacetyl-CoA reductase, putative K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D RD1_3471 Asp/Glu/Hydantoin racemase family protein, putative K01799 nicE; maleate isomerase [EC:5.2.1.1]
D RD1_1628 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D RD1_1630 sdhB; succinate dehydrogenase, iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D RD1_1626 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D RD1_1627 sdhD; suc K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D RD1_0839 gabT; 4-aminobutyrate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D RD1_2337 aminotransferase K16871 POP2; 4-aminobutyrate---pyruvate transaminase [EC:2.6.1.96]
D RD1_0927 gabD; succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D RD1_3295 mvaB; hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D RD1_2130 dxnG; 3-oxoadipate CoA-succinyl transferase, alpha subunit K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D RD1_2128 dxnH; 3-oxoadipate CoA-succinyl transferase, beta subunit K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
D RD1_2738 bdhA; D-beta-hydroxybutyrate dehydrogenase K00019 BDH1; 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30]
D RD1_2812 ilvB; acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D RD1_1674 alsS; acetolactate synthase, putative K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D RD1_2449 ilvB; acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D RD1_2813 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:rde00660]
D RD1_2812 ilvB; acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D RD1_1674 alsS; acetolactate synthase, putative K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D RD1_2449 ilvB; acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D RD1_2813 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D RD1_1615 sucC; succinyl-CoA synthase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D RD1_4245 mtkA; malate-CoA ligase, beta subunit, putative K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D RD1_1611 sucD; succinyl-CoA synthase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D RD1_4242 mclA; malyl-CoA lyase K08691 mcl; malyl-CoA/(S)-citramalyl-CoA lyase [EC:4.1.3.24 4.1.3.25]
D RD1_1160 mclA; malyl-CoA lyase K08691 mcl; malyl-CoA/(S)-citramalyl-CoA lyase [EC:4.1.3.24 4.1.3.25]
D RD1_1001 citE; citrate lyase, beta subunit, putative K08691 mcl; malyl-CoA/(S)-citramalyl-CoA lyase [EC:4.1.3.24 4.1.3.25]
D RD1_1623 MaoC family protein K14449 mch; 2-methylfumaryl-CoA hydratase [EC:4.2.1.148]
D RD1_0616 leuC; 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D RD1_0226 leuD; 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D RD1_0228 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D RD1_3789 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:rde00562]
D RD1_2507 suhB; inositol-1-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D RD1_0291 inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D RD1_2209 myo-inositol-1-monophosphotase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D RD1_0217 idhA; myo-inositol dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D RD1_2308 oxidoreductase, putative K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D RD1_0223 conserved hypothetical protein K03335 iolE; inosose dehydratase [EC:4.2.1.44]
D RD1_0221 iolD; acetolactate synthase K03336 iolD; 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) [EC:3.7.1.22]
D RD1_0484 iolB; myo-inositol catabolism protein IolB, putative K03337 iolB; 5-deoxy-glucuronate isomerase [EC:5.3.1.30]
D RD1_0219 conserved hypothetical protein K03337 iolB; 5-deoxy-glucuronate isomerase [EC:5.3.1.30]
D RD1_0220 pfkB family kinase, putative K03338 iolC; 5-dehydro-2-deoxygluconokinase [EC:2.7.1.92]
D RD1_2990 mmsA; methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D RD1_2961 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:rde00190]
D RD1_3292 nuoA; NADH-quinone oxidoreductase chain A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D RD1_3291 nuoB; NADH-quinone oxidoreductase chain B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D RD1_3290 nuoC; NADH-quinone oxidoreductase chain C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2]
D RD1_3287 nuoD; NADH-quinone oxidoreductase chain D K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2]
D RD1_3285 nuoE; NADH-quinone oxidoreductase chain E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D RD1_3282 nuoF; NADH-quinone oxidoreductase chain F K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D RD1_3278 nuoG; NADH-quinone oxidoreductase chain G K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D RD1_3276 nuoH; NADH-quinone oxidoreductase chain H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D RD1_3275 nuoI; NADH-quinone oxidoreductase chain I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D RD1_3273 nuoJ; NADH-quinone oxidoreductase chain J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D RD1_3271 nuoK; NADH-quinone oxidoreductase chain K K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D RD1_3270 nuoL; NADH-quinone oxidoreductase chain L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D RD1_3269 nuoM; NADH-quinone oxidoreductase chain M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D RD1_3268 nuoN; NADH-quinone oxidoreductase chain N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D RD1_2501 pyridine nucleotide-disulphide oxidoreductase family protein K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D RD1_1628 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D RD1_1630 sdhB; succinate dehydrogenase, iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D RD1_1626 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D RD1_1627 sdhD; suc K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D RD1_0563 petA; ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D RD1_0564 petB; cytochrome b K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D RD1_0565 petC; cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D RD1_2136 ctaB; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D RD1_2139 ctaE; cytochrome c oxidase subunit III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9]
D RD1_1967 ctaD; cytochrome c oxidase, subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9]
D RD1_2135 ctaC; cytochrome c oxidase, subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]
D RD1_2138 ctaG; cytochrome c oxidase assembly protein CtaG K02258 COX11; cytochrome c oxidase assembly protein subunit 11
D RD1_2728 cytochrome c oxidase assembly protein, putative K02259 COX15; heme a synthase [EC:1.17.99.9]
D RD1_1270 ccoN; cytochrome c oxidase, cbb3-type, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D RD1_1271 ccoO; cytochrome c oxidase, cbb3-type, subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D RD1_1272 ccoQ; cytochrome c oxidase, cbb3-type, subunit IV K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV
D RD1_1273 ccoP; cytochrome c oxidase, cbb3-type, subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D RD1_0793 cydA; cytochrome oxidase subunit II, putative K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D RD1_0794 cydB; cytochrome oxidase, subunit II, putative K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D RD1_0126 cycA; cytochrome c-551 K08738 CYC; cytochrome c
D RD1_1563 cycA; cytochrome c2 K08738 CYC; cytochrome c
D RD1_1262 cycM; cytochrome c552 K08738 CYC; cytochrome c
D RD1_0889 cytochrome c family protein K08738 CYC; cytochrome c
D RD1_1518 soxE; cytochrome c2 K08738 CYC; cytochrome c
D RD1_0991 WD repeat protein K08738 CYC; cytochrome c
D RD1_3535 atpA; ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D RD1_3533 atpD; ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D RD1_3534 atpG; ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D RD1_3536 atpH; ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D RD1_3532 atpC; ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D RD1_1322 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D RD1_1325 atpF; ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D RD1_1324 atpX; ATP synthase F0, B' subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D RD1_1323 atpE; ATP synthase F0, C subunit-related protein K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D RD1_3520 ppaC; inorganic pyrophosphatase, manganese-dependent K15986 ppaC; manganese-dependent inorganic pyrophosphatase [EC:3.6.1.1]
D RD1_2042 ppk; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D RD1_2786 Polyphosphate kinase 2 domain, putative K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D RD1_0979 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms [PATH:rde00710]
D RD1_3008 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D RD1_2880 gap; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D RD1_2984 gap; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D RD1_2270 fda; fructose-bisphosphate aldolase, class I K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D RD1_0218 fba; fructose-bisphosphate aldolase, putative K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RD1_2537 glpX; fructose-1,6-bisphosphatase, class II K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37]
D RD1_2982 tktA; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D RD1_1918 rpiA; ribose 5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D RD1_2961 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D RD1_1105 rpe; ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D RD1_4248 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D RD1_1376 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D RD1_1948 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D RD1_0421 tme; NADP-dependent malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D RD1_1617 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
C 00720 Carbon fixation pathways in prokaryotes
C 00680 Methane metabolism [PATH:rde00680]
D RD1_0890 moxF; methanol dehydrogenase, large subunit K23995 xoxF; lanthanide-dependent methanol dehydrogenase [EC:1.1.2.10]
D RD1_0887 flhA; glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D RD1_3806 flhA; glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D RD1_0888 S-formylglutathione hydrolase, putative K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12]
D RD1_0320 fghA; S-formylglutathione hydrolase, putative K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12]
D RD1_4234 fdhA; formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D RD1_2897 fdhA; formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D RD1_4233 fdhB; formate dehydrogenase, beta subunit K22515 fdwB; formate dehydrogenase beta subunit [EC:1.17.1.9]
D RD1_2896 fdhB; formate dehydrogenase Fe-S subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D RD1_2895 fdhI; formate dehydrogenase, gamma subunit, putative K00127 fdoI; formate dehydrogenase subunit gamma
D RD1_3991 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RD1_4249 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RD1_1165 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RD1_1750 sgaA; serine--glyoxylate aminotransferase, putative K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D RD1_2892 sgaA; serine--glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D RD1_4241 hydroxypyruvate reductase, putative K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D RD1_1981 ttuD; hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D RD1_3142 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D RD1_4248 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D RD1_1617 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RD1_4246 mtkB; malate-CoA ligase, alpha subunit, putative K08692 mtkB; malate-CoA ligase subunit alpha [EC:6.2.1.9]
D RD1_1163 mtkB; Malate-CoA ligase, alpha subunit, putative K08692 mtkB; malate-CoA ligase subunit alpha [EC:6.2.1.9]
D RD1_1162 mtkA; malate-CoA ligase, beta subunit, putative K14067 mtkA; malate-CoA ligase subunit beta [EC:6.2.1.9]
D RD1_4242 mclA; malyl-CoA lyase K08691 mcl; malyl-CoA/(S)-citramalyl-CoA lyase [EC:4.1.3.24 4.1.3.25]
D RD1_1160 mclA; malyl-CoA lyase K08691 mcl; malyl-CoA/(S)-citramalyl-CoA lyase [EC:4.1.3.24 4.1.3.25]
D RD1_1001 citE; citrate lyase, beta subunit, putative K08691 mcl; malyl-CoA/(S)-citramalyl-CoA lyase [EC:4.1.3.24 4.1.3.25]
D RD1_2270 fda; fructose-bisphosphate aldolase, class I K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D RD1_0218 fba; fructose-bisphosphate aldolase, putative K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RD1_2537 glpX; fructose-1,6-bisphosphatase, class II K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37]
D RD1_4141 tmd; trimethylamine dehydrogenase K00317 dmd-tmd; dimethylamine/trimethylamine dehydrogenase [EC:1.5.8.1 1.5.8.2]
D RD1_0632 flavin-containing monooxygenase K18277 tmm; trimethylamine monooxygenase [EC:1.14.13.148]
D RD1_3664 dmsA; dimethyl sulfoxide reductase K07812 torZ; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D RD1_4253 glutamine amidotransferase, class II putative K22081 mgsA; methylamine---glutamate N-methyltransferase subunit A [EC:2.1.1.21]
D RD1_4252 FwdC/FmdC family protein K22082 mgsB; methylamine---glutamate N-methyltransferase subunit B [EC:2.1.1.21]
D RD1_4251 glutamate synthase family protein, putative K22083 mgsC; methylamine---glutamate N-methyltransferase subunit C [EC:2.1.1.21]
D RD1_0012 soxB; sarcosine oxidase, beta subunit K22084 mgdA; methylglutamate dehydrogenase subunit A [EC:1.5.99.5]
D RD1_1788 soxB; sarcosine oxidase, beta subunit K22084 mgdA; methylglutamate dehydrogenase subunit A [EC:1.5.99.5]
D RD1_0011 soxD; sarcosine oxidase, delta subunit K22085 mgdB; methylglutamate dehydrogenase subunit B [EC:1.5.99.5]
D RD1_1789 soxD; sarcosine oxidase, delta subunit K22085 mgdB; methylglutamate dehydrogenase subunit B [EC:1.5.99.5]
D RD1_0010 soxA; sarcosine oxidase, alpha subunit K22086 mgdC; methylglutamate dehydrogenase subunit C [EC:1.5.99.5]
D RD1_1790 soxA; sarcosine oxidase, alpha subunit K22086 mgdC; methylglutamate dehydrogenase subunit C [EC:1.5.99.5]
D RD1_0009 soxG; sarcosine oxidase, gamma subunit K22087 mgdD; methylglutamate dehydrogenase subunit D [EC:1.5.99.5]
D RD1_1791 soxG; sarcosine oxidase, gamma subunit, putative K22087 mgdD; methylglutamate dehydrogenase subunit D [EC:1.5.99.5]
D RD1_3988 coenzyme F420 hydrogenase, beta subunit, putative K00441 frhB; coenzyme F420 hydrogenase subunit beta [EC:1.12.98.1]
D RD1_3831 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D RD1_0821 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D RD1_2332 acsA; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RD1_1117 acsA; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RD1_0335 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D RD1_0197 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D RD1_3633 serA; D-3-phosphoglycerate dehydrogenase, putative K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D RD1_0196 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D RD1_0195 serB; phosphoserine phosphatase, putative K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D RD1_1344 trimethylamine methyltransferase, putative K14083 mttB; trimethylamine---corrinoid protein Co-methyltransferase [EC:2.1.1.250]
D RD1_3188 trimethylamine methyltransferase family protein K14083 mttB; trimethylamine---corrinoid protein Co-methyltransferase [EC:2.1.1.250]
D RD1_2777 trimethylamine methyltransferase family protein K14083 mttB; trimethylamine---corrinoid protein Co-methyltransferase [EC:2.1.1.250]
D RD1_2530 trimethylamine methyltransferase family protein K14083 mttB; trimethylamine---corrinoid protein Co-methyltransferase [EC:2.1.1.250]
D RD1_3812 decarboxylase, putative K06034 comD; sulfopyruvate decarboxylase subunit alpha [EC:4.1.1.79]
D RD1_3813 bcpC; 3-phosphonopyruvate decarboxylase, putative K13039 comE; sulfopyruvate decarboxylase subunit beta [EC:4.1.1.79]
C 00910 Nitrogen metabolism [PATH:rde00910]
D RD1_3602 fmdA; amidase K01455 E3.5.1.49; formamidase [EC:3.5.1.49]
D RD1_2440 napA; nitrate permease K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D RD1_2441 narK; nitrite extrusion protein K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D RD1_4172 nasF; nitrate transporter substrate-binding K15576 nrtA; nitrate/nitrite transport system substrate-binding protein
D RD1_4170 nasE; nitrate ABC transporter, permease component K15577 nrtB; nitrate/nitrite transport system permease protein
D RD1_4169 nasD; nitrate ABC transporter protein, ATP binding component K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4]
D RD1_2442 narG; nitrate reductase, alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D RD1_2443 narH; nitrate reductase, beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D RD1_2445 narI; nitrate reductase, gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-]
D RD1_4166 nasA; nitrate reductase K00372 nasC; assimilatory nitrate reductase catalytic subunit [EC:1.7.99.-]
D RD1_4168 nirB; assimilatory nitrite reductase, large subunit K26139 nasD; nitrite reductase [NAD(P)H] large subunit [EC:1.7.1.4]
D RD1_4167 nirD; assimilatory nitrite reductase, small subunit K26138 nasE; nitrite reductase [NAD(P)H] small subunit [EC:1.7.1.4]
D RD1_1565 nirS; nitrite reductase K15864 nirS; nitrite reductase (NO-forming) / hydroxylamine reductase [EC:1.7.2.1 1.7.99.1]
D RD1_1561 norB; nitric-oxide reductase subunit B K04561 norB; nitric oxide reductase subunit B [EC:1.7.2.5]
D RD1_1562 norC; NorC-like protein K02305 norC; nitric oxide reductase subunit C
D RD1_1547 nosZ; nitrous-oxide reductase K00376 nosZ; nitrous-oxide reductase [EC:1.7.2.4]
D RD1_1787 gill; glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]
D RD1_2450 gdhA; glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D RD1_1497 glutamine synthetase, putative K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RD1_1894 glutamine synthetase, putative K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RD1_1892 glutamine synthetase, putative K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RD1_2173 ipuC; gamma-glutamylisopropylamide synthetase, putative K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RD1_2569 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RD1_0060 gltB; glutamate synthase, large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D RD1_0063 gltD; glutamate synthase, small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D RD1_0312 cynT; carbonate anhydratase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:rde00920]
D RD1_0982 tauA; taurine ABC transporter, periplasmic binding protein K15551 tauA; taurine transport system substrate-binding protein
D RD1_0984 tauC; taurine ABC transporter, permease protein K15552 tauC; taurine transport system permease protein
D RD1_0983 tauB; taurine ABC transporter, ATP-binding protein K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7]
D RD1_B0030 sat; sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D RD1_0376 cysQ; 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D RD1_2967 cysH; phosophoadenylyl-sulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D RD1_0975 phsA; thiosulfate reductase, putative K21307 soeA; sulfite dehydrogenase (quinone) subunit SoeA [EC:1.8.5.6]
D RD1_0974 4Fe-4S binding domain protein K21308 soeB; sulfite dehydrogenase (quinone) subunit SoeB
D RD1_0973 dmsC; anaerobic dimethyl sulfoxide reductase, C subunit, putative K21309 soeC; sulfite dehydrogenase (quinone) subunit SoeC
D RD1_1514 soxA; diheme cytochrome c SoxA K17222 soxA; L-cysteine S-thiosulfotransferase [EC:2.8.5.2]
D RD1_1511 soxX; monoheme cytochrome c SoxX K17223 soxX; L-cysteine S-thiosulfotransferase [EC:2.8.5.2]
D RD1_0884 conserved hypothetical protein K17226 soxY; sulfur-oxidizing protein SoxY
D RD1_1512 soxY; sulfur oxidation Y protein K17226 soxY; sulfur-oxidizing protein SoxY
D RD1_0894 conserved hypothetical protein K17226 soxY; sulfur-oxidizing protein SoxY
D RD1_1513 soxZ; sulfur oxidation Z protein K17227 soxZ; sulfur-oxidizing protein SoxZ
D RD1_1515 soxB; sulfur oxidation B protein K17224 soxB; S-sulfosulfanyl-L-cysteine sulfohydrolase [EC:3.1.6.20]
D RD1_1516 soxC; sulfite dehydrogenase SoxC protein K17225 soxC; sulfane dehydrogenase subunit SoxC
D RD1_1517 soxD; diheme cytochrome c SoxD K22622 soxD; S-disulfanyl-L-cysteine oxidoreductase SoxD [EC:1.8.2.6]
D RD1_2966 cysI; sulfite reductase K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
D RD1_0784 conserved hypothetical protein K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4]
D RD1_1519 soxF; sulfide dehydrogenase [flavocytochrome c] flavoprotein chain K17229 fccB; sulfide dehydrogenase [flavocytochrome c] flavoprotein chain [EC:1.8.2.3]
D RD1_0934 mst; 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D RD1_3015 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D RD1_1129 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D RD1_2941 cysK; O-acetylserine sulfhydrylase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D RD1_2299 cysB; cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D RD1_3674 pyridoxal-phosphate dependent enzyme K01738 cysK; cysteine synthase [EC:2.5.1.47]
D RD1_2784 metA; homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D RD1_1939 metZ; O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
D RD1_2640 mdeA; methionine gamma-lyase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
D RD1_2378 sbp; selenium binding protein K17285 SELENBP1; methanethiol oxidase [EC:1.8.3.4]
D RD1_2288 aminomethyl transferase family protein, putative K17486 dmdA; dimethylsulfoniopropionate demethylase [EC:2.1.1.269]
D RD1_3974 AMP-binding domain protein K20034 dmdB; 3-(methylthio)propionyl---CoA ligase [EC:6.2.1.44]
D RD1_3969 acyl-CoA dehydrogenase family protein K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41]
D RD1_3417 putative acyl-CoA dehydrogenase family protein K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41]
D RD1_0738 conserved hypothetical protein K21310 mddA; methanethiol S-methyltransferase [EC:2.1.1.334]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:rde00061]
D RD1_0998 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D RD1_2850 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein, putative K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D RD1_2851 accC; acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D RD1_0328 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D RD1_2621 acyl carrier protein K02078 acpP; acyl carrier protein
D RD1_3038 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
D RD1_3040 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D RD1_2925 fabD; malonyl CoA-acyl carrier protein transacylase, putative K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D RD1_3156 fabH; 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D RD1_3924 fabB; 3-oxoacyl-(acyl-carrier-protein) synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D RD1_3036 fabF; 3-oxoacyl-(acyl carrier protein) synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D RD1_3039 oxidoreductase, short chain dehydrogenase/reductase family K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RD1_3261 oxidoreductase, putative K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RD1_0098 linX; 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase, putative K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RD1_3996 oxidoreductase, putative K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RD1_3923 fabA; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA, putative K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D RD1_2595 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D RD1_3199 fabI-2; enoyl-(acyl-carrier-protein) reductase, putative K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D RD1_3925 fabI; enoyl-(acyl-carrier-protein) reductase, putative K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D RD1_0546 fadD; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RD1_0702 putative AMP-binding enzyme K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RD1_2849 AMP-binding domain protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:rde00071]
D RD1_0201 bktB; beta-ketothiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RD1_3394 phbA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RD1_0025 thiolase, N-terminal domain K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RD1_3972 fadA; fatty acid oxidation complex beta subunit K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RD1_3973 fadJ; fatty acid oxidation complex alpha subunit, putative K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D RD1_0611 acdA; acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D RD1_2065 acyl-CoA dehydrogenase family protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D RD1_3970 fadE; acyl-CoA dehydrogenase K00255 ACADL; long-chain-acyl-CoA dehydrogenase [EC:1.3.8.8]
D RD1_3956 gcdH; glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D RD1_0546 fadD; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RD1_0702 putative AMP-binding enzyme K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RD1_2849 AMP-binding domain protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RD1_0947 pyridine nucleotide-disulphide oxidoreductase, putative K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3]
D RD1_0887 flhA; glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D RD1_3806 flhA; glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D RD1_0633 ald; aldehyde dehydrogenase family protein, putative K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RD1_0660 ald; aldehyde dehydrogenase family protein, putative K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis [PATH:rde00100]
D RD1_0610 putative sterol desaturase K00227 SC5DL; Delta7-sterol 5-desaturase [EC:1.14.19.20]
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis [PATH:rde00121]
D RD1_1281 oxidoreductase, putative K00076 hdhA; 7-alpha-hydroxysteroid dehydrogenase [EC:1.1.1.159]
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:rde00561]
D RD1_4241 hydroxypyruvate reductase, putative K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D RD1_1981 ttuD; hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D RD1_0633 ald; aldehyde dehydrogenase family protein, putative K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RD1_0660 ald; aldehyde dehydrogenase family protein, putative K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RD1_2883 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D RD1_1636 acyltransferase, putative K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D RD1_3155 plsX; fatty acid/phospholipid synthesis protein PlsX, putative K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D RD1_3430 conserved hypothetical protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D RD1_1601 acyltransferase, putative K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D RD1_2865 rafA; alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
C 00564 Glycerophospholipid metabolism [PATH:rde00564]
D RD1_0469 gpsA; glycerol-3-phosphate dehydrogenase, putative K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D RD1_2884 glpD; glycerol-3-phosphate dehydrogenase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D RD1_1636 acyltransferase, putative K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D RD1_3430 conserved hypothetical protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D RD1_1601 acyltransferase, putative K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D RD1_1819 pldB; lysophospholipase, putative K01048 pldB; lysophospholipase [EC:3.1.1.5]
D RD1_0308 glpQ; glycerophosphoryl diester phosphodiesterase family protein K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D RD1_1698 glycerophosphoryl diester phosphodiesterase family protein, putative K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D RD1_2588 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D RD1_2077 pcs; phosphatidylcholine synthase, putative K01004 pcs; phosphatidylcholine synthase [EC:2.7.8.24]
D RD1_2768 pgpA; phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
D RD1_3832 cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
D RD1_4086 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K08744 CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41]
D RD1_3615 hypothetical protein K00096 araM; glycerol-1-phosphate dehydrogenase [NAD(P)+] [EC:1.1.1.261]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism [PATH:rde00600]
D RD1_2865 rafA; alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism
C 01040 Biosynthesis of unsaturated fatty acids
D RD1_1228 putative acyl-CoA thioesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:rde00230]
D RD1_0538 hydrolase, putative K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D RD1_2298 trgB; tellurite resistance protein TrgB K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D RD1_3978 deoB; phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D RD1_2870 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D RD1_3528 ribose-phosphate pyrophosphokinase putative K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D RD1_3247 amidophosphoribosyltransferase putative K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D RD1_1927 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D RD1_2253 phosphoribosylglycinamide formyltransferase putative K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D RD1_3232 purL; phosphoribosylformylglycinamidine synthase II K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3]
D RD1_2263 phosphoribosylformylglycinamidine synthase, PurS protein, putative K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3]
D RD1_2264 phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D RD1_2252 phosphoribosylformylglycinamidine cyclo-ligase putative K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D RD1_3511 purK; phosphoribosylaminoimidazole carboxylase, ATPase subunit K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D RD1_3510 purE; phosphoribosylaminoimidazole carboxylase, catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D RD1_2262 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D RD1_2559 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D RD1_0655 purH; bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D RD1_2373 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D RD1_2148 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D RD1_3959 putative 5-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D RD1_3249 surE; acid phosphatase SurE, putative K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D RD1_1634 deoD; purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D RD1_3503 conserved hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D RD1_2771 hpt; hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D RD1_2713 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D RD1_3111 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D RD1_0427 Ham1 protein-like protein K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D RD1_3201 gpt; xanthine-guanine phosphoribosyltransferase K00769 gpt; xanthine phosphoribosyltransferase [EC:2.4.2.22]
D RD1_4068 xdhA; xanthine dehydrogenase, A subunit K13481 xdhA; xanthine dehydrogenase small subunit [EC:1.17.1.4]
D RD1_4069 xdhB; xanthine dehydrogenase, B subunit K13482 xdhB; xanthine dehydrogenase large subunit [EC:1.17.1.4]
D RD1_2778 GMP synthase putative K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D RD1_2008 guaD; guanine deaminase K01487 guaD; guanine deaminase [EC:3.5.4.3]
D RD1_2638 guanylate kinase, putative K00942 gmk; guanylate kinase [EC:2.7.4.8]
D RD1_4061 ribonucleotide reductase, putative K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RD1_3193 nrdJ; ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RD1_3167 deoxyguanosinetriphosphate triphosphohydrolase, putative K01129 dgt; dGTPase [EC:3.1.5.1]
D RD1_0463 conserved hypothetical protein K06952 yfdR; 5'-nucleotidase [EC:3.1.3.89]
D RD1_1359 spoT; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, putative K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D RD1_2041 Ppx/GppA family phosphatase, putative K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D RD1_3053 Ppx/GppA family phosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D RD1_0501 putative cyclase K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D RD1_2687 cyaA; adenylate cyclase 1, putative K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D RD1_1912 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D RD1_0604 amn; AMP nucleosidase K01241 amn; AMP nucleosidase [EC:3.2.2.4]
D RD1_0605 ade; adenine deaminase K01486 ade; adenine deaminase [EC:3.5.4.2]
D RD1_1258 cpdB; 2`,3`-cyclic-nucleotide 2`-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D RD1_2012 conserved hypothetical protein K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16]
D RD1_1433 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D RD1_1116 adk-2; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D RD1_3133 mazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D RD1_3568 Ser/Thr protein phosphatase family protein, putative K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]
D RD1_B0030 sat; sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D RD1_0284 oxidoreductase, putative K22879 hpyO; FAD-dependent urate hydroxylase [EC:1.14.13.113]
D RD1_4150 conserved hypothetical protein K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]
D RD1_0861 hyuE; hydantoin racemase K16841 hpxA; allantoin racemase [EC:5.1.99.3]
D RD1_2405 hyuE; hydantoin racemase, putative K16841 hpxA; allantoin racemase [EC:5.1.99.3]
D RD1_2431 polysaccharide deacetylase family protein, putative K16842 hpxB; allantoinase [EC:3.5.2.5]
D RD1_4151 conserved hypothetical protein K16842 hpxB; allantoinase [EC:3.5.2.5]
D RD1_1128 conserved hypothetical protein K14977 ylbA; (S)-ureidoglycine aminohydrolase [EC:3.5.3.26]
D RD1_4152 allA; ureidoglycolate hydrolase K01483 allA; ureidoglycolate lyase [EC:4.3.2.3]
D RD1_3800 ureC; urease alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D RD1_3795 ureB; urease beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D RD1_3793 ureA; urease gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
C 00240 Pyrimidine metabolism [PATH:rde00240]
D RD1_3490 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D RD1_1963 carA; carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D RD1_3427 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D RD1_3235 pyrC; dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D RD1_3429 pyr; dihydroorotase, multifunctional complex type K01465 URA4; dihydroorotase [EC:3.5.2.3]
D RD1_3961 dihydroorotate oxidase, putative K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D RD1_3236 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D RD1_0720 pyrF; orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D RD1_2585 pyrH; uridylate kinase, putative K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D RD1_3111 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D RD1_3133 mazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D RD1_1686 maf; septum formation protein Maf, putative K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D RD1_0437 maf; septum formation protein, putative K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D RD1_1906 pyrG; CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D RD1_3913 cytidylate kinase, putative K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D RD1_3959 putative 5-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D RD1_3249 surE; acid phosphatase SurE, putative K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D RD1_3976 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D RD1_1258 cpdB; 2`,3`-cyclic-nucleotide 2`-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D RD1_2012 conserved hypothetical protein K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16]
D RD1_2734 conserved hypothetical protein K16329 psuG; pseudouridylate synthase [EC:4.2.1.70]
D RD1_3980 cdd; cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D RD1_1293 cytosine deaminase, putative K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D RD1_2362 cdd; cytosine deaminase K03365 FCY1; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D RD1_3160 2'-deoxycytidine 5'-triphosphate deaminase, putative K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D RD1_4061 ribonucleotide reductase, putative K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RD1_3193 nrdJ; ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RD1_0463 conserved hypothetical protein K06952 yfdR; 5'-nucleotidase [EC:3.1.3.89]
D RD1_3466 tmk; thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D RD1_1201 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D RD1_3979 deoA; thymidine phosphorylase K00758 deoA; thymidine phosphorylase [EC:2.4.2.4]
D RD1_1528 nucleoside phosphorylase, C -terminal domain, putative K00758 deoA; thymidine phosphorylase [EC:2.4.2.4]
D RD1_3494 tdk; thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21]
D RD1_1874 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D RD1_3104 glutamate synthase, small subunit, putative K17722 preT; dihydropyrimidine dehydrogenase (NAD+) subunit PreT [EC:1.3.1.1]
D RD1_3103 dihydroorotate dehydrogenase family protein, putative K17723 preA; dihydropyrimidine dehydrogenase (NAD+) subunit PreA [EC:1.3.1.1]
D RD1_3100 hydA; dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D RD1_2404 hydA; D-hydantoinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D RD1_3101 N-carbamoyl-L-amino acid hydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D RD1_1500 conserved hypothetical protein K09020 rutB; ureidoacrylate peracid hydrolase [EC:3.5.1.110]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:rde00250]
D RD1_3892 aatA; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RD1_0935 tyrB; aromatic amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D RD1_0818 aspartate racemase, probable K01779 racD; aspartate racemase [EC:5.1.1.13]
D RD1_3849 asnO; asparagine synthetase, putative K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D RD1_1750 sgaA; serine--glyoxylate aminotransferase, putative K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D RD1_2892 sgaA; serine--glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D RD1_1033 ald; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D RD1_0417 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D RD1_1591 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D RD1_1912 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D RD1_2559 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D RD1_3427 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D RD1_0839 gabT; 4-aminobutyrate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D RD1_2337 aminotransferase K16871 POP2; 4-aminobutyrate---pyruvate transaminase [EC:2.6.1.96]
D RD1_0927 gabD; succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D RD1_0060 gltB; glutamate synthase, large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D RD1_0063 gltD; glutamate synthase, small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D RD1_1787 gill; glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]
D RD1_2450 gdhA; glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D RD1_2509 putA; bifunctional PutA protein K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D RD1_1497 glutamine synthetase, putative K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RD1_1894 glutamine synthetase, putative K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RD1_1892 glutamine synthetase, putative K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RD1_2173 ipuC; gamma-glutamylisopropylamide synthetase, putative K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RD1_2569 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RD1_3490 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D RD1_1963 carA; carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D RD1_2684 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2]
D RD1_2264 phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D RD1_3305 glmS; glucosamine--fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D RD1_1726 SIS domain protein K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D RD1_2418 glucosamine--fructose-6-phosphate aminotransferase, putative K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D RD1_3247 amidophosphoribosyltransferase putative K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:rde00260]
D RD1_2157 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D RD1_0306 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RD1_2538 hom; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D RD1_2141 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D RD1_3525 ltaE; low-specificity L-threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48]
D RD1_3991 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RD1_4249 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RD1_1165 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RD1_1750 sgaA; serine--glyoxylate aminotransferase, putative K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D RD1_2892 sgaA; serine--glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D RD1_1204 2-hydroxyacid dehydrogenase, putative K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]
D RD1_4241 hydroxypyruvate reductase, putative K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D RD1_1981 ttuD; hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D RD1_0335 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D RD1_0197 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D RD1_3633 serA; D-3-phosphoglycerate dehydrogenase, putative K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D RD1_0196 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D RD1_0195 serB; phosphoserine phosphatase, putative K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D RD1_0199 kbl; 2-amino-3-ketobutyrate coenzyme A ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D RD1_0198 tdh; L-threonine 3-dehydrogenase K00060 tdh; threonine 3-dehydrogenase [EC:1.1.1.103]
D RD1_0127 hemA; 5-aminolevulinic acid synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37]
D RD1_1576 hemA; 5-aminolevulinic acid synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37]
D RD1_2827 hemA; 5-aminolevulinic acid synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37]
D RD1_3778 hemA; 5-aminolevulinic acid synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37]
D RD1_0535 amine oxidase family, flavin-containing K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D RD1_1225 gcvP; glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D RD1_0003 aminomethyltransferase, putative K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D RD1_1222 gcvT; aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D RD1_3858 glycine cleavage T-protein (aminomethyl transferase) family protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D RD1_1603 lpdA; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RD1_2995 lpdA; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RD1_3670 pyridine nucleotide-disulfide oxidoreductase, putative K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RD1_1223 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D RD1_1472 gatM; glycine amidinotransferase K00613 GATM; glycine amidinotransferase [EC:2.1.4.1]
D RD1_0929 cln; creatinase K08688 E3.5.3.3; creatinase [EC:3.5.3.3]
D RD1_2024 betA; choline dehydrogenase K00108 betA; choline dehydrogenase [EC:1.1.99.1]
D RD1_2023 betB; betaine aldehyde dehydrogenase K00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8]
D RD1_0019 dimethylglycine dehydrogenase, putative K00315 DMGDH; dimethylglycine dehydrogenase [EC:1.5.8.4]
D RD1_0607 dimethylglycine dehydrogenase, putative K00315 DMGDH; dimethylglycine dehydrogenase [EC:1.5.8.4]
D RD1_3093 dimethylglycine dehydrogenase, putative K00315 DMGDH; dimethylglycine dehydrogenase [EC:1.5.8.4]
D RD1_3434 dimethylglycine dehydrogenase, putative K00315 DMGDH; dimethylglycine dehydrogenase [EC:1.5.8.4]
D RD1_1345 dimethylglycine dehydrogenase, putative K00315 DMGDH; dimethylglycine dehydrogenase [EC:1.5.8.4]
D RD1_1704 soxA; sarcosine oxidase, alpha subunit K00302 soxA; sarcosine oxidase, subunit alpha [EC:1.5.3.24 1.5.3.1]
D RD1_1701 soxB; sarcosine oxidase, beta subunit K00303 soxB; sarcosine oxidase, subunit beta [EC:1.5.3.24 1.5.3.1]
D RD1_1705 soxG; sarcosine oxidase, gamma subunit, putative K00305 soxG; sarcosine oxidase, subunit gamma [EC:1.5.3.24 1.5.3.1]
D RD1_1702 soxD; sarcosine oxidase, delta subunit K00304 soxD; sarcosine oxidase, subunit delta [EC:1.5.3.24 1.5.3.1]
D RD1_1917 sdaA; L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D RD1_0416 ilvA; threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D RD1_3931 threonine dehydratase, putative K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D RD1_2891 srr; serine racemase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D RD1_3895 trpA; tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D RD1_3906 trpB; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D RD1_3431 ectC; ectoine synthase, putative K06720 ectC; L-ectoine synthase [EC:4.2.1.108]
D RD1_3474 peptidase, M24 family protein, putative K15783 doeA; ectoine hydrolase [EC:3.5.4.44]
D RD1_3475 conserved hypothetical protein K15784 doeB; N2-acetyl-L-2,4-diaminobutanoate deacetylase [EC:3.5.1.125]
C 00270 Cysteine and methionine metabolism [PATH:rde00270]
D RD1_3015 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D RD1_1129 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D RD1_2941 cysK; O-acetylserine sulfhydrylase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D RD1_2299 cysB; cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D RD1_3674 pyridoxal-phosphate dependent enzyme K01738 cysK; cysteine synthase [EC:2.5.1.47]
D RD1_1336 aminotransferase, putative K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D RD1_3659 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D RD1_3660 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D RD1_2260 homocysteine S-methyltransferase, putative K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D RD1_3057 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase, putative K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D RD1_3941 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D RD1_3916 metK; S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D RD1_1639 tral; autoinducer synthesis protein Tral, putative K20249 raiI; acyl homoserine lactone synthase [EC:2.3.1.184]
D RD1_2383 5-methylthioribose kinase, putative K00899 mtnK; 5-methylthioribose kinase [EC:2.7.1.100]
D RD1_2150 methylthioadenosine phosphorylase, putative K00772 mtaP; 5'-methylthioadenosine phosphorylase [EC:2.4.2.28]
D RD1_3503 conserved hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D RD1_2424 amidohydrolase family protein K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28]
D RD1_2384 translation initiation factor, aIF-2B alpha subunit, putative K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23]
D RD1_0024 conserved hypothetical protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14]
D RD1_C0014 DNA-cytosine methyltransferase, putative K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D RD1_0465 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D RD1_2157 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D RD1_0306 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RD1_2538 hom; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D RD1_2784 metA; homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D RD1_1834 metB; O-acetylhomoserine sulfhydrylase, probable K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D RD1_1939 metZ; O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
D RD1_2640 mdeA; methionine gamma-lyase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
D RD1_0553 ilvE; branched-chain amino acid aminotransferase, putative K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RD1_1654 ilvE; branched-chain-amino-acid aminotransferase, putative K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RD1_0990 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RD1_4077 gsh; glutamate-cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D RD1_1192 gshB; glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D RD1_3892 aatA; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RD1_0935 tyrB; aromatic amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D RD1_0934 mst; 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D RD1_1617 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RD1_2049 malate/L-lactate dehydrogenase, putative K16844 comC; (2R)-3-sulfolactate dehydrogenase (NADP+) [EC:1.1.1.338]
D RD1_0819 ACC deaminase/D-cysteine desulfhydrase family K17950 cuyA; L-cysteate sulfo-lyase [EC:4.4.1.25]
D RD1_1838 ACC deaminase/D-cysteine desulfhydrase family K17950 cuyA; L-cysteate sulfo-lyase [EC:4.4.1.25]
D RD1_1917 sdaA; L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D RD1_0197 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D RD1_3633 serA; D-3-phosphoglycerate dehydrogenase, putative K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D RD1_0196 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:rde00280]
D RD1_0553 ilvE; branched-chain amino acid aminotransferase, putative K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RD1_1654 ilvE; branched-chain-amino-acid aminotransferase, putative K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RD1_0990 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RD1_2926 pdhB; pyruvate dehydrogenase E1 component, beta subunit, putative K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4]
D RD1_1603 lpdA; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RD1_2995 lpdA; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RD1_3670 pyridine nucleotide-disulfide oxidoreductase, putative K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RD1_0611 acdA; acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D RD1_2065 acyl-CoA dehydrogenase family protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D RD1_3301 ivd; isovaleryl-CoA dehydrogenase K00253 IVD; isovaleryl-CoA dehydrogenase [EC:1.3.8.4]
D RD1_3973 fadJ; fatty acid oxidation complex alpha subunit, putative K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D RD1_2032 pccA; propionyl-CoA carboxylase, alpha subunit K01965 PCCA; propionyl-CoA carboxylase alpha subunit [EC:6.4.1.3]
D RD1_2028 pccB; propionyl-CoA carboxylase, beta subunit K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15]
D RD1_1179 conserved hypothetical protein K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D RD1_2035 mutA; methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D RD1_2751 3-hydroxyisobutyrate dehydrogenase, putative K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
D RD1_2540 garR; 2-hydroxy-3-oxopropionate reductase, putative K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
D RD1_2990 mmsA; methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D RD1_0633 ald; aldehyde dehydrogenase family protein, putative K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RD1_0660 ald; aldehyde dehydrogenase family protein, putative K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RD1_1474 malonyl-CoA synthetase K18661 matB; malonyl-CoA/methylmalonyl-CoA synthetase [EC:6.2.1.76 6.2.1.-]
D RD1_0839 gabT; 4-aminobutyrate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D RD1_3297 mccA; methylcrotonyl-CoA carboxylase, alpha subunit K01968 MCCC1; 3-methylcrotonyl-CoA carboxylase alpha subunit [EC:6.4.1.4]
D RD1_3298 mccB; methylcrotonyl-CoA carboxylase, beta subunit K01969 MCCC2; 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4]
D RD1_3294 enoyl-CoA hydratase/isomerase family protein K13766 liuC; methylglutaconyl-CoA hydratase [EC:4.2.1.18]
D RD1_3295 mvaB; hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D RD1_2130 dxnG; 3-oxoadipate CoA-succinyl transferase, alpha subunit K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D RD1_2128 dxnH; 3-oxoadipate CoA-succinyl transferase, beta subunit K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
D RD1_0201 bktB; beta-ketothiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RD1_3394 phbA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RD1_0025 thiolase, N-terminal domain K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RD1_3972 fadA; fatty acid oxidation complex beta subunit K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:rde00290]
D RD1_0416 ilvA; threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D RD1_3931 threonine dehydratase, putative K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D RD1_2891 srr; serine racemase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D RD1_0616 leuC; 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D RD1_0226 leuD; 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D RD1_0228 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D RD1_3789 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D RD1_2812 ilvB; acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D RD1_1674 alsS; acetolactate synthase, putative K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D RD1_2449 ilvB; acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D RD1_2813 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D RD1_1954 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D RD1_0332 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D RD1_0553 ilvE; branched-chain amino acid aminotransferase, putative K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RD1_1654 ilvE; branched-chain-amino-acid aminotransferase, putative K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RD1_0990 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RD1_1211 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D RD1_3182 2-isopropylmalate synthase/homocitrate synthase family protein K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:rde00300]
D RD1_2538 hom; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D RD1_2157 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D RD1_0306 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RD1_0972 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D RD1_0744 dapA; dihydrodipicolinate synthase, putative K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D RD1_0650 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D RD1_0189 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D RD1_1676 argD; acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D RD1_0090 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D RD1_0185 dapE; putative succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D RD1_0813 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D RD1_1595 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D RD1_0698 saccharopine dehydrogenase, putative K00290 LYS1; saccharopine dehydrogenase (NAD+, L-lysine forming) [EC:1.5.1.7]
D RD1_3365 murE; UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D RD1_3364 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:rde00310]
D RD1_0698 saccharopine dehydrogenase, putative K00290 LYS1; saccharopine dehydrogenase (NAD+, L-lysine forming) [EC:1.5.1.7]
D RD1_1608 sucB; dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D RD1_1603 lpdA; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RD1_2995 lpdA; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RD1_3670 pyridine nucleotide-disulfide oxidoreductase, putative K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RD1_3956 gcdH; glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D RD1_3973 fadJ; fatty acid oxidation complex alpha subunit, putative K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D RD1_0201 bktB; beta-ketothiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RD1_3394 phbA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RD1_0025 thiolase, N-terminal domain K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RD1_3972 fadA; fatty acid oxidation complex beta subunit K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RD1_1495 tryptophan monooxygenase, putative K00468 davB; lysine 2-monooxygenase [EC:1.13.12.2]
D RD1_1496 hydrolase, putative K01506 davA; 5-aminopentanamidase [EC:3.5.1.30]
D RD1_0839 gabT; 4-aminobutyrate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D RD1_0927 gabD; succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D RD1_2649 conserved hypothetical protein K18013 kce; 3-keto-5-aminohexanoate cleavage enzyme [EC:2.3.1.247]
D RD1_1004 dat; D-alanine aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D RD1_0633 ald; aldehyde dehydrogenase family protein, putative K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RD1_0660 ald; aldehyde dehydrogenase family protein, putative K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00220 Arginine biosynthesis [PATH:rde00220]
D RD1_1677 argF; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D RD1_0417 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D RD1_1591 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D RD1_1416 arcA; arginase K01476 rocF; arginase [EC:3.5.3.1]
D RD1_3800 ureC; urease alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D RD1_3795 ureB; urease beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D RD1_3793 ureA; urease gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
D RD1_2684 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2]
D RD1_2264 phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D RD1_1497 glutamine synthetase, putative K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RD1_1894 glutamine synthetase, putative K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RD1_1892 glutamine synthetase, putative K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RD1_2173 ipuC; gamma-glutamylisopropylamide synthetase, putative K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RD1_2569 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RD1_3490 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D RD1_1963 carA; carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D RD1_1787 gill; glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]
D RD1_2450 gdhA; glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D RD1_3892 aatA; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RD1_0935 tyrB; aromatic amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D RD1_0384 argJ; glutamate N-acetyltransferase, putative K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
D RD1_0952 acetyltransferase, putative K22476 K22476; N-acetylglutamate synthase [EC:2.3.1.1]
D RD1_1452 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D RD1_3227 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D RD1_1676 argD; acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D RD1_3311 argE; acetylornithine deacetylase, putative K01438 argE; acetylornithine deacetylase [EC:3.5.1.16]
D RD1_4143 argE; acetylornithine deacetylase, putative K01438 argE; acetylornithine deacetylase [EC:3.5.1.16]
C 00330 Arginine and proline metabolism [PATH:rde00330]
D RD1_1472 gatM; glycine amidinotransferase K00613 GATM; glycine amidinotransferase [EC:2.1.4.1]
D RD1_0537 creatinine amidohydrolase K01470 E3.5.2.10; creatinine amidohydrolase [EC:3.5.2.10]
D RD1_1293 cytosine deaminase, putative K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D RD1_2362 cdd; cytosine deaminase K03365 FCY1; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D RD1_3584 hyuA; hydantoin utilization protein A, putative K01473 hyuA; N-methylhydantoinase A [EC:3.5.2.14]
D RD1_3585 hydantoin utilization protein B, putative K01474 hyuB; N-methylhydantoinase B [EC:3.5.2.14]
D RD1_0929 cln; creatinase K08688 E3.5.3.3; creatinase [EC:3.5.3.3]
D RD1_2715 agmatinase, putative K01480 speB; agmatinase [EC:3.5.3.11]
D RD1_3131 agmatinase, putative K01480 speB; agmatinase [EC:3.5.3.11]
D RD1_0172 aminotransferase, class III K12256 spuC; putrescine---pyruvate transaminase [EC:2.6.1.113]
D RD1_0633 ald; aldehyde dehydrogenase family protein, putative K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RD1_0660 ald; aldehyde dehydrogenase family protein, putative K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RD1_0535 amine oxidase family, flavin-containing K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D RD1_3185 aspC; aspartate aminotransferase K12252 aruH; arginine:pyruvate transaminase [EC:2.6.1.84]
D RD1_1943 ilvB; acetohydroxy acid synthase large subunit, putative K12253 aruI; 5-guanidino-2-oxopentanoate decarboxylase [EC:4.1.1.75]
D RD1_3130 agmatinase, putative K12255 gbuA; guanidinobutyrase [EC:3.5.3.7]
D RD1_1891 oxidoreductase, FAD-binding, putative K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-]
D RD1_1416 arcA; arginase K01476 rocF; arginase [EC:3.5.3.1]
D RD1_2848 pyrroline-5-carboxylate reductase, putative K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D RD1_3497 proC; pyrroline-5-carboxylate reductase, putative K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D RD1_2509 putA; bifunctional PutA protein K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D RD1_1415 arcB; ornithine cyclodeaminase K01750 E4.3.1.12; ornithine cyclodeaminase [EC:4.3.1.12]
D RD1_2659 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D RD1_2658 proA; gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D RD1_0391 pip; proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D RD1_3892 aatA; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RD1_0935 tyrB; aromatic amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D RD1_1004 dat; D-alanine aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
C 00340 Histidine metabolism [PATH:rde00340]
D RD1_4063 hisG; ATP phosphoribosyltransferase, putative K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D RD1_4064 hisZ; histidyl-tRNA synthetase,-like protein, putative K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit
D RD1_3562 hisE; phosphoribosyl-ATP pyrophosphatase K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31]
D RD1_2607 hisI; phosphoribosyl-AMP cyclohydrolase K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19]
D RD1_3560 hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D RD1_3557 hisH; imidazole glycerol phosphate synthase subunit HisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D RD1_3561 hisF; imidazole glycerol phosphate synthase subunit HisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D RD1_3556 hisB; imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D RD1_3388 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RD1_1752 aminotransferase, putative K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RD1_1068 hisD; histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D RD1_3678 hutH; histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
D RD1_3682 hutU; urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49]
D RD1_3677 hutI; imidazolonepropionase, putative K01468 hutI; imidazolonepropionase [EC:3.5.2.7]
D RD1_3676 hutF; formiminoglutamate deiminase, putative K05603 hutF; formimidoylglutamate deiminase [EC:3.5.3.13]
D RD1_3679 hutG; N-formylglutamate amidohydrolase, putative K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68]
D RD1_2061 n-formylglutamate amidohydrolase, putative K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68]
D RD1_0633 ald; aldehyde dehydrogenase family protein, putative K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RD1_0660 ald; aldehyde dehydrogenase family protein, putative K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RD1_0535 amine oxidase family, flavin-containing K00274 MAO; monoamine oxidase [EC:1.4.3.4]
C 00350 Tyrosine metabolism [PATH:rde00350]
D RD1_3892 aatA; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RD1_0935 tyrB; aromatic amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D RD1_3388 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RD1_1752 aminotransferase, putative K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RD1_1830 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D RD1_3651 hmgA; homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5]
D RD1_3652 maiA; maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2]
D RD1_3653 fahA; fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2]
D RD1_0535 amine oxidase family, flavin-containing K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D RD1_0887 flhA; glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D RD1_3806 flhA; glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D RD1_0304 bphF; 4-hydroxy-2-oxovalerate aldolase K02510 hpaI; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52]
D RD1_0927 gabD; succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D RD1_1348 fumarylacetoacetate hydrolase, putative K16165 nagK; fumarylpyruvate hydrolase [EC:3.7.1.20]
C 00360 Phenylalanine metabolism [PATH:rde00360]
D RD1_0535 amine oxidase family, flavin-containing K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D RD1_3221 paaB; enoyl-CoA hydratase/isomerase family protein K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18]
D RD1_1385 bhbD; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D RD1_3892 aatA; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RD1_0935 tyrB; aromatic amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D RD1_3388 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RD1_1752 aminotransferase, putative K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RD1_1830 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D RD1_1004 dat; D-alanine aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D RD1_2195 katG; catalase-peroxidase K03782 katG; catalase-peroxidase [EC:1.11.1.21]
D RD1_0947 pyridine nucleotide-disulphide oxidoreductase, putative K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3]
C 00380 Tryptophan metabolism [PATH:rde00380]
D RD1_3643 kynU; kynureninase, putative K01556 KYNU; kynureninase [EC:3.7.1.3]
D RD1_1608 sucB; dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D RD1_1603 lpdA; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RD1_2995 lpdA; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RD1_3670 pyridine nucleotide-disulfide oxidoreductase, putative K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RD1_3956 gcdH; glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D RD1_3973 fadJ; fatty acid oxidation complex alpha subunit, putative K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D RD1_0201 bktB; beta-ketothiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RD1_3394 phbA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RD1_0025 thiolase, N-terminal domain K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RD1_3972 fadA; fatty acid oxidation complex beta subunit K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RD1_0535 amine oxidase family, flavin-containing K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D RD1_0633 ald; aldehyde dehydrogenase family protein, putative K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RD1_0660 ald; aldehyde dehydrogenase family protein, putative K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RD1_1908 nthA; nitrile hydratase, alpha subunit K01721 nthA; nitrile hydratase subunit alpha [EC:4.2.1.84]
D RD1_1909 nthB; nitrile hydratase, beta subunit K20807 nthB; nitrile hydratase subunit beta [EC:4.2.1.84]
D RD1_2195 katG; catalase-peroxidase K03782 katG; catalase-peroxidase [EC:1.11.1.21]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:rde00400]
D RD1_2635 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D RD1_3087 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D RD1_2651 aroQ; 3-dehydroquinate dehydratase, type II K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D RD1_0438 aroE; shikimate 5-dehydrogenase, putative K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D RD1_3088 aroK; shikimate kinase, putative K00891 aroK; shikimate kinase [EC:2.7.1.71]
D RD1_3914 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D RD1_0556 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D RD1_3205 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D RD1_3209 trpG; anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D RD1_3210 trpD; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D RD1_3907 trpF; N-(5'phosphoribosyl)anthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D RD1_3213 trpC; indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D RD1_3895 trpA; tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D RD1_3906 trpB; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D RD1_1312 chorismate mutase, putative K04092 tyrA1; chorismate mutase [EC:5.4.99.5]
D RD1_3387 tyrC; prephenate dehydrogenase K00220 tyrC; cyclohexadieny/prephenate dehydrogenase [EC:1.3.1.43 1.3.1.12]
D RD1_1261 pheA; prephenate dehydratase, putative K04518 pheA2; prephenate dehydratase [EC:4.2.1.51]
D RD1_3892 aatA; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RD1_0935 tyrB; aromatic amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D RD1_3388 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RD1_1752 aminotransferase, putative K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:rde00410]
D RD1_0839 gabT; 4-aminobutyrate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D RD1_0633 ald; aldehyde dehydrogenase family protein, putative K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RD1_0660 ald; aldehyde dehydrogenase family protein, putative K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RD1_0091 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D RD1_3104 glutamate synthase, small subunit, putative K17722 preT; dihydropyrimidine dehydrogenase (NAD+) subunit PreT [EC:1.3.1.1]
D RD1_3103 dihydroorotate dehydrogenase family protein, putative K17723 preA; dihydropyrimidine dehydrogenase (NAD+) subunit PreA [EC:1.3.1.1]
D RD1_3100 hydA; dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D RD1_2404 hydA; D-hydantoinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D RD1_3101 N-carbamoyl-L-amino acid hydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D RD1_3973 fadJ; fatty acid oxidation complex alpha subunit, putative K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D RD1_1475 mcd; malonyl-CoA decarboxylase K01578 MLYCD; malonyl-CoA decarboxylase [EC:4.1.1.9]
D RD1_2990 mmsA; methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
C 00430 Taurine and hypotaurine metabolism [PATH:rde00430]
D RD1_0028 ggtA; gamma-glutamyltranspeptidase, putative K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D RD1_2179 ggtA; gamma-glutamyltranspeptidase, putative K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D RD1_3436 ggt; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D RD1_0981 tpa; taurine--pyruvate aminotransferase K03851 tpa; taurine-pyruvate aminotransferase [EC:2.6.1.77]
D RD1_1033 ald; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D RD1_0829 tauX; taurine dehydrogenase small K07255 tauX; taurine dehydrogenase small subunit [EC:1.4.2.-]
D RD1_0828 tauD; taurine dehydrogenase large subunit, putative K07256 tauY; taurine dehydrogenase large subunit [EC:1.4.2.-]
D RD1_0826 xsc; sulfoacetaldehyde acetyltransferase K03852 xsc; sulfoacetaldehyde acetyltransferase [EC:2.3.3.15]
D RD1_0977 xsc; sulphoacetaldehyde acetyltransferase K03852 xsc; sulfoacetaldehyde acetyltransferase [EC:2.3.3.15]
D RD1_0821 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D RD1_3831 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D RD1_2917 conserved hypothetical protein K26005 sauT; sulfoacetate-CoA ligase [EC:6.2.1.-]
D RD1_2918 adhE; aldehyde-alcohol dehydrogenase, putative K15515 sauS; sulfoacetaldehyde dehydrogenase [EC:1.2.1.81]
C 00440 Phosphonate and phosphinate metabolism [PATH:rde00440]
D RD1_2392 phnI; phosphonate metabolism protein, putative K06164 phnI; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI [EC:2.7.8.37]
D RD1_2394 phnG; alkylphosphonate utilization protein PhnG K06166 phnG; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG [EC:2.7.8.37]
D RD1_2393 phnH; phosphonate metabolism protein, putative K06165 phnH; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH [EC:2.7.8.37]
D RD1_2389 phnL; phosphonate C-P lyase system protein PhnL K05780 phnL; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [EC:2.7.8.37]
D RD1_2387 phnM; phosphonate metabolism protein PhnM K06162 phnM; alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase [EC:3.6.1.63]
D RD1_3512 phosphonate metabolism domain protein K06162 phnM; alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase [EC:3.6.1.63]
D RD1_2391 phosphonate metabolism protein PhnJ K06163 phnJ; alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase [EC:4.7.1.1]
D RD1_3469 conserved hypothetical protein K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]
C 00450 Selenocompound metabolism [PATH:rde00450]
D RD1_1336 aminotransferase, putative K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D RD1_3659 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D RD1_3660 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D RD1_2260 homocysteine S-methyltransferase, putative K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D RD1_3057 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase, putative K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D RD1_3941 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D RD1_2689 sufS; cysteine desulfurase, putative K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D RD1_3505 trxB; thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D RD1_B0030 sat; sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D RD1_2516 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:rde00460]
D RD1_2318 bglA; beta-glucosidase A K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D RD1_0028 ggtA; gamma-glutamyltranspeptidase, putative K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D RD1_2179 ggtA; gamma-glutamyltranspeptidase, putative K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D RD1_3436 ggt; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D RD1_3991 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RD1_4249 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RD1_1165 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RD1_3602 fmdA; amidase K01455 E3.5.1.49; formamidase [EC:3.5.1.49]
C 00470 D-Amino acid metabolism [PATH:rde00470]
D RD1_3240 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D RD1_1004 dat; D-alanine aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D RD1_3351 ddlB; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RD1_2684 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2]
D RD1_2264 phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D RD1_3228 murI; glutamate racemase, putative K01776 murI; glutamate racemase [EC:5.1.1.3]
D RD1_3361 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D RD1_1002 conserved hypothetical protein K26272 dgcN; D-glutamate N-acetyltransferase [EC:2.3.1.312]
D RD1_1003 conserved hypothetical protein K19802 ycjG; L-Ala-D/L-Glu epimerase / N-acetyl-D-glutamate racemase [EC:5.1.1.20 5.1.1.25]
D RD1_0818 aspartate racemase, probable K01779 racD; aspartate racemase [EC:5.1.1.13]
D RD1_0813 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D RD1_1595 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:rde00480]
D RD1_0028 ggtA; gamma-glutamyltranspeptidase, putative K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D RD1_2179 ggtA; gamma-glutamyltranspeptidase, putative K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D RD1_3436 ggt; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D RD1_3384 chaC; cation transport protein K07232 CHAC; glutathione-specific gamma-glutamylcyclotransferase [EC:4.3.2.7]
D RD1_0245 LamB/YcsF family protein, putative K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9]
D RD1_0244 allophanate hydrolase subunit 2, putative K23124 pxpC; 5-oxoprolinase (ATP-hydrolysing) subunit C [EC:3.5.2.9]
D RD1_4077 gsh; glutamate-cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D RD1_1192 gshB; glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D RD1_0314 pepA; leucine aminopeptidase, putative K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D RD1_3118 pepA; cytosol aminopeptidase, putative K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D RD1_3327 pepN; aminopeptidase N, putative K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D RD1_4194 pepN; aminopeptidase, putative K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D RD1_0058 glutathione S-transferase domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RD1_3296 gst; glutathione S-transferase, putative K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RD1_3971 gst; glutathione S-transferase, putative K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RD1_0699 gst; glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RD1_0053 glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RD1_1133 gst; glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RD1_1194 conserved domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RD1_3777 conserved hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RD1_1919 gor; glutathione reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7]
D RD1_2204 icd; isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D RD1_2704 icd; isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D RD1_2722 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D RD1_0599 gpo; glutathione peroxidase, putative K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
D RD1_0946 antioxidant, AhpC/Tsa family, putative K24138 prx3; glutaredoxin/glutathione-dependent peroxiredoxin [EC:1.11.1.25 1.11.1.27]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis [PATH:rde00540]
D RD1_2596 lpxA; acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D RD1_3346 lpxC; UDP-3-0-acyl N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D RD1_2620 lpxD; UDP-3-O-3-hydroxymyristoyl glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D RD1_2597 conserved hypothetical protein K09949 lpxI; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D RD1_2598 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D RD1_0294 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D RD1_0368 kdsD; arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D RD1_1661 kdsA; 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D RD1_0375 kdsB; 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D RD1_3308 kdtA; 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D RD1_0293 3-deoxy-D-manno-octulosonic-acid K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D RD1_2557 lipid A biosynthesis lauroyl acyltransferase, putative K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D RD1_2357 conserved hypothetical protein K12976 pagL; lipid A 3-O-deacylase [EC:3.1.1.-]
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:rde00541]
D RD1_0374 gtaB; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D RD1_4203 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RD1_B0040 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RD1_B0057 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D RD1_B0043 UDP-glucuronate 5'-epimerase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D RD1_B0017 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D RD1_B0019 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D RD1_B0020 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D RD1_B0018 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D RD1_0568 DegT/DnrJ/EryC1/StrS aminotransferase family K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59]
D RD1_B0036 xanB; mannose-1-phosphate guanylyltransferase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D RD1_B0016 noeK; phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D RD1_3304 glmU; UDP-N-acetylglucosamine pyrophosphorylase, putative K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D RD1_1493 UDP-glucose/GDP-mannose dehydrogenase, putative K13015 wbpA; UDP-N-acetyl-D-glucosamine dehydrogenase [EC:1.1.1.136]
C 00550 Peptidoglycan biosynthesis [PATH:rde00550]
D RD1_1065 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D RD1_3352 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D RD1_3355 murC; UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D RD1_3361 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D RD1_3365 murE; UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D RD1_3351 ddlB; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RD1_3364 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D RD1_2587 uppS; undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D RD1_0064 uppP; undecaprenyl-diphosphatase, putative K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D RD1_B0015 PAP2 superfamily protein, putative K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D RD1_3363 mraY; phospho-N-acetylmuramoyl-pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D RD1_3357 UDP-N-acetylglucosamine:N-acetylmuramyl-pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D RD1_0059 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D RD1_2820 mrcA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D RD1_1206 pbpA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D RD1_3366 penicillin-binding protein, putative K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D RD1_3465 dacC; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D RD1_1244 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
C 00552 Teichoic acid biosynthesis [PATH:rde00552]
D RD1_0064 uppP; undecaprenyl-diphosphatase, putative K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D RD1_B0015 PAP2 superfamily protein, putative K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:rde00543]
D RD1_3015 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D RD1_1129 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:rde00730]
D RD1_0746 thiD; phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D RD1_3612 thiD; phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D RD1_2698 nifS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RD1_0802 nifS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RD1_0747 thiO; thiamine biosynthesis oxidoreductase ThiO K03153 thiO; glycine oxidase [EC:1.4.3.19]
D RD1_0969 oxidoreductase, FAD-binding, putative K03153 thiO; glycine oxidase [EC:1.4.3.19]
D RD1_0101 dxs; 1-deoxy-D-xylulose-5-phosphate synthase, putative K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D RD1_0548 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D RD1_0749 thiG; Thiazole biosynthesis protein ThiG K03149 thiG; thiazole synthase [EC:2.8.1.10]
D RD1_3610 thiM; hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D RD1_2730 thiE; thiamine-phosphate pyrophosphorylase, putative K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D RD1_0750 thiE; thiamine-phosphate pyrophosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D RD1_3611 thiDE; bifunctional ThiED protein K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D RD1_1915 thiN; thiamine pyrophosphokinase, putative K00949 thiN; thiamine pyrophosphokinase [EC:2.7.6.2]
D RD1_1433 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D RD1_1116 adk-2; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D RD1_0753 tenA; transcriptional activator, putative K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D RD1_3613 tenA; transcriptional regulator, putative K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D RD1_0755 tenA; transcriptional regulator, putative K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
C 00740 Riboflavin metabolism [PATH:rde00740]
D RD1_0043 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D RD1_1801 ribB; 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D RD1_1799 ribD; riboflavin biosynthesis protein ribD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D RD1_0560 ribH; 6,7-dimethyl-8-ribityllumazine synthase, putative K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D RD1_1803 ribH; riboflavin synthase, beta subunit K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D RD1_1800 ribE; riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D RD1_3523 ribF; riboflavin biosynthesis protein RibF K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D RD1_3815 bluB; cobalamin biosynthesis protein BluB K04719 bluB; 5,6-dimethylbenzimidazole synthase [EC:1.13.11.79]
D RD1_3610 thiM; hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D RD1_0538 hydrolase, putative K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D RD1_2298 trgB; tellurite resistance protein TrgB K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
C 00750 Vitamin B6 metabolism [PATH:rde00750]
D RD1_3198 pdxH; pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D RD1_0196 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D RD1_3123 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
D RD1_1362 pdxJ; pyridoxal phosphate biosynthetic protein PdxJ K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2]
D RD1_2141 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:rde00760]
D RD1_3642 conserved hypothetical protein K06989 nadX; aspartate dehydrogenase [EC:1.4.1.21]
D RD1_1527 nadC; nicotinate-nucleotide pyrophosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D RD1_0586 pncB; nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D RD1_1634 deoD; purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D RD1_3959 putative 5-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D RD1_3249 surE; acid phosphatase SurE, putative K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D RD1_1243 nadD; nicotinate (nicotinamide) nucleotide adenylyltransferase, putative K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D RD1_3133 mazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D RD1_1259 hydrolase, putative K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D RD1_1215 nadE; glutamine-dependent NAD(+) synthetase K01916 nadE; NAD+ synthase [EC:6.3.1.5]
D RD1_2769 cinA; competence/damage-inducible protein CinA, putative K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D RD1_0585 pncA; pyrazinamidase/nicotinamidase K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-]
D RD1_1683 npdA; NAD-dependent deacetylase K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D RD1_3989 ppnK; inorganic polyphosphate/ATP-NAD kinase, putative K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D RD1_3319 pntA; NAD(P) transhydrogenase, alpha subunit K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D RD1_3318 pntB; NAD(P) transhydrogenase, beta subunit K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
D RD1_3471 Asp/Glu/Hydantoin racemase family protein, putative K01799 nicE; maleate isomerase [EC:5.2.1.1]
D RD1_1534 conserved hypothetical protein K20449 hnr; 6-hydroxynicotinate reductase [EC:1.3.7.1]
D RD1_1529 amidohydrolase family protein K15358 ena; enamidase [EC:3.5.2.18]
D RD1_0927 gabD; succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:rde00770]
D RD1_2812 ilvB; acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D RD1_1674 alsS; acetolactate synthase, putative K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D RD1_2449 ilvB; acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D RD1_2813 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D RD1_1954 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D RD1_0332 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D RD1_0093 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D RD1_2198 panE; 2-dehydropantoate 2-reductase, putative K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D RD1_0091 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D RD1_3266 transcriptional activator, Baf family, putative K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D RD1_1200 coaBC; coenzyme A biosynthesis bifunctional protein coaBC K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D RD1_3133 mazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D RD1_2985 coaD; pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D RD1_0439 coaE; dephospho-CoA kinase, putative K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D RD1_1364 acpS; holo-(acyl-carrier-protein) synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D RD1_0553 ilvE; branched-chain amino acid aminotransferase, putative K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RD1_1654 ilvE; branched-chain-amino-acid aminotransferase, putative K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RD1_0990 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RD1_3104 glutamate synthase, small subunit, putative K17722 preT; dihydropyrimidine dehydrogenase (NAD+) subunit PreT [EC:1.3.1.1]
D RD1_3103 dihydroorotate dehydrogenase family protein, putative K17723 preA; dihydropyrimidine dehydrogenase (NAD+) subunit PreA [EC:1.3.1.1]
D RD1_3100 hydA; dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D RD1_2404 hydA; D-hydantoinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D RD1_3101 N-carbamoyl-L-amino acid hydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D RD1_0633 ald; aldehyde dehydrogenase family protein, putative K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RD1_0660 ald; aldehyde dehydrogenase family protein, putative K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00780 Biotin metabolism [PATH:rde00780]
D RD1_3924 fabB; 3-oxoacyl-(acyl-carrier-protein) synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D RD1_3036 fabF; 3-oxoacyl-(acyl carrier protein) synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D RD1_3039 oxidoreductase, short chain dehydrogenase/reductase family K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RD1_3261 oxidoreductase, putative K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RD1_0098 linX; 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase, putative K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RD1_3996 oxidoreductase, putative K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RD1_2595 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D RD1_3199 fabI-2; enoyl-(acyl-carrier-protein) reductase, putative K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D RD1_3925 fabI; enoyl-(acyl-carrier-protein) reductase, putative K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D RD1_3267 biotin--acetyl-CoA-carboxylase ligase, putative K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:rde00785]
D RD1_1970 lipB; lipoate-protein ligase B, putative K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D RD1_2773 lipA; lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D RD1_1603 lpdA; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RD1_2995 lpdA; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RD1_3670 pyridine nucleotide-disulfide oxidoreductase, putative K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RD1_3011 pdhA; pyruvate dehydrogenase complex, E1 component, alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D RD1_3013 pdhB; pyruvate dehydrogenase complex, E1 component, beta subunit K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D RD1_3014 pdhC; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D RD1_1609 sucA; alpha-ketoglutarate dehydrogenase K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D RD1_1608 sucB; dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D RD1_2926 pdhB; pyruvate dehydrogenase E1 component, beta subunit, putative K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4]
D RD1_1225 gcvP; glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D RD1_0003 aminomethyltransferase, putative K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D RD1_1222 gcvT; aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D RD1_3858 glycine cleavage T-protein (aminomethyl transferase) family protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D RD1_1223 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:rde00790]
D RD1_1941 conserved hypothetical protein K09007 folE2; GTP cyclohydrolase IB [EC:3.5.4.16]
D RD1_1950 folB; dihydroneopterin aldolase, putative K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D RD1_1357 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D RD1_1951 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D RD1_1875 folA; dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D RD1_0327 folC; folC bifunctional protein K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D RD1_0043 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D RD1_1801 ribB; 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D RD1_3657 pabB; para-aminobenzoate synthase, component I, putative K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85]
D RD1_0944 pcd; pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D RD1_3307 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D RD1_3214 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D RD1_4084 moaE; molybdopterin converting factor, subunit 2 K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D RD1_3423 moaB; molybdenum cofactor biosynthesis protein B K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75]
D RD1_3215 moaA; molybdenum cofactor biosynthesis protein A, putative K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D RD1_2448 moeA; molybdopterin biosynthesis protein moeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D RD1_3407 moeA; molybdopterin biosynthesis protein, putative K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D RD1_2975 molybdopterin biosynthesis protein, putative K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76]
D RD1_2683 conserved hypothetical protein K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76]
D RD1_3409 mobA; molybdopterin-guanine dinucleotide biosynthesis protein A K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:rde00670]
D RD1_1875 folA; dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D RD1_4235 fhs; formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D RD1_4237 folD; FolD bifunctional protein K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D RD1_4236 folD; FolD bifunctional protein K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D RD1_2105 folD; FolD bifunctional protein K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D RD1_3991 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RD1_4249 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RD1_1165 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RD1_2253 phosphoribosylglycinamide formyltransferase putative K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D RD1_0655 purH; bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D RD1_1339 fmt; methionyl-tRNA formyltransferase, putative K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D RD1_0003 aminomethyltransferase, putative K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D RD1_1222 gcvT; aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D RD1_3858 glycine cleavage T-protein (aminomethyl transferase) family protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D RD1_3659 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D RD1_3660 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D RD1_2260 homocysteine S-methyltransferase, putative K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D RD1_3057 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase, putative K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D RD1_1874 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D RD1_1762 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D RD1_3056 metF; 5,10-methylenetetrahydrofolate reductase, putative K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D RD1_2010 5-formyltetrahydrofolate cyclo-ligase, putative K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:rde00860]
D RD1_0127 hemA; 5-aminolevulinic acid synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37]
D RD1_1576 hemA; 5-aminolevulinic acid synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37]
D RD1_2827 hemA; 5-aminolevulinic acid synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37]
D RD1_3778 hemA; 5-aminolevulinic acid synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37]
D RD1_1219 gltX; glutamyl-tRNA synthetase, putative K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RD1_3218 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RD1_2749 hemB; delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D RD1_1283 hemC; porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D RD1_0471 hemD; uroporphyrinogen-III synthase, putative K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D RD1_1284 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D RD1_1282 hemF; coproporphyrinogen III oxidase, aerobic K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3]
D RD1_1267 hemN; oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D RD1_1696 hemN; oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D RD1_0435 conserved hypothetical protein K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-]
D RD1_0401 hemH; ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D RD1_4164 cysG; siroheme synthase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
D RD1_2964 cysG; siroheme synthase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
D RD1_3817 cobA; uroporphyrin-III C-methyltransferase, putative K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D RD1_1566 nirE; uroporphyrin-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D RD1_1571 nirH; nitrite reductase heme biosynthesis H protein, putative K22225 ahbAB; siroheme decarboxylase [EC:4.1.1.111]
D RD1_1570 nirG; nitrite reductase heme biosynthesis G K22225 ahbAB; siroheme decarboxylase [EC:4.1.1.111]
D RD1_1569 nirD; nitrite reductase heme biosynthesis D protein K22225 ahbAB; siroheme decarboxylase [EC:4.1.1.111]
D RD1_1573 nirN; nitrite reductase protein N K24867 nirN; dihydro-heme d1 dehydrogenase
D RD1_2136 ctaB; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D RD1_2728 cytochrome c oxidase assembly protein, putative K02259 COX15; heme a synthase [EC:1.17.99.9]
D RD1_1574 cbiX; CbiX protein, putative K03795 cbiX; sirohydrochlorin cobaltochelatase [EC:4.99.1.3]
D RD1_3824 cobI; precorrin-2 C20-methyltransferase K03394 cobI-cbiL; precorrin-2/cobalt-factor-2 C20-methyltransferase [EC:2.1.1.130 2.1.1.151]
D RD1_3826 cobG; precorrin-3B synthase K02229 cobG; precorrin-3B synthase [EC:1.14.13.83]
D RD1_3823 cobJ; precorrin-3B C(17)-methyltransferase K05934 cobJ; precorrin-3B C17-methyltransferase / cobalt-factor III methyltransferase [EC:2.1.1.131 2.1.1.272]
D RD1_3819 cobM; precorrin-4 C11-methyltransferase K05936 cobM; precorrin-4/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271]
D RD1_3820 conserved hypothetical protein K02189 cbiG; cobalt-precorrin 5A hydrolase [EC:3.7.1.12]
D RD1_3816 cobF; precorrin-6A synthase (deacetylating), putative K02228 cobF; precorrin-6A synthase [EC:2.1.1.152]
D RD1_3177 cobK; precorrin-6A reductase, putative K05895 cobK-cbiJ; precorrin-6A/cobalt-precorrin-6A reductase [EC:1.3.1.54 1.3.1.106]
D RD1_3822 cobK; precorrin-6A reductase K05895 cobK-cbiJ; precorrin-6A/cobalt-precorrin-6A reductase [EC:1.3.1.54 1.3.1.106]
D RD1_3821 cobl; precorrin-6Y C(5,15)-methyltransferase (decarboxylating) K00595 cobL-cbiET; precorrin-6B C5,15-methyltransferase / cobalt-precorrin-6B C5,C15-methyltransferase [EC:2.1.1.132 2.1.1.289 2.1.1.196]
D RD1_3825 cobH; precorrin-8X methylmutase K06042 cobH-cbiC; precorrin-8X/cobalt-precorrin-8 methylmutase [EC:5.4.99.61 5.4.99.60]
D RD1_3818 cobB; cobyrinic acid a,c-diamide synthase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11]
D RD1_3827 cobN; aerobic cobaltochelatase cobN subunit K02230 cobN; cobaltochelatase CobN [EC:6.6.1.2]
D RD1_3339 cobS; aerobic cobaltochelatase CobS subunit K09882 cobS; cobaltochelatase CobS [EC:6.6.1.2]
D RD1_3340 cobT; aerobic cobaltochelatase CobT subunit K09883 cobT; cobaltochelatase CobT [EC:6.6.1.2]
D RD1_1389 cob(I)alamin adenosyltransferase, putative K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D RD1_2181 cobO; cob(I)yrinic acid a,c-diamide adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D RD1_2180 cobQ; cobyric acid synthase K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10]
D RD1_1330 cobD; cobalamin biosynthesis protein CobD K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
D RD1_1331 cobC; threonine-phosphate decarboxylase, putative K02225 cobC1; cobalamin biosynthesis protein CobC
D RD1_1196 cobP; bifunctional adenosylcobalamin biosynthesis protein cobP K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62]
D RD1_1826 cobS; cobalamin 5'-phosphate synthase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26]
D RD1_1827 cobU; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21]
D RD1_0137 bchH; magnesium-chelatase, subunit H K03403 chlH; magnesium chelatase subunit H [EC:6.6.1.1]
D RD1_0123 bchD; magnesium-chelatase 60 kDa subunit K03404 chlD; magnesium chelatase subunit D [EC:6.6.1.1]
D RD1_0122 bchI; magnesium-chelatase 38 kDa subunit K03405 chlI; magnesium chelatase subunit I [EC:6.6.1.1]
D RD1_0135 bchM; magnesium protoporphyrin IX methyltransferase K03428 bchM; magnesium-protoporphyrin O-methyltransferase [EC:2.1.1.11]
D RD1_1697 bchE; magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase K04034 bchE; anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase [EC:1.21.98.3]
D RD1_0129 acsF; magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase K04035 E1.14.13.81; magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase [EC:1.14.13.81]
D RD1_3113 bchJ; bacteriochlorophyll 4-vinyl reductase, putative K04036 bchJ; divinyl protochlorophyllide a 8-vinyl-reductase [EC:1.-.-.-]
D RD1_0136 bchL; light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein K04037 chlL; light-independent protochlorophyllide reductase subunit L [EC:1.3.7.7]
D RD1_0139 bchN; light-independent protochlorophyllide reductase, N subunit K04038 chlN; light-independent protochlorophyllide reductase subunit N [EC:1.3.7.7]
D RD1_0138 bchB; light-independent protochlorophyllide reductase, B subunit K04039 chlB; light-independent protochlorophyllide reductase subunit B [EC:1.3.7.7]
D RD1_0144 bchG; bacteriochlorophyll synthase 33 kDa chain K04040 chlG; chlorophyll/bacteriochlorophyll a synthase [EC:2.5.1.62 2.5.1.133]
D RD1_0111 bchX; chlorophyllide reductase subunit X K11333 bchX; 3,8-divinyl chlorophyllide a/chlorophyllide a reductase subunit X [EC:1.3.7.14 1.3.7.15]
D RD1_0110 bchY; chlorophyllide reductase subunit Y K11334 bchY; 3,8-divinyl chlorophyllide a/chlorophyllide a reductase subunit Y [EC:1.3.7.14 1.3.7.15]
D RD1_0109 bchZ; chlorophyllide reductase subunit Z K11335 bchZ; 3,8-divinyl chlorophyllide a/chlorophyllide a reductase subunit Z [EC:1.3.7.14 1.3.7.15]
D RD1_0140 bchF; 2-vinyl bacteriochlorophyllide hydratase K11336 bchF; 3-vinyl bacteriochlorophyllide hydratase [EC:4.2.1.165]
D RD1_0112 bchC; 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase K11337 bchC; bacteriochlorophyllide a dehydrogenase [EC:1.1.1.396]
D RD1_0146 bchP; geranylgeranyl hydrogenase K10960 chlP; geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase [EC:1.3.1.83 1.3.1.111]
D RD1_1252 conserved hypothetical protein K07226 hutZ; heme oxygenase (biliverdin-IX-beta and delta-forming) [EC:1.14.99.58]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:rde00130]
D RD1_4080 ubiA; 4-hydroxybenzoate polyprenyl transferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D RD1_0392 ubiG; 3-demethylubiquinone-9 3-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
D RD1_0737 ubiG; 3-demethylubiquinone-9 3-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
D RD1_1958 2-octaprenyl-6-methoxyphenol hydroxylase, putative K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
D RD1_0036 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
D RD1_0203 ubiE; ubiquinone/menaquinone biosynthesis methyltransferase UbiE K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D RD1_1035 conserved hypothetical protein K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D RD1_1830 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:rde00900]
D RD1_0101 dxs; 1-deoxy-D-xylulose-5-phosphate synthase, putative K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D RD1_0548 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D RD1_2590 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D RD1_3402 ispE; 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, putative K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D RD1_2767 ispF; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D RD1_2825 ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D RD1_1355 ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D RD1_0201 bktB; beta-ketothiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RD1_3394 phbA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RD1_0025 thiolase, N-terminal domain K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RD1_3972 fadA; fatty acid oxidation complex beta subunit K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RD1_0147 idi; isopentyl-diphosphate delta-isomerase K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2]
D RD1_0549 ispA; geranyltranstransferase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D RD1_0114 crtE; geranylgeranyl pyrophosphate synthetase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D RD1_3401 ispB; octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D RD1_2587 uppS; undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D RD1_0146 bchP; geranylgeranyl hydrogenase K10960 chlP; geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase [EC:1.3.1.83 1.3.1.111]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis [PATH:rde00906]
D RD1_0119 crtB; phytoene synthase K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32]
D RD1_3180 conserved hypothetical protein K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32]
D RD1_0120 ctrI; phytoene dehydrogenase K10027 crtI; phytoene desaturase [EC:1.3.99.26 1.3.99.28 1.3.99.29 1.3.99.31]
D RD1_0116 crtC; hydroxyneurosporene dehydrogenase K09844 crtC; carotenoid 1,2-hydratase [EC:4.2.1.131]
D RD1_0115 crtD; methoxyneurosporene dehydrogenase K09845 crtD; 1-hydroxycarotenoid 3,4-desaturase [EC:1.3.99.27]
D RD1_0113 crtF; hydroxyneurosporene methyltransferase K09846 crtF; demethylspheroidene O-methyltransferase [EC:2.1.1.210]
D RD1_0121 crtA; spheroidene monooxygenase K09847 crtA; spheroidene monooxygenase [EC:1.14.15.9]
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation [PATH:rde00903]
D RD1_0633 ald; aldehyde dehydrogenase family protein, putative K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RD1_0660 ald; aldehyde dehydrogenase family protein, putative K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RD1_3871 monooxygenase, putative K14733 limB; limonene 1,2-monooxygenase [EC:1.14.13.107]
C 00907 Pinene, camphor and geraniol degradation [PATH:rde00907]
D RD1_3973 fadJ; fatty acid oxidation complex alpha subunit, putative K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D RD1_3295 mvaB; hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D RD1_2982 tktA; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:rde00523]
D RD1_B0017 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D RD1_B0019 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D RD1_B0020 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D RD1_B0018 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 01054 Nonribosomal peptide structures [PATH:rde01054]
D RD1_0818 aspartate racemase, probable K01779 racD; aspartate racemase [EC:5.1.1.13]
C 01053 Biosynthesis of siderophore group nonribosomal peptides
C 01055 Biosynthesis of vancomycin group antibiotics
D RD1_B0019 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids [PATH:rde00946]
D RD1_2318 bglA; beta-glucosidase A K05350 bglB; beta-glucosidase [EC:3.2.1.21]
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
D RD1_2752 acy; penicillin acylase, putative K01434 pac; penicillin G amidase [EC:3.5.1.11]
C 00332 Carbapenem biosynthesis [PATH:rde00332]
D RD1_2659 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D RD1_2658 proA; gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:rde00261]
D RD1_B0030 sat; sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D RD1_2157 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D RD1_0306 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RD1_0972 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D RD1_0744 dapA; dihydrodipicolinate synthase, putative K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D RD1_0650 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:rde00521]
D RD1_3776 glk; glucokinase, putative K00845 glk; glucokinase [EC:2.7.1.2]
D RD1_2870 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D RD1_2507 suhB; inositol-1-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D RD1_0291 inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D RD1_2209 myo-inositol-1-monophosphotase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D RD1_0217 idhA; myo-inositol dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D RD1_2308 oxidoreductase, putative K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D RD1_B0017 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D RD1_B0019 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D RD1_B0020 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D RD1_B0018 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D RD1_3776 glk; glucokinase, putative K00845 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:rde00525]
D RD1_B0017 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D RD1_B0019 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:rde00401]
D RD1_3387 tyrC; prephenate dehydrogenase K00220 tyrC; cyclohexadieny/prephenate dehydrogenase [EC:1.3.1.43 1.3.1.12]
D RD1_3892 aatA; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RD1_0935 tyrB; aromatic amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D RD1_3388 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RD1_1752 aminotransferase, putative K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D RD1_3205 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D RD1_3209 trpG; anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D RD1_3040 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D RD1_2925 fabD; malonyl CoA-acyl carrier protein transacylase, putative K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D RD1_3039 oxidoreductase, short chain dehydrogenase/reductase family K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RD1_3261 oxidoreductase, putative K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RD1_0098 linX; 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase, putative K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RD1_3996 oxidoreductase, putative K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RD1_3199 fabI-2; enoyl-(acyl-carrier-protein) reductase, putative K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D RD1_3925 fabI; enoyl-(acyl-carrier-protein) reductase, putative K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D RD1_2621 acyl carrier protein K02078 acpP; acyl carrier protein
D RD1_3038 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:rde00999]
D RD1_3916 metK; S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D RD1_0438 aroE; shikimate 5-dehydrogenase, putative K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D RD1_2318 bglA; beta-glucosidase A K05350 bglB; beta-glucosidase [EC:3.2.1.21]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:rde00362]
D RD1_3932 pcaD; 3-oxoadipate enol-lactonase, putative K01055 pcaD; 3-oxoadipate enol-lactonase [EC:3.1.1.24]
D RD1_1131 tautomerase, putative K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D RD1_3775 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit K00448 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3]
D RD1_3774 pcaH; protocatechuate 3,4-dioxygenase, beta subunit K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3]
D RD1_3935 pcaB; 3-carboxy-cis,cis-muconate cycloisomerase, putative K01857 pcaB; 3-carboxy-cis,cis-muconate cycloisomerase [EC:5.5.1.2]
D RD1_3773 pcaC; 4-carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
D RD1_3274 carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
D RD1_2336 pobA; p-hydroxybenzoate hydroxylase K00481 pobA; p-hydroxybenzoate 3-monooxygenase [EC:1.14.13.2]
D RD1_3973 fadJ; fatty acid oxidation complex alpha subunit, putative K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D RD1_3956 gcdH; glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D RD1_1385 bhbD; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D RD1_0201 bktB; beta-ketothiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RD1_3394 phbA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RD1_0025 thiolase, N-terminal domain K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RD1_3972 fadA; fatty acid oxidation complex beta subunit K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00627 Aminobenzoate degradation
D RD1_1908 nthA; nitrile hydratase, alpha subunit K01721 nthA; nitrile hydratase subunit alpha [EC:4.2.1.84]
D RD1_1909 nthB; nitrile hydratase, beta subunit K20807 nthB; nitrile hydratase subunit beta [EC:4.2.1.84]
C 00364 Fluorobenzoate degradation
D RD1_1908 nthA; nitrile hydratase, alpha subunit K01721 nthA; nitrile hydratase subunit alpha [EC:4.2.1.84]
D RD1_1909 nthB; nitrile hydratase, beta subunit K20807 nthB; nitrile hydratase subunit beta [EC:4.2.1.84]
C 00625 Chloroalkane and chloroalkene degradation [PATH:rde00625]
D RD1_0887 flhA; glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D RD1_3806 flhA; glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D RD1_0633 ald; aldehyde dehydrogenase family protein, putative K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RD1_0660 ald; aldehyde dehydrogenase family protein, putative K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RD1_2829 dehH1; haloacetate dehalogenase H-1, putative K01561 dehH; haloacetate dehalogenase [EC:3.8.1.3]
D RD1_3929 deh; (S)-2-haloacid dehalogenase K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
D RD1_0322 hydrolase, putative K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:rde00361]
D RD1_3929 deh; (S)-2-haloacid dehalogenase K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
D RD1_0322 hydrolase, putative K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
D RD1_2829 dehH1; haloacetate dehalogenase H-1, putative K01561 dehH; haloacetate dehalogenase [EC:3.8.1.3]
C 00623 Toluene degradation
C 00622 Xylene degradation
D RD1_1131 tautomerase, putative K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00633 Nitrotoluene degradation
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation [PATH:rde00643]
D RD1_3651 hmgA; homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5]
D RD1_3652 maiA; maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2]
D RD1_3653 fahA; fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2]
D RD1_1908 nthA; nitrile hydratase, alpha subunit K01721 nthA; nitrile hydratase subunit alpha [EC:4.2.1.84]
D RD1_1909 nthB; nitrile hydratase, beta subunit K20807 nthB; nitrile hydratase subunit beta [EC:4.2.1.84]
D RD1_0510 pct; propionate CoA-transferase K01026 pct; propionate CoA-transferase [EC:2.8.3.1]
C 00791 Atrazine degradation
D RD1_3800 ureC; urease alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D RD1_3795 ureB; urease beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D RD1_3793 ureA; urease gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
C 00930 Caprolactam degradation [PATH:rde00930]
D RD1_3716 gnl; gluconolactonase, putative K01053 gnl; gluconolactonase [EC:3.1.1.17]
D RD1_0868 gnl; gluconolactonase, putative K01053 gnl; gluconolactonase [EC:3.1.1.17]
D RD1_3973 fadJ; fatty acid oxidation complex alpha subunit, putative K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
D RD1_1131 tautomerase, putative K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00626 Naphthalene degradation [PATH:rde00626]
D RD1_0887 flhA; glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D RD1_3806 flhA; glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
D RD1_3775 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit K00448 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3]
D RD1_3774 pcaH; protocatechuate 3,4-dioxygenase, beta subunit K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3]
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:rde03020]
D RD1_4019 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D RD1_4018 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D RD1_1437 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D RD1_1358 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:rde03010]
D RD1_3911 rpsA; ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D RD1_2653 rpsB; ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D RD1_1408 rpsC; ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D RD1_3391 rpsD; ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D RD1_1428 rpsE; ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D RD1_3043 rpsF; ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D RD1_4014 rpsG; ribosomal protein S7, putative K02992 RP-S7; small subunit ribosomal protein S7
D RD1_1424 rpsH; ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D RD1_2612 rspI; ribosomal protein S9, putative K02996 RP-S9; small subunit ribosomal protein S9
D RD1_1398 rpsJ; ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D RD1_1436 rpsK; ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D RD1_4015 rpsL; ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D RD1_1435 rpsM; ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D RD1_1423 rpsN; ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D RD1_0642 rpsO; ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D RD1_1311 rpsP; ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D RD1_1419 rpsQ; ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D RD1_3044 rpsR; ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D RD1_1406 rpsS; ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D RD1_0207 rpsT; ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D RD1_1036 hypothetical protein K02970 RP-S21; small subunit ribosomal protein S21
D RD1_4022 rplA; ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D RD1_1405 rplB; ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D RD1_1399 rplC; ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D RD1_1400 rplD; ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D RD1_1422 rplE; ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D RD1_1425 rplF; ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D RD1_4020 rplL; ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D RD1_3045 rplI; ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D RD1_4021 rplJ; ribosomal protein L10, putative K02864 RP-L10; large subunit ribosomal protein L10
D RD1_4023 rplK; ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D RD1_2613 rplM; ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D RD1_1420 rplN; ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D RD1_1431 rplO; ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D RD1_1409 rplP; ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D RD1_1438 rplQ; ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D RD1_1426 rplR; ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D RD1_1305 rplS; ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D RD1_1010 rplT; ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D RD1_2665 ribosomal protein, putative K02888 RP-L21; large subunit ribosomal protein L21
D RD1_1407 rplV; ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D RD1_1401 rplW; ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D RD1_1421 rplX; ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D RD1_3898 ribosomal protein L25, Ctc-form K02897 RP-L25; large subunit ribosomal protein L25
D RD1_2663 rpmA; ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D RD1_1680 rpmB; ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D RD1_1418 ribosomal protein L29-related protein K02904 RP-L29; large subunit ribosomal protein L29
D RD1_1429 rpmD; ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D RD1_1304 rpmE; ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D RD1_3154 ribosomal protein L32-related protein K02911 RP-L32; large subunit ribosomal protein L32
D RD1_1997 ribosomal protein L33-related protein K02913 RP-L33; large subunit ribosomal protein L33
D RD1_1462 rpmH; ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D RD1_1009 rpmI; ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D RD1_0727 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RD1_0730 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RD1_0731 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:rde00970]
D RD1_0729 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RD1_0994 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RD1_1257 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RD1_2688 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RD1_0233 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RD1_1466 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RD1_2248 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D RD1_2830 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D RD1_1853 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D RD1_3440 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D RD1_2535 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RD1_3378 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RD1_2717 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RD1_1972 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RD1_1810 tRNA-His K14226 tRNA-His; tRNA His
D RD1_0728 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D RD1_2512 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RD1_2574 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RD1_0066 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RD1_2788 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RD1_1971 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RD1_0812 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D RD1_1285 tRNA-Met K14230 tRNA-Met; tRNA Met
D RD1_1148 tRNA-Met K14230 tRNA-Met; tRNA Met
D RD1_2251 tRNA-Met K14230 tRNA-Met; tRNA Met
D RD1_1844 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D RD1_3195 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RD1_3159 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RD1_2669 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RD1_3463 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RD1_3068 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RD1_2301 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RD1_1063 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RD1_2227 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RD1_4010 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D RD1_3566 pseudogene K14236 tRNA-Tyr; tRNA Tyr
D RD1_2833 tRNA-Val K14237 tRNA-Val; tRNA Val
D RD1_0717 tRNA-Val K14237 tRNA-Val; tRNA Val
D RD1_1219 gltX; glutamyl-tRNA synthetase, putative K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RD1_3218 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RD1_2000 gatA; glutamyl-tRNA(Gln) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D RD1_2406 gatA; glutamyl-tRNA(Gln) amidotransferase, subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D RD1_0035 amidase, putative K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D RD1_3333 gatB; glutamyl-tRNA(Gln) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D RD1_2001 gatC; glutamyl-tRNA(Gln) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D RD1_2709 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D RD1_1176 aspS; aspartyl-tRNA synthetase, putative K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RD1_1945 glyQ; glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D RD1_1947 glyS; glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D RD1_1883 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D RD1_2541 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D RD1_3183 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D RD1_2516 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D RD1_1339 fmt; methionyl-tRNA formyltransferase, putative K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D RD1_1754 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D RD1_0049 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RD1_2074 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D RD1_1246 lysS; lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]
D RD1_3165 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RD1_2045 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D RD1_4065 hisS; histidyl-tRNA synthetase, putative K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D RD1_1012 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D RD1_1013 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D RD1_3146 tyrS; tyrosyl-tRNA synthetase, putative K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RD1_1185 trpS; tryptophanyl-tRNA synthetase, putative K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:rde03060]
D RD1_1432 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D RD1_4025 secE; preprotein translocase, SecE subunit, putative K03073 secE; preprotein translocase subunit SecE
D RD1_1907 secG; preprotein translocase, SecG subunit, putative K03075 secG; preprotein translocase subunit SecG
D RD1_2544 secD; protein-export membrane protein SecD, putative K03072 secD; preprotein translocase subunit SecD
D RD1_2545 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D RD1_2543 yajC; preprotein translocase, YajC subunit, putative K03210 yajC; preprotein translocase subunit YajC
D RD1_1455 oxaA; inner membrane protein oxaA, putative K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RD1_0382 secA; preprotein translocase, SecA subunit, putative K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RD1_0441 secB; protein-export protein SecB, putative K03071 secB; preprotein translocase subunit SecB
D RD1_1315 signal recognition particle protein, putative K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D RD1_1932 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D RD1_3255 twin-arginine translocation protein, TatA/E family, putative K03116 tatA; sec-independent protein translocase protein TatA
D RD1_3254 tatB; Sec-independent protein translocase protein tatB-like protein, putative K03117 tatB; sec-independent protein translocase protein TatB
D RD1_3253 tatC; Sec-independent protein translocase TatC, putative K03118 tatC; sec-independent protein translocase protein TatC
D RD1_1365 lepB; signal peptidase I, putative K03100 lepB; signal peptidase I [EC:3.4.21.89]
D RD1_0656 lspA; signal peptidase II, putative K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:rde04122]
D RD1_2698 nifS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RD1_0802 nifS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RD1_0934 mst; 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D RD1_2268 conserved hypothetical protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D RD1_2599 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D RD1_4084 moaE; molybdopterin converting factor, subunit 2 K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D RD1_3307 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D RD1_4085 moaD; molybdopterin converting factor, subunit 1 K03636 moaD; sulfur-carrier protein
D RD1_0751 thiF; thiamine biosynthesis protein ThiF, putative K21147 moeZR; sulfur-carrier protein adenylyltransferase/sulfurtransferase [EC:2.7.7.80 2.7.7.- 2.8.1.11 2.8.1.-]
D RD1_3214 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D RD1_3423 moaB; molybdenum cofactor biosynthesis protein B K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75]
D RD1_0748 thiS; thiamine biosynthesis protein ThiS, putative K03154 thiS; sulfur carrier protein
C 03050 Proteasome
C 03018 RNA degradation [PATH:rde03018]
D RD1_0960 hydrolase, NUDIX family domain K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D RD1_2267 rne; ribonuclease E, putative K08300 rne; ribonuclease E [EC:3.1.26.12]
D RD1_3142 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D RD1_0637 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D RD1_3138 rhlE2; putative ATP-dependent RNA helicase, putative K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D RD1_0183 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D RD1_0988 deaD; ATP-dependent RNA helicase, DEAD/DEAH box family K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D RD1_3542 ATP-dependent DNA helicase, UvrD/REP family domain K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D RD1_0359 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D RD1_0434 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D RD1_3265 metallo-beta-lactamase family protein K12574 rnj; ribonuclease J [EC:3.1.-.-]
D RD1_0378 dnaK; chaperone protein DnaK, putative K04043 dnaK; molecular chaperone DnaK
D RD1_0772 groL; chaperonin GroEL protein, putative K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RD1_3516 groL1; 60 kDa chaperonin 1, putative K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RD1_2755 hfq; host factor-I protein K03666 hfq; host factor-I protein
D RD1_2042 ppk; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D RD1_2786 Polyphosphate kinase 2 domain, putative K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D RD1_0979 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D RD1_0409 polyA polymerase family protein, putative K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:rde03030]
D RD1_1111 exonuclease, putative K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RD1_0440 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RD1_4067 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RD1_1047 dnaX; DNA polymerase III, tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RD1_3467 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RD1_0052 conserved hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RD1_3117 DNA polymerase III, chi subunit, putative K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D RD1_0209 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RD1_3237 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D RD1_1793 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D RD1_2575 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D RD1_1924 dnaE2; DNA polymerase III alpha subunit, putative K03111 ssb; single-strand DNA-binding protein
D RD1_1351 rnhA; RNase H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D RD1_0300 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D RD1_0349 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RD1_2602 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:rde03410]
D RD1_0963 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D RD1_3211 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D RD1_0297 mutY; A/G-specific adenine glycosylase, putative K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D RD1_0204 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D RD1_3176 DNA-3-methyladenine glycosylase II, putative K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D RD1_3392 tag; DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D RD1_0216 uracil-DNA glycosylase, putative K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D RD1_3425 udgA; uracil-DNA glycosylase, C-terminal K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D RD1_0041 xth; exodeoxyribonuclease III, putative K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RD1_3171 xth; exodeoxyribonuclease III, putative K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RD1_0349 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RD1_2536 recJ; single-stranded-DNA-specific exonuclease RecJ, putative K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D RD1_2602 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:rde03420]
D RD1_2746 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D RD1_2993 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
D RD1_1254 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
D RD1_3374 DNA helicase II, putative K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RD1_0349 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RD1_2602 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:rde03430]
D RD1_0423 mutS; DNA mismatch repair protein MutS, putative K03555 mutS; DNA mismatch repair protein MutS
D RD1_0662 mutL; DNA mismatch repair protein, putative K03572 mutL; DNA mismatch repair protein MutL
D RD1_3374 DNA helicase II, putative K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RD1_1929 xseA; exodeoxyribonuclease VII, large subunit, putative K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D RD1_0550 xseB; exodeoxyribonuclease VII, small subunit, putative K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D RD1_2536 recJ; single-stranded-DNA-specific exonuclease RecJ, putative K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D RD1_2575 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D RD1_1924 dnaE2; DNA polymerase III alpha subunit, putative K03111 ssb; single-strand DNA-binding protein
D RD1_4067 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RD1_0209 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RD1_1047 dnaX; DNA polymerase III, tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RD1_0052 conserved hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RD1_3467 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RD1_1111 exonuclease, putative K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RD1_0440 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RD1_3117 DNA polymerase III, chi subunit, putative K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D RD1_2602 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:rde03440]
D RD1_2536 recJ; single-stranded-DNA-specific exonuclease RecJ, putative K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D RD1_2575 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D RD1_1924 dnaE2; DNA polymerase III alpha subunit, putative K03111 ssb; single-strand DNA-binding protein
D RD1_0210 recF; DNA replication and repair protein RecF, putative K03629 recF; DNA replication and repair protein RecF
D RD1_1369 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D RD1_1045 recR; recombination protein RecR K06187 recR; recombination protein RecR
D RD1_2710 recA; RecA protein K03553 recA; recombination protein RecA
D RD1_0349 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RD1_2089 ruvA; Holliday junction DNA helicase RuvA, putative K03550 ruvA; holliday junction DNA helicase RuvA
D RD1_2090 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D RD1_2088 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D RD1_2604 recG; ATP-dependent DNA helicase RecG, putative K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D RD1_4067 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RD1_0209 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RD1_1047 dnaX; DNA polymerase III, tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RD1_0052 conserved hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RD1_3467 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RD1_1111 exonuclease, putative K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RD1_0440 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RD1_3117 DNA polymerase III, chi subunit, putative K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D RD1_2081 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus and Lyssavirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:rde02010]
D RD1_2909 tungstate ABC transporter, tungstate-binding protein K05772 tupA; tungstate transport system substrate-binding protein
D RD1_2911 tungstate ABC transporter, permease protein K05773 tupB; tungstate transport system permease protein
D RD1_2910 tungstate ABC transporter, ATP-binding protein K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6]
D RD1_4172 nasF; nitrate transporter substrate-binding K15576 nrtA; nitrate/nitrite transport system substrate-binding protein
D RD1_4170 nasE; nitrate ABC transporter, permease component K15577 nrtB; nitrate/nitrite transport system permease protein
D RD1_4169 nasD; nitrate ABC transporter protein, ATP binding component K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4]
D RD1_0982 tauA; taurine ABC transporter, periplasmic binding protein K15551 tauA; taurine transport system substrate-binding protein
D RD1_0984 tauC; taurine ABC transporter, permease protein K15552 tauC; taurine transport system permease protein
D RD1_0983 tauB; taurine ABC transporter, ATP-binding protein K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7]
D RD1_0752 ABC transporter, periplasmic K15598 thiY; putative hydroxymethylpyrimidine transport system substrate-binding protein
D RD1_0756 ABC transporter, permease protein, putative K15599 thiX; putative hydroxymethylpyrimidine transport system permease protein
D RD1_0754 ABC transporter, ATP-binding protein, putative K15600 thiZ; putative hydroxymethylpyrimidine transport system ATP-binding protein
D RD1_2913 modA; molybdate ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D RD1_2914 modB; molybdate ABC transporter, permease protein K02018 modB; molybdate transport system permease protein
D RD1_2915 modC; molybdate ABC transporter, ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D RD1_0916 ferric iron ABC transporter, periplasmic ferric iron-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D RD1_1059 iron ABC transporter iron-binding protein, putative K02012 afuA; iron(III) transport system substrate-binding protein
D RD1_4033 iron ABC transporter, iron-binding protein, putative K02012 afuA; iron(III) transport system substrate-binding protein
D RD1_2943 periplasmic iron-binding protein, putative K02012 afuA; iron(III) transport system substrate-binding protein
D RD1_1060 iron ABC transporter, permease protein, putative K02011 afuB; iron(III) transport system permease protein
D RD1_4030 Fe-ABC transporter, permease component K02011 afuB; iron(III) transport system permease protein
D RD1_0915 ferric iron ABC transporter, permease protein K02011 afuB; iron(III) transport system permease protein
D RD1_3260 iron ABC transporter, ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D RD1_1061 fbpC; Fe-ABC transporter, ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D RD1_4031 ABC transporter, ATP-binding protein, putative K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D RD1_0557 thiamin ABC transporter, periplasmic thiamin-binding protein K02064 thiB; thiamine transport system substrate-binding protein
D RD1_0558 thiP; thiamine transport system permease protein thiP K02063 thiP; thiamine transport system permease protein
D RD1_4134 spermidine/putrescine ABC transporter, periplasmic substrate-binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein
D RD1_4128 potD; spermidine/putrescine ABC transporter, periplasmic substrate-binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein
D RD1_2369 spermidine/putrescine ABC transporter, periplasmic binding protein, putative K11069 potD; spermidine/putrescine transport system substrate-binding protein
D RD1_0280 potD; spermidine/putrescine-binding periplasmic protein, putative K11069 potD; spermidine/putrescine transport system substrate-binding protein
D RD1_4133 potI; putrescine transport system, permease protein, putative K11070 potC; spermidine/putrescine transport system permease protein
D RD1_2367 potC; spermidine/putrescine transport system, permease protein K11070 potC; spermidine/putrescine transport system permease protein
D RD1_0278 spermidine-ABC transporter, permease component, putative K11070 potC; spermidine/putrescine transport system permease protein
D RD1_4132 potB; spermidine/putrescine ABC transporter, permease protein K11071 potB; spermidine/putrescine transport system permease protein
D RD1_2368 potH; putrescine ABC transporter, permease protein K11071 potB; spermidine/putrescine transport system permease protein
D RD1_3863 ABC transporter, permease protein, putative K11071 potB; spermidine/putrescine transport system permease protein
D RD1_0279 potB; spermidine/putrescine transport system, permease protein, putative K11071 potB; spermidine/putrescine transport system permease protein
D RD1_4131 polyamine ABC transporter, ATP-binding component, putative K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D RD1_2364 spermidine/putrescine ABC transporter, ATP-binding protein, putative K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D RD1_0277 ABC transporter ATP-binding protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D RD1_0170 potF; putrescine ABC transporter, periplasmic putrescine-binding protein K11073 potF; putrescine transport system substrate-binding protein
D RD1_0167 potI; putrescine ABC transporter, permease protein K11074 potI; putrescine transport system permease protein
D RD1_0168 potH; putrescine ABC transporter, permease protein K11075 potH; putrescine transport system permease protein
D RD1_0169 potG; putrescine ABC transporter, ATP-binding protein K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D RD1_1839 glycine betaine/L-proline ABC transporter, substrate binding protein, putative K02002 proX; glycine betaine/proline transport system substrate-binding protein
D RD1_2930 opuAC; glycine betaine transporter, substrate-binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein
D RD1_0013 opuAC; glycine betaine transporter, substrate-binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein
D RD1_0015 opuAB; glycine betaine transporter, permease protein K02001 proW; glycine betaine/proline transport system permease protein
D RD1_1841 glycine betaine/L-proline transport system permease, putative K02001 proW; glycine betaine/proline transport system permease protein
D RD1_2931 opuAB; glycine betaine transporter, permease protein K02001 proW; glycine betaine/proline transport system permease protein
D RD1_0014 opuAA; glycine betaine transporter, ATP-binding protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D RD1_2932 opuAA; glycine betaine transporter, ATP-binding protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D RD1_1733 sugar ABC transporter, ATP-binding protein, putative K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D RD1_1483 sugar transport ATP-binding transport protein, putative K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D RD1_2860 lacK; Lactose ABC transporter, ATP-binding protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D RD1_3622 SN-glycerol-3-phosphate ABC transporter, ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D RD1_0517 sugar ABC transporter, ATP-binding protein, putative K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D RD1_2552 gltK; glucose ABC transporter, ATP-binding subunit K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D RD1_3636 ugpC; SN-glycerol-3-phosphate transport ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D RD1_3635 sugar ABC transporter, ATP-binding protein, putative K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D RD1_3721 algS; alginate ABC transporter, ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D RD1_3739 putative sugar ABC transporter, ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D RD1_3954 sugar ABC transporter, ATP-binding protein, putative K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D RD1_3884 sugar ABC transporter, ATP-binding protein, putative K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D RD1_3880 sugar ABC transporter, ATP-binding protein, putative K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D RD1_1729 sugar ABC transporter, periplasmic sugar-binding protein K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D RD1_1730 putative sugar ABC transporter, permease protein K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D RD1_1731 putative sugar ABC transporter, permease protein K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D RD1_1486 periplasmic sorbitol-binding protein, putative K10227 smoE; polyol transport system substrate-binding protein
D RD1_1485 sugar ABC transporter, permease protein, putative K10228 smoF; polyol transport system permease protein
D RD1_1484 sugar ABC transporter, permease protein, putative K10229 smoG; polyol transport system permease protein
D RD1_2322 aglE; alpha-glucoside transporter, periplasmic binding protein AglE K10232 aglE; alpha-glucoside transport system substrate-binding protein
D RD1_2323 aglF; alpha-glucoside transporter, permease protein AglF K10233 aglF; alpha-glucoside transport system permease protein
D RD1_2327 aglK; alpha-glucoside transporter, ATP-binding protein AglK K10235 aglK; alpha-glucoside transport system ATP-binding protein
D RD1_0939 toluene tolerance family protein, putative K07323 mlaC; phospholipid transport system substrate-binding protein
D RD1_2854 mce-related protein, putative K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D RD1_3241 conserved hypothetical protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D RD1_3243 ABC transporter, ATP-binding protein, putative K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D RD1_1647 putative sugar ABC transporter, periplasmic sugar-binding protein K07335 bmpA; basic membrane protein A and related proteins
D RD1_4074 basic membrane protein, putative K07335 bmpA; basic membrane protein A and related proteins
D RD1_1644 putative sugar ABC transporter, permease protein K23535 nupB; general nucleoside transport system permease protein
D RD1_4072 sugar ABC transporter, permease protein K23535 nupB; general nucleoside transport system permease protein
D RD1_4073 sugar ABC transporter, permease protein, putative K23536 nupC; general nucleoside transport system permease protein
D RD1_1643 putative sugar ABC transporter, permease protein K23536 nupC; general nucleoside transport system permease protein
D RD1_1645 sugar ABC transporter, ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein
D RD1_4071 sugar ABC transporter, ATP-binding protein, putative K23537 nupA; general nucleoside transport system ATP-binding protein
D RD1_0521 putative sugar ABC transporter, periplasmic sugar-binding protein K17315 gtsA; glucose/mannose transport system substrate-binding protein
D RD1_0519 sugar ABC transporter, permease protein, putative K17316 gtsB; glucose/mannose transport system permease protein
D RD1_0518 sugar ABC transporter, permease protein, putative K17317 gtsC; glucose/mannose transport system permease protein
D RD1_2553 ABC transporter, permease protein, putative K17317 gtsC; glucose/mannose transport system permease protein
D RD1_0864 ribose ABC transporter, periplasmic binding component, putative K10439 rbsB; ribose transport system substrate-binding protein
D RD1_0867 rbsC; ribose ABC transporter, permease protein K10440 rbsC; ribose transport system permease protein
D RD1_0866 ribose ABC transporter, permease protein, putative K10440 rbsC; ribose transport system permease protein
D RD1_0865 sugar ABC transporter, ATP-binding protein, putative K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D RD1_2213 sugar ABC transporter protein, putative K10552 frcB; fructose transport system substrate-binding protein
D RD1_2212 rbcS; Ribose ABC transporter, permease protein K10553 frcC; fructose transport system permease protein
D RD1_2211 sugar ABC transporter, ATP-binding protein, putative K10554 frcA; fructose transport system ATP-binding protein
D RD1_3080 sugar ABC transporter, ATP binding protein, putative K10559 rhaS; rhamnose transport system substrate-binding protein
D RD1_3078 rbsC; ribose ABC transporter, permease protein K10560 rhaP; rhamnose transport system permease protein
D RD1_3077 sugar ABC transporter permease protein K10561 rhaQ; rhamnose transport system permease protein
D RD1_3079 rbsA; ribose transport ATP-binding protein K10562 rhaT; rhamnose transport system ATP-binding protein [EC:7.5.2.-]
D RD1_4122 sugar ABC transporter, periplasmic sugar-binding protein, putative K17321 glpV; glycerol transport system substrate-binding protein
D RD1_4118 sugar ABC transporter, permease protein, putative K17322 glpP; glycerol transport system permease protein
D RD1_4117 sugar ABC transporter, permease protein, putative K17323 glpQ; glycerol transport system permease protein
D RD1_4120 ugpC; SN-glycerol-3-phosphate transport ATP-binding protein K17324 glpS; glycerol transport system ATP-binding protein
D RD1_4119 sugar ABC transporter, ATP-binding protein, putative K17325 glpT; glycerol transport system ATP-binding protein
D RD1_2939 upgB; glycerol-3-phosphate-binding periplasmic protein precursor, putative K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein
D RD1_3571 glycerol-3-phosphate ABC transporter, periplasmic binding protein K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein
D RD1_2938 ugpA; glycerol-3-phosphate ABC transporter, permease protein K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein
D RD1_3570 glycerol-3-phosphate ABC transporter, permease protein, putative K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein
D RD1_2937 ugpE; glycerol-3-phosphate ABC transporter, permease protein K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein
D RD1_3569 inner membrane component of binding-protein-dependent transport system K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein
D RD1_2935 glycerol-3-phosphate ABC transporter, permease component K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein
D RD1_2936 ugpC; SN-glycerol-3-phosphate ABC transporter, ATP-binding protein K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10]
D RD1_3572 sugar ABC transporter, ATP-binding protein, putative K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10]
D RD1_2642 pstS; phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D RD1_2643 pstC; phosphate ABC transporter, permease protein K02037 pstC; phosphate transport system permease protein
D RD1_2644 pstA; phosphate ABC transporter, permease protein K02038 pstA; phosphate transport system permease protein
D RD1_2646 pstB; phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D RD1_1057 phnD; phosphonate ABC transporter, periplasmic binding protein, putative K02044 phnD; phosphonate transport system substrate-binding protein
D RD1_2402 phosphonate ABC transporter, periplasmic phosphonate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein
D RD1_2401 phnE; phosphonate ABC transporter, permease protein K02042 phnE; phosphonate transport system permease protein
D RD1_1054 phosphonate ABC transporter, permease protein, putative K02042 phnE; phosphonate transport system permease protein
D RD1_1055 phnE; phosphonate ABC transporter, permease component K02042 phnE; phosphonate transport system permease protein
D RD1_2403 phnC; phosphonate ABC transporter, ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D RD1_1056 phnC; phosphonate ABC transporter, ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D RD1_1444 bztA; glutamate/glutamine/aspartate/asparagine-binding protein K09969 aapJ; general L-amino acid transport system substrate-binding protein
D RD1_1445 bztB; glutamate/glutamine/aspartate/asparagine transport system permease protein K09970 aapQ; general L-amino acid transport system permease protein
D RD1_1446 amino acid ABC transporter, permease protein K09971 aapM; general L-amino acid transport system permease protein
D RD1_2631 branched-chain amino acid ABC transporter, periplasmic substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D RD1_3591 branched-chain amino acid ABC transporter, periplasmic binding protein, putative K01999 livK; branched-chain amino acid transport system substrate-binding protein
D RD1_0854 branched-chain amino acid ABC transporter, periplasmic substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D RD1_1502 branched-chain amino acid ABC transporter, periplasmic binding protein, putative K01999 livK; branched-chain amino acid transport system substrate-binding protein
D RD1_0540 ABC transporter substrate binding protei K01999 livK; branched-chain amino acid transport system substrate-binding protein
D RD1_0708 conserved hypothetical protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D RD1_0631 ABC transporter, periplasmic substrate-binding protein, putative K01999 livK; branched-chain amino acid transport system substrate-binding protein
D RD1_2843 branched-chain amino acid ABC transporter, periplasmic binding protein, putative K01999 livK; branched-chain amino acid transport system substrate-binding protein
D RD1_0541 branched-chain amino acid ABC transporter, permease protein, putative K01997 livH; branched-chain amino acid transport system permease protein
D RD1_0855 branched-chain amino acid ABC transporter, permease protein K01997 livH; branched-chain amino acid transport system permease protein
D RD1_1504 branched-chain amino acid ABC transporter, permease protein K01997 livH; branched-chain amino acid transport system permease protein
D RD1_2627 branched-chain amino acid ABC transporter, permease protein, putative K01997 livH; branched-chain amino acid transport system permease protein
D RD1_0704 branched-chain amino acid ABC transporter, permease protein, putative K01997 livH; branched-chain amino acid transport system permease protein
D RD1_3589 branched-chain amino acid ABC transporter, permease protein K01997 livH; branched-chain amino acid transport system permease protein
D RD1_2844 branched-chain amino acid ABC transporter, permease protein, putative K01997 livH; branched-chain amino acid transport system permease protein
D RD1_0706 branched-chain amino acid ABC transporter, permease protein, putative K01998 livM; branched-chain amino acid transport system permease protein
D RD1_0542 branched-chain amino acid ABC transporter, permease protein, putative K01998 livM; branched-chain amino acid transport system permease protein
D RD1_0856 branched-chain amino acid ABC transporter, permease protein K01998 livM; branched-chain amino acid transport system permease protein
D RD1_1505 branched-chain amino acid ABC transporter, permease protein, putative K01998 livM; branched-chain amino acid transport system permease protein
D RD1_3590 branched-chain amino acid ABC transporter, permease protein, putative K01998 livM; branched-chain amino acid transport system permease protein
D RD1_2626 branched-chain amino acid ABC transporter, permease protein, putative K01998 livM; branched-chain amino acid transport system permease protein
D RD1_1501 branched-chain amino acid ABC transporter, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D RD1_2630 branched-chain amino acid ABC transporter, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D RD1_0543 ABC transporter subunit, putative K01995 livG; branched-chain amino acid transport system ATP-binding protein
D RD1_0703 branched-chain amino acid ABC transporter, ATP-binding protein, putative K01995 livG; branched-chain amino acid transport system ATP-binding protein
D RD1_0858 branched-chain amino acid ABC transporter, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D RD1_2846 branched-chain amino acid ABC transporter, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D RD1_3587 branched-chain amino acid ABC transporter, ATP-binding protein, putative K01995 livG; branched-chain amino acid transport system ATP-binding protein
D RD1_0709 branched-chain amino acid ABC transporter, ATP-binding protein, putative K01996 livF; branched-chain amino acid transport system ATP-binding protein
D RD1_0544 ABC transporter, ATP-binding protein, putative K01996 livF; branched-chain amino acid transport system ATP-binding protein
D RD1_0859 branched-chain amino acid ABC transporter, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D RD1_1503 branched-chain amino acid ABC transporter, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D RD1_2628 branched-chain amino acid ABC transporter, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D RD1_2847 branched-chain amino acid ABC transporter, ATP-binding protein, putative K01996 livF; branched-chain amino acid transport system ATP-binding protein
D RD1_3588 branched chain amino acid ABC transporter, ATP-binding protein, putative K01996 livF; branched-chain amino acid transport system ATP-binding protein
D RD1_2166 ABC transporter, substrate-binding protein, putative K11959 urtA; urea transport system substrate-binding protein
D RD1_3596 ABC transporter, substrate-binding protein, putative K11959 urtA; urea transport system substrate-binding protein
D RD1_3598 branched-chain amino acid transport system permease component, putative K11960 urtB; urea transport system permease protein
D RD1_2165 branched-chain amino acid ABC transporter, permease protein, putative K11960 urtB; urea transport system permease protein
D RD1_3599 branched-chain amino acid ABC transporter, permease protein, putative K11961 urtC; urea transport system permease protein
D RD1_2164 branched-chain amino acid ABC transporter, permease protein, putative K11961 urtC; urea transport system permease protein
D RD1_2163 putative ABC transporter, ATP-binding component K11962 urtD; urea transport system ATP-binding protein
D RD1_3600 branched-chain amino acid ABC transport, ATP-binding protein, putative K11962 urtD; urea transport system ATP-binding protein
D RD1_2162 ABC transporter, ATP-binding protein, putative K11963 urtE; urea transport system ATP-binding protein
D RD1_3601 ABC transporter, ATP-binding protein, putative K11963 urtE; urea transport system ATP-binding protein
D RD1_1263 ABC transporter, periplasmic substrate-binding protein, putative K13893 yejA; microcin C transport system substrate-binding protein
D RD1_1264 peptide ABC transporter, permease protein, putative K13894 yejB; microcin C transport system permease protein
D RD1_1265 ABC transporter, permease protein, putative K13895 yejE; microcin C transport system permease protein
D RD1_1266 peptide ABC transporter, ATP-binding protein, putative K13896 yejF; microcin C transport system ATP-binding protein
D RD1_4004 znuA; zinc ABC transporter, periplasmic zinc-binding protein K09815 znuA; zinc transport system substrate-binding protein
D RD1_4007 znuB; zinc ABC transporter, permease protein K09816 znuB; zinc transport system permease protein
D RD1_4006 znuC; zinc ABC transporter, ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D RD1_0922 zinc/manganese/iron ABC transporter, periplasmic zinc/manganese/iron-binding protein K11707 troA; manganese/zinc/iron transport system substrate-binding protein
D RD1_0920 putative zinc/manganese/iron ABC transporter, permease protein K11708 troC; manganese/zinc/iron transport system permease protein
D RD1_0919 putative zinc/manganese/iron ABC transporter, permease protein K11709 troD; manganese/zinc/iron transport system permease protein
D RD1_0921 troB; zinc ABC transporter, ATP-binding protein K11710 troB; manganese/zinc/iron transport system ATP- binding protein [EC:7.2.2.5]
D RD1_2561 bioY; BioY family protein, putative K03523 bioY; biotin transport system substrate-specific component
D RD1_2047 lipoprotein releasing system transmembrane protein, putative K09808 lolC_E; lipoprotein-releasing system permease protein
D RD1_2048 lolD; ABC transporter, ATP-binding protein, putative K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D RD1_2549 ccmC; heme exporter protein K02195 ccmC; heme exporter protein C
D RD1_2548 ccmB; heme exporter protein ccmB, putative K02194 ccmB; heme exporter protein B
D RD1_2547 ccmA; heme ABC exporter, ATP-binding protein CcmA, putative K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D RD1_3119 membrane protein, putative K07091 lptF; lipopolysaccharide export system permease protein
D RD1_3120 permease YjgP/YjgQ family, putative K11720 lptG; lipopolysaccharide export system permease protein
D RD1_0371 ABC transporter, ATP-binding protein, putative K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D RD1_1550 nosY; nitrous oxide maturation protein NosY K19341 nosY; Cu-processing system permease protein
D RD1_1549 nosF; copper transport ATP-binding protein NosF K19340 nosF; Cu-processing system ATP-binding protein
D RD1_1600 cell division permease, putative K09811 ftsX; cell division transport system permease protein
D RD1_1599 ftsE; cell division ATP-binding protein, putative K09812 ftsE; cell division transport system ATP-binding protein
D RD1_1749 efflux ABC transporter, transmembrane ATP-binding protein, putative K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D RD1_1775 ABC transporter, ATP-binding protein, putative K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter
D RD1_0408 ABC transporter, transmembrane ATP-binding protein K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump
D RD1_1124 toxin secretion ABC transporter, ATP-binding component, putative K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D RD1_3725 toxin secretion ABC transporter, ATP binding protein, putative K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D RD1_3726 toxin secretion ABC transporter, ATP binding component, putative K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D RD1_0594 ABC transporter, ATP-binding permease protein, putative K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D RD1_0593 putative cyclosin secreting ABC transporter, ATP binding protein K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D RD1_1720 prsD; type I secretion system ATPase K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D RD1_B0013 ABC transporter, putative K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
C 02060 Phosphotransferase system (PTS) [PATH:rde02060]
D RD1_1383 ptsH; phosphocarrier protein Hpr K02784 ptsH; phosphocarrier protein HPr
D RD1_1382 PTS system IIA component, putative K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D RD1_2158 ptsP; phosphoenolpyruvate-protein phosphotransferase, putative K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D RD1_0373 ptsN; nitrogen regulatory IIA protein K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
C 03070 Bacterial secretion system [PATH:rde03070]
D RD1_1742 type I secretion outer membrane protein, TolC family, putative K12340 tolC; outer membrane protein
D RD1_2544 secD; protein-export membrane protein SecD, putative K03072 secD; preprotein translocase subunit SecD
D RD1_2545 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D RD1_4025 secE; preprotein translocase, SecE subunit, putative K03073 secE; preprotein translocase subunit SecE
D RD1_1907 secG; preprotein translocase, SecG subunit, putative K03075 secG; preprotein translocase subunit SecG
D RD1_1432 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D RD1_2543 yajC; preprotein translocase, YajC subunit, putative K03210 yajC; preprotein translocase subunit YajC
D RD1_1455 oxaA; inner membrane protein oxaA, putative K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RD1_0382 secA; preprotein translocase, SecA subunit, putative K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RD1_1932 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D RD1_0441 secB; protein-export protein SecB, putative K03071 secB; preprotein translocase subunit SecB
D RD1_1315 signal recognition particle protein, putative K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D RD1_3255 twin-arginine translocation protein, TatA/E family, putative K03116 tatA; sec-independent protein translocase protein TatA
D RD1_3254 tatB; Sec-independent protein translocase protein tatB-like protein, putative K03117 tatB; sec-independent protein translocase protein TatB
D RD1_3253 tatC; Sec-independent protein translocase TatC, putative K03118 tatC; sec-independent protein translocase protein TatC
D RD1_A0016 hypothetical protein K03197 virB2; type IV secretion system protein VirB2
D RD1_A0015 type IV secretion system protein, putative K03198 virB3; type IV secretion system protein VirB3
D RD1_A0013 RC163, putative K03200 virB5; type IV secretion system protein VirB5
D RD1_A0009 putative VirB9 protein K03204 virB9; type IV secretion system protein VirB9
D RD1_A0011 putative conjugal transfer protein K03201 virB6; type IV secretion system protein VirB6
D RD1_A0010 VirB8 protein K03203 virB8; type IV secretion system protein VirB8
D RD1_A0008 putative VirB10 protein K03195 virB10; type IV secretion system protein VirB10
D RD1_A0014 virB4; VirB4 protein, putative K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8]
D RD1_A0007 virB11; type IV secretory pathway, VirB11 component, putative K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8]
D RD1_C0002 virD; virD4 protein, putative K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D RD1_A0114 virD4 protein, putative K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D RD1_1024 conserved hypothetical protein K11912 ppkA; serine/threonine-protein kinase PpkA [EC:2.7.11.1]
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:rde02020]
D RD1_2641 phoR; phosphate regulon sensor protein, putative K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D RD1_2648 phoB; phosphate regulon transcriptional regulatory protein PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D RD1_2642 pstS; phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D RD1_2250 sensor histidine kinase, putative K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D RD1_0551 petR; DNA-binding response regulator PetR, putative K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D RD1_1923 degP; serine protease DO-like precursor, putative K04771 degP; serine protease Do [EC:3.4.21.107]
D RD1_0160 hypothetical protein K02406 fliC; flagellin
D RD1_0273 motA; chemotaxis MotA protein K02556 motA; chemotaxis protein MotA
D RD1_3666 torS; sensor protein TorS K07647 torS; two-component system, OmpR family, sensor histidine kinase TorS [EC:2.7.13.3]
D RD1_3665 torR; response regulator TorR, putative K07772 torR; two-component system, OmpR family, torCAD operon response regulator TorR
D RD1_2944 two-component sensor protein, putative K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
D RD1_2945 tctD; DNA-binding response regulator, putative K07774 tctD; two-component system, OmpR family, response regulator TctD
D RD1_2948 conserved hypothetical protein K07793 tctA; putative tricarboxylic transport membrane protein
D RD1_1865 integral membrane protein, putative K07793 tctA; putative tricarboxylic transport membrane protein
D RD1_2200 integral membrane protein, putative K07793 tctA; putative tricarboxylic transport membrane protein
D RD1_2922 integral membrane protein, putative K07793 tctA; putative tricarboxylic transport membrane protein
D RD1_2947 membrane protein, putative K07794 tctB; putative tricarboxylic transport membrane protein
D RD1_2201 conserved hypothetical protein K07794 tctB; putative tricarboxylic transport membrane protein
D RD1_2946 conserved hypothetical protein K07795 tctC; putative tricarboxylic transport membrane protein
D RD1_2202 conserved hypothetical protein K07795 tctC; putative tricarboxylic transport membrane protein
D RD1_2920 conserved hypothetical protein K07795 tctC; putative tricarboxylic transport membrane protein
D RD1_1867 exported protein, putative K07795 tctC; putative tricarboxylic transport membrane protein
D RD1_2728 cytochrome c oxidase assembly protein, putative K02259 COX15; heme a synthase [EC:1.17.99.9]
D RD1_0208 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D RD1_1378 chvG; sensor histidine kinase ChvG, putative K14980 chvG; two-component system, OmpR family, sensor histidine kinase ChvG [EC:2.7.13.3]
D RD1_1377 chvI; DNA-binding response regulator ChvI, putative K14981 chvI; two-component system, OmpR family, response regulator ChvI
D RD1_2811 degU; transcription regulatory protein degU, putative K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL
D RD1_2442 narG; nitrate reductase, alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D RD1_2443 narH; nitrate reductase, beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D RD1_2445 narI; nitrate reductase, gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-]
D RD1_2444 narJ; nitrate reductase, delta subunit K00373 narJ; nitrate reductase molybdenum cofactor assembly chaperone NarJ/NarW
D RD1_0987 fatty acid desaturase, putative K10255 FAD6; acyl-lipid omega-6 desaturase (Delta-12 desaturase) [EC:1.14.19.23 1.14.19.45]
D RD1_2122 pilus assembly domain protein K02279 cpaB; pilus assembly protein CpaB
D RD1_2120 type II/III secretion system protein, putative K02280 cpaC; pilus assembly protein CpaC
D RD1_2117 conserved hypothetical protein K02282 cpaE; pilus assembly protein CpaE
D RD1_2116 type II/IV secretion system protein, putative K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D RD1_2115 type II secretion system protein, putative K12510 tadB; tight adherence protein B
D RD1_2113 type II/IV secretion system protein, TadC subfamily, putative K12511 tadC; tight adherence protein C
D RD1_1188 glnD; protein-P-II uridylyltransferase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D RD1_2570 glnB; Nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1
D RD1_2764 ntrB; nitrogen regulation protein NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D RD1_2763 ntrC; nitrogen regulation protein K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D RD1_1497 glutamine synthetase, putative K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RD1_1894 glutamine synthetase, putative K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RD1_1892 glutamine synthetase, putative K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RD1_2173 ipuC; gamma-glutamylisopropylamide synthetase, putative K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RD1_2569 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RD1_2762 ntrY; nitrogen regulation protein ntrY, putative K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D RD1_2761 ntrX; nitrogen assimilation regulatory protein K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX
D RD1_0201 bktB; beta-ketothiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RD1_3394 phbA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RD1_0025 thiolase, N-terminal domain K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RD1_3972 fadA; fatty acid oxidation complex beta subunit K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RD1_2265 dctB; C4-dicarboxylate transport sensor protein dctB K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
D RD1_3061 cheR; chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D RD1_3107 probable regulator protein containing CheR-and CheB-like domains K13924 cheBR; two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61]
D RD1_3582 mcpA; methyl-accepting chemotaxis protein McpA K03406 mcp; methyl-accepting chemotaxis protein
D RD1_2161 mcp; methyl-accepting chemotaxis protein, putative K03406 mcp; methyl-accepting chemotaxis protein
D RD1_2513 mcpA; methyl-accepting chemotaxis protein McpA K03406 mcp; methyl-accepting chemotaxis protein
D RD1_2605 methyl-accepting chemotaxis protein, putative K03406 mcp; methyl-accepting chemotaxis protein
D RD1_3060 cheW; chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D RD1_3059 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D RD1_3058 cheY; chemotaxis protein CheY, putative K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D RD1_3062 cheY; chemotaxis response regulator CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D RD1_2244 cheB; chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D RD1_2527 pleD; diguanylate cyclase response regulator K02488 pleD; two-component system, cell cycle response regulator [EC:2.7.7.65]
D RD1_2711 sensor kinase-like protein, putative K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3]
D RD1_2657 conserved hypothetical protein K13588 chpT; histidine phosphotransferase ChpT
D RD1_2601 ctrA; transcriptional regulator CtrA K13584 ctrA; two-component system, cell cycle response regulator CtrA
D RD1_1286 dctP; C4-dicarboxylate-binding periplasmic protein K11688 dctP; C4-dicarboxylate-binding protein DctP
D RD1_2185 dctP; C4-dicarboxylate-binding periplasmic protein, putative K11688 dctP; C4-dicarboxylate-binding protein DctP
D RD1_0741 conserved hypothetical protein K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit
D RD1_0832 tauL; C4-dicarboxylate transport system, small permease protein, putative K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit
D RD1_2186 TRAP transporter, DctQ-like subunit, putative K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit
D RD1_1476 TrapT family, DctM subunit, putative K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D RD1_1049 TRAP dicarboxylate transporter, DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D RD1_1542 TRAP dicarboxylate transporter, DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D RD1_2187 TRAP transporter, DctM subunit, putative K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D RD1_0241 putative TRAP dicarboxylate family transporter, DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D RD1_4102 TRAP dicarboxylate transporter, DctM subunit, putative K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D RD1_3086 fixJ; transcriptional regulatory protein FixJ, putative K14987 fixJ; two-component system, LuxR family, response regulator FixJ
D RD1_0816 transcriptional regulator, Crp/Fnr family, putative K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D RD1_3751 transcriptional regulator, putative K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D RD1_0225 putative cyclic nucleotide-binding domain K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D RD1_2684 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2]
D RD1_0461 regA; photosynthetic apparatus regulatory protein K15012 regA; two-component system, response regulator RegA
D RD1_3544 pucA; light-harvesting protein B-800/850, alpha chain K08930 pucA; light-harvesting protein B-800-850 alpha chain
D RD1_3543 pucB; light-harvesting protein B-800/850, beta chain K08939 pucB; light-harvesting protein B-800-850 beta chain
D RD1_0103 pufM; photosynthetic reaction center M subunit K08929 pufM; photosynthetic reaction center M subunit
D RD1_0104 pufL; photosynthetic reaction center L subunit K08928 pufL; photosynthetic reaction center L subunit
D RD1_0106 pufA; light-harvesting protein B-875, alpha chain K08926 pufA; light-harvesting complex 1 alpha chain
D RD1_0107 pufB; light-harvesting protein B-875, beta chain K08927 pufB; light-harvesting complex 1 beta chain
D RD1_0133 puhA; photosynthetic reaction center H subunit K13991 puhA; photosynthetic reaction center H subunit
D RD1_0563 petA; ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D RD1_0564 petB; cytochrome b K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D RD1_0565 petC; cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D RD1_0126 cycA; cytochrome c-551 K08738 CYC; cytochrome c
D RD1_1563 cycA; cytochrome c2 K08738 CYC; cytochrome c
D RD1_1262 cycM; cytochrome c552 K08738 CYC; cytochrome c
D RD1_0889 cytochrome c family protein K08738 CYC; cytochrome c
D RD1_1518 soxE; cytochrome c2 K08738 CYC; cytochrome c
D RD1_0991 WD repeat protein K08738 CYC; cytochrome c
D RD1_1270 ccoN; cytochrome c oxidase, cbb3-type, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D RD1_1271 ccoO; cytochrome c oxidase, cbb3-type, subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D RD1_1272 ccoQ; cytochrome c oxidase, cbb3-type, subunit IV K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV
D RD1_1273 ccoP; cytochrome c oxidase, cbb3-type, subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D RD1_0793 cydA; cytochrome oxidase subunit II, putative K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D RD1_0794 cydB; cytochrome oxidase, subunit II, putative K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D RD1_1742 type I secretion outer membrane protein, TolC family, putative K12340 tolC; outer membrane protein
D RD1_3841 polysaccharide biosynthesis/export protein, putative K01991 wza; polysaccharide biosynthesis/export protein
D RD1_B0026 polysaccharide biosynthesis protein K01991 wza; polysaccharide biosynthesis/export protein
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis [PATH:rde04148]
D RD1_1416 arcA; arginase K01476 rocF; arginase [EC:3.5.3.1]
D RD1_0563 petA; ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:rde02024]
D RD1_2755 hfq; host factor-I protein K03666 hfq; host factor-I protein
D RD1_3205 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D RD1_3209 trpG; anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D RD1_2635 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D RD1_1639 tral; autoinducer synthesis protein Tral, putative K20249 raiI; acyl homoserine lactone synthase [EC:2.3.1.184]
D RD1_1638 rhlR; Transcriptional activator protein RaiR, putative K25873 raiR; LuxR family transcriptional regulator, quorum-sensing system regulator RaiR
D RD1_2410 spermidine/putrescine ABC transporter, substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D RD1_0175 ABC transporter, substrate-binding protein, putative K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D RD1_3865 polyamine ABC transporter, periplasmic binding protein, putative K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D RD1_2428 ABC transporter, substrate-binding protein, putative K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D RD1_2416 extracellular solute-binding protein, putative K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D RD1_0180 ABC transporter permease protein, putative K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D RD1_2412 ABC transporter permease protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D RD1_2430 ABC transporter, permease protein, putative K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D RD1_2407 ABC transporter, permease protein, putative K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D RD1_3862 ABC transporter, permease protein, putative K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D RD1_0179 ABC transporter, permease protein, putative K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D RD1_2408 spermidine/putrescine ABC transporter, permease protein, putative K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D RD1_2429 ABC transporter protein, permease component, putative K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D RD1_0173 polyamine ABC transporter, ATP-binding protein, putative K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D RD1_2409 potA; spermidine/putrescine ABC transporter, ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D RD1_2414 spermidine/putrescine ABC transporter, ATP-binding protein, putative K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D RD1_2427 ABC transporter, ATP-binding protein, putative K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D RD1_3864 spermidine/putrescine ABC transporter, ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D RD1_2631 branched-chain amino acid ABC transporter, periplasmic substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D RD1_3591 branched-chain amino acid ABC transporter, periplasmic binding protein, putative K01999 livK; branched-chain amino acid transport system substrate-binding protein
D RD1_0854 branched-chain amino acid ABC transporter, periplasmic substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D RD1_1502 branched-chain amino acid ABC transporter, periplasmic binding protein, putative K01999 livK; branched-chain amino acid transport system substrate-binding protein
D RD1_0540 ABC transporter substrate binding protei K01999 livK; branched-chain amino acid transport system substrate-binding protein
D RD1_0708 conserved hypothetical protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D RD1_0631 ABC transporter, periplasmic substrate-binding protein, putative K01999 livK; branched-chain amino acid transport system substrate-binding protein
D RD1_2843 branched-chain amino acid ABC transporter, periplasmic binding protein, putative K01999 livK; branched-chain amino acid transport system substrate-binding protein
D RD1_0541 branched-chain amino acid ABC transporter, permease protein, putative K01997 livH; branched-chain amino acid transport system permease protein
D RD1_0855 branched-chain amino acid ABC transporter, permease protein K01997 livH; branched-chain amino acid transport system permease protein
D RD1_1504 branched-chain amino acid ABC transporter, permease protein K01997 livH; branched-chain amino acid transport system permease protein
D RD1_2627 branched-chain amino acid ABC transporter, permease protein, putative K01997 livH; branched-chain amino acid transport system permease protein
D RD1_0704 branched-chain amino acid ABC transporter, permease protein, putative K01997 livH; branched-chain amino acid transport system permease protein
D RD1_3589 branched-chain amino acid ABC transporter, permease protein K01997 livH; branched-chain amino acid transport system permease protein
D RD1_2844 branched-chain amino acid ABC transporter, permease protein, putative K01997 livH; branched-chain amino acid transport system permease protein
D RD1_0706 branched-chain amino acid ABC transporter, permease protein, putative K01998 livM; branched-chain amino acid transport system permease protein
D RD1_0542 branched-chain amino acid ABC transporter, permease protein, putative K01998 livM; branched-chain amino acid transport system permease protein
D RD1_0856 branched-chain amino acid ABC transporter, permease protein K01998 livM; branched-chain amino acid transport system permease protein
D RD1_1505 branched-chain amino acid ABC transporter, permease protein, putative K01998 livM; branched-chain amino acid transport system permease protein
D RD1_3590 branched-chain amino acid ABC transporter, permease protein, putative K01998 livM; branched-chain amino acid transport system permease protein
D RD1_2626 branched-chain amino acid ABC transporter, permease protein, putative K01998 livM; branched-chain amino acid transport system permease protein
D RD1_1501 branched-chain amino acid ABC transporter, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D RD1_2630 branched-chain amino acid ABC transporter, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D RD1_0543 ABC transporter subunit, putative K01995 livG; branched-chain amino acid transport system ATP-binding protein
D RD1_0703 branched-chain amino acid ABC transporter, ATP-binding protein, putative K01995 livG; branched-chain amino acid transport system ATP-binding protein
D RD1_0858 branched-chain amino acid ABC transporter, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D RD1_2846 branched-chain amino acid ABC transporter, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D RD1_3587 branched-chain amino acid ABC transporter, ATP-binding protein, putative K01995 livG; branched-chain amino acid transport system ATP-binding protein
D RD1_0709 branched-chain amino acid ABC transporter, ATP-binding protein, putative K01996 livF; branched-chain amino acid transport system ATP-binding protein
D RD1_0544 ABC transporter, ATP-binding protein, putative K01996 livF; branched-chain amino acid transport system ATP-binding protein
D RD1_0859 branched-chain amino acid ABC transporter, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D RD1_1503 branched-chain amino acid ABC transporter, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D RD1_2628 branched-chain amino acid ABC transporter, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D RD1_2847 branched-chain amino acid ABC transporter, ATP-binding protein, putative K01996 livF; branched-chain amino acid transport system ATP-binding protein
D RD1_3588 branched chain amino acid ABC transporter, ATP-binding protein, putative K01996 livF; branched-chain amino acid transport system ATP-binding protein
D RD1_0080 conserved hypothetical protein K13075 ahlD; N-acyl homoserine lactone hydrolase [EC:3.1.1.81]
D RD1_3967 luxR; transcription regulator, LuxR family, putative K19731 cciR; LuxR family transcriptional regulator, quorum-sensing system regulator CciR
D RD1_1121 hypothetical protein K20276 bapA; large repetitive protein
D RD1_1585 VCBS repeat domain protein K20276 bapA; large repetitive protein
D RD1_3736 hypothetical protein K20276 bapA; large repetitive protein
D RD1_0546 fadD; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RD1_0702 putative AMP-binding enzyme K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RD1_2849 AMP-binding domain protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RD1_0816 transcriptional regulator, Crp/Fnr family, putative K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D RD1_3751 transcriptional regulator, putative K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D RD1_0225 putative cyclic nucleotide-binding domain K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D RD1_4005 zur; zinc uptake regulation protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D RD1_0043 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D RD1_1799 ribD; riboflavin biosynthesis protein ribD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D RD1_2050 conserved hypothetical protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D RD1_1101 oligopeptide ABC transporter, periplasmic binding protein, putative K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D RD1_1291 dipeptide ABC transporter, putative K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D RD1_2741 ABC transporter, periplasmic substrate-binding protein, putative K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D RD1_3314 peptide ABC transporter, periplasmic substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D RD1_0231 oligopeptide ABC transporter, periplasmic binding protein, putative K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D RD1_1979 ABC transporter, periplasmic binding protein, putative K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D RD1_2225 bacterial extracellular solute-binding proteins, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D RD1_2226 extracellular solute-binding protein, putative K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D RD1_1859 dipeptide ABC transporter, substrate-binding protein, putative K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D RD1_0390 ABC transporter, substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D RD1_2581 oligopeptide ABC transporter, permease protein, putative K02033 ABC.PE.P; peptide/nickel transport system permease protein
D RD1_1100 oligopeptide ABC transporter, permease protein, putative K02033 ABC.PE.P; peptide/nickel transport system permease protein
D RD1_3315 ABC transporter, permease protein, putative K02033 ABC.PE.P; peptide/nickel transport system permease protein
D RD1_1862 oligopeptide ABC transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D RD1_1978 ABC transporter, permease protein, putative K02033 ABC.PE.P; peptide/nickel transport system permease protein
D RD1_2224 peptide ABC transporter, permease protein, putative K02033 ABC.PE.P; peptide/nickel transport system permease protein
D RD1_2580 oligopeptide ABC transporter, permease protein, putative K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D RD1_1099 oligopeptide ABC transporter, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D RD1_3316 ABC transporter, permease protein, putative K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D RD1_1977 ABC transporter, permease protein, putative K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D RD1_2223 peptide ABC transporter, permease protein, putative K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D RD1_1863 nikC; nickel transport system permease protein nikC K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D RD1_1976 ABC transporter, ATP-binding protein, putative K02031 ddpD; peptide/nickel transport system ATP-binding protein
D RD1_2578 ABC transporter, ATP-binding protein, putative K02031 ddpD; peptide/nickel transport system ATP-binding protein
D RD1_1102 ABC transporter ATP-binding protein, putative K02031 ddpD; peptide/nickel transport system ATP-binding protein
D RD1_2222 peptide ABC transporter, ATP-binding protein, putative K02031 ddpD; peptide/nickel transport system ATP-binding protein
D RD1_1455 oxaA; inner membrane protein oxaA, putative K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RD1_4025 secE; preprotein translocase, SecE subunit, putative K03073 secE; preprotein translocase subunit SecE
D RD1_1907 secG; preprotein translocase, SecG subunit, putative K03075 secG; preprotein translocase subunit SecG
D RD1_1432 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D RD1_2543 yajC; preprotein translocase, YajC subunit, putative K03210 yajC; preprotein translocase subunit YajC
D RD1_0382 secA; preprotein translocase, SecA subunit, putative K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RD1_1932 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D RD1_0441 secB; protein-export protein SecB, putative K03071 secB; preprotein translocase subunit SecB
D RD1_1315 signal recognition particle protein, putative K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:rde02030]
D RD1_3582 mcpA; methyl-accepting chemotaxis protein McpA K03406 mcp; methyl-accepting chemotaxis protein
D RD1_2161 mcp; methyl-accepting chemotaxis protein, putative K03406 mcp; methyl-accepting chemotaxis protein
D RD1_2513 mcpA; methyl-accepting chemotaxis protein McpA K03406 mcp; methyl-accepting chemotaxis protein
D RD1_2605 methyl-accepting chemotaxis protein, putative K03406 mcp; methyl-accepting chemotaxis protein
D RD1_0864 ribose ABC transporter, periplasmic binding component, putative K10439 rbsB; ribose transport system substrate-binding protein
D RD1_3059 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D RD1_3060 cheW; chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D RD1_3058 cheY; chemotaxis protein CheY, putative K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D RD1_3062 cheY; chemotaxis response regulator CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D RD1_2244 cheB; chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D RD1_3107 probable regulator protein containing CheR-and CheB-like domains K13924 cheBR; two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61]
D RD1_2245 cheD; chemotaxis protein CheD, putative K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D RD1_3061 cheR; chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D RD1_2558 fliG; flagellar motor switch protein FliG, putative K02410 fliG; flagellar motor switch protein FliG
D RD1_2838 conserved hypothetical protein K02416 fliM; flagellar motor switch protein FliM
D RD1_0266 fliN; flagellar motor switch protein FliN, putative K02417 fliN; flagellar motor switch protein FliN
D RD1_0273 motA; chemotaxis MotA protein K02556 motA; chemotaxis protein MotA
D RD1_3382 conserved hypothetical protein K02557 motB; chemotaxis protein MotB
D RD1_0583 motB; chemotaxis protein MotB, putative K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:rde02040]
D RD1_0255 fliE; flagellar hook-basal body complex protein, putative K02408 fliE; flagellar hook-basal body complex protein FliE
D RD1_0268 fliF; flagellar M-ring protein FliF, putative K02409 fliF; flagellar M-ring protein FliF
D RD1_2558 fliG; flagellar motor switch protein FliG, putative K02410 fliG; flagellar motor switch protein FliG
D RD1_0251 fliI; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D RD1_0163 flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D RD1_0270 fliL; flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL
D RD1_0261 hypothetical protein K02415 fliL; flagellar protein FliL
D RD1_2838 conserved hypothetical protein K02416 fliM; flagellar motor switch protein FliM
D RD1_0266 fliN; flagellar motor switch protein FliN, putative K02417 fliN; flagellar motor switch protein FliN
D RD1_0265 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D RD1_0256 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D RD1_0150 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D RD1_0149 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D RD1_0151 flhB; flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D RD1_0259 flgA; flagella basal body P-ring formation protein FlgA, putative K02386 flgA; flagellar basal body P-ring formation protein FlgA
D RD1_0253 flgB; flagellar basal-body rod protein FlgB, putative K02387 flgB; flagellar basal-body rod protein FlgB
D RD1_0254 flgC; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D RD1_0164 flgD; flagellar basal-body rod modification protein, putative K02389 flgD; flagellar basal-body rod modification protein FlgD
D RD1_0581 flgE; flagellar hook protein FlgE, putative K02390 flgE; flagellar hook protein FlgE
D RD1_0257 flgF; flagellar basal-body rod protein FlgF, putative K02391 flgF; flagellar basal-body rod protein FlgF
D RD1_0258 flgG; flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D RD1_0260 flgH; flagellar L-ring protein FlgH, putative K02393 flgH; flagellar L-ring protein FlgH
D RD1_0577 flgI; flagellar P-ring protein FlgI K02394 flgI; flagellar P-ring protein FlgI
D RD1_0162 cheL; chemotactic signal-response protein, putative K02395 flgJ; peptidoglycan hydrolase FlgJ
D RD1_0580 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D RD1_0578 flgL; flagellar hook-associated protein K02397 flgL; flagellar hook-associated protein 3 FlgL
D RD1_0160 hypothetical protein K02406 fliC; flagellin
D RD1_0273 motA; chemotaxis MotA protein K02556 motA; chemotaxis protein MotA
D RD1_3382 conserved hypothetical protein K02557 motB; chemotaxis protein MotB
D RD1_0583 motB; chemotaxis protein MotB, putative K02557 motB; chemotaxis protein MotB
D RD1_1794 rpoD; RNA polymerase sigma-70 factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D RD1_0804 rpoD; RNA polymerase sigma factor, putative K03086 rpoD; RNA polymerase primary sigma factor
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D RD1_3142 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism [PATH:rde04980]
D RD1_1389 cob(I)alamin adenosyltransferase, putative K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D RD1_1679 LAO/AO transport system kinase, putative K07588 MMAA; GTPase [EC:3.6.5.-]
D RD1_2035 mutA; methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D RD1_3659 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D RD1_3660 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D RD1_2260 homocysteine S-methyltransferase, putative K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D RD1_3057 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase, putative K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:rde01501]
D RD1_0047 outer membrane porin, putative K08720 ompU; outer membrane protein OmpU
D RD1_3163 nagZ; beta-hexosaminidase, putative K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D RD1_4115 transcriptional regulator, putative K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D RD1_2534 acrE; RND efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D RD1_3422 efflux transporter, RND family, MFP subunit, putative K03585 acrA; membrane fusion protein, multidrug efflux system
D RD1_2533 acrF; RND multidrug efflux transporter protein K18138 acrB; multidrug efflux pump
D RD1_1742 type I secretion outer membrane protein, TolC family, putative K12340 tolC; outer membrane protein
D RD1_2820 mrcA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D RD1_1206 pbpA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D RD1_3366 penicillin-binding protein, putative K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:rde01502]
D RD1_3351 ddlB; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RD1_3240 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D RD1_3364 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D RD1_3363 mraY; phospho-N-acetylmuramoyl-pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D RD1_3357 UDP-N-acetylglucosamine:N-acetylmuramyl-pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:rde01503]
D RD1_3460 calcium binding hemolysin protein, putative K01406 prtC; serralysin [EC:3.4.24.40]
D RD1_2821 amiC; N-acetylmuramoyl-L-alanine amidase, putative K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D RD1_1923 degP; serine protease DO-like precursor, putative K04771 degP; serine protease Do [EC:3.4.21.107]
D RD1_2534 acrE; RND efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D RD1_3422 efflux transporter, RND family, MFP subunit, putative K03585 acrA; membrane fusion protein, multidrug efflux system
D RD1_2533 acrF; RND multidrug efflux transporter protein K18138 acrB; multidrug efflux pump
D RD1_1742 type I secretion outer membrane protein, TolC family, putative K12340 tolC; outer membrane protein
D RD1_2596 lpxA; acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:rde01000]
C 01001 Protein kinases [BR:rde01001]
D RD1_1024 conserved hypothetical protein K11912 ppkA; serine/threonine-protein kinase PpkA [EC:2.7.11.1]
D RD1_0027 rsbW; serine-protein kinase, putative K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1]
D RD1_3835 chain length determinant domain protein K16554 exoP; polysaccharide biosynthesis transport protein [EC:2.7.10.3]
D RD1_B0021 exopolysaccharide biosynthesis K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3]
D RD1_2641 phoR; phosphate regulon sensor protein, putative K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D RD1_2250 sensor histidine kinase, putative K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D RD1_3666 torS; sensor protein TorS K07647 torS; two-component system, OmpR family, sensor histidine kinase TorS [EC:2.7.13.3]
D RD1_2944 two-component sensor protein, putative K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
D RD1_1378 chvG; sensor histidine kinase ChvG, putative K14980 chvG; two-component system, OmpR family, sensor histidine kinase ChvG [EC:2.7.13.3]
D RD1_2810 degS; sensor protein degS K02480 K02480; two-component system, NarL family, sensor kinase [EC:2.7.13.3]
D RD1_2764 ntrB; nitrogen regulation protein NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D RD1_2762 ntrY; nitrogen regulation protein ntrY, putative K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D RD1_2265 dctB; C4-dicarboxylate transport sensor protein dctB K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
D RD1_3059 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D RD1_2711 sensor kinase-like protein, putative K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:rde01009]
D RD1_0465 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D RD1_3696 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D RD1_0195 serB; phosphoserine phosphatase, putative K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:rde01002]
D RD1_0656 lspA; signal peptidase II, putative K03101 lspA; signal peptidase II [EC:3.4.23.36]
D RD1_2778 GMP synthase putative K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D RD1_3323 glutamine amidotransferase, putative K07010 K07010; putative glutamine amidotransferase
D RD1_3247 amidophosphoribosyltransferase putative K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D RD1_0060 gltB; glutamate synthase, large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D RD1_3305 glmS; glucosamine--fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D RD1_1726 SIS domain protein K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D RD1_2418 glucosamine--fructose-6-phosphate aminotransferase, putative K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D RD1_3849 asnO; asparagine synthetase, putative K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D RD1_1397 protease, putative K05520 yhbO; deglycase [EC:3.5.1.124]
D RD1_0402 ErfK/YbiS/YcfS/YnhG family protein K16291 erfK; L,D-transpeptidase ErfK/SrfK
D RD1_2619 peptidoglycan binding domain protein, putative K21470 ycbB; L,D-transpeptidase YcbB
D RD1_0329 CAAX amino terminal protease family protein, putative K07052 K07052; CAAX protease family protein
D RD1_3327 pepN; aminopeptidase N, putative K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D RD1_4194 pepN; aminopeptidase, putative K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D RD1_1203 dcp; dipeptidyl carboxypeptidase, putative K01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5]
D RD1_1815 pepF; oligoendopeptidase F, putative K08602 pepF; oligoendopeptidase F [EC:3.4.24.-]
D RD1_3460 calcium binding hemolysin protein, putative K01406 prtC; serralysin [EC:3.4.24.40]
D RD1_0658 pqqE; peptidase, M16 family, putative K07263 pqqL; zinc protease [EC:3.4.24.-]
D RD1_0659 peptidase, M16 family, putative K07263 pqqL; zinc protease [EC:3.4.24.-]
D RD1_0314 pepA; leucine aminopeptidase, putative K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D RD1_3118 pepA; cytosol aminopeptidase, putative K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D RD1_2067 renal dipeptidase family protein, putative K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D RD1_0090 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D RD1_0185 dapE; putative succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D RD1_0949 map; methionine aminopeptidase, type I, putative K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D RD1_3341 metallopeptidase, family M24, putative K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D RD1_2727 cxp; thermostable carboxypeptidase, putative K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19]
D RD1_2101 ftsH; cell division protein FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D RD1_0775 htpX; heat shock protein, putative K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D RD1_2591 ecfE; Protease ecfE, putative K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D RD1_0362 mepA; murein endopeptidase K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-]
D RD1_0628 trypsin domain protein, putative K04775 ydgD; protease YdgD [EC:3.4.21.-]
D RD1_2542 trypsin domain protein, putative K04775 ydgD; protease YdgD [EC:3.4.21.-]
D RD1_1923 degP; serine protease DO-like precursor, putative K04771 degP; serine protease Do [EC:3.4.21.107]
D RD1_3465 dacC; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D RD1_1244 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D RD1_2858 clpP; Clp protease, putative K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D RD1_2950 lon; ATP-dependent protease La, putative K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D RD1_3216 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D RD1_1365 lepB; signal peptidase I, putative K03100 lepB; signal peptidase I [EC:3.4.21.89]
D RD1_0391 pip; proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D RD1_0333 ctpA; carboxyl-terminal protease family protein, putative K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D RD1_2752 acy; penicillin acylase, putative K01434 pac; penicillin G amidase [EC:3.5.1.11]
D RD1_2508 conserved hypothetical protein K07059 K07059; rhomboid family protein
D RD1_3030 phage prohead protease, putative K06904 GP4; Escherichia/Staphylococcus phage prohead protease
D RD1_0450 hslV; ATP-dependent protease hslV K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D RD1_0028 ggtA; gamma-glutamyltranspeptidase, putative K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D RD1_2179 ggtA; gamma-glutamyltranspeptidase, putative K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D RD1_3436 ggt; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D RD1_0290 pmbA; PmbA protein, putative K03592 pmbA; PmbA protein
D RD1_2133 tldD; TldD protein K03568 tldD; TldD protein
D RD1_1921 hflC; HflC protein, putative K04087 hflC; modulator of FtsH protease HflC
D RD1_1920 HflK protein, putative K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:rde01003]
D RD1_0575 glycosyl transferase, putative K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83]
D RD1_2873 glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21]
D RD1_0059 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D RD1_2820 mrcA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D RD1_1668 opgH; glucans biosynthesis glucosyltransferase H, putative K03669 mdoH; membrane glycosyltransferase [EC:2.4.1.-]
D RD1_3714 conserved hypothetical protein K13693 gpgS; glucosyl-3-phosphoglycerate synthase [EC:2.4.1.266]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:rde01005]
D RD1_2596 lpxA; acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D RD1_2598 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D RD1_3346 lpxC; UDP-3-0-acyl N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D RD1_2620 lpxD; UDP-3-O-3-hydroxymyristoyl glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D RD1_2597 conserved hypothetical protein K09949 lpxI; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D RD1_0294 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D RD1_2557 lipid A biosynthesis lauroyl acyltransferase, putative K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D RD1_3308 kdtA; 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D RD1_0293 3-deoxy-D-manno-octulosonic-acid K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D RD1_2357 conserved hypothetical protein K12976 pagL; lipid A 3-O-deacylase [EC:3.1.1.-]
D RD1_1661 kdsA; 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D RD1_0375 kdsB; 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D RD1_0368 kdsD; arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D RD1_3309 lpcC; lipopolysaccharide core biosynthesis mannosyltransferase K12989 lpcC; mannosyltransferase [EC:2.4.1.-]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:rde01011]
D RD1_1065 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D RD1_3352 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D RD1_3355 murC; UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D RD1_3361 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D RD1_3365 murE; UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D RD1_3351 ddlB; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RD1_3240 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D RD1_3228 murI; glutamate racemase, putative K01776 murI; glutamate racemase [EC:5.1.1.3]
D RD1_3363 mraY; phospho-N-acetylmuramoyl-pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D RD1_3357 UDP-N-acetylglucosamine:N-acetylmuramyl-pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D RD1_0064 uppP; undecaprenyl-diphosphatase, putative K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D RD1_B0015 PAP2 superfamily protein, putative K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D RD1_1187 mviN; virulence factor MviN-like protein K03980 murJ; putative peptidoglycan lipid II flippase
D RD1_2820 mrcA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D RD1_1206 pbpA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D RD1_3366 penicillin-binding protein, putative K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D RD1_3465 dacC; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D RD1_1244 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D RD1_0059 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D RD1_0402 ErfK/YbiS/YcfS/YnhG family protein K16291 erfK; L,D-transpeptidase ErfK/SrfK
D RD1_2619 peptidoglycan binding domain protein, putative K21470 ycbB; L,D-transpeptidase YcbB
D RD1_0362 mepA; murein endopeptidase K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-]
D RD1_0971 transglycosylase, Slt family K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D RD1_1120 peptidoglycan binding domain protein K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D RD1_0181 transglycosylase, putative K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D RD1_3035 conserved hypothetical protein K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D RD1_2821 amiC; N-acetylmuramoyl-L-alanine amidase, putative K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:rde01004]
D RD1_3040 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D RD1_2925 fabD; malonyl CoA-acyl carrier protein transacylase, putative K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D RD1_3156 fabH; 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D RD1_3924 fabB; 3-oxoacyl-(acyl-carrier-protein) synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D RD1_3036 fabF; 3-oxoacyl-(acyl carrier protein) synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D RD1_3039 oxidoreductase, short chain dehydrogenase/reductase family K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RD1_3261 oxidoreductase, putative K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RD1_0098 linX; 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase, putative K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RD1_3996 oxidoreductase, putative K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RD1_3923 fabA; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA, putative K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D RD1_2595 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D RD1_3199 fabI-2; enoyl-(acyl-carrier-protein) reductase, putative K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D RD1_3925 fabI; enoyl-(acyl-carrier-protein) reductase, putative K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D RD1_1228 putative acyl-CoA thioesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D RD1_0987 fatty acid desaturase, putative K10255 FAD6; acyl-lipid omega-6 desaturase (Delta-12 desaturase) [EC:1.14.19.23 1.14.19.45]
D RD1_2332 acsA; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RD1_1117 acsA; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RD1_3986 prpE; propionate--CoA ligase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17]
D RD1_0546 fadD; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RD1_0702 putative AMP-binding enzyme K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RD1_2849 AMP-binding domain protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RD1_1106 putative long chain fatty acid acyl-CoA ligase K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-]
D RD1_1974 lcfA; long-chain-fatty-acid--CoA ligase, putative K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-]
D RD1_1636 acyltransferase, putative K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D RD1_3155 plsX; fatty acid/phospholipid synthesis protein PlsX, putative K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D RD1_3430 conserved hypothetical protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D RD1_1601 acyltransferase, putative K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins [BR:rde01008]
D RD1_0818 aspartate racemase, probable K01779 racD; aspartate racemase [EC:5.1.1.13]
C 01006 Prenyltransferases [BR:rde01006]
D RD1_0549 ispA; geranyltranstransferase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D RD1_0114 crtE; geranylgeranyl pyrophosphate synthetase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D RD1_3401 ispB; octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D RD1_2587 uppS; undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D RD1_0119 crtB; phytoene synthase K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32]
D RD1_3180 conserved hypothetical protein K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32]
D RD1_2584 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D RD1_4080 ubiA; 4-hydroxybenzoate polyprenyl transferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D RD1_2136 ctaB; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D RD1_0144 bchG; bacteriochlorophyll synthase 33 kDa chain K04040 chlG; chlorophyll/bacteriochlorophyll a synthase [EC:2.5.1.62 2.5.1.133]
C 01007 Amino acid related enzymes [BR:rde01007]
D RD1_1246 lysS; lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]
D RD1_1219 gltX; glutamyl-tRNA synthetase, putative K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RD1_3218 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RD1_2608 glutamyl-tRNA synthetase, putative K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D RD1_3146 tyrS; tyrosyl-tRNA synthetase, putative K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RD1_1185 trpS; tryptophanyl-tRNA synthetase, putative K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D RD1_3183 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D RD1_3165 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RD1_2516 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D RD1_2074 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D RD1_1754 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D RD1_0049 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RD1_1176 aspS; aspartyl-tRNA synthetase, putative K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RD1_4065 hisS; histidyl-tRNA synthetase, putative K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D RD1_1945 glyQ; glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D RD1_1947 glyS; glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D RD1_2541 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D RD1_2045 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D RD1_1883 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D RD1_2709 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D RD1_1012 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D RD1_1013 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D RD1_3892 aatA; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RD1_0935 tyrB; aromatic amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D RD1_3185 aspC; aspartate aminotransferase K12252 aruH; arginine:pyruvate transaminase [EC:2.6.1.84]
D RD1_3388 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RD1_1752 aminotransferase, putative K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RD1_0199 kbl; 2-amino-3-ketobutyrate coenzyme A ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D RD1_0127 hemA; 5-aminolevulinic acid synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37]
D RD1_1576 hemA; 5-aminolevulinic acid synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37]
D RD1_2827 hemA; 5-aminolevulinic acid synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37]
D RD1_3778 hemA; 5-aminolevulinic acid synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37]
D RD1_1336 aminotransferase, putative K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D RD1_1676 argD; acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D RD1_0839 gabT; 4-aminobutyrate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D RD1_0172 aminotransferase, class III K12256 spuC; putrescine---pyruvate transaminase [EC:2.6.1.113]
D RD1_0981 tpa; taurine--pyruvate aminotransferase K03851 tpa; taurine-pyruvate aminotransferase [EC:2.6.1.77]
D RD1_1004 dat; D-alanine aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D RD1_0553 ilvE; branched-chain amino acid aminotransferase, putative K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RD1_1654 ilvE; branched-chain-amino-acid aminotransferase, putative K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RD1_0990 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RD1_1750 sgaA; serine--glyoxylate aminotransferase, putative K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D RD1_2892 sgaA; serine--glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D RD1_0196 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D RD1_0568 DegT/DnrJ/EryC1/StrS aminotransferase family K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:rde00194]
D RD1_2377 petF; ferredoxin K02639 petF; ferredoxin
D RD1_3532 atpC; ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D RD1_3533 atpD; ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D RD1_3534 atpG; ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D RD1_3535 atpA; ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D RD1_3536 atpH; ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D RD1_1325 atpF; ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D RD1_1324 atpX; ATP synthase F0, B' subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D RD1_1323 atpE; ATP synthase F0, C subunit-related protein K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D RD1_1322 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D RD1_1321 atpI; ATP synthase F0, subunit I K02116 atpI; ATP synthase protein I
D RD1_0104 pufL; photosynthetic reaction center L subunit K08928 pufL; photosynthetic reaction center L subunit
D RD1_0103 pufM; photosynthetic reaction center M subunit K08929 pufM; photosynthetic reaction center M subunit
D RD1_0133 puhA; photosynthetic reaction center H subunit K13991 puhA; photosynthetic reaction center H subunit
D RD1_0102 pufC; photosynthetic reaction center cytochrome c subunit K13992 pufC; photosynthetic reaction center cytochrome c subunit
D RD1_0106 pufA; light-harvesting protein B-875, alpha chain K08926 pufA; light-harvesting complex 1 alpha chain
D RD1_0107 pufB; light-harvesting protein B-875, beta chain K08927 pufB; light-harvesting complex 1 beta chain
D RD1_3544 pucA; light-harvesting protein B-800/850, alpha chain K08930 pucA; light-harvesting protein B-800-850 alpha chain
D RD1_3543 pucB; light-harvesting protein B-800/850, beta chain K08939 pucB; light-harvesting protein B-800-850 beta chain
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:rde03000]
D RD1_C0014 DNA-cytosine methyltransferase, putative K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D RD1_2582 pobR; transcriptional regulator, AraC family K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D RD1_0248 araC; transcriptional regulator, AraC family, putative K07506 K07506; AraC family transcriptional regulator
D RD1_A0100 AraC family transcriptional regulatory protein, putative K07506 K07506; AraC family transcriptional regulator
D RD1_0965 ada; ADA regulatory protein, putative K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D RD1_2634 transcriptional regulator, AraC family, putative K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
D RD1_3782 transcriptional regulator, AraC family, putative K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
D RD1_0008 araC; transcriptional regulator, AraC family, putative K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
D RD1_3397 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D RD1_1763 metR; HTH-type transcriptional regulator metR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D RD1_4146 transcriptional regulator lysR family, putative K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D RD1_2194 oxyR; oxidative stress transcription regulator, oxyR, putative K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D RD1_1837 transcriptional regulator, LysR family, putative K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D RD1_0820 transcriptional regulator, LysR family, putative K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D RD1_2885 glpR; glycerol-3-phosphate regulon repressor, putative K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D RD1_3573 deoR; transcriptional regulator, DeoR family, putative K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D RD1_2417 transcriptional regulator, DeoR family, putative K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D RD1_3807 transcriptional regulator, LacI family, putative K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RD1_3887 transcriptional regulator protein, putative K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RD1_2320 transcriptional regulator, putative K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RD1_2923 transcriptional regulator, LacI family, putative K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RD1_0234 transcriptional regulator, LacI family, putative K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D RD1_3722 transcriptional regulator, LacI family, putative K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D RD1_2395 phnF; phosphonates metabolism transcriptional regulator PhnF, putative K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D RD1_1719 hutC; histidine utilization repressor, putative K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D RD1_1727 transcriptional regulator, GntR family, putative K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D RD1_2309 putative transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D RD1_1326 pdhR; pyruvate dehydrogenase complex repressor K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D RD1_0925 gntR; transcriptional regulator, GntR family, putative K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D RD1_2283 transcriptional regulator, GntR family, putative K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D RD1_0834 transcriptional regulator, putative K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D RD1_0978 transcriptional regulator, gntR family, putative K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D RD1_2021 betI; HTH-type transcriptional regulator BetI, putative K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D RD1_3102 transcriptional regulator, TetR family, putative K09017 rutR; TetR/AcrR family transcriptional regulator
D RD1_3673 tetR-family transcriptional regulator, putative K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D RD1_2356 tetR-family transcriptional regulator, putative K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D RD1_1034 transcriptional regulator, AsnC family, putative K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D RD1_2510 putR; proline dehydrogenase transcriptional activator, putative K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D RD1_1000 transcriptional regulator, AsnC family, putative K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D RD1_1956 transcriptional regulator, AsnC family, putative K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D RD1_1955 transcriptional regulator, AsnC family, putative K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D RD1_2963 grp; Glutamate uptake regulatory protein, putative K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D RD1_3967 luxR; transcription regulator, LuxR family, putative K19731 cciR; LuxR family transcriptional regulator, quorum-sensing system regulator CciR
D RD1_1638 rhlR; Transcriptional activator protein RaiR, putative K25873 raiR; LuxR family transcriptional regulator, quorum-sensing system regulator RaiR
D RD1_1531 marR; multiple antibiotic resistance protein MarR K22296 nicR; MarR family transcriptional regulator, lower aerobic nicotinate degradation pathway regulator
D RD1_2304 hmrR; HTH-type transcriptional regulator hmrR, putative K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D RD1_3140 fur; ferric uptake regulation protein, putative K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D RD1_4005 zur; zinc uptake regulation protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D RD1_3922 transcriptional regulator, Fur family, putative K09826 irr; Fur family transcriptional regulator, iron response regulator
D RD1_2893 iclR; acetate operon repressor, putative K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D RD1_2379 transcriptional regulator, IclR family, putative K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D RD1_4103 iclR; Acetate operon repressor, putative K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D RD1_3649 transcriptional regulator, putative K05818 mhpR; IclR family transcriptional regulator, mhp operon transcriptional activator
D RD1_0816 transcriptional regulator, Crp/Fnr family, putative K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D RD1_3751 transcriptional regulator, putative K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D RD1_0225 putative cyclic nucleotide-binding domain K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D RD1_0789 cyclic nucleotide-binding protein, putative K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D RD1_1268 fnrL; transcriptional activator protein FnrL K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D RD1_2438 cyclic nucleotide-binding protein, putative K13642 ftrB; CRP/FNR family transcriptional regulator, transcriptional activator FtrB
D RD1_1553 cyclic nucleotide-binding protein K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator
D RD1_1554 hbaR; transcriptional activator, putative K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator
D RD1_2700 transcriptional regulator, putative K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D RD1_1691 rrf; transcriptional regulator, putative K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D RD1_0790 conserved hypothetical protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D RD1_3487 arsR; transcriptional regulator, ArsR family, putative K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D RD1_2397 arsC; arsenate reductase, putative K23988 arsR-arsC; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor / arsenate reductase (thioredoxin) [EC:1.20.4.4]
D RD1_2026 DNA-binding protein, putative K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator
D RD1_2203 transcriptional regulator, putative K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator
D RD1_0200 DNA-binding protein K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
D RD1_4115 transcriptional regulator, putative K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D RD1_3267 biotin--acetyl-CoA-carboxylase ligase, putative K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D RD1_3891 helix-turn-helix domain protein, putative K22300 dicA; HTH-type transcriptional regulator, cell division transcriptional repressor
D RD1_2433 transcriptional regulator, putative K07727 K07727; putative transcriptional regulator
D RD1_2509 putA; bifunctional PutA protein K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D RD1_1546 nosR; nitrous-oxide reductase regulatory protein NosR K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator
D RD1_1564 nosR; nitrous oxide reductase regulatory protein NosR K19343 nirI; NosR/NirI family transcriptional regulator, nitrite reductase regulator
D RD1_3337 bolA; BolA protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D RD1_A0072 plasmid stabilization protein, putative K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RD1_0429 parB; chromosome partitioning protein parB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RD1_A0023 RC101 K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RD1_B0047 chromosome partitioning protein, putative K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RD1_1825 transcriptional regulator, CarD family, putative K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D RD1_0425 hrcA; heat-inducible transcription repressor HrcA, putative K03705 hrcA; heat-inducible transcriptional repressor
D RD1_0753 tenA; transcriptional activator, putative K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D RD1_3613 tenA; transcriptional regulator, putative K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D RD1_0755 tenA; transcriptional regulator, putative K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D RD1_0561 transcriptional regulator, putative K07734 paiB; transcriptional regulator
D RD1_3419 conserved hypothetical protein K07735 algH; putative transcriptional regulator
D RD1_2792 dksA; dnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D RD1_1798 conserved hypothetical protein K07738 nrdR; transcriptional repressor NrdR
D RD1_3370 MraZ protein, putative K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:rde03021]
D RD1_1437 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D RD1_4019 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D RD1_4018 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D RD1_1358 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D RD1_1794 rpoD; RNA polymerase sigma-70 factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D RD1_0804 rpoD; RNA polymerase sigma factor, putative K03086 rpoD; RNA polymerase primary sigma factor
D RD1_0085 RNA polymerase sigma factor, putative K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D RD1_3999 RNA polymerase ECF-type sigma factor, putative K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D RD1_1814 rpoH; RNA polymerase sigma-32 factor K03089 rpoH; RNA polymerase sigma-32 factor
D RD1_1197 rpoH-1; RNA polymerase sigma-32 factor K03089 rpoH; RNA polymerase sigma-32 factor
D RD1_0388 nusA; transcription termination factor NusA, putative K02600 nusA; transcription termination/antitermination protein NusA
D RD1_1804 nusB; N utilization substance protein B-like protein, putative K03625 nusB; transcription antitermination protein NusB
D RD1_4024 nusG; transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D RD1_0413 response regulator K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
D RD1_0026 anti-anti-sigma factor, putative K04749 rsbV; anti-sigma B factor antagonist
D RD1_0027 rsbW; serine-protein kinase, putative K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1]
D RD1_2792 dksA; dnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D RD1_3405 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D RD1_0434 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:rde03019]
D RD1_2267 rne; ribonuclease E, putative K08300 rne; ribonuclease E [EC:3.1.26.12]
D RD1_1366 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D RD1_3265 metallo-beta-lactamase family protein K12574 rnj; ribonuclease J [EC:3.1.-.-]
D RD1_0183 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D RD1_3138 rhlE2; putative ATP-dependent RNA helicase, putative K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D RD1_0988 deaD; ATP-dependent RNA helicase, DEAD/DEAH box family K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D RD1_3542 ATP-dependent DNA helicase, UvrD/REP family domain K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D RD1_0359 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D RD1_3142 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D RD1_0637 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D RD1_0434 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D RD1_0378 dnaK; chaperone protein DnaK, putative K04043 dnaK; molecular chaperone DnaK
D RD1_0772 groL; chaperonin GroEL protein, putative K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RD1_3516 groL1; 60 kDa chaperonin 1, putative K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RD1_2755 hfq; host factor-I protein K03666 hfq; host factor-I protein
D RD1_2042 ppk; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D RD1_2786 Polyphosphate kinase 2 domain, putative K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D RD1_0979 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D RD1_0409 polyA polymerase family protein, putative K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D RD1_0960 hydrolase, NUDIX family domain K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D RD1_1380 conserved hypothetical protein K06958 rapZ; RNase adapter protein RapZ
D RD1_1678 hrpB; ATP-dependent helicase HrpB K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6]
C 03041 Spliceosome
C 03011 Ribosome [BR:rde03011]
D RD1_3911 rpsA; ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D RD1_2653 rpsB; ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D RD1_1408 rpsC; ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D RD1_3391 rpsD; ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D RD1_1428 rpsE; ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D RD1_3043 rpsF; ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D RD1_4014 rpsG; ribosomal protein S7, putative K02992 RP-S7; small subunit ribosomal protein S7
D RD1_1424 rpsH; ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D RD1_2612 rspI; ribosomal protein S9, putative K02996 RP-S9; small subunit ribosomal protein S9
D RD1_1398 rpsJ; ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D RD1_1436 rpsK; ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D RD1_4015 rpsL; ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D RD1_1435 rpsM; ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D RD1_1423 rpsN; ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D RD1_0642 rpsO; ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D RD1_1311 rpsP; ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D RD1_1419 rpsQ; ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D RD1_3044 rpsR; ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D RD1_1406 rpsS; ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D RD1_0207 rpsT; ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D RD1_1036 hypothetical protein K02970 RP-S21; small subunit ribosomal protein S21
D RD1_4022 rplA; ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D RD1_1405 rplB; ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D RD1_1399 rplC; ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D RD1_1400 rplD; ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D RD1_1422 rplE; ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D RD1_1425 rplF; ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D RD1_3045 rplI; ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D RD1_4021 rplJ; ribosomal protein L10, putative K02864 RP-L10; large subunit ribosomal protein L10
D RD1_4023 rplK; ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D RD1_4020 rplL; ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D RD1_2613 rplM; ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D RD1_1420 rplN; ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D RD1_1431 rplO; ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D RD1_1409 rplP; ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D RD1_1438 rplQ; ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D RD1_1426 rplR; ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D RD1_1305 rplS; ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D RD1_1010 rplT; ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D RD1_2665 ribosomal protein, putative K02888 RP-L21; large subunit ribosomal protein L21
D RD1_1407 rplV; ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D RD1_1401 rplW; ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D RD1_1421 rplX; ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D RD1_2663 rpmA; ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D RD1_1680 rpmB; ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D RD1_1418 ribosomal protein L29-related protein K02904 RP-L29; large subunit ribosomal protein L29
D RD1_1429 rpmD; ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D RD1_1304 rpmE; ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D RD1_3154 ribosomal protein L32-related protein K02911 RP-L32; large subunit ribosomal protein L32
D RD1_1997 ribosomal protein L33-related protein K02913 RP-L33; large subunit ribosomal protein L33
D RD1_1462 rpmH; ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D RD1_1009 rpmI; ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D RD1_3898 ribosomal protein L25, Ctc-form K02897 RP-L25; large subunit ribosomal protein L25
D RD1_0731 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RD1_0727 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RD1_0730 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:rde03009]
D RD1_1366 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D RD1_1367 era; GTP-binding protein Era K03595 era; GTPase
D RD1_2660 GTP-binding domain protein K03979 obgE; GTPase [EC:3.6.5.-]
D RD1_2792 dksA; dnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D RD1_0388 nusA; transcription termination factor NusA, putative K02600 nusA; transcription termination/antitermination protein NusA
D RD1_1804 nusB; N utilization substance protein B-like protein, putative K03625 nusB; transcription antitermination protein NusB
D RD1_4024 nusG; transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D RD1_3124 ksgA; dimethyladenosine transferase, putative K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D RD1_0653 rRNA methyltransferase RsmB K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D RD1_2712 NOL1/NOP2/sun family protein, putative K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D RD1_1280 rsmC; ribosomal RNA small subunit methyltransferase C, putative K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D RD1_0948 methyltransferase, putative K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D RD1_0431 gidB; methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D RD1_3368 mraW; S-adenosyl-methyltransferase, putative K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D RD1_1190 tetrapyrrole methylase domain protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D RD1_3565 RNA methyltransferase, TrmH family, putative K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D RD1_3052 rrmJ; ribosomal RNA large subunit methyltransferase, putative K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D RD1_0621 conserved hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D RD1_2799 conserved hypothetical protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D RD1_1904 conserved hypothetical protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D RD1_0192 conserved hypothetical protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D RD1_0406 RNA methyltransferase, putative K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D RD1_0016 rluA; ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D RD1_1992 RNA pseudouridylate synthase family protein, putative K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D RD1_1441 rluC; ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D RD1_1813 rluD; ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D RD1_2753 RNA pseudouridylate synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D RD1_1648 ribosomal-protein-alanine acetyltransferase, putative K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D RD1_2143 acetyltransferase, GNAT family K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
D RD1_2956 rimK; ribosomal protein S6 modification protein (C terminal domain) K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
D RD1_1308 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
D RD1_1659 RNA modification enzyme, MiaB-family, putative K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D RD1_2084 prmA; ribosomal protein L11 methyltransferase, putative K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D RD1_2267 rne; ribonuclease E, putative K08300 rne; ribonuclease E [EC:3.1.26.12]
D RD1_1766 conserved hypothetical protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D RD1_0988 deaD; ATP-dependent RNA helicase, DEAD/DEAH box family K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D RD1_1783 GTP-binding protein K03977 engA; GTPase
D RD1_2754 hflX; GTP-binding protein HflX, putative K03665 hflX; GTPase
D RD1_3418 Sua5/YciO/YrdC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D RD1_1359 spoT; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, putative K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D RD1_0649 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D RD1_0389 conserved hypothetical protein K09748 rimP; ribosome maturation factor RimP
D RD1_0620 iojap-like protein K09710 ybeB; ribosome-associated protein
D RD1_3919 conserved hypothetical protein K07042 ybeY; probable rRNA maturation factor
D RD1_0372 sigma-54 modulation protein, putative K05808 hpf; ribosome hibernation promoting factor
D RD1_3893 ychF; GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase
C 03016 Transfer RNA biogenesis [BR:rde03016]
D RD1_1042 ribonuclease T2 family K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19]
D RD1_1219 gltX; glutamyl-tRNA synthetase, putative K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RD1_3218 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RD1_2045 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D RD1_2074 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D RD1_0049 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RD1_2516 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D RD1_3165 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RD1_1176 aspS; aspartyl-tRNA synthetase, putative K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RD1_2709 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D RD1_1883 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D RD1_2541 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D RD1_3183 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D RD1_1754 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D RD1_4065 hisS; histidyl-tRNA synthetase, putative K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D RD1_1012 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D RD1_1013 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D RD1_3146 tyrS; tyrosyl-tRNA synthetase, putative K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RD1_1185 trpS; tryptophanyl-tRNA synthetase, putative K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D RD1_1982 D-tyrosyl-tRNA(Tyr) deacylase, putative K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D RD1_0932 HIT-like protein, putative K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D RD1_3915 trmB; tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D RD1_4214 hypothetical protein K15444 TRM9; tRNA (uracil-5-)-methyltransferase TRM9 [EC:2.1.1.229]
D RD1_2070 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D RD1_0647 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D RD1_2698 nifS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RD1_0802 nifS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RD1_3418 Sua5/YciO/YrdC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D RD1_2584 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D RD1_0433 trmE; tRNA modification GTPase TrmE, putative K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D RD1_0432 gidA; glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D RD1_0376 cysQ; 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D RD1_1459 rnpA; ribonuclease P protein component, putative K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D RD1_0426 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D RD1_2254 rnd; ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D RD1_0367 3'-5' exonuclease family protein, putative K03684 rnd; ribonuclease D [EC:3.1.13.5]
D RD1_1246 lysS; lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]
D RD1_1945 glyQ; glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D RD1_1947 glyS; glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D RD1_2608 glutamyl-tRNA synthetase, putative K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D RD1_1993 cytidine and deoxycytidylate deaminase family protein K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D RD1_2504 tRNA-dihydrouridine synthase A K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D RD1_2765 tRNA-dihydrouridine synthase K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D RD1_3921 miaB; tRNA-i(6)A37 thiotransferase enzyme MiaB, putative K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D RD1_0814 MiaB-like tRNA modifying enzyme, hypothetical K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5]
D RD1_2729 rrm2; RNA methyltransferase, TrmH family K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-]
D RD1_2610 gid; glucose-inhibited division protein, putative K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74]
D RD1_1307 trmD; tRNA (guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D RD1_0016 rluA; ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D RD1_2599 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D RD1_1457 conserved hypothetical protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D RD1_2268 conserved hypothetical protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D RD1_2960 hesB; HesB-like iron-sulfur cluster assembly protein, putative K13628 iscA; iron-sulfur cluster assembly protein
D RD1_1747 aminomethyl transferase family protein, putative K06980 ygfZ; tRNA-modifying protein YgfZ
D RD1_2998 queA; S-adenosylmethionine K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D RD1_0057 4Fe-4S binding domain protein, putative K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D RD1_2952 tgt; queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D RD1_2100 conserved hypothetical protein K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D RD1_1649 glycoprotease family protein, putative K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D RD1_0470 gcp; O-sialoglycoprotein endopeptidase, putative K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D RD1_0456 conserved hypothetical protein K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D RD1_0183 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D RD1_0637 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D RD1_A0026 conserved domain protein K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
C 03012 Translation factors [BR:rde03012]
D RD1_0386 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D RD1_2970 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D RD1_3112 yheS; ABC transporter ATP-binding protein yheS, putative K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D RD1_2652 tsf; translation elongation factor Ef-Ts K02357 tsf; elongation factor Ts
D RD1_1396 tufA; translation elongation factor Tu K02358 tuf; elongation factor Tu
D RD1_4012 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D RD1_4013 fusA; translation elongation factor G K02355 fusA; elongation factor G
D RD1_3127 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D RD1_2586 frr; ribosome recycling factor K02838 frr; ribosome recycling factor
D RD1_3126 hemK; modification methylase, HemK family, putative K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D RD1_3900 pth; peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D RD1_1685 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D RD1_1746 efp; translation elongation factor P, putative K02356 efp; elongation factor P
D RD1_2819 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
D RD1_3262 prfC; peptide chain release factor 3 K02837 prfC; peptide chain release factor 3
D RD1_0366 peptidyl-tRNA hydrolase, putative K15034 yaeJ; ribosome-associated protein
C 03110 Chaperones and folding catalysts [BR:rde03110]
D RD1_3540 clpA; ATP-dependent Clp protease, ATP-binding subunit ClpA, putative K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
D RD1_0721 clpB; ATP-dependent Clp protease, ATP-binding subunit ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D RD1_2857 clpX; ATP-dependent Clp protease, ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D RD1_0448 hslU; heat shock protein HslVU, ATPase subunit HslU, putative K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D RD1_3696 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D RD1_0378 dnaK; chaperone protein DnaK, putative K04043 dnaK; molecular chaperone DnaK
D RD1_0772 groL; chaperonin GroEL protein, putative K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RD1_3516 groL1; 60 kDa chaperonin 1, putative K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RD1_0379 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D RD1_2039 djlA; DnaJ-like protein, putative K05801 djlA; DnaJ like chaperone protein
D RD1_0411 hslO; chaperonin, 33 kDa, putative K04083 hslO; molecular chaperone Hsp33
D RD1_0424 grpE; GrpE protein HSP-70 cofactor, putative K03687 GRPE; molecular chaperone GrpE
D RD1_0629 ibpA; heat shock protein, Hsp20 family K04080 ibpA; molecular chaperone IbpA
D RD1_1823 hslR; heat shock protein, putative K04762 hslR; ribosome-associated heat shock protein Hsp15
D RD1_3517 groES; chaperonin, 10 kDa K04078 groES; chaperonin GroES
D RD1_0773 groES; chaperonin, 10 kDa K04078 groES; chaperonin GroES
D RD1_1923 degP; serine protease DO-like precursor, putative K04771 degP; serine protease Do [EC:3.4.21.107]
D RD1_2101 ftsH; cell division protein FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D RD1_1322 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D RD1_0441 secB; protein-export protein SecB, putative K03071 secB; preprotein translocase subunit SecB
D RD1_1682 conserved hypothetical protein K09796 pccA; periplasmic copper chaperone A
D RD1_3203 peptidyl-prolyl cis-trans isomerse D, putative K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D RD1_0383 PPIC-type PPIASE domain protein K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D RD1_2446 peptidyl-prolyl cis-trans isomerase, putative K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D RD1_3122 surA; peptidyl-prolyl cis-trans isomerase SurA, putative K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D RD1_0451 trxA; thioredoxin K03671 TXN; thioredoxin
D RD1_0213 thioredoxin, putative K03671 TXN; thioredoxin
D RD1_0039 trx; thioredoxin, putative K05838 ybbN; putative thioredoxin
D RD1_2354 grxC; glutaredoxin 3 K03676 grxC; glutaredoxin 3
D RD1_0396 grxC; glutaredoxin 3 K03676 grxC; glutaredoxin 3
D RD1_3671 grxC; glutaredoxin 3 K03676 grxC; glutaredoxin 3
D RD1_2979 glutaredoxin-like protein, putative K07390 grxD; monothiol glutaredoxin
D RD1_2551 cycY; thiol:disulfide interchange protein cycY, putative K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
C 04131 Membrane trafficking [BR:rde04131]
D RD1_3111 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D RD1_2270 fda; fructose-bisphosphate aldolase, class I K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D RD1_2880 gap; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D RD1_2984 gap; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D RD1_1007 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D RD1_3696 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D RD1_0361 major Facilitator Superfamily (MFS) transporter, permease component, putative K06902 UMF1; MFS transporter, UMF1 family
C 04121 Ubiquitin system [BR:rde04121]
C 03051 Proteasome [BR:rde03051]
D RD1_3696 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:rde03032]
D RD1_1351 rnhA; RNase H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D RD1_C0014 DNA-cytosine methyltransferase, putative K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D RD1_0603 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D RD1_3157 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
D RD1_3910 ihfB; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta
D RD1_0208 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D RD1_3237 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D RD1_1793 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D RD1_A0024 replication protein C K18996 repC; replication initiation protein RepC
D RD1_2575 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D RD1_1924 dnaE2; DNA polymerase III alpha subunit, putative K03111 ssb; single-strand DNA-binding protein
D RD1_4067 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RD1_0209 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RD1_3117 DNA polymerase III, chi subunit, putative K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D RD1_0052 conserved hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RD1_3467 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RD1_1111 exonuclease, putative K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RD1_0440 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RD1_1047 dnaX; DNA polymerase III, tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RD1_0300 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D RD1_0349 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RD1_2602 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D RD1_2726 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D RD1_0212 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D RD1_1393 parC; DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D RD1_2057 parE; DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D RD1_2131 topA; DNA topoisomerase I, putative K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:rde03036]
D RD1_C0014 DNA-cytosine methyltransferase, putative K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D RD1_1366 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D RD1_2270 fda; fructose-bisphosphate aldolase, class I K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D RD1_0603 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D RD1_3157 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
D RD1_3910 ihfB; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta
D RD1_0208 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D RD1_0029 conserved hypothetical protein K11940 hspQ; heat shock protein HspQ
D RD1_0909 conserved hypothetical protein K04047 dps; starvation-inducible DNA-binding protein
D RD1_A0091 dps; DNA protection during starvation protein, putative K04047 dps; starvation-inducible DNA-binding protein
D RD1_2672 conserved hypothetical protein K04047 dps; starvation-inducible DNA-binding protein
D RD1_2755 hfq; host factor-I protein K03666 hfq; host factor-I protein
D RD1_1034 transcriptional regulator, AsnC family, putative K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D RD1_2510 putR; proline dehydrogenase transcriptional activator, putative K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D RD1_1000 transcriptional regulator, AsnC family, putative K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D RD1_1956 transcriptional regulator, AsnC family, putative K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D RD1_1327 smc; chromosome segregation protein, putative K03529 smc; chromosome segregation protein
D RD1_3162 conserved hypothetical protein K05896 scpA; segregation and condensation protein A
D RD1_3161 conserved hypothetical protein K06024 scpB; segregation and condensation protein B
D RD1_A0032 transcriptional regulator (Ypuh-like), putative K06024 scpB; segregation and condensation protein B
D RD1_3349 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D RD1_1599 ftsE; cell division ATP-binding protein, putative K09812 ftsE; cell division transport system ATP-binding protein
D RD1_3366 penicillin-binding protein, putative K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D RD1_0033 ftsK; cell division protein FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D RD1_3367 conserved hypothetical protein K03586 ftsL; cell division protein FtsL
D RD1_3350 ftsQ; cell division protein FtsQ, putative K03589 ftsQ; cell division protein FtsQ
D RD1_3358 ftsW; cell division protein FtsW, putative K03588 ftsW; cell division protein FtsW
D RD1_1600 cell division permease, putative K09811 ftsX; cell division transport system permease protein
D RD1_3348 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D RD1_2980 conserved hypothetical protein K09888 zapA; cell division protein ZapA
D RD1_0326 ATPase, AFG1 family protein K06916 zapE; cell division protein ZapE
D RD1_2821 amiC; N-acetylmuramoyl-L-alanine amidase, putative K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D RD1_2534 acrE; RND efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D RD1_3422 efflux transporter, RND family, MFP subunit, putative K03585 acrA; membrane fusion protein, multidrug efflux system
D RD1_1209 mreB; rod shape-determining protein, putative K03569 mreB; rod shape-determining protein MreB and related proteins
D RD1_1208 mreC; rod shape-determining protein K03570 mreC; rod shape-determining protein MreC
D RD1_1207 mreD; MreD protein K03571 mreD; rod shape-determining protein MreD
D RD1_1205 rodA; rod shape-determining protein K05837 rodA; rod shape determining protein RodA
D RD1_0430 parA; chromosome partitioning protein ParA K03496 parA; chromosome partitioning protein
D RD1_C0016 parA; partition protein ParA K03496 parA; chromosome partitioning protein
D RD1_1299 possible chromosome partitioning protein K03496 parA; chromosome partitioning protein
D RD1_B0048 rep; putative replication protein K03496 parA; chromosome partitioning protein
D RD1_A0021 RC102 K03496 parA; chromosome partitioning protein
D RD1_A0072 plasmid stabilization protein, putative K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RD1_0429 parB; chromosome partitioning protein parB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RD1_A0023 RC101 K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RD1_B0047 chromosome partitioning protein, putative K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RD1_1393 parC; DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D RD1_2057 parE; DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D RD1_0432 gidA; glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D RD1_0431 gidB; methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D RD1_2610 gid; glucose-inhibited division protein, putative K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74]
D RD1_2078 xerC; tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC
D RD1_3091 xerD; tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD
D RD1_A0051 xerD; tyrosine recombinase K04763 xerD; integrase/recombinase XerD
D RD1_2906 conserved domain protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D RD1_3371 Mrp/NBP35 family protein, putative K03593 mrp; ATP-binding protein involved in chromosome partitioning
D RD1_1453 GTP-binding protein K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:rde03400]
D RD1_2075 ogt; methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D RD1_2859 deoxyribodipyrimidine photo-lyase, putative K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D RD1_2295 phrB; deoxyribodipyrimidine photolyase, putative K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D RD1_3211 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D RD1_0297 mutY; A/G-specific adenine glycosylase, putative K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D RD1_0963 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D RD1_0385 mutT; mutator mutT protein, putative K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RD1_0412 conserved hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RD1_3514 hydrolase, putative K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RD1_1201 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D RD1_0965 ada; ADA regulatory protein, putative K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D RD1_1213 conserved hypothetical protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
D RD1_0377 alkB; alkylated DNA repair protein K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
D RD1_0216 uracil-DNA glycosylase, putative K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D RD1_3425 udgA; uracil-DNA glycosylase, C-terminal K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D RD1_3176 DNA-3-methyladenine glycosylase II, putative K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D RD1_3392 tag; DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D RD1_0204 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D RD1_0041 xth; exodeoxyribonuclease III, putative K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RD1_3171 xth; exodeoxyribonuclease III, putative K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RD1_2536 recJ; single-stranded-DNA-specific exonuclease RecJ, putative K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D RD1_2602 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D RD1_0349 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RD1_2993 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
D RD1_1254 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
D RD1_3374 DNA helicase II, putative K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RD1_4019 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D RD1_4018 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D RD1_1437 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D RD1_1358 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D RD1_2746 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D RD1_0423 mutS; DNA mismatch repair protein MutS, putative K03555 mutS; DNA mismatch repair protein MutS
D RD1_0662 mutL; DNA mismatch repair protein, putative K03572 mutL; DNA mismatch repair protein MutL
D RD1_1929 xseA; exodeoxyribonuclease VII, large subunit, putative K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D RD1_0550 xseB; exodeoxyribonuclease VII, small subunit, putative K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D RD1_4067 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RD1_0209 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RD1_3117 DNA polymerase III, chi subunit, putative K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D RD1_0052 conserved hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RD1_3467 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RD1_1111 exonuclease, putative K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RD1_0440 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RD1_1047 dnaX; DNA polymerase III, tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RD1_2575 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D RD1_1924 dnaE2; DNA polymerase III alpha subunit, putative K03111 ssb; single-strand DNA-binding protein
D RD1_2710 recA; RecA protein K03553 recA; recombination protein RecA
D RD1_2089 ruvA; Holliday junction DNA helicase RuvA, putative K03550 ruvA; holliday junction DNA helicase RuvA
D RD1_2090 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D RD1_2088 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D RD1_2081 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D RD1_A0047 exonuclease SbcC, putative K03546 sbcC; DNA repair protein SbcC/Rad50
D RD1_A0046 exonuclease SbcD, putative K03547 sbcD; DNA repair protein SbcD/Mre11
D RD1_3245 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D RD1_0210 recF; DNA replication and repair protein RecF, putative K03629 recF; DNA replication and repair protein RecF
D RD1_2604 recG; ATP-dependent DNA helicase RecG, putative K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D RD1_1369 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D RD1_1045 recR; recombination protein RecR K06187 recR; recombination protein RecR
D RD1_3344 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D RD1_0452 ATP-dependent DNA nuclease, putative K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
D RD1_2625 conserved hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
D RD1_2726 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D RD1_0212 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D RD1_2131 topA; DNA topoisomerase I, putative K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D RD1_0603 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D RD1_3157 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
D RD1_3910 ihfB; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta
D RD1_3542 ATP-dependent DNA helicase, UvrD/REP family domain K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D RD1_0359 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D RD1_0719 dinB; DNA polymerase IV, putative K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D RD1_3216 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D RD1_2519 conserved hypothetical protein K14160 imuA; protein ImuA
D RD1_0317 conserved hypothetical protein K14161 imuB; protein ImuB
D RD1_0336 dnaE; DNA polymerase III, alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D RD1_2487 helD; helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4]
D RD1_2108 ATP-dependent helicase, DEAD/DEAH box family K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D RD1_A0037 ATP-dependent helicase, putative K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D RD1_4061 ribonucleotide reductase, putative K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RD1_3193 nrdJ; ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:rde03029]
D RD1_0564 petB; cytochrome b K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D RD1_0386 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D RD1_2970 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D RD1_2652 tsf; translation elongation factor Ef-Ts K02357 tsf; elongation factor Ts
D RD1_1396 tufA; translation elongation factor Tu K02358 tuf; elongation factor Tu
D RD1_4012 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D RD1_4013 fusA; translation elongation factor G K02355 fusA; elongation factor G
D RD1_1822 helicase, putative K17675 SUPV3L1; ATP-dependent RNA helicase SUPV3L1/SUV3 [EC:5.6.2.6]
D RD1_1367 era; GTP-binding protein Era K03595 era; GTPase
D RD1_3146 tyrS; tyrosyl-tRNA synthetase, putative K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RD1_0049 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RD1_1176 aspS; aspartyl-tRNA synthetase, putative K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RD1_3165 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RD1_2000 gatA; glutamyl-tRNA(Gln) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D RD1_2406 gatA; glutamyl-tRNA(Gln) amidotransferase, subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D RD1_0035 amidase, putative K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D RD1_3333 gatB; glutamyl-tRNA(Gln) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D RD1_2001 gatC; glutamyl-tRNA(Gln) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D RD1_2575 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D RD1_1924 dnaE2; DNA polymerase III alpha subunit, putative K03111 ssb; single-strand DNA-binding protein
D RD1_2593 outer membrane protein, putative K07277 SAM50; outer membrane protein insertion porin family
D RD1_0378 dnaK; chaperone protein DnaK, putative K04043 dnaK; molecular chaperone DnaK
D RD1_0424 grpE; GrpE protein HSP-70 cofactor, putative K03687 GRPE; molecular chaperone GrpE
D RD1_0772 groL; chaperonin GroEL protein, putative K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RD1_3516 groL1; 60 kDa chaperonin 1, putative K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RD1_3517 groES; chaperonin, 10 kDa K04078 groES; chaperonin GroES
D RD1_0773 groES; chaperonin, 10 kDa K04078 groES; chaperonin GroES
D RD1_0379 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D RD1_2698 nifS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RD1_0802 nifS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RD1_2979 glutaredoxin-like protein, putative K07390 grxD; monothiol glutaredoxin
D RD1_3502 hypothetical membrane protein K18164 NDUFAF7; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 7
D RD1_2906 conserved domain protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D RD1_3371 Mrp/NBP35 family protein, putative K03593 mrp; ATP-binding protein involved in chromosome partitioning
D RD1_2136 ctaB; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D RD1_2138 ctaG; cytochrome c oxidase assembly protein CtaG K02258 COX11; cytochrome c oxidase assembly protein subunit 11
D RD1_2728 cytochrome c oxidase assembly protein, putative K02259 COX15; heme a synthase [EC:1.17.99.9]
D RD1_1455 oxaA; inner membrane protein oxaA, putative K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RD1_2140 surF; SURF1 family protein, putative K14998 SURF1; surfeit locus 1 family protein
D RD1_0460 senC; SenC protein K07152 SCO1; protein SCO1
D RD1_3696 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:rde02000]
D RD1_1749 efflux ABC transporter, transmembrane ATP-binding protein, putative K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D RD1_1775 ABC transporter, ATP-binding protein, putative K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter
D RD1_0408 ABC transporter, transmembrane ATP-binding protein K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump
D RD1_1973 ABC transporter, ATP-binding protein, putative K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D RD1_3852 spaT; subtilin transport ATP-binding protein, putative K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D RD1_0407 ABC transporter, transmembrane ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D RD1_1124 toxin secretion ABC transporter, ATP-binding component, putative K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D RD1_3725 toxin secretion ABC transporter, ATP binding protein, putative K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D RD1_3726 toxin secretion ABC transporter, ATP binding component, putative K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D RD1_0594 ABC transporter, ATP-binding permease protein, putative K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D RD1_0593 putative cyclosin secreting ABC transporter, ATP binding protein K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D RD1_1720 prsD; type I secretion system ATPase K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D RD1_B0013 ABC transporter, putative K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D RD1_3149 ABC transporter, ATP-binding protein, putative K15738 uup; ABC transport system ATP-binding/permease protein
D RD1_2913 modA; molybdate ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D RD1_2914 modB; molybdate ABC transporter, permease protein K02018 modB; molybdate transport system permease protein
D RD1_2915 modC; molybdate ABC transporter, ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D RD1_2909 tungstate ABC transporter, tungstate-binding protein K05772 tupA; tungstate transport system substrate-binding protein
D RD1_2911 tungstate ABC transporter, permease protein K05773 tupB; tungstate transport system permease protein
D RD1_2910 tungstate ABC transporter, ATP-binding protein K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6]
D RD1_4172 nasF; nitrate transporter substrate-binding K15576 nrtA; nitrate/nitrite transport system substrate-binding protein
D RD1_4170 nasE; nitrate ABC transporter, permease component K15577 nrtB; nitrate/nitrite transport system permease protein
D RD1_4169 nasD; nitrate ABC transporter protein, ATP binding component K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4]
D RD1_0982 tauA; taurine ABC transporter, periplasmic binding protein K15551 tauA; taurine transport system substrate-binding protein
D RD1_0984 tauC; taurine ABC transporter, permease protein K15552 tauC; taurine transport system permease protein
D RD1_0983 tauB; taurine ABC transporter, ATP-binding protein K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7]
D RD1_0916 ferric iron ABC transporter, periplasmic ferric iron-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D RD1_1059 iron ABC transporter iron-binding protein, putative K02012 afuA; iron(III) transport system substrate-binding protein
D RD1_4033 iron ABC transporter, iron-binding protein, putative K02012 afuA; iron(III) transport system substrate-binding protein
D RD1_2943 periplasmic iron-binding protein, putative K02012 afuA; iron(III) transport system substrate-binding protein
D RD1_1060 iron ABC transporter, permease protein, putative K02011 afuB; iron(III) transport system permease protein
D RD1_4030 Fe-ABC transporter, permease component K02011 afuB; iron(III) transport system permease protein
D RD1_0915 ferric iron ABC transporter, permease protein K02011 afuB; iron(III) transport system permease protein
D RD1_3260 iron ABC transporter, ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D RD1_1061 fbpC; Fe-ABC transporter, ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D RD1_4031 ABC transporter, ATP-binding protein, putative K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D RD1_0557 thiamin ABC transporter, periplasmic thiamin-binding protein K02064 thiB; thiamine transport system substrate-binding protein
D RD1_0558 thiP; thiamine transport system permease protein thiP K02063 thiP; thiamine transport system permease protein
D RD1_4134 spermidine/putrescine ABC transporter, periplasmic substrate-binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein
D RD1_4128 potD; spermidine/putrescine ABC transporter, periplasmic substrate-binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein
D RD1_2369 spermidine/putrescine ABC transporter, periplasmic binding protein, putative K11069 potD; spermidine/putrescine transport system substrate-binding protein
D RD1_0280 potD; spermidine/putrescine-binding periplasmic protein, putative K11069 potD; spermidine/putrescine transport system substrate-binding protein
D RD1_4133 potI; putrescine transport system, permease protein, putative K11070 potC; spermidine/putrescine transport system permease protein
D RD1_2367 potC; spermidine/putrescine transport system, permease protein K11070 potC; spermidine/putrescine transport system permease protein
D RD1_0278 spermidine-ABC transporter, permease component, putative K11070 potC; spermidine/putrescine transport system permease protein
D RD1_4132 potB; spermidine/putrescine ABC transporter, permease protein K11071 potB; spermidine/putrescine transport system permease protein
D RD1_2368 potH; putrescine ABC transporter, permease protein K11071 potB; spermidine/putrescine transport system permease protein
D RD1_3863 ABC transporter, permease protein, putative K11071 potB; spermidine/putrescine transport system permease protein
D RD1_0279 potB; spermidine/putrescine transport system, permease protein, putative K11071 potB; spermidine/putrescine transport system permease protein
D RD1_4131 polyamine ABC transporter, ATP-binding component, putative K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D RD1_2364 spermidine/putrescine ABC transporter, ATP-binding protein, putative K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D RD1_0277 ABC transporter ATP-binding protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D RD1_0170 potF; putrescine ABC transporter, periplasmic putrescine-binding protein K11073 potF; putrescine transport system substrate-binding protein
D RD1_0167 potI; putrescine ABC transporter, permease protein K11074 potI; putrescine transport system permease protein
D RD1_0168 potH; putrescine ABC transporter, permease protein K11075 potH; putrescine transport system permease protein
D RD1_0169 potG; putrescine ABC transporter, ATP-binding protein K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D RD1_2410 spermidine/putrescine ABC transporter, substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D RD1_0175 ABC transporter, substrate-binding protein, putative K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D RD1_3865 polyamine ABC transporter, periplasmic binding protein, putative K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D RD1_2428 ABC transporter, substrate-binding protein, putative K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D RD1_2416 extracellular solute-binding protein, putative K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D RD1_0180 ABC transporter permease protein, putative K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D RD1_2412 ABC transporter permease protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D RD1_2430 ABC transporter, permease protein, putative K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D RD1_2407 ABC transporter, permease protein, putative K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D RD1_3862 ABC transporter, permease protein, putative K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D RD1_0179 ABC transporter, permease protein, putative K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D RD1_2408 spermidine/putrescine ABC transporter, permease protein, putative K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D RD1_2429 ABC transporter protein, permease component, putative K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D RD1_0173 polyamine ABC transporter, ATP-binding protein, putative K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D RD1_2409 potA; spermidine/putrescine ABC transporter, ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D RD1_2414 spermidine/putrescine ABC transporter, ATP-binding protein, putative K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D RD1_2427 ABC transporter, ATP-binding protein, putative K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D RD1_3864 spermidine/putrescine ABC transporter, ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D RD1_1839 glycine betaine/L-proline ABC transporter, substrate binding protein, putative K02002 proX; glycine betaine/proline transport system substrate-binding protein
D RD1_2930 opuAC; glycine betaine transporter, substrate-binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein
D RD1_0013 opuAC; glycine betaine transporter, substrate-binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein
D RD1_0015 opuAB; glycine betaine transporter, permease protein K02001 proW; glycine betaine/proline transport system permease protein
D RD1_1841 glycine betaine/L-proline transport system permease, putative K02001 proW; glycine betaine/proline transport system permease protein
D RD1_2931 opuAB; glycine betaine transporter, permease protein K02001 proW; glycine betaine/proline transport system permease protein
D RD1_0014 opuAA; glycine betaine transporter, ATP-binding protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D RD1_2932 opuAA; glycine betaine transporter, ATP-binding protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D RD1_0752 ABC transporter, periplasmic K15598 thiY; putative hydroxymethylpyrimidine transport system substrate-binding protein
D RD1_0756 ABC transporter, permease protein, putative K15599 thiX; putative hydroxymethylpyrimidine transport system permease protein
D RD1_0754 ABC transporter, ATP-binding protein, putative K15600 thiZ; putative hydroxymethylpyrimidine transport system ATP-binding protein
D RD1_0902 ABC transporter, substrate-binding protein, putative K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D RD1_3096 ABC transporter, periplasmic K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D RD1_3097 ABC transporter, permease protein, putative K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D RD1_3098 ABC transporter, permease protein, putative K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D RD1_0903 ssuC; aliphatic sulfonates transport permease protein, putative K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D RD1_0904 ABC transporter, putative K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D RD1_2343 ABC transporter, ATP-binding protein, putative K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D RD1_3099 ABC transporter, ATP-binding protein, putative K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D RD1_1733 sugar ABC transporter, ATP-binding protein, putative K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D RD1_1483 sugar transport ATP-binding transport protein, putative K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D RD1_2860 lacK; Lactose ABC transporter, ATP-binding protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D RD1_3622 SN-glycerol-3-phosphate ABC transporter, ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D RD1_0517 sugar ABC transporter, ATP-binding protein, putative K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D RD1_2552 gltK; glucose ABC transporter, ATP-binding subunit K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D RD1_3636 ugpC; SN-glycerol-3-phosphate transport ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D RD1_3635 sugar ABC transporter, ATP-binding protein, putative K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D RD1_3721 algS; alginate ABC transporter, ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D RD1_3739 putative sugar ABC transporter, ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D RD1_3954 sugar ABC transporter, ATP-binding protein, putative K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D RD1_3884 sugar ABC transporter, ATP-binding protein, putative K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D RD1_3880 sugar ABC transporter, ATP-binding protein, putative K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D RD1_1729 sugar ABC transporter, periplasmic sugar-binding protein K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D RD1_1730 putative sugar ABC transporter, permease protein K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D RD1_1731 putative sugar ABC transporter, permease protein K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D RD1_2322 aglE; alpha-glucoside transporter, periplasmic binding protein AglE K10232 aglE; alpha-glucoside transport system substrate-binding protein
D RD1_2323 aglF; alpha-glucoside transporter, permease protein AglF K10233 aglF; alpha-glucoside transport system permease protein
D RD1_2327 aglK; alpha-glucoside transporter, ATP-binding protein AglK K10235 aglK; alpha-glucoside transport system ATP-binding protein
D RD1_0521 putative sugar ABC transporter, periplasmic sugar-binding protein K17315 gtsA; glucose/mannose transport system substrate-binding protein
D RD1_0519 sugar ABC transporter, permease protein, putative K17316 gtsB; glucose/mannose transport system permease protein
D RD1_0518 sugar ABC transporter, permease protein, putative K17317 gtsC; glucose/mannose transport system permease protein
D RD1_2553 ABC transporter, permease protein, putative K17317 gtsC; glucose/mannose transport system permease protein
D RD1_2213 sugar ABC transporter protein, putative K10552 frcB; fructose transport system substrate-binding protein
D RD1_2212 rbcS; Ribose ABC transporter, permease protein K10553 frcC; fructose transport system permease protein
D RD1_2211 sugar ABC transporter, ATP-binding protein, putative K10554 frcA; fructose transport system ATP-binding protein
D RD1_3080 sugar ABC transporter, ATP binding protein, putative K10559 rhaS; rhamnose transport system substrate-binding protein
D RD1_3078 rbsC; ribose ABC transporter, permease protein K10560 rhaP; rhamnose transport system permease protein
D RD1_3077 sugar ABC transporter permease protein K10561 rhaQ; rhamnose transport system permease protein
D RD1_3079 rbsA; ribose transport ATP-binding protein K10562 rhaT; rhamnose transport system ATP-binding protein [EC:7.5.2.-]
D RD1_0864 ribose ABC transporter, periplasmic binding component, putative K10439 rbsB; ribose transport system substrate-binding protein
D RD1_0867 rbsC; ribose ABC transporter, permease protein K10440 rbsC; ribose transport system permease protein
D RD1_0866 ribose ABC transporter, permease protein, putative K10440 rbsC; ribose transport system permease protein
D RD1_0865 sugar ABC transporter, ATP-binding protein, putative K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D RD1_4122 sugar ABC transporter, periplasmic sugar-binding protein, putative K17321 glpV; glycerol transport system substrate-binding protein
D RD1_4118 sugar ABC transporter, permease protein, putative K17322 glpP; glycerol transport system permease protein
D RD1_4117 sugar ABC transporter, permease protein, putative K17323 glpQ; glycerol transport system permease protein
D RD1_4120 ugpC; SN-glycerol-3-phosphate transport ATP-binding protein K17324 glpS; glycerol transport system ATP-binding protein
D RD1_4119 sugar ABC transporter, ATP-binding protein, putative K17325 glpT; glycerol transport system ATP-binding protein
D RD1_2939 upgB; glycerol-3-phosphate-binding periplasmic protein precursor, putative K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein
D RD1_3571 glycerol-3-phosphate ABC transporter, periplasmic binding protein K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein
D RD1_2938 ugpA; glycerol-3-phosphate ABC transporter, permease protein K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein
D RD1_3570 glycerol-3-phosphate ABC transporter, permease protein, putative K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein
D RD1_2937 ugpE; glycerol-3-phosphate ABC transporter, permease protein K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein
D RD1_3569 inner membrane component of binding-protein-dependent transport system K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein
D RD1_2935 glycerol-3-phosphate ABC transporter, permease component K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein
D RD1_2936 ugpC; SN-glycerol-3-phosphate ABC transporter, ATP-binding protein K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10]
D RD1_3572 sugar ABC transporter, ATP-binding protein, putative K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10]
D RD1_1486 periplasmic sorbitol-binding protein, putative K10227 smoE; polyol transport system substrate-binding protein
D RD1_1485 sugar ABC transporter, permease protein, putative K10228 smoF; polyol transport system permease protein
D RD1_1484 sugar ABC transporter, permease protein, putative K10229 smoG; polyol transport system permease protein
D RD1_1647 putative sugar ABC transporter, periplasmic sugar-binding protein K07335 bmpA; basic membrane protein A and related proteins
D RD1_4074 basic membrane protein, putative K07335 bmpA; basic membrane protein A and related proteins
D RD1_1644 putative sugar ABC transporter, permease protein K23535 nupB; general nucleoside transport system permease protein
D RD1_4072 sugar ABC transporter, permease protein K23535 nupB; general nucleoside transport system permease protein
D RD1_4073 sugar ABC transporter, permease protein, putative K23536 nupC; general nucleoside transport system permease protein
D RD1_1643 putative sugar ABC transporter, permease protein K23536 nupC; general nucleoside transport system permease protein
D RD1_1645 sugar ABC transporter, ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein
D RD1_4071 sugar ABC transporter, ATP-binding protein, putative K23537 nupA; general nucleoside transport system ATP-binding protein
D RD1_2854 mce-related protein, putative K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D RD1_3241 conserved hypothetical protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D RD1_3243 ABC transporter, ATP-binding protein, putative K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D RD1_0939 toluene tolerance family protein, putative K07323 mlaC; phospholipid transport system substrate-binding protein
D RD1_2862 ABC transporter, substrate-binding protein, putative K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D RD1_3720 sugar ABC transporter, periplasmic binding protein, putative K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D RD1_3740 solute-binding protein, putative K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D RD1_1489 possible trehalose/maltose binding K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D RD1_3640 sugar ABC transporter, substrate-binding, putative K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D RD1_3883 ABC transporter, periplasmic substrate-binding protein, putative K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D RD1_3621 ABC transporter, substrate-binding protein, putative K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D RD1_3953 sugar ABC transporter, substrate-binding domain, putative K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D RD1_3882 y4oQ; ABC transporter, permease protein. putative K02025 ABC.MS.P; multiple sugar transport system permease protein
D RD1_3619 ABC transporter, permease protein, putative K02025 ABC.MS.P; multiple sugar transport system permease protein
D RD1_3639 ABC transporter permease protein, putative K02025 ABC.MS.P; multiple sugar transport system permease protein
D RD1_3719 sugar ABC transporter, permease protein, putative K02025 ABC.MS.P; multiple sugar transport system permease protein
D RD1_3742 sugar ABC transporter, permease protein, putative K02025 ABC.MS.P; multiple sugar transport system permease protein
D RD1_2863 sugar ABC transporter, permease protein, putative K02025 ABC.MS.P; multiple sugar transport system permease protein
D RD1_3951 sugar-ABC transporter, permease protein, putative K02025 ABC.MS.P; multiple sugar transport system permease protein
D RD1_3881 sugar ABC transporter, permease protein, putative K02026 ABC.MS.P1; multiple sugar transport system permease protein
D RD1_3620 sugar ABC transporter permease protein, putative K02026 ABC.MS.P1; multiple sugar transport system permease protein
D RD1_3638 sugar ABC transporter, permease protein, putative K02026 ABC.MS.P1; multiple sugar transport system permease protein
D RD1_3718 sugar ABC transporter, permease protein, putative K02026 ABC.MS.P1; multiple sugar transport system permease protein
D RD1_3743 sugar ABC transporter, permease protein, putative K02026 ABC.MS.P1; multiple sugar transport system permease protein
D RD1_2864 ABC transporter, permease protein, putative K02026 ABC.MS.P1; multiple sugar transport system permease protein
D RD1_3950 putative sugar ABC transporter, permease protein K02026 ABC.MS.P1; multiple sugar transport system permease protein
D RD1_0488 putative sugar ABC transporter, periplasmic sugar-binding protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein
D RD1_2380 sugar ABC transporter, substrate-binding protein, putative K02058 ABC.SS.S; simple sugar transport system substrate-binding protein
D RD1_2381 rbsC; ribose ABC transporter, permease protein K02057 ABC.SS.P; simple sugar transport system permease protein
D RD1_0487 sugar ABC transporter, permease protein K02057 ABC.SS.P; simple sugar transport system permease protein
D RD1_2382 sugar uptake ABC transporter ATP-binding protein, putative K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-]
D RD1_0486 sugar ABC transporter, ATP-binding protein, putative K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-]
D RD1_2642 pstS; phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D RD1_2643 pstC; phosphate ABC transporter, permease protein K02037 pstC; phosphate transport system permease protein
D RD1_2644 pstA; phosphate ABC transporter, permease protein K02038 pstA; phosphate transport system permease protein
D RD1_2646 pstB; phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D RD1_1057 phnD; phosphonate ABC transporter, periplasmic binding protein, putative K02044 phnD; phosphonate transport system substrate-binding protein
D RD1_2402 phosphonate ABC transporter, periplasmic phosphonate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein
D RD1_2401 phnE; phosphonate ABC transporter, permease protein K02042 phnE; phosphonate transport system permease protein
D RD1_1054 phosphonate ABC transporter, permease protein, putative K02042 phnE; phosphonate transport system permease protein
D RD1_1055 phnE; phosphonate ABC transporter, permease component K02042 phnE; phosphonate transport system permease protein
D RD1_2403 phnC; phosphonate ABC transporter, ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D RD1_1056 phnC; phosphonate ABC transporter, ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D RD1_1444 bztA; glutamate/glutamine/aspartate/asparagine-binding protein K09969 aapJ; general L-amino acid transport system substrate-binding protein
D RD1_1445 bztB; glutamate/glutamine/aspartate/asparagine transport system permease protein K09970 aapQ; general L-amino acid transport system permease protein
D RD1_1446 amino acid ABC transporter, permease protein K09971 aapM; general L-amino acid transport system permease protein
D RD1_2631 branched-chain amino acid ABC transporter, periplasmic substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D RD1_3591 branched-chain amino acid ABC transporter, periplasmic binding protein, putative K01999 livK; branched-chain amino acid transport system substrate-binding protein
D RD1_0854 branched-chain amino acid ABC transporter, periplasmic substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D RD1_1502 branched-chain amino acid ABC transporter, periplasmic binding protein, putative K01999 livK; branched-chain amino acid transport system substrate-binding protein
D RD1_0540 ABC transporter substrate binding protei K01999 livK; branched-chain amino acid transport system substrate-binding protein
D RD1_0708 conserved hypothetical protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D RD1_0631 ABC transporter, periplasmic substrate-binding protein, putative K01999 livK; branched-chain amino acid transport system substrate-binding protein
D RD1_2843 branched-chain amino acid ABC transporter, periplasmic binding protein, putative K01999 livK; branched-chain amino acid transport system substrate-binding protein
D RD1_0541 branched-chain amino acid ABC transporter, permease protein, putative K01997 livH; branched-chain amino acid transport system permease protein
D RD1_0855 branched-chain amino acid ABC transporter, permease protein K01997 livH; branched-chain amino acid transport system permease protein
D RD1_1504 branched-chain amino acid ABC transporter, permease protein K01997 livH; branched-chain amino acid transport system permease protein
D RD1_2627 branched-chain amino acid ABC transporter, permease protein, putative K01997 livH; branched-chain amino acid transport system permease protein
D RD1_0704 branched-chain amino acid ABC transporter, permease protein, putative K01997 livH; branched-chain amino acid transport system permease protein
D RD1_3589 branched-chain amino acid ABC transporter, permease protein K01997 livH; branched-chain amino acid transport system permease protein
D RD1_2844 branched-chain amino acid ABC transporter, permease protein, putative K01997 livH; branched-chain amino acid transport system permease protein
D RD1_0706 branched-chain amino acid ABC transporter, permease protein, putative K01998 livM; branched-chain amino acid transport system permease protein
D RD1_0542 branched-chain amino acid ABC transporter, permease protein, putative K01998 livM; branched-chain amino acid transport system permease protein
D RD1_0856 branched-chain amino acid ABC transporter, permease protein K01998 livM; branched-chain amino acid transport system permease protein
D RD1_1505 branched-chain amino acid ABC transporter, permease protein, putative K01998 livM; branched-chain amino acid transport system permease protein
D RD1_3590 branched-chain amino acid ABC transporter, permease protein, putative K01998 livM; branched-chain amino acid transport system permease protein
D RD1_2626 branched-chain amino acid ABC transporter, permease protein, putative K01998 livM; branched-chain amino acid transport system permease protein
D RD1_1501 branched-chain amino acid ABC transporter, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D RD1_2630 branched-chain amino acid ABC transporter, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D RD1_0543 ABC transporter subunit, putative K01995 livG; branched-chain amino acid transport system ATP-binding protein
D RD1_0703 branched-chain amino acid ABC transporter, ATP-binding protein, putative K01995 livG; branched-chain amino acid transport system ATP-binding protein
D RD1_0858 branched-chain amino acid ABC transporter, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D RD1_2846 branched-chain amino acid ABC transporter, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D RD1_3587 branched-chain amino acid ABC transporter, ATP-binding protein, putative K01995 livG; branched-chain amino acid transport system ATP-binding protein
D RD1_0709 branched-chain amino acid ABC transporter, ATP-binding protein, putative K01996 livF; branched-chain amino acid transport system ATP-binding protein
D RD1_0544 ABC transporter, ATP-binding protein, putative K01996 livF; branched-chain amino acid transport system ATP-binding protein
D RD1_0859 branched-chain amino acid ABC transporter, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D RD1_1503 branched-chain amino acid ABC transporter, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D RD1_2628 branched-chain amino acid ABC transporter, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D RD1_2847 branched-chain amino acid ABC transporter, ATP-binding protein, putative K01996 livF; branched-chain amino acid transport system ATP-binding protein
D RD1_3588 branched chain amino acid ABC transporter, ATP-binding protein, putative K01996 livF; branched-chain amino acid transport system ATP-binding protein
D RD1_2166 ABC transporter, substrate-binding protein, putative K11959 urtA; urea transport system substrate-binding protein
D RD1_3596 ABC transporter, substrate-binding protein, putative K11959 urtA; urea transport system substrate-binding protein
D RD1_3598 branched-chain amino acid transport system permease component, putative K11960 urtB; urea transport system permease protein
D RD1_2165 branched-chain amino acid ABC transporter, permease protein, putative K11960 urtB; urea transport system permease protein
D RD1_3599 branched-chain amino acid ABC transporter, permease protein, putative K11961 urtC; urea transport system permease protein
D RD1_2164 branched-chain amino acid ABC transporter, permease protein, putative K11961 urtC; urea transport system permease protein
D RD1_2163 putative ABC transporter, ATP-binding component K11962 urtD; urea transport system ATP-binding protein
D RD1_3600 branched-chain amino acid ABC transport, ATP-binding protein, putative K11962 urtD; urea transport system ATP-binding protein
D RD1_2162 ABC transporter, ATP-binding protein, putative K11963 urtE; urea transport system ATP-binding protein
D RD1_3601 ABC transporter, ATP-binding protein, putative K11963 urtE; urea transport system ATP-binding protein
D RD1_1898 periplasmic binding protein, putative K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D RD1_2182 amino acid ABC transporter, periplasmic-binding protein, putative K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D RD1_2183 glutamine ABC transporter, permease protein, putative K02029 ABC.PA.P; polar amino acid transport system permease protein
D RD1_1899 amino acid ABC transporter, ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D RD1_2184 amino acid ABC transporter, ATP-binding protein, putative K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D RD1_1101 oligopeptide ABC transporter, periplasmic binding protein, putative K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D RD1_1291 dipeptide ABC transporter, putative K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D RD1_2741 ABC transporter, periplasmic substrate-binding protein, putative K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D RD1_3314 peptide ABC transporter, periplasmic substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D RD1_0231 oligopeptide ABC transporter, periplasmic binding protein, putative K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D RD1_1979 ABC transporter, periplasmic binding protein, putative K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D RD1_2225 bacterial extracellular solute-binding proteins, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D RD1_2226 extracellular solute-binding protein, putative K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D RD1_1859 dipeptide ABC transporter, substrate-binding protein, putative K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D RD1_0390 ABC transporter, substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D RD1_2581 oligopeptide ABC transporter, permease protein, putative K02033 ABC.PE.P; peptide/nickel transport system permease protein
D RD1_1100 oligopeptide ABC transporter, permease protein, putative K02033 ABC.PE.P; peptide/nickel transport system permease protein
D RD1_3315 ABC transporter, permease protein, putative K02033 ABC.PE.P; peptide/nickel transport system permease protein
D RD1_1862 oligopeptide ABC transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D RD1_1978 ABC transporter, permease protein, putative K02033 ABC.PE.P; peptide/nickel transport system permease protein
D RD1_2224 peptide ABC transporter, permease protein, putative K02033 ABC.PE.P; peptide/nickel transport system permease protein
D RD1_2580 oligopeptide ABC transporter, permease protein, putative K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D RD1_1099 oligopeptide ABC transporter, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D RD1_3316 ABC transporter, permease protein, putative K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D RD1_1977 ABC transporter, permease protein, putative K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D RD1_2223 peptide ABC transporter, permease protein, putative K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D RD1_1863 nikC; nickel transport system permease protein nikC K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D RD1_1976 ABC transporter, ATP-binding protein, putative K02031 ddpD; peptide/nickel transport system ATP-binding protein
D RD1_2578 ABC transporter, ATP-binding protein, putative K02031 ddpD; peptide/nickel transport system ATP-binding protein
D RD1_1102 ABC transporter ATP-binding protein, putative K02031 ddpD; peptide/nickel transport system ATP-binding protein
D RD1_2222 peptide ABC transporter, ATP-binding protein, putative K02031 ddpD; peptide/nickel transport system ATP-binding protein
D RD1_1263 ABC transporter, periplasmic substrate-binding protein, putative K13893 yejA; microcin C transport system substrate-binding protein
D RD1_1264 peptide ABC transporter, permease protein, putative K13894 yejB; microcin C transport system permease protein
D RD1_1265 ABC transporter, permease protein, putative K13895 yejE; microcin C transport system permease protein
D RD1_1266 peptide ABC transporter, ATP-binding protein, putative K13896 yejF; microcin C transport system ATP-binding protein
D RD1_4189 hmuT; hemin ABC transporter, periplasmic hemin-binding protein K25132 hmuT; heme transport system substrate-binding protein
D RD1_4190 hemin ABC transporter, permease component, puative K25133 hmuU; heme transport system permease protein
D RD1_4191 hmuV; hemin ABC transporter protein, ATP-binding component K10834 hmuV; heme transport system ATP-binding protein [EC:7.6.2.5]
D RD1_3480 putative iron ABC transporter, periplasmic binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D RD1_2673 iron ABC transporter, periplasmic iron-binding protein, putative K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D RD1_2674 FecCD-family membrane transport protein, putative K02015 ABC.FEV.P; iron complex transport system permease protein
D RD1_3479 putative hemin ABC transport protein, permease component K02015 ABC.FEV.P; iron complex transport system permease protein
D RD1_2675 Fe-ABC transporter, ATP-binding subunit, putative K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D RD1_3481 iron ABC transporter, ATP-binding protein, putative K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D RD1_4004 znuA; zinc ABC transporter, periplasmic zinc-binding protein K09815 znuA; zinc transport system substrate-binding protein
D RD1_4007 znuB; zinc ABC transporter, permease protein K09816 znuB; zinc transport system permease protein
D RD1_4006 znuC; zinc ABC transporter, ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D RD1_0922 zinc/manganese/iron ABC transporter, periplasmic zinc/manganese/iron-binding protein K11707 troA; manganese/zinc/iron transport system substrate-binding protein
D RD1_0920 putative zinc/manganese/iron ABC transporter, permease protein K11708 troC; manganese/zinc/iron transport system permease protein
D RD1_0919 putative zinc/manganese/iron ABC transporter, permease protein K11709 troD; manganese/zinc/iron transport system permease protein
D RD1_0921 troB; zinc ABC transporter, ATP-binding protein K11710 troB; manganese/zinc/iron transport system ATP- binding protein [EC:7.2.2.5]
D RD1_2561 bioY; BioY family protein, putative K03523 bioY; biotin transport system substrate-specific component
D RD1_3119 membrane protein, putative K07091 lptF; lipopolysaccharide export system permease protein
D RD1_3120 permease YjgP/YjgQ family, putative K11720 lptG; lipopolysaccharide export system permease protein
D RD1_0371 ABC transporter, ATP-binding protein, putative K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D RD1_1550 nosY; nitrous oxide maturation protein NosY K19341 nosY; Cu-processing system permease protein
D RD1_1549 nosF; copper transport ATP-binding protein NosF K19340 nosF; Cu-processing system ATP-binding protein
D RD1_0770 ABC transporter, permease protein, putative K25151 gldF; gliding motility-associated transport system permease protein
D RD1_0771 ABC transporter, ATP-binding protein, putative K25152 gldA; gliding motility-associated transport system ATP-binding protein
D RD1_0769 conserved hypothetical protein K25153 gldG; gliding motility-associatede transport system auxiliary component
D RD1_2047 lipoprotein releasing system transmembrane protein, putative K09808 lolC_E; lipoprotein-releasing system permease protein
D RD1_2048 lolD; ABC transporter, ATP-binding protein, putative K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D RD1_2549 ccmC; heme exporter protein K02195 ccmC; heme exporter protein C
D RD1_2548 ccmB; heme exporter protein ccmB, putative K02194 ccmB; heme exporter protein B
D RD1_2547 ccmA; heme ABC exporter, ATP-binding protein CcmA, putative K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D RD1_1600 cell division permease, putative K09811 ftsX; cell division transport system permease protein
D RD1_1599 ftsE; cell division ATP-binding protein, putative K09812 ftsE; cell division transport system ATP-binding protein
D RD1_1158 ABC transporter, permease protein, putative K01992 ABC-2.P; ABC-2 type transport system permease protein
D RD1_4092 ABC transporter, permease protein, putative K01992 ABC-2.P; ABC-2 type transport system permease protein
D RD1_4202 ABC transporter, permease protein, putativ K01992 ABC-2.P; ABC-2 type transport system permease protein
D RD1_1159 ABC transporter, ATP-binding protein, putative K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D RD1_4093 ABC transporter, ATP-binding protein, putative K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D RD1_4201 ABC transporter, ATP-binding protein, putative K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D RD1_1226 ABC transporter, permease protein, putative K02004 ABC.CD.P; putative ABC transport system permease protein
D RD1_2241 permease, putative K02004 ABC.CD.P; putative ABC transport system permease protein
D RD1_1737 peptide ABC transporter, permease component, putative K02004 ABC.CD.P; putative ABC transport system permease protein
D RD1_1026 ABC transporter, permease protein, putative K02004 ABC.CD.P; putative ABC transport system permease protein
D RD1_1738 bceA; bacitracin export ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D RD1_2240 ABC transporter, ATP-binding protein, putative K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D RD1_1025 ABC transporter, ATP-binding protein, putative K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D RD1_1227 ABC transporter, ATP-binding protein, putative K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D RD1_2694 sufC; FeS assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein
D RD1_2060 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump
D RD1_1220 MATE efflux pump protein K26937 dinF; MATE family, multidrug efflux pump
D RD1_3962 dinF; DNA-damage-inducible protein, putative K26937 dinF; MATE family, multidrug efflux pump
D RD1_2470 MatE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D RD1_2083 MATE efflux family protein, putative K26937 dinF; MATE family, multidrug efflux pump
D RD1_2399 membrane transporter, putative K25223 arsJ; MFS transporter, APGE family, 1-arseno-3-phosphoglycerate exporter
D RD1_2440 napA; nitrate permease K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D RD1_2441 narK; nitrite extrusion protein K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D RD1_0134 lhaA; LhaA protein K08226 pucC; MFS transporter, BCD family, chlorophyll transporter
D RD1_3545 pucC; PucC protein K08226 pucC; MFS transporter, BCD family, chlorophyll transporter
D RD1_0145 PucC family protein, putative K08226 pucC; MFS transporter, BCD family, chlorophyll transporter
D RD1_3936 tetA; tetracycline resistance protein K08151 tetA; MFS transporter, DHA1 family, tetracycline resistance protein
D RD1_2027 MFS protein, putative K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D RD1_2745 MFS permease protein, putative K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D RD1_A0084 drug resistance transporter Bcr K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D RD1_0361 major Facilitator Superfamily (MFS) transporter, permease component, putative K06902 UMF1; MFS transporter, UMF1 family
D RD1_2158 ptsP; phosphoenolpyruvate-protein phosphotransferase, putative K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D RD1_1383 ptsH; phosphocarrier protein Hpr K02784 ptsH; phosphocarrier protein HPr
D RD1_1382 PTS system IIA component, putative K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D RD1_0373 ptsN; nitrogen regulatory IIA protein K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D RD1_3048 apqZ; aquaporin Z K06188 aqpZ; aquaporin Z
D RD1_0715 putative voltage-gated K+ channel protein K10716 kch; voltage-gated potassium channel
D RD1_0405 ccaA; voltage-gated sodium channel subunit K08714 VGSC; voltage-gated sodium channel
D RD1_0936 putative ammonium ABC transporter, permease component K03320 amt; ammonium transporter, Amt family
D RD1_0924 amt-2; putative ammonium transporter K03320 amt; ammonium transporter, Amt family
D RD1_0058 glutathione S-transferase domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RD1_3296 gst; glutathione S-transferase, putative K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RD1_3971 gst; glutathione S-transferase, putative K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RD1_0699 gst; glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RD1_0053 glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RD1_1133 gst; glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RD1_1194 conserved domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RD1_3777 conserved hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RD1_0877 conserved hypothetical protein K07114 yfbK; Ca-activated chloride channel homolog
D RD1_1625 von Willebrand factor type A domain prot K07114 yfbK; Ca-activated chloride channel homolog
D RD1_0525 conserved hypothetical protein K07114 yfbK; Ca-activated chloride channel homolog
D RD1_0875 conserved hypothetical protein K07114 yfbK; Ca-activated chloride channel homolog
D RD1_0876 conserved hypothetical protein K07114 yfbK; Ca-activated chloride channel homolog
D RD1_0526 conserved hypothetical protein K07114 yfbK; Ca-activated chloride channel homolog
D RD1_B0031 von Willebrand factor type A domain protein, putative K07114 yfbK; Ca-activated chloride channel homolog
D RD1_1015 mscL; large conductance mechanosensitive channel protein K03282 mscL; large conductance mechanosensitive channel
D RD1_2300 mechanosensitive ion channel protein, putative K05802 mscK; potassium-dependent mechanosensitive channel
D RD1_0945 conserved hypothetical protein K03442 mscS; small conductance mechanosensitive channel
D RD1_2453 conserved hypothetical protein K03442 mscS; small conductance mechanosensitive channel
D RD1_3733 mechanosensitive ion channel protein, putative K22044 ybiO; moderate conductance mechanosensitive channel
D RD1_1096 mechanosensitive ion channel protein, putative K22044 ybiO; moderate conductance mechanosensitive channel
D RD1_0069 mechanosensitive ion channel protein, putative K22044 ybiO; moderate conductance mechanosensitive channel
D RD1_2009 mgtE; putative magnesium transporter K06213 mgtE; magnesium transporter
D RD1_0273 motA; chemotaxis MotA protein K02556 motA; chemotaxis protein MotA
D RD1_3382 conserved hypothetical protein K02557 motB; chemotaxis protein MotB
D RD1_0583 motB; chemotaxis protein MotB, putative K02557 motB; chemotaxis protein MotB
D RD1_4196 MotA/TolQ/ExbB proton channel family domain protein K03561 exbB; biopolymer transport protein ExbB
D RD1_4197 hypothetical protein K03559 exbD; biopolymer transport protein ExbD
D RD1_4198 hypothetical protein K03559 exbD; biopolymer transport protein ExbD
D RD1_2093 tolQ; putative proton transporter TolQ K03562 tolQ; biopolymer transport protein TolQ
D RD1_2095 ExbD/TolR family biopolymer transport protein, putative K03560 tolR; biopolymer transport protein TolR
D RD1_1440 crcB; CrcB-like protein K06199 crcB; fluoride exporter
D RD1_3092 CBS domain protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D RD1_0047 outer membrane porin, putative K08720 ompU; outer membrane protein OmpU
D RD1_0954 OmpA family domain protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D RD1_4081 OmpA domain protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D RD1_2780 long-chain fatty acid protein, putative K06076 fadL; long-chain fatty acid transport protein
D RD1_1347 lipase, putative K12686 apeE; outer membrane lipase/esterase
D RD1_4193 hugA; heme transport protein K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D RD1_1742 type I secretion outer membrane protein, TolC family, putative K12340 tolC; outer membrane protein
D RD1_1125 aggA; agglutination protein, putative K12543 lapE; outer membrane protein, adhesin transport system
D RD1_3841 polysaccharide biosynthesis/export protein, putative K01991 wza; polysaccharide biosynthesis/export protein
D RD1_B0026 polysaccharide biosynthesis protein K01991 wza; polysaccharide biosynthesis/export protein
D RD1_2593 outer membrane protein, putative K07277 SAM50; outer membrane protein insertion porin family
D RD1_1781 PQQ enzyme repeat family protein K17713 bamB; outer membrane protein assembly factor BamB
D RD1_3345 comL; competence lipoprotein ComL, putative K05807 bamD; outer membrane protein assembly factor BamD
D RD1_2329 outer membrane protein, putative K07278 tamA; translocation and assembly module TamA
D RD1_2330 conserved hypothetical protein K09800 tamB; translocation and assembly module TamB
D RD1_0370 conserved hypothetical protein K09774 lptA; lipopolysaccharide export system protein LptA
D RD1_0369 conserved hypothetical protein K11719 lptC; lipopolysaccharide export system protein LptC
D RD1_3121 ost; organic solvent tolerance protein, putative K04744 lptD; LPS-assembly protein
D RD1_0050 lipoprotein, putative K03643 lptE; LPS-assembly lipoprotein
D RD1_3918 hemolysin-like protein, putative K06189 corC; hemolysin (HlyC) family protein
D RD1_0757 arcD; arginine/ornithine antiporter K03758 arcD; arginine:ornithine antiporter / lysine permease
D RD1_1631 hypothetical protein K07238 TC.ZIP; zinc transporter, ZIP family
D RD1_2533 acrF; RND multidrug efflux transporter protein K18138 acrB; multidrug efflux pump
D RD1_1778 AcrB/AcrD/AcrF family protein, putative K18989 vexF; multidrug efflux pump
D RD1_2706 qacE; quaternary ammonium compound-resistance protein K03297 emrE; small multidrug resistance pump
D RD1_0601 conserved hypothetical membrane protein K15269 pecM; probable blue pigment (indigoidine) exporter
D RD1_4094 integral membrane protein, putative K15270 sam; S-adenosylmethionine uptake transporter
D RD1_1119 rarD; rarD protein, putative K05786 rarD; chloramphenicol-sensitive protein RarD
D RD1_2050 conserved hypothetical protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D RD1_A0004 opuD; glycine betaine transporter K05020 opuD; glycine betaine transporter
D RD1_2291 opuD; glycine betaine transporter OpuD, putative K02168 betT; choline/glycine/proline betaine transport protein
D RD1_4090 sodium/calcium exchanger protein, putative K07301 yrbG; cation:H+ antiporter
D RD1_1114 sodium symporter, putative K14393 actP; cation/acetate symporter
D RD1_A0002 gltS; sodium/glutamate symporter K03312 gltS; glutamate:Na+ symporter, ESS family
D RD1_3698 sodium/hydrogen exchanger family, putative K03316 nhaP; Na+:H+ antiporter
D RD1_1828 kefC; glutathione-regulated potassium-efflux system protein K11747 kefB; glutathione-regulated potassium-efflux system protein KefB
D RD1_2465 trkH; Trk potassium uptake system protein, transmembrane component K03498 trkH; trk/ktr system potassium uptake protein
D RD1_1942 trkH-1; Trk system potassium uptake protein K03498 trkH; trk/ktr system potassium uptake protein
D RD1_2756 trkH-2; Trk system potassium uptake protein K03498 trkH; trk/ktr system potassium uptake protein
D RD1_2464 trkA; Trk potassium uptake system protein K03499 trkA; trk/ktr system potassium uptake protein
D RD1_2757 trkA; Trk system potassium uptake protein TrkA K03499 trkA; trk/ktr system potassium uptake protein
D RD1_3343 voltage-gated chloride channel protein, putative K03281 clcA; chloride channel protein, CIC family
D RD1_2278 chromate transporter K07240 chrA; chromate transporter
D RD1_0783 sulfate transporter, permease protein, putative K03321 TC.SULP; sulfate permease, SulP family
D RD1_2151 sulfate transporter family protein K03321 TC.SULP; sulfate permease, SulP family
D RD1_1286 dctP; C4-dicarboxylate-binding periplasmic protein K11688 dctP; C4-dicarboxylate-binding protein DctP
D RD1_2185 dctP; C4-dicarboxylate-binding periplasmic protein, putative K11688 dctP; C4-dicarboxylate-binding protein DctP
D RD1_0741 conserved hypothetical protein K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit
D RD1_0832 tauL; C4-dicarboxylate transport system, small permease protein, putative K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit
D RD1_2186 TRAP transporter, DctQ-like subunit, putative K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit
D RD1_1476 TrapT family, DctM subunit, putative K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D RD1_1049 TRAP dicarboxylate transporter, DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D RD1_1542 TRAP dicarboxylate transporter, DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D RD1_2187 TRAP transporter, DctM subunit, putative K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D RD1_0241 putative TRAP dicarboxylate family transporter, DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D RD1_4102 TRAP dicarboxylate transporter, DctM subunit, putative K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D RD1_0740 TRAP-type C4-dicarboxylate transport protein, permease component K21393 yiaN; TRAP-type transport system large permease protein
D RD1_2314 dctM; TRAP-type transporter, DctM subunit, putative K21393 yiaN; TRAP-type transport system large permease protein
D RD1_3608 TRAP transporter, DctQ-like membrane protein, putative K21394 yiaM; TRAP-type transport system small permease protein
D RD1_2313 C4-dicarboxylate transport system, permease small protein, putative K21394 yiaM; TRAP-type transport system small permease protein
D RD1_0742 C4-dicarboxylate-binding protein, putative K21395 yiaO; TRAP-type transport system periplasmic protein
D RD1_0833 tauK; periplasmic substrate-binding transport protein, putative K21395 yiaO; TRAP-type transport system periplasmic protein
D RD1_1539 C4-dicarboxylate binding protein, putative K21395 yiaO; TRAP-type transport system periplasmic protein
D RD1_3609 C4-dicarboxylate transport system, substrate-binding protein, putative K21395 yiaO; TRAP-type transport system periplasmic protein
D RD1_2315 TRAP-type C4-dicarboxylate transport system protein, putative K21395 yiaO; TRAP-type transport system periplasmic protein
D RD1_4100 TRAP dicarboxylate transporter, DctP subunit, putative K21395 yiaO; TRAP-type transport system periplasmic protein
D RD1_3567 Na+/Pi-cotransporter, putative K03324 yjbB; phosphate:Na+ symporter
D RD1_0242 membrane protein, putative K03325 ACR3; arsenite transporter
D RD1_3552 phaA; pH adaption potassium efflux system protein PhaA K05559 phaA; multicomponent K+:H+ antiporter subunit A
D RD1_3551 phaC; pH adaption potassium efflux system protein K05560 phaC; multicomponent K+:H+ antiporter subunit C
D RD1_3550 phaD; pH adaption potassium efflux system protein K05561 phaD; multicomponent K+:H+ antiporter subunit D
D RD1_3549 phaE; pH adaption potassium efflux system protein K05562 phaE; multicomponent K+:H+ antiporter subunit E
D RD1_3548 phaF; pH adaptation potassium efflux system protein K05563 phaF; multicomponent K+:H+ antiporter subunit F
D RD1_3547 putative potassium efflux system protein K05564 phaG; multicomponent K+:H+ antiporter subunit G
D RD1_1187 mviN; virulence factor MviN-like protein K03980 murJ; putative peptidoglycan lipid II flippase
D RD1_0319 auxin efflux carrier family protein, putative K13936 mdcF; malonate transporter and related proteins
D RD1_3470 auxin efflux carrier family protein K13936 mdcF; malonate transporter and related proteins
D RD1_0030 auxin efflux carrier family protein K24180 mleP; malate permease and related proteins
D RD1_0021 homoserine/lactone efflux protein K05834 rhtB; homoserine/homoserine lactone efflux protein
D RD1_2149 LysE family protein K05834 rhtB; homoserine/homoserine lactone efflux protein
D RD1_1363 rhtC; threonine efflux protein, putative K05835 rhtC; threonine efflux protein
D RD1_3200 threonine efflux protein K05835 rhtC; threonine efflux protein
D RD1_1417 threonine efflux protein K05835 rhtC; threonine efflux protein
D RD1_3411 AzlC family protein K26605 azlC; branched chain amino acid efflux pump
D RD1_3412 conserved hypothetical protein K26606 azlD; branched chain amino acid efflux pump
D RD1_2948 conserved hypothetical protein K07793 tctA; putative tricarboxylic transport membrane protein
D RD1_1865 integral membrane protein, putative K07793 tctA; putative tricarboxylic transport membrane protein
D RD1_2200 integral membrane protein, putative K07793 tctA; putative tricarboxylic transport membrane protein
D RD1_2922 integral membrane protein, putative K07793 tctA; putative tricarboxylic transport membrane protein
D RD1_2947 membrane protein, putative K07794 tctB; putative tricarboxylic transport membrane protein
D RD1_2201 conserved hypothetical protein K07794 tctB; putative tricarboxylic transport membrane protein
D RD1_2946 conserved hypothetical protein K07795 tctC; putative tricarboxylic transport membrane protein
D RD1_2202 conserved hypothetical protein K07795 tctC; putative tricarboxylic transport membrane protein
D RD1_2920 conserved hypothetical protein K07795 tctC; putative tricarboxylic transport membrane protein
D RD1_1867 exported protein, putative K07795 tctC; putative tricarboxylic transport membrane protein
D RD1_0365 conserved hypothetical membrane protein K09125 yhhQ; queuosine precursor transporter
D RD1_0286 conserved hypothetical membrane protein K22736 VIT; vacuolar iron transporter family protein
D RD1_3115 MarC family integral membrane protein, putative K05595 marC; multiple antibiotic resistance protein
D RD1_3358 ftsW; cell division protein FtsW, putative K03588 ftsW; cell division protein FtsW
D RD1_4199 conserved domain protein K03832 tonB; periplasmic protein TonB
D RD1_2098 pal; peptidoglycan-associated lipoprotein, putative K03640 pal; peptidoglycan-associated lipoprotein
D RD1_2097 tolB; TolB protein, putative K03641 tolB; TolB protein
D RD1_1509 ccdA; cytochrome c biogenesis protein K06196 ccdA; cytochrome c-type biogenesis protein
D RD1_2269 ccdA; cytochrome c-type biogenesis protein CcdA K06196 ccdA; cytochrome c-type biogenesis protein
D RD1_0214 ccdA; cytochrome c biogenesis protein, putative K06196 ccdA; cytochrome c-type biogenesis protein
D RD1_2442 narG; nitrate reductase, alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D RD1_2443 narH; nitrate reductase, beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D RD1_2445 narI; nitrate reductase, gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-]
D RD1_3664 dmsA; dimethyl sulfoxide reductase K07812 torZ; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D RD1_1721 type I secretion membrane fusion protein, HlyD family, putative K12537 hasE; membrane fusion protein, type I secretion system
D RD1_B0014 HlyD family secretion protein K12537 hasE; membrane fusion protein, type I secretion system
D RD1_1123 HlyD family secretion protein, putative K12542 lapC; membrane fusion protein, adhesin transport system
D RD1_0592 putative HlyD family secretion protein K12542 lapC; membrane fusion protein, adhesin transport system
D RD1_3728 lktD; leukotoxin secretion protein D, putative K12542 lapC; membrane fusion protein, adhesin transport system
D RD1_2534 acrE; RND efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D RD1_3422 efflux transporter, RND family, MFP subunit, putative K03585 acrA; membrane fusion protein, multidrug efflux system
D RD1_0759 RND efflux membrane fusion protein, putative K21137 triB; membrane fusion protein, multidrug efflux system
D RD1_2207 conserved hypothetical protein K21137 triB; membrane fusion protein, multidrug efflux system
D RD1_1779 conserved hypothetical protein K18990 vexE; membrane fusion protein, multidrug efflux system
D RD1_3835 chain length determinant domain protein K16554 exoP; polysaccharide biosynthesis transport protein [EC:2.7.10.3]
D RD1_B0021 exopolysaccharide biosynthesis K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3]
D RD1_B0022 putative polysaccharide chain length determinant protein K25590 epsF; protein tyrosine kinase modulator
D RD1_0118 crtK; CrtK protein K05770 TSPO; translocator protein
D RD1_1085 EcnA/B family entericidin, putative K16348 ecnB; entericidin B
D RD1_3223 cycK; cytochrome c-type biogenesis protein K02198 ccmF; cytochrome c-type biogenesis protein CcmF
D RD1_2452 MgtC family protein K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
D RD1_4150 conserved hypothetical protein K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]
C 02044 Secretion system [BR:rde02044]
D RD1_1742 type I secretion outer membrane protein, TolC family, putative K12340 tolC; outer membrane protein
D RD1_1720 prsD; type I secretion system ATPase K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D RD1_B0013 ABC transporter, putative K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D RD1_1721 type I secretion membrane fusion protein, HlyD family, putative K12537 hasE; membrane fusion protein, type I secretion system
D RD1_B0014 HlyD family secretion protein K12537 hasE; membrane fusion protein, type I secretion system
D RD1_1124 toxin secretion ABC transporter, ATP-binding component, putative K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D RD1_3725 toxin secretion ABC transporter, ATP binding protein, putative K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D RD1_3726 toxin secretion ABC transporter, ATP binding component, putative K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D RD1_0594 ABC transporter, ATP-binding permease protein, putative K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D RD1_0593 putative cyclosin secreting ABC transporter, ATP binding protein K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D RD1_1123 HlyD family secretion protein, putative K12542 lapC; membrane fusion protein, adhesin transport system
D RD1_0592 putative HlyD family secretion protein K12542 lapC; membrane fusion protein, adhesin transport system
D RD1_3728 lktD; leukotoxin secretion protein D, putative K12542 lapC; membrane fusion protein, adhesin transport system
D RD1_1125 aggA; agglutination protein, putative K12543 lapE; outer membrane protein, adhesin transport system
D RD1_B0023 exeA; general secretion pathway protein A K02450 gspA; general secretion pathway protein A
D RD1_2122 pilus assembly domain protein K02279 cpaB; pilus assembly protein CpaB
D RD1_2120 type II/III secretion system protein, putative K02280 cpaC; pilus assembly protein CpaC
D RD1_2117 conserved hypothetical protein K02282 cpaE; pilus assembly protein CpaE
D RD1_2116 type II/IV secretion system protein, putative K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D RD1_2115 type II secretion system protein, putative K12510 tadB; tight adherence protein B
D RD1_2113 type II/IV secretion system protein, TadC subfamily, putative K12511 tadC; tight adherence protein C
D RD1_0360 YGGT family protein K02221 yggT; YggT family protein
D RD1_3217 com; competence protein, putative K02238 comEC; competence protein ComEC
D RD1_0149 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D RD1_0151 flhB; flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D RD1_0268 fliF; flagellar M-ring protein FliF, putative K02409 fliF; flagellar M-ring protein FliF
D RD1_0251 fliI; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D RD1_0266 fliN; flagellar motor switch protein FliN, putative K02417 fliN; flagellar motor switch protein FliN
D RD1_0265 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D RD1_0256 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D RD1_0150 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D RD1_A0016 hypothetical protein K03197 virB2; type IV secretion system protein VirB2
D RD1_A0015 type IV secretion system protein, putative K03198 virB3; type IV secretion system protein VirB3
D RD1_A0014 virB4; VirB4 protein, putative K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8]
D RD1_A0013 RC163, putative K03200 virB5; type IV secretion system protein VirB5
D RD1_A0011 putative conjugal transfer protein K03201 virB6; type IV secretion system protein VirB6
D RD1_A0010 VirB8 protein K03203 virB8; type IV secretion system protein VirB8
D RD1_A0009 putative VirB9 protein K03204 virB9; type IV secretion system protein VirB9
D RD1_A0008 putative VirB10 protein K03195 virB10; type IV secretion system protein VirB10
D RD1_A0007 virB11; type IV secretory pathway, VirB11 component, putative K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8]
D RD1_A0111 virD1; VirD1 K18433 virD1; type IV secretion system T-DNA border endonuclease VirD1
D RD1_A0112 virD2; VirD2 protein K18434 virD2; type IV secretion system T-DNA border endonuclease VirD2
D RD1_C0002 virD; virD4 protein, putative K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D RD1_A0114 virD4 protein, putative K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D RD1_1347 lipase, putative K12686 apeE; outer membrane lipase/esterase
D RD1_1024 conserved hypothetical protein K11912 ppkA; serine/threonine-protein kinase PpkA [EC:2.7.11.1]
D RD1_0382 secA; preprotein translocase, SecA subunit, putative K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RD1_0441 secB; protein-export protein SecB, putative K03071 secB; preprotein translocase subunit SecB
D RD1_2544 secD; protein-export membrane protein SecD, putative K03072 secD; preprotein translocase subunit SecD
D RD1_4025 secE; preprotein translocase, SecE subunit, putative K03073 secE; preprotein translocase subunit SecE
D RD1_2545 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D RD1_1907 secG; preprotein translocase, SecG subunit, putative K03075 secG; preprotein translocase subunit SecG
D RD1_1432 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D RD1_1315 signal recognition particle protein, putative K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D RD1_1932 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D RD1_2543 yajC; preprotein translocase, YajC subunit, putative K03210 yajC; preprotein translocase subunit YajC
D RD1_1455 oxaA; inner membrane protein oxaA, putative K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RD1_3255 twin-arginine translocation protein, TatA/E family, putative K03116 tatA; sec-independent protein translocase protein TatA
D RD1_3254 tatB; Sec-independent protein translocase protein tatB-like protein, putative K03117 tatB; sec-independent protein translocase protein TatB
D RD1_3253 tatC; Sec-independent protein translocase TatC, putative K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:rde02042]
D RD1_3092 CBS domain protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
C 02022 Two-component system [BR:rde02022]
D RD1_2641 phoR; phosphate regulon sensor protein, putative K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D RD1_2648 phoB; phosphate regulon transcriptional regulatory protein PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D RD1_2250 sensor histidine kinase, putative K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D RD1_0551 petR; DNA-binding response regulator PetR, putative K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D RD1_3666 torS; sensor protein TorS K07647 torS; two-component system, OmpR family, sensor histidine kinase TorS [EC:2.7.13.3]
D RD1_3665 torR; response regulator TorR, putative K07772 torR; two-component system, OmpR family, torCAD operon response regulator TorR
D RD1_2944 two-component sensor protein, putative K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
D RD1_2945 tctD; DNA-binding response regulator, putative K07774 tctD; two-component system, OmpR family, response regulator TctD
D RD1_1378 chvG; sensor histidine kinase ChvG, putative K14980 chvG; two-component system, OmpR family, sensor histidine kinase ChvG [EC:2.7.13.3]
D RD1_1377 chvI; DNA-binding response regulator ChvI, putative K14981 chvI; two-component system, OmpR family, response regulator ChvI
D RD1_2811 degU; transcription regulatory protein degU, putative K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL
D RD1_2810 degS; sensor protein degS K02480 K02480; two-component system, NarL family, sensor kinase [EC:2.7.13.3]
D RD1_2764 ntrB; nitrogen regulation protein NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D RD1_2763 ntrC; nitrogen regulation protein K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D RD1_2762 ntrY; nitrogen regulation protein ntrY, putative K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D RD1_2761 ntrX; nitrogen assimilation regulatory protein K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX
D RD1_2265 dctB; C4-dicarboxylate transport sensor protein dctB K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
D RD1_3059 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D RD1_3058 cheY; chemotaxis protein CheY, putative K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D RD1_3062 cheY; chemotaxis response regulator CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D RD1_2244 cheB; chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D RD1_3107 probable regulator protein containing CheR-and CheB-like domains K13924 cheBR; two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61]
D RD1_2527 pleD; diguanylate cyclase response regulator K02488 pleD; two-component system, cell cycle response regulator [EC:2.7.7.65]
D RD1_2711 sensor kinase-like protein, putative K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3]
D RD1_2601 ctrA; transcriptional regulator CtrA K13584 ctrA; two-component system, cell cycle response regulator CtrA
D RD1_3086 fixJ; transcriptional regulatory protein FixJ, putative K14987 fixJ; two-component system, LuxR family, response regulator FixJ
D RD1_0461 regA; photosynthetic apparatus regulatory protein K15012 regA; two-component system, response regulator RegA
D RD1_4173 nasS; nitrate transport ATP-binding protein K22067 nasS; two-component system, oxyanion-binding sensor
D RD1_4174 nasT; response regulator NasT K07183 nasT; two-component system, response regulator / RNA-binding antiterminator
C 02035 Bacterial motility proteins [BR:rde02035]
D RD1_3059 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D RD1_3060 cheW; chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D RD1_2245 cheD; chemotaxis protein CheD, putative K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D RD1_3061 cheR; chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D RD1_2244 cheB; chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D RD1_3107 probable regulator protein containing CheR-and CheB-like domains K13924 cheBR; two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61]
D RD1_3058 cheY; chemotaxis protein CheY, putative K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D RD1_3062 cheY; chemotaxis response regulator CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D RD1_3582 mcpA; methyl-accepting chemotaxis protein McpA K03406 mcp; methyl-accepting chemotaxis protein
D RD1_2161 mcp; methyl-accepting chemotaxis protein, putative K03406 mcp; methyl-accepting chemotaxis protein
D RD1_2513 mcpA; methyl-accepting chemotaxis protein McpA K03406 mcp; methyl-accepting chemotaxis protein
D RD1_2605 methyl-accepting chemotaxis protein, putative K03406 mcp; methyl-accepting chemotaxis protein
D RD1_0251 fliI; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D RD1_0265 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D RD1_0256 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D RD1_0150 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D RD1_0149 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D RD1_0151 flhB; flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D RD1_2558 fliG; flagellar motor switch protein FliG, putative K02410 fliG; flagellar motor switch protein FliG
D RD1_2838 conserved hypothetical protein K02416 fliM; flagellar motor switch protein FliM
D RD1_0266 fliN; flagellar motor switch protein FliN, putative K02417 fliN; flagellar motor switch protein FliN
D RD1_0268 fliF; flagellar M-ring protein FliF, putative K02409 fliF; flagellar M-ring protein FliF
D RD1_0577 flgI; flagellar P-ring protein FlgI K02394 flgI; flagellar P-ring protein FlgI
D RD1_0259 flgA; flagella basal body P-ring formation protein FlgA, putative K02386 flgA; flagellar basal body P-ring formation protein FlgA
D RD1_0260 flgH; flagellar L-ring protein FlgH, putative K02393 flgH; flagellar L-ring protein FlgH
D RD1_0270 fliL; flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL
D RD1_0261 hypothetical protein K02415 fliL; flagellar protein FliL
D RD1_0255 fliE; flagellar hook-basal body complex protein, putative K02408 fliE; flagellar hook-basal body complex protein FliE
D RD1_0163 flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D RD1_0253 flgB; flagellar basal-body rod protein FlgB, putative K02387 flgB; flagellar basal-body rod protein FlgB
D RD1_0254 flgC; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D RD1_0164 flgD; flagellar basal-body rod modification protein, putative K02389 flgD; flagellar basal-body rod modification protein FlgD
D RD1_0257 flgF; flagellar basal-body rod protein FlgF, putative K02391 flgF; flagellar basal-body rod protein FlgF
D RD1_0258 flgG; flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D RD1_0162 cheL; chemotactic signal-response protein, putative K02395 flgJ; peptidoglycan hydrolase FlgJ
D RD1_0581 flgE; flagellar hook protein FlgE, putative K02390 flgE; flagellar hook protein FlgE
D RD1_0580 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D RD1_0578 flgL; flagellar hook-associated protein K02397 flgL; flagellar hook-associated protein 3 FlgL
D RD1_0160 hypothetical protein K02406 fliC; flagellin
D RD1_0273 motA; chemotaxis MotA protein K02556 motA; chemotaxis protein MotA
D RD1_3382 conserved hypothetical protein K02557 motB; chemotaxis protein MotB
D RD1_0583 motB; chemotaxis protein MotB, putative K02557 motB; chemotaxis protein MotB
D RD1_2122 pilus assembly domain protein K02279 cpaB; pilus assembly protein CpaB
D RD1_2120 type II/III secretion system protein, putative K02280 cpaC; pilus assembly protein CpaC
D RD1_2117 conserved hypothetical protein K02282 cpaE; pilus assembly protein CpaE
D RD1_2116 type II/IV secretion system protein, putative K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:rde04812]
D RD1_1209 mreB; rod shape-determining protein, putative K03569 mreB; rod shape-determining protein MreB and related proteins
D RD1_3348 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D RD1_3349 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D RD1_0430 parA; chromosome partitioning protein ParA K03496 parA; chromosome partitioning protein
D RD1_C0016 parA; partition protein ParA K03496 parA; chromosome partitioning protein
D RD1_1299 possible chromosome partitioning protein K03496 parA; chromosome partitioning protein
D RD1_B0048 rep; putative replication protein K03496 parA; chromosome partitioning protein
D RD1_A0021 RC102 K03496 parA; chromosome partitioning protein
D RD1_A0072 plasmid stabilization protein, putative K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RD1_0429 parB; chromosome partitioning protein parB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RD1_A0023 RC101 K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RD1_B0047 chromosome partitioning protein, putative K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:rde04147]
D RD1_3696 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D RD1_2270 fda; fructose-bisphosphate aldolase, class I K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D RD1_3142 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D RD1_2880 gap; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D RD1_2984 gap; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D RD1_3008 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D RD1_1007 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D RD1_2067 renal dipeptidase family protein, putative K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D RD1_0772 groL; chaperonin GroEL protein, putative K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RD1_3516 groL1; 60 kDa chaperonin 1, putative K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RD1_0378 dnaK; chaperone protein DnaK, putative K04043 dnaK; molecular chaperone DnaK
D RD1_2720 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RD1_3716 gnl; gluconolactonase, putative K01053 gnl; gluconolactonase [EC:3.1.1.17]
D RD1_0868 gnl; gluconolactonase, putative K01053 gnl; gluconolactonase [EC:3.1.1.17]
D RD1_2713 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D RD1_1396 tufA; translation elongation factor Tu K02358 tuf; elongation factor Tu
D RD1_4012 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D RD1_0932 HIT-like protein, putative K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D RD1_0546 fadD; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RD1_0702 putative AMP-binding enzyme K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RD1_2849 AMP-binding domain protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RD1_2378 sbp; selenium binding protein K17285 SELENBP1; methanethiol oxidase [EC:1.8.3.4]
D RD1_0201 bktB; beta-ketothiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RD1_3394 phbA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RD1_0025 thiolase, N-terminal domain K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RD1_3972 fadA; fatty acid oxidation complex beta subunit K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RD1_0465 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D RD1_1433 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D RD1_1116 adk-2; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D RD1_2373 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D RD1_2148 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D RD1_1591 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D RD1_0417 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D RD1_3100 hydA; dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D RD1_2404 hydA; D-hydantoinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D RD1_3653 fahA; fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2]
D RD1_2875 glgB; 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D RD1_2883 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D RD1_1497 glutamine synthetase, putative K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RD1_1894 glutamine synthetase, putative K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RD1_1892 glutamine synthetase, putative K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RD1_2173 ipuC; gamma-glutamylisopropylamide synthetase, putative K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RD1_2569 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RD1_2749 hemB; delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D RD1_1830 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D RD1_0944 pcd; pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D RD1_0197 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D RD1_3633 serA; D-3-phosphoglycerate dehydrogenase, putative K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D RD1_0655 purH; bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D RD1_1603 lpdA; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RD1_2995 lpdA; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RD1_3670 pyridine nucleotide-disulfide oxidoreductase, putative K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RD1_1387 etfA; electron transfer flavoprotein, alpha subunit K03522 fixB; electron transfer flavoprotein alpha subunit
D RD1_1787 gill; glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]
D RD1_2722 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D RD1_2961 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D RD1_1234 outer membrane lipoprotein K03098 APOD; apolipoprotein D and lipocalin family protein
D RD1_2522 hypothetical protein K03098 APOD; apolipoprotein D and lipocalin family protein
C 02048 Prokaryotic defense system [BR:rde02048]
D RD1_4055 hsdR; type I restriction-modification system endonuclease, putative K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D RD1_2235 type I restriction enzyme subunit, putative K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D RD1_2234 type I restriction enzyme specificity subunit, putative K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D RD1_4054 type I restriction-mod K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D RD1_2233 type I restriction enzyme methyltransferase subunit, putative K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D RD1_4053 hsdM; type I restriction-modification system DNA methylase, putative K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D RD1_0298 ccrM; modification methylase K13581 ccrM; modification methylase [EC:2.1.1.72]
D RD1_C0014 DNA-cytosine methyltransferase, putative K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D RD1_A0026 conserved domain protein K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
D RD1_A0025 vagC; virulence associated protein, putative K18829 mvpT; antitoxin VapB
D RD1_A0079 conserved hypothetical protein K19686 vapC; ribonuclease VapC [EC:3.1.-.-]
D RD1_A0078 rpsC; 30S ribosomal protein S3, putative K19687 vapB; antitoxin VapB
D RD1_3348 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D RD1_1209 mreB; rod shape-determining protein, putative K03569 mreB; rod shape-determining protein MreB and related proteins
D RD1_1393 parC; DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D RD1_2057 parE; DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D RD1_1219 gltX; glutamyl-tRNA synthetase, putative K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RD1_3218 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RD1_3890 conserved hypothetical protein K09159 cptB; antitoxin CptB
D RD1_2698 nifS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RD1_0802 nifS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RD1_0798 conserved hypothetical protein K19169 dndB; DNA sulfur modification protein DndB
D RD1_0799 conserved domain protein K19170 dndC; DNA sulfur modification protein DndC
D RD1_0806 hypothetical protein K19171 dndD; DNA sulfur modification protein DndD
D RD1_0800 hypothetical protein K19171 dndD; DNA sulfur modification protein DndD
D RD1_0801 hypothetical protein K19172 dndE; DNA sulfur modification protein DndE
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels [BR:rde04040]
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules [BR:rde04090]
C 01504 Antimicrobial resistance genes [BR:rde01504]
D RD1_3936 tetA; tetracycline resistance protein K08151 tetA; MFS transporter, DHA1 family, tetracycline resistance protein
D RD1_4115 transcriptional regulator, putative K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D RD1_2534 acrE; RND efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D RD1_3422 efflux transporter, RND family, MFP subunit, putative K03585 acrA; membrane fusion protein, multidrug efflux system
D RD1_2533 acrF; RND multidrug efflux transporter protein K18138 acrB; multidrug efflux pump
D RD1_2304 hmrR; HTH-type transcriptional regulator hmrR, putative K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D RD1_1742 type I secretion outer membrane protein, TolC family, putative K12340 tolC; outer membrane protein
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:rde00537]
D RD1_2067 renal dipeptidase family protein, putative K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:rde03100]
D RD1_0729 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RD1_0994 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RD1_1257 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RD1_2688 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RD1_0233 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RD1_1466 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RD1_2248 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D RD1_2830 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D RD1_1853 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D RD1_3440 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D RD1_2535 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RD1_3378 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RD1_2717 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RD1_1972 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RD1_1810 tRNA-His K14226 tRNA-His; tRNA His
D RD1_0728 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D RD1_2512 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RD1_2574 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RD1_0066 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RD1_2788 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RD1_1971 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RD1_0812 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D RD1_1285 tRNA-Met K14230 tRNA-Met; tRNA Met
D RD1_1148 tRNA-Met K14230 tRNA-Met; tRNA Met
D RD1_2251 tRNA-Met K14230 tRNA-Met; tRNA Met
D RD1_1844 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D RD1_3195 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RD1_3159 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RD1_2669 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RD1_3463 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RD1_3068 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RD1_2301 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RD1_1063 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RD1_2227 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RD1_4010 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D RD1_3566 pseudogene K14236 tRNA-Tyr; tRNA Tyr
D RD1_2833 tRNA-Val K14237 tRNA-Val; tRNA Val
D RD1_0717 tRNA-Val K14237 tRNA-Val; tRNA Val
D RD1_0727 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RD1_0730 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RD1_0731 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RD1_2280 sRNA K15035 ssrA; transfer-messenger RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D RD1_1109 idnO; gluconate 5-dehydrogenase K00046 idnO; gluconate 5-dehydrogenase [EC:1.1.1.69]
D RD1_2523 3-hydroxyacyl-CoA dehydrogenase, putative K27497 K27497; carnitine 3-dehydrogenase / betainyl-CoA thioesterase [EC:1.1.1.108 3.1.2.33]
D RD1_1048 idnD; L-idonate 5-dehydrogenase, putative K00098 idnD; L-idonate 5-dehydrogenase [EC:1.1.1.264]
D RD1_1108 idnD; L-idonate 5-dehydrogenase, putative K00098 idnD; L-idonate 5-dehydrogenase [EC:1.1.1.264]
D RD1_3808 hisD; histidinol dehydrogenase K15509 hpsN; sulfopropanediol 3-dehydrogenase [EC:1.1.1.308]
D RD1_3948 hisD; histidinol dehydrogenase K15509 hpsN; sulfopropanediol 3-dehydrogenase [EC:1.1.1.308]
D RD1_0511 dkgB; 2,5-diketo-D-gluconic acid reductase B, putative K06222 dkgB; 2,5-diketo-D-gluconate reductase B [EC:1.1.1.346]
D RD1_3631 glpD; glycerol-3-phosphate dehydrogenase K21054 eryB; D-erythritol 1-phosphate dehydrogenase [EC:1.1.1.402]
D RD1_0683 conserved hypothetical protein K22025 denD; D-erythronate 2-dehydrogenase [EC:1.1.1.410]
D RD1_3786 mmsB; 3-hydroxyisobutyrate dehydrogenase, putative K08319 ltnD; L-threonate 2-dehydrogenase [EC:1.1.1.411]
D RD1_3788 probable NADH-dependent dyhydrogenase K23244 apsD; D-apiose dehydrogenase [EC:1.1.1.420]
D RD1_2311 oxidoreductase, putative K26057 smoB; 6-dehydroglucose reductase [EC:1.1.1.432]
D RD1_2633 glucose dehydrogenase, putative K21430 yliI; aldose sugar dehydrogenase [EC:1.1.5.-]
D RD1_2398 gap; glyceraldehyde-3-phosphate dehydrogenase K25224 gapdh; glyceraldehyde-3-phosphate dehydrogenase (arsenate-transferring) [EC:1.2.1.107]
D RD1_2974 coxS; carbon monoxide dehydrogenase, small subunit K03518 coxS; aerobic carbon-monoxide dehydrogenase small subunit [EC:1.2.5.3]
D RD1_2972 coxM; carbon monoxide dehydrogenase, medium subunit K03519 coxM; aerobic carbon-monoxide dehydrogenase medium subunit [EC:1.2.5.3]
D RD1_1758 dehydrogenase, putative K03520 coxL; aerobic carbon-monoxide dehydrogenase large subunit [EC:1.2.5.3]
D RD1_2973 coxL; carbon monoxide dehydrogenase, large subunit K03520 coxL; aerobic carbon-monoxide dehydrogenase large subunit [EC:1.2.5.3]
D RD1_3230 ferredoxin/flavodoxin oxidoreductase family protein, putative K04090 E1.2.7.8; indolepyruvate ferredoxin oxidoreductase [EC:1.2.7.8]
D RD1_0957 fadH; 2,4-dienoyl-CoA reductase K00219 fadH; 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34]
D RD1_1152 pqqC; coenzyme PQQ biosynthesis protein C K06137 pqqC; pyrroloquinoline-quinone synthase [EC:1.3.3.11]
D RD1_A0088 iorA; isoquinoline 1-oxidoreductase K07302 iorA; isoquinoline 1-oxidoreductase subunit alpha [EC:1.3.99.16]
D RD1_0246 iorA; isoquinoline 1-oxidoreductase, alpha subunit K07302 iorA; isoquinoline 1-oxidoreductase subunit alpha [EC:1.3.99.16]
D RD1_A0087 isoquinoline 1-oxidoreductase K07303 iorB; isoquinoline 1-oxidoreductase subunit beta [EC:1.3.99.16]
D RD1_0247 iorB; isoquinoline 1-oxidoreductase, beta subunit K07303 iorB; isoquinoline 1-oxidoreductase subunit beta [EC:1.3.99.16]
D RD1_0281 dehydrogenase, putative K04940 odh; opine dehydrogenase [EC:1.5.1.28]
D RD1_2189 oxidoreductase, putative K22551 hpbA; N-methyl-L-proline demethylase [EC:1.5.3.-]
D RD1_3404 electron transfer flavoprotein-ubiquinone oxidoreductase, putative K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1]
D RD1_2239 conserved hypothetical protein K18208 RNLS; renalase [EC:1.6.3.5]
D RD1_1041 qor; quinone oxidoreductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D RD1_3439 oxidoreductase, putative K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D RD1_1040 alcohol dehydrogenase, zinc-containing, putative K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D RD1_4096 oxidoreductase, putative K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D RD1_0596 msrA; peptide methionine sulfoxide reductase, putative K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D RD1_0419 msrA-1; methionine-S-sulfoxide reductase, putative K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D RD1_0597 msrB; peptide methionine sulfoxide reductase, putative K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D RD1_1937 gst; glutathione S-transferase, putative K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-]
D RD1_1334 conserved hypothetical protein K07393 ECM4; glutathionyl-hydroquinone reductase [EC:1.8.5.7]
D RD1_0725 conserved hypothetical protein K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-]
D RD1_3047 aox; alternative oxidase K17893 AOX1; ubiquinol oxidase [EC:1.10.3.11]
D RD1_3000 bcp; bacterioferritin comigratory protein K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D RD1_0634 antioxidant, AhpC/Tsa family, putative K24158 prx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D RD1_0006 conserved hypothetical protein K22342 dmmA; dimethylamine monooxygenase subunit A [EC:1.14.13.238]
D RD1_0005 vanB; vanillate O-demethylase oxidoreductase, putative K22343 dmmB; dimethylamine monooxygenase subunit B [EC:1.14.13.238]
D RD1_0004 conserved hypothetical protein K22344 dmmC; dimethylamine monooxygenase subunit C [EC:1.14.13.238]
D RD1_2310 ssuD; methanesulfonate sulfonatase K26058 smoC; sulfoquinovose monooxygenase [EC:1.14.14.181]
D RD1_2969 fpr; ferredoxin--NADP reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D RD1_1150 pqqE; coenzyme PQQ biosynthesis protein E K06139 pqqE; PqqA peptide cyclase [EC:1.21.98.4]
D RD1_3250 pcm; protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D RD1_1741 pcm; protein-L-isoaspartate O-methyltransferase, putative K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D RD1_2296 cfa; cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D RD1_2959 maa; maltose O-acetyltransferase K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79]
D RD1_3492 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III, putative K16872 E2.3.1.207; beta-ketodecanoyl-[acyl-carrier-protein] synthase [EC:2.3.1.207]
D RD1_3917 cutE; apolipoprotein N-acyltransferase, putative K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D RD1_2655 acyltransferase K22617 olsA; lyso-ornithine lipid O-acyltransferase [EC:2.3.1.270]
D RD1_2623 beta-ketoacyl synthase family protein K14660 nodE; nodulation protein E [EC:2.3.1.-]
D RD1_2037 acetyltransferase, putative K24217 mnaT; L-amino acid N-acyltransferase [EC:2.3.1.-]
D RD1_2852 aat; leucyl/phenylalanyl-tRNA--protein transferase, putative K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D RD1_2805 ate; arginine-tRNA-protein transferase, putative K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29]
D RD1_2656 conserved hypothetical protein K22310 olsB; L-ornithine Nalpha-acyltransferase [EC:2.3.2.30]
D RD1_3150 conserved hypothetical protein K22310 olsB; L-ornithine Nalpha-acyltransferase [EC:2.3.2.30]
D RD1_3501 lgt; prolipoprotein diacylglyceryl transferase, putative K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D RD1_1552 nosX; nitrous-oxide reductase protein nosX, putative K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D RD1_0745 yihV; sugar kinase yihV, putative K18478 yihV; sulfofructose kinase [EC:2.7.1.184]
D RD1_3634 FGGY family of carbohydrate kinases K00862 eryA; erythritol kinase (D-erythritol 1-phosphate-forming) [EC:2.7.1.215]
D RD1_3785 conserved domain protein K21948 otnK; 3-dehydrotetronate 4-kinase [EC:2.7.1.217]
D RD1_2802 glnE; Glutamate-ammonia-ligase adenylyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D RD1_1145 conserved hypothetical protein K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D RD1_3136 conserved hypothetical protein K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108]
D RD1_1379 hprK; HPr kinase/phosphorylase K06023 hprK; HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-]
D RD1_3526 hydrolase, alpha/beta fold family K19311 lipV; lipase [EC:3.1.1.-]
D RD1_2718 conserved hypothetical protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D RD1_3335 conserved hypothetical protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D RD1_2092 thioesterase family domain protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D RD1_1448 phosphoglycerate mutase, putative K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D RD1_2022 betC-1; choline sulfatase K01133 betC; choline-sulfatase [EC:3.1.6.6]
D RD1_3468 conserved hypothetical protein K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D RD1_4011 conserved hypothetical protein K01174 nuc; micrococcal nuclease [EC:3.1.31.1]
D RD1_3489 hydrolase, putative K01175 ybfF; esterase [EC:3.1.-.-]
D RD1_1278 dacA; D-alanyl-D-alanine carboxypeptidase family protein K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4]
D RD1_1998 N-acetylmuramoyl-L-alanine amidase, putative K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D RD1_4147 ampD; N-acetyl-anhydromuramyl-L-alanine amidase, putative K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D RD1_1337 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D RD1_1338 def; peptide deformylase, putative K01462 PDF; peptide deformylase [EC:3.5.1.88]
D RD1_2363 conserved hypothetical protein K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D RD1_0395 hydrolase, carbon-nitrogen family, putative K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128]
D RD1_2007 atzB; hydroxydechloroatrazine ethylaminohydrolase, putative K18456 E3.5.4.32; 8-oxoguanine deaminase [EC:3.5.4.32]
D RD1_0353 moxR; methanol dehydrogenase regulator moxR, putative K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D RD1_0871 moxR; MoxR-like ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D RD1_0529 moxR; MoxR-like ATPase, putative K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D RD1_1713 acyl-CoA dehydrogenase, C-terminal domain K19966 acdDPN7; 3-sulfinopropanoyl-CoA desulfinase [EC:3.13.1.4]
D RD1_3784 class II aldolase, putative K22130 otnC; 3-dehydro-4-phosphotetronate decarboxylase [EC:4.1.1.104]
D RD1_2890 threonine aldolase K18425 dhaa; 3-hydroxy-D-aspartate aldolase [EC:4.1.3.41]
D RD1_0675 garD; D-galactarate dehydratase, putative K26399 K26399; arabinonate dehydratase [EC:4.2.1.5]
D RD1_0613 caiD; carnitinyl-CoA dehydratase K08299 caiD; crotonobetainyl-CoA hydratase [EC:4.2.1.149]
D RD1_3473 hypothetical protein K01751 E4.3.1.15; diaminopropionate ammonia-lyase [EC:4.3.1.15]
D RD1_3888 conserved hypothetical protein K02431 fucU; L-fucose mutarotase [EC:5.1.3.29]
D RD1_3738 fucU; fucose operon FucU protein, putative K02431 fucU; L-fucose mutarotase [EC:5.1.3.29]
D RD1_3873 conserved hypothetical protein K18910 dpe; D-psicose/D-tagatose/L-ribulose 3-epimerase [EC:5.1.3.30 5.1.3.31]
D RD1_3076 conserved hypothetical protein K03534 rhaM; L-rhamnose mutarotase [EC:5.1.3.32]
D RD1_3626 conserved hypothetical protein K21909 eryC; D-erythrulose 1-phosphate 3-epimerase [EC:5.1.3.38]
D RD1_3625 tpiA; triosephosphate isomerase K21910 eryH; L-erythrulose 1-phosphate isomerase [EC:5.3.1.33]
D RD1_3624 rpiB; ribose-5-phosphate isomerase B, putative K21911 eryI; D-erythrulose 4-phosphate isomerase [EC:5.3.1.34]
D RD1_3783 conserved hypothetical protein K22131 otnI; 2-dehydrotetronate isomerase [EC:5.3.1.35]
D RD1_0350 conserved hypothetical protein K22131 otnI; 2-dehydrotetronate isomerase [EC:5.3.1.35]
D RD1_4250 glnT; glutamine synthetase III K01949 gmaS; glutamate---methylamine ligase [EC:6.3.4.12]
D RD1_1276 rdxI; RdxI protein K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9]
C 99981 Carbohydrate metabolism
D RD1_0950 sfsA; sugar fermentation stimulation protein K06206 sfsA; sugar fermentation stimulation protein A
D RD1_3668 torT; periplasmic protein TorT K11930 torT; periplasmic protein TorT
D RD1_0096 acetoin utilization protein, putative K04768 acuC; acetoin utilization protein AcuC
D RD1_0073 conserved hypothetical protein K18928 lldE; L-lactate dehydrogenase complex protein LldE
D RD1_0072 4Fe-4S binding domain protein, putative K18929 lldF; L-lactate dehydrogenase complex protein LldF
D RD1_0071 conserved hypothetical protein K00782 lldG; L-lactate dehydrogenase complex protein LldG
C 99982 Energy metabolism
D RD1_3410 fdhD; formate dehydrogenase accessory protein FdhD, putative K02379 fdhD; FdhD protein
D RD1_1925 fdx; ferredoxin VI K04755 fdx; ferredoxin, 2Fe-2S
D RD1_1824 fdxA; ferredoxin II K05524 fdxA; ferredoxin
D RD1_1559 norD; nitric oxide reductase D protein K02448 norD; nitric oxide reductase NorD protein
D RD1_1558 norE; NorE protein K02164 norE; nitric oxide reductase NorE protein
D RD1_1560 norQ; denitrification regulatory protein nirQ K04748 norQ; nitric oxide reductase NorQ protein
D RD1_1388 etfB; electron transfer flavoprotein, beta subunit K03521 fixA; electron transfer flavoprotein beta subunit
D RD1_1567 nirC; cytochrome c (c55X) K19344 nirC; cytochrome c55X
D RD1_1568 nirF; cytochrome cd1 K19345 nirF; protein NirF
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D RD1_0046 conserved hypothetical protein K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
D RD1_2345 conserved hypothetical protein K07027 K07027; glycosyltransferase 2 family protein
D RD1_0570 hypothetical protein K07027 K07027; glycosyltransferase 2 family protein
C 99987 Cofactor metabolism
D RD1_3828 cobW; cobalamin biosynthesis protein CobW K02234 cobW; cobalamin biosynthesis protein CobW
D RD1_0473 conserved hypothetical protein K02498 hemY; HemY protein
D RD1_1572 nirJ; nitrite reductase heme biosynthesis J protein, putative K24868 nirJ; heme d1 biosynthesis protein
D RD1_0202 ubiB; ubiquinone biosynthesis protein UbiB K03688 ubiB; ubiquinone biosynthesis protein
D RD1_3408 mobB; molybdopterin-guanine dinucleotide biosynthesis protein B K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein
D RD1_0124 bchO; magnesium-chelatase 30 kDa subunit K06049 bchO; magnesium chelatase accessory protein
D RD1_1038 conserved hypothetical protein K18587 COQ9; ubiquinone biosynthesis protein COQ9
D RD1_2770 conserved hypothetical protein K18588 COQ10; coenzyme Q-binding protein COQ10
C 99988 Secondary metabolism
D RD1_1216 conserved hypothetical protein K03932 lpqC; polyhydroxybutyrate depolymerase
D RD1_0968 NADPH-dependent FMN reductase domain protein K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone)
C 99999 Others
D RD1_0545 glyoxylase family protein K15975 K15975; glyoxalase family protein
D RD1_A0098 putative dioxygenase K15975 K15975; glyoxalase family protein
D RD1_1878 DoxX subfamily protein, putative K15977 K15977; putative oxidoreductase
D RD1_3175 phospholipase/carboxylesterase family protein K06999 K06999; phospholipase/carboxylesterase
D RD1_A0097 RC150 K06999 K06999; phospholipase/carboxylesterase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D RD1_1229 cspA; cold shock protein CspA K03704 cspA; cold shock protein
D RD1_1876 y4cH; cold shock family protein-related protein, putative K03704 cspA; cold shock protein
D RD1_3197 cold shock protein K03704 cspA; cold shock protein
D RD1_1232 cspA; cold shock protein CspA K03704 cspA; cold shock protein
D RD1_1402 cold shock protein CspA-related protein, putative K03704 cspA; cold shock protein
C 99974 Translation
D RD1_1818 conserved hypothetical protein K07577 K07577; putative mRNA 3-end processing factor
C 99975 Protein processing
D RD1_0206 conserved hypothetical protein K03668 hslJ; heat shock protein HslJ
D RD1_1279 clpS; ATP-dependent Clp protease, putative K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D RD1_3049 tig; trigger factor (TF), putative K03545 tig; trigger factor
D RD1_0726 conserved hypothetical protein K17247 msrQ; methionine sulfoxide reductase heme-binding subunit
D RD1_3803 ureE; urease accessory protein UreE K03187 ureE; urease accessory protein
D RD1_3804 ureF; urease accessory protein UreF K03188 ureF; urease accessory protein
D RD1_3805 ureG; urease accessory protein UreG K03189 ureG; urease accessory protein
D RD1_3792 ureD; urease accessory protein UreD K03190 ureD; urease accessory protein
D RD1_0933 smpB; SsrA-binding protein, putative K03664 smpB; SsrA-binding protein
D RD1_1193 Mg chelatase-related protein K07391 comM; magnesium chelatase family protein
D RD1_4009 proteasome-type protease, putative K07395 K07395; putative proteasome-type protease
D RD1_2976 xanthine dehydrogenase accessory factor, putative K07402 xdhC; xanthine dehydrogenase accessory factor
D RD1_4070 xdhC; xanthine dehydrogenase accessory factor K07402 xdhC; xanthine dehydrogenase accessory factor
C 99976 Replication and repair
D RD1_3690 radC; DNA repair protein RadC K03630 radC; DNA repair protein RadC
D RD1_0663 RmuC domain protein K09760 rmuC; DNA recombination protein RmuC
D RD1_3448 conserved hypothetical protein K07459 ybjD; putative ATP-dependent endonuclease of the OLD family
D RD1_1191 conserved hypothetical protein K07460 yraN; putative endonuclease
D RD1_2132 dprA; DNA processing protein DprA, putative K04096 smf; DNA processing protein
D RD1_1439 ATPase, AAA family protein, putative K07478 ycaJ; putative ATPase
D RD1_A0066 tnp; transposon resolvase K14060 pinR; putative DNA-invertase from lambdoid prophage Rac
D RD1_2650 transposase, putative K07482 K07482; transposase, IS30 family
D RD1_3456 conserved hypothetical protein K07483 K07483; transposase
D RD1_0262 transposase, putative K07483 K07483; transposase
D RD1_3457 transposase, putative K07497 K07497; putative transposase
D RD1_0158 integrase, catalytic domain, putative K07497 K07497; putative transposase
D RD1_3452 transposase, putative K07497 K07497; putative transposase
D RD1_4048 transposase, putative K07497 K07497; putative transposase
D RD1_0339 transposase, putative K07497 K07497; putative transposase
D RD1_0157 inverted repeat region K07497 K07497; putative transposase
D RD1_0797 transposase, putative K07497 K07497; putative transposase
D RD1_0263 inverted repeat region K07497 K07497; putative transposase
D RD1_3450 inverted repeat region K07497 K07497; putative transposase
D RD1_1851 inverted repeat region K07497 K07497; putative transposase
D RD1_1143 inverted repeat region K07497 K07497; putative transposase
D RD1_3449 integrase, catalytic domain, putative K07497 K07497; putative transposase
D RD1_1852 integrase, catalytic domain, putative K07497 K07497; putative transposase
D RD1_1144 integrase, catalytic domain, putative K07497 K07497; putative transposase
D RD1_2246 integrase, catalytic domain, putative K07497 K07497; putative transposase
D RD1_3380 integrase catalytic domain, putative K07497 K07497; putative transposase
D RD1_3063 integrase, catalytic domain, putative K07497 K07497; putative transposase
D RD1_3065 inverted repeat region K07497 K07497; putative transposase
D RD1_3381 transposase, putative K07497 K07497; putative transposase
D RD1_0276 integrase, catalytic domain, putative K07497 K07497; putative transposase
D RD1_0154 integrase, catalytic domain K07497 K07497; putative transposase
D RD1_0155 inverted repeat region K07497 K07497; putative transposase
D RD1_0264 integrase, catalytic domain, putative K07497 K07497; putative transposase
D RD1_4042 transposase, putative K07497 K07497; putative transposase
C 99979 Viral proteins
C 99998 Others
D RD1_1046 conserved hypothetical protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D RD1_2466 transport protein, putative K21990 yfdC; formate-nitrite transporter family protein
D RD1_0695 sodium:galactoside symporter family protein, putative K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family
D RD1_0638 Na(+)-linked D-alanine glycine permease K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D RD1_0547 putative sodium/bile acid symporter family protein K03453 TC.BASS; bile acid:Na+ symporter, BASS family
C 99978 Cell growth
D RD1_1934 ispZ; intracellular septation protein, putative K06190 ispZ; intracellular septation protein
D RD1_1848 site-specific DNA recombinase, putative K06400 spoIVCA; site-specific DNA recombinase
D RD1_0334 M23 peptidase domain protein, putative K22719 envC; murein hydrolase activator
C 99993 Cell motility
D RD1_3110 conserved hypothetical protein K07343 tfoX; DNA transformation protein and related proteins
C 99995 Signaling proteins
D RD1_4076 universal stress family protein, putative K14061 uspF; universal stress protein F
D RD1_4109 universal stress family protein, putative K14061 uspF; universal stress protein F
D RD1_2707 typA; GTP-binding protein TypA, putative K06207 typA; GTP-binding protein
D RD1_0691 chrR; anti-sigma factor ChrR K07167 chrR; putative transcriptional regulator
D RD1_3920 phoH; phosphate starvation inducible protein, putative K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D RD1_1113 nucleotidyltransferase, putative K07182 K07182; CBS domain-containing protein
C 99992 Structural proteins
D RD1_0940 VacJ-like lipoprotein, putative K04754 mlaA; phospholipid-binding lipoprotein MlaA
D RD1_3300 ompW; outer membrane protein W, putative K07275 ompW; outer membrane protein
D RD1_1660 AsmA family protein K07289 asmA; AsmA protein
D RD1_2955 conserved domain protein K07340 ybbJ; inner membrane protein
D RD1_3226 cycJ; cytochrome c-type biogenesis protein K02197 ccmE; cytochrome c-type biogenesis protein CcmE
D RD1_1767 cycH; cytochrome c-type biogenesis protein CycH K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D RD1_3222 cycL; cytochrome c-type biogenesis protein K02200 ccmH; cytochrome c-type biogenesis protein CcmH
C 99994 Others
D RD1_2647 phoU; phosphate transport system regulatory protein PhoU K02039 phoU; phosphate transport system protein
D RD1_1669 opgG; glucans biosynthesis protein G K03670 mdoG; periplasmic glucans biosynthesis protein
D RD1_2390 phnK; phosphonate C-P lyase system protein PhnK K05781 phnK; putative phosphonate transport system ATP-binding protein
D RD1_1548 nosD; nitrous oxide maturation protein K07218 nosD; nitrous oxidase accessory protein
D RD1_3706 monooxygenase protein, putative K07222 K07222; putative flavoprotein involved in K+ transport
D RD1_4136 monooxygenase, putative K07222 K07222; putative flavoprotein involved in K+ transport
D RD1_4188 hmuS; hemin transport protein K07225 hmuS; putative hemin transport protein
D RD1_0911 lipoprotein, putative K07231 K07231; putative iron-regulated protein
D RD1_1694 nnrS; NnrS protein, putative K07234 K07234; uncharacterized protein involved in response to NO
D RD1_1551 nosL; nitrous oxide reductase accessory protein NosL K19342 nosL; copper chaperone NosL
B
B 09194 Poorly characterized
C 99996 General function prediction only
D RD1_3246 CvpA family protein K03558 cvpA; membrane protein required for colicin V production
D RD1_0077 pqiB; paraquat-inducible protein B, putative K06192 pqiB; paraquat-inducible protein B
D RD1_1153 pqqB; coenzyme PQQ biosynthesis protein B K06136 pqqB; pyrroloquinoline quinone biosynthesis protein B
D RD1_1151 pqqD; coenzyme PQQ synthesis protein D K06138 pqqD; pyrroloquinoline quinone biosynthesis protein D
D RD1_3496 csaA; chaperonin CsaA, putative K06878 K06878; tRNA-binding protein
D RD1_4240 globin-like protein, putative K06886 glbN; hemoglobin
D RD1_0766 serine protease, putative K07001 K07001; NTE family protein
D RD1_2736 phospholipase patatin-like family, putative K07001 K07001; NTE family protein
D RD1_1960 pyrimidine 5'-nucleotidase, putative K07025 K07025; putative hydrolase of the HAD superfamily
D RD1_2696 sufB; FeS assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB
D RD1_2692 sufD; FeS assembly protein SufD, putative K09015 sufD; Fe-S cluster assembly protein SufD
D RD1_0088 ribonuclease BN, putative K07058 K07058; membrane protein
D RD1_0443 fxsA; FxsA protein, putative K07113 fxsA; UPF0716 protein FxsA
D RD1_2256 conserved hypothetical protein K02426 sufE; cysteine desulfuration protein SufE
D RD1_0584 conserved hypothetical protein K07146 K07146; UPF0176 protein
D RD1_0851 glyoxalase family protein, putative K04750 phnB; PhnB protein
D RD1_4066 conserved hypothetical protein K03745 slyX; SlyX protein
D RD1_0075 paraquat-inducible protein A K03808 pqiA; paraquat-inducible protein A
D RD1_0076 paraquat-inducible protein A K03808 pqiA; paraquat-inducible protein A
D RD1_2073 conserved hypothetical protein K08990 ycjF; putative membrane protein
C 99997 Function unknown
D RD1_2002 membrane protein, putative K06890 K06890; uncharacterized protein
D RD1_4224 conserved hypothetical protein K06903 W; Bacteriophage baseplate protein W
D RD1_4217 conserved hypothetical protein K06907 FI; Bacteriophage tail sheath protein
D RD1_2071 conserved hypothetical protein K06918 K06918; uncharacterized protein
D RD1_3252 conserved hypothetical protein K06923 K06923; uncharacterized protein
D RD1_3563 CoA binding domain protein K06929 K06929; uncharacterized protein
D RD1_1765 conserved hypothetical protein K06938 K06938; uncharacterized protein
D RD1_0910 conserved hypothetical protein K06938 K06938; uncharacterized protein
D RD1_2107 conserved hypothetical protein K06953 K06953; uncharacterized protein
D RD1_0693 dehydrogenase, putative K06954 K06954; uncharacterized protein
D RD1_2420 btpA; photosystem I biogenesis protein, putative K06971 K06971; uncharacterized protein
D RD1_A0090 conserved hypothetical protein K06975 K06975; uncharacterized protein
D RD1_1980 X-Pro dipeptidyl-peptidase family protein, putative K06978 K06978; uncharacterized protein
D RD1_3206 conserved hypothetical protein K06987 K06987; uncharacterized protein
D RD1_0823 conserved hypothetical protein K06995 K06995; uncharacterized protein
D RD1_3174 conserved hypothetical protein K06996 K06996; uncharacterized protein
D RD1_1602 pyridoxamine 5'-phosphate oxidase family protein, putative K07006 K07006; uncharacterized protein
D RD1_2498 pyridoxamine 5'-phosphate oxidase family protein, putative K07006 K07006; uncharacterized protein
D RD1_2701 conserved hypothetical protein K07018 K07018; uncharacterized protein
D RD1_4111 immunogenic protein, putative K07080 K07080; uncharacterized protein
D RD1_1583 TRAP-type transporter, putative K07080 K07080; uncharacterized protein
D RD1_1525 immunogenic protein, putative K07080 K07080; uncharacterized protein
D RD1_3647 TRAP-type transporter, periplasmic component, putative K07080 K07080; uncharacterized protein
D RD1_0311 conserved hypothetical membrane protein K07086 K07086; uncharacterized protein
D RD1_3485 permease, putative K07089 K07089; uncharacterized protein
D RD1_0917 permease family K07089 K07089; uncharacterized protein
D RD1_2912 integral membrane protein, putative K07090 K07090; uncharacterized protein
D RD1_1642 integral membrane protein, putative K07090 K07090; uncharacterized protein
D RD1_0836 conserved hypothetical protein K07090 K07090; uncharacterized protein
D RD1_1107 membrane protein, putative K07090 K07090; uncharacterized protein
D RD1_1618 integral membrane protein, putative K07090 K07090; uncharacterized protein
D RD1_A0062 conserved hypothetical protein K07093 K07093; uncharacterized protein
D RD1_0767 conserved hypothetical protein K07093 K07093; uncharacterized protein
D RD1_0786 conserved hypothetical protein K07112 K07112; uncharacterized protein
D RD1_0787 YeeE/YedE domain protein K07112 K07112; uncharacterized protein
D RD1_1506 YeeE/YedE domain protein K07112 K07112; uncharacterized protein
D RD1_3669 conserved hypothetical protein K07112 K07112; uncharacterized protein
D RD1_1521 conserved hypothetical protein K07112 K07112; uncharacterized protein
D RD1_2159 conserved hypothetical protein K07120 K07120; uncharacterized protein
D RD1_2316 hypothetical protein K07126 K07126; uncharacterized protein
D RD1_1454 MOSC domain protein K07140 K07140; MOSC domain-containing protein
D RD1_0038 lonD; ATP-dependent protease La domain protein, putative K07157 K07157; uncharacterized protein
D RD1_3233 VWA domain containing CoxE-like protein K07161 K07161; uncharacterized protein
D RD1_1458 conserved hypothetical protein K08998 K08998; uncharacterized protein
D RD1_3196 conserved hypothetical protein K09005 K09005; uncharacterized protein
D RD1_1964 GatB/Yqey family protein K09117 K09117; uncharacterized protein
D RD1_3524 conserved hypothetical protein K09160 K09160; uncharacterized protein
D RD1_0532 coxG; carbon monoxide dehydrogenase G protein, putative K09386 K09386; uncharacterized protein
D RD1_0694 conserved hypothetical protein K09701 K09701; uncharacterized protein
D RD1_1535 conserved hypothetical protein K09740 K09740; uncharacterized protein
D RD1_1289 conserved hypothetical protein K09763 K09763; uncharacterized protein
D RD1_0321 YaiI/YqxD family protein, putative K09768 K09768; uncharacterized protein
D RD1_0468 YCII-related domain protein K09780 K09780; uncharacterized protein
D RD1_2983 conserved hypothetical protein K09781 K09781; uncharacterized protein
D RD1_0037 conserved hypothetical protein K09791 K09791; uncharacterized protein
D RD1_0980 conserved hypothetical protein K09794 K09794; uncharacterized protein
D RD1_1833 conserved hypothetical protein K09807 K09807; uncharacterized protein
D RD1_4144 conserved hypothetical protein K09822 K09822; uncharacterized protein
D RD1_0078 lipoprotein, putative K09857 K09857; uncharacterized protein
D RD1_0358 conserved hypothetical protein K09861 K09861; uncharacterized protein
D RD1_1688 conserved hypothetical protein K09862 K09862; uncharacterized protein
D RD1_0943 conserved hypothetical protein K09919 K09919; uncharacterized protein
D RD1_2079 conserved hypothetical protein K09921 K09921; uncharacterized protein
D RD1_0235 conserved hypothetical protein K09927 K09927; uncharacterized protein
D RD1_1360 conserved hypothetical protein K09928 K09928; uncharacterized protein
D RD1_1880 conserved hypothetical protein K09930 K09930; uncharacterized protein
D RD1_0184 conserved hypothetical protein K09931 K09931; uncharacterized protein
D RD1_1922 conserved hypothetical protein K09937 K09937; uncharacterized protein
D RD1_0905 conserved hypothetical protein K09947 K09947; uncharacterized protein
D RD1_1006 conserved hypothetical protein K09948 K09948; uncharacterized protein
D RD1_1734 lipoprotein, putative K09950 K09950; uncharacterized protein
D RD1_1735 conserved hypothetical protein K09950 K09950; uncharacterized protein
D RD1_2160 hypothetical protein K09964 K09964; uncharacterized protein
D RD1_3904 conserved hypothetical protein K09966 K09966; uncharacterized protein
D RD1_1633 conserved hypothetical protein K09967 K09967; uncharacterized protein
D RD1_1249 conserved hypothetical protein K09981 K09981; uncharacterized protein
D RD1_2277 conserved hypothetical protein K09985 K09985; uncharacterized protein
D RD1_0352 conserved hypothetical protein K09986 K09986; uncharacterized protein
D RD1_1043 conserved hypothetical protein K09987 K09987; uncharacterized protein
D RD1_2796 conserved hypothetical protein K09989 K09989; uncharacterized protein
D RD1_0906 conserved hypothetical protein K07338 K07338; uncharacterized protein
D RD1_0387 conserved hypothetical protein K07742 ylxR; uncharacterized protein
!
#
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 29, 2024