+D GENES KO
#
KEGG Orthology (KO) - Rothia mucilaginosa
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:rmu00010]
D RMDY18_05930 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RMDY18_04230 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D RMDY18_16120 fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D RMDY18_00820 fructose/tagatose bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RMDY18_11070 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D RMDY18_00600 glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D RMDY18_11150 glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D RMDY18_11140 3-phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D RMDY18_17340 phosphoglycerate mutase 1 K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D RMDY18_16380 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D RMDY18_08360 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D RMDY18_07900 pyruvate dehydrogenase complex, dehydrogenase (E1) component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D RMDY18_07280 pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D RMDY18_07290 pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RMDY18_10640 malate/lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D RMDY18_08320 Zn-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D RMDY18_18340 acyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RMDY18_13280 transcriptional regulator/sugar kinase K00886 ppgK; polyphosphate glucokinase [EC:2.7.1.63]
D RMDY18_17460 phosphoenolpyruvate carboxykinase K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
D RMDY18_09270 beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D RMDY18_00840 phosphotransferase system IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
C 00020 Citrate cycle (TCA cycle) [PATH:rmu00020]
D RMDY18_07110 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component K01616 kgd; multifunctional 2-oxoglutarate metabolism enzyme [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
D RMDY18_07290 pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RMDY18_02710 succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D RMDY18_02690 succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D RMDY18_16430 succinate dehydrogenase/fumarate reductase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D RMDY18_16420 succinate dehydrogenase/fumarate reductase, Fe-S protein subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D RMDY18_16460 succinate dehydrogenase/fumarate reductase, cytochrome b subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D RMDY18_16450 succinate dehydrogenase, hydrophobic anchor subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D RMDY18_16160 fumarase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D RMDY18_07450 predicted dehydrogenase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D RMDY18_17460 phosphoenolpyruvate carboxykinase K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
D RMDY18_07900 pyruvate dehydrogenase complex, dehydrogenase (E1) component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D RMDY18_07280 pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00030 Pentose phosphate pathway [PATH:rmu00030]
D RMDY18_05930 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RMDY18_10950 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D RMDY18_10970 6-phosphogluconolactonase/glucosamine-6-phosphate isomerase/deaminase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31]
D RMDY18_07920 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D RMDY18_07760 pentose-5-phosphate-3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D RMDY18_10930 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D RMDY18_10940 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D RMDY18_08610 ribose 5-phosphate isomerase RpiB K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D RMDY18_15930 phosphoribosylpyrophosphate synthetase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D RMDY18_00820 fructose/tagatose bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RMDY18_16120 fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D RMDY18_04230 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
C 00040 Pentose and glucuronate interconversions [PATH:rmu00040]
D RMDY18_05550 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D RMDY18_07760 pentose-5-phosphate-3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
C 00051 Fructose and mannose metabolism [PATH:rmu00051]
D RMDY18_00610 sugar kinase, ribokinase family K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D RMDY18_17420 phosphomannose isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D RMDY18_17430 phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D RMDY18_16470 mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D RMDY18_04230 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D RMDY18_16120 fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D RMDY18_02350 fructose-1-phosphate kinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D RMDY18_00820 fructose/tagatose bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RMDY18_11070 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D RMDY18_08610 ribose 5-phosphate isomerase RpiB K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D RMDY18_02370 phosphotransferase system, fructose-specific IIC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D RMDY18_00320 phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D RMDY18_00310 phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC K02795 manY; mannose PTS system EIIC component
D RMDY18_00300 phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID K02796 manZ; mannose PTS system EIID component
C 00052 Galactose metabolism [PATH:rmu00052]
D RMDY18_00220 galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D RMDY18_06040 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RMDY18_05550 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D RMDY18_06840 UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D RMDY18_04230 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D RMDY18_04350 beta-fructosidase K01193 INV; beta-fructofuranosidase [EC:3.2.1.26]
D RMDY18_05440 glycosidase K01182 IMA; oligo-1,6-glucosidase [EC:3.2.1.10]
D RMDY18_05450 glycosidase K01182 IMA; oligo-1,6-glucosidase [EC:3.2.1.10]
C 00053 Ascorbate and aldarate metabolism
C 00500 Starch and sucrose metabolism [PATH:rmu00500]
D RMDY18_04360 phosphotransferase system IIC component, glucose/maltose/N-acetylglucosamine-specific K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211]
D RMDY18_04350 beta-fructosidase K01193 INV; beta-fructofuranosidase [EC:3.2.1.26]
D RMDY18_05550 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D RMDY18_09270 beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D RMDY18_15810 glycosyltransferase K16150 K16150; glycogen synthase [EC:2.4.1.11]
D RMDY18_05440 glycosidase K01182 IMA; oligo-1,6-glucosidase [EC:3.2.1.10]
D RMDY18_05450 glycosidase K01182 IMA; oligo-1,6-glucosidase [EC:3.2.1.10]
D RMDY18_00840 phosphotransferase system IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D RMDY18_05480 phosphotransferase system IIC component, glucose/maltose/N-acetylglucosamine-specific K02750 glvC; alpha-glucoside PTS system EIICB component [EC:2.7.1.208 2.7.1.-]
D RMDY18_05470 metal-dependent hydrolase K06896 mapP; maltose 6'-phosphate phosphatase [EC:3.1.3.90]
D RMDY18_18150 glycosidase K01226 treC; trehalose-6-phosphate hydrolase [EC:3.2.1.93]
D RMDY18_05930 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RMDY18_00610 sugar kinase, ribokinase family K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:rmu00520]
D RMDY18_00840 phosphotransferase system IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D RMDY18_00610 sugar kinase, ribokinase family K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D RMDY18_05180 glucosamine 6-phosphate synthetase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D RMDY18_05140 phosphomannomutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D RMDY18_15940 N-acetylglucosamine-1-phosphate uridyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D RMDY18_08100 UDP-N-acetylglucosamine enolpyruvyl transferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D RMDY18_04060 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D RMDY18_13280 transcriptional regulator/sugar kinase K00886 ppgK; polyphosphate glucokinase [EC:2.7.1.63]
D RMDY18_05550 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D RMDY18_00220 galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D RMDY18_06040 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RMDY18_06840 UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D RMDY18_00320 phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D RMDY18_00310 phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC K02795 manY; mannose PTS system EIIC component
D RMDY18_00300 phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID K02796 manZ; mannose PTS system EIID component
D RMDY18_05930 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RMDY18_17420 phosphomannose isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D RMDY18_17430 phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D RMDY18_16470 mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
C 00620 Pyruvate metabolism [PATH:rmu00620]
D RMDY18_18340 acyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RMDY18_07900 pyruvate dehydrogenase complex, dehydrogenase (E1) component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D RMDY18_07280 pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D RMDY18_07290 pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RMDY18_08320 Zn-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D RMDY18_01260 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D RMDY18_01050 phosphotransacetylase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D RMDY18_08360 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D RMDY18_15480 acetyl/propionyl-CoA carboxylase, alpha subunit K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D RMDY18_18450 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D RMDY18_10640 malate/lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D RMDY18_16180 thiamine pyrophosphate-requiring enzyme K00156 poxB; pyruvate dehydrogenase (quinone) [EC:1.2.5.1]
D RMDY18_09350 FAD/FMN-containing dehydrogenase K18930 dld; D-lactate dehydrogenase
D RMDY18_07450 predicted dehydrogenase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D RMDY18_16160 fumarase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D RMDY18_17460 phosphoenolpyruvate carboxykinase K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
D RMDY18_10260 isopropylmalate/homocitrate/citramalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:rmu00630]
D RMDY18_18340 acyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RMDY18_15360 acetyl-CoA carboxylase, carboxyltransferase component K01966 PCCB; propionyl-CoA carboxylase beta chain [EC:6.4.1.3 2.1.3.15]
D RMDY18_15480 acetyl/propionyl-CoA carboxylase, alpha subunit K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D RMDY18_07210 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RMDY18_13210 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RMDY18_16590 glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RMDY18_04580 glycine cleavage system protein P K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D RMDY18_04590 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D RMDY18_07290 pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RMDY18_13770 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D RMDY18_07110 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component K01616 kgd; multifunctional 2-oxoglutarate metabolism enzyme [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
C 00640 Propanoate metabolism [PATH:rmu00640]
D RMDY18_18340 acyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RMDY18_01260 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D RMDY18_01050 phosphotransacetylase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D RMDY18_02170 pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D RMDY18_02180 pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D RMDY18_02190 pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D RMDY18_07290 pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RMDY18_15480 acetyl/propionyl-CoA carboxylase, alpha subunit K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D RMDY18_15360 acetyl-CoA carboxylase, carboxyltransferase component K01966 PCCB; propionyl-CoA carboxylase beta chain [EC:6.4.1.3 2.1.3.15]
D RMDY18_02690 succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D RMDY18_02710 succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D RMDY18_10640 malate/lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
C 00650 Butanoate metabolism [PATH:rmu00650]
D RMDY18_16430 succinate dehydrogenase/fumarate reductase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D RMDY18_16420 succinate dehydrogenase/fumarate reductase, Fe-S protein subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D RMDY18_16460 succinate dehydrogenase/fumarate reductase, cytochrome b subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D RMDY18_16450 succinate dehydrogenase, hydrophobic anchor subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D RMDY18_00860 NAD-dependent aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D RMDY18_19350 threonine dehydrogenase K18369 adh2; alcohol dehydrogenase [EC:1.1.1.-]
D RMDY18_07490 thiamine pyrophosphate-requiring enzyme K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D RMDY18_07510 acetolactate synthase, small (regulatory) subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D RMDY18_07200 alpha-acetolactate decarboxylase K01575 alsD; acetolactate decarboxylase [EC:4.1.1.5]
D RMDY18_10670 threonine dehydrogenase K00004 BDH; (R,R)-butanediol dehydrogenase / meso-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.4 1.1.1.- 1.1.1.303]
C 00660 C5-Branched dibasic acid metabolism [PATH:rmu00660]
D RMDY18_07490 thiamine pyrophosphate-requiring enzyme K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D RMDY18_07510 acetolactate synthase, small (regulatory) subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D RMDY18_07200 alpha-acetolactate decarboxylase K01575 alsD; acetolactate decarboxylase [EC:4.1.1.5]
D RMDY18_02690 succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D RMDY18_02710 succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D RMDY18_08050 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D RMDY18_08080 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D RMDY18_07660 isocitrate/isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism
D RMDY18_11070 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:rmu00190]
D RMDY18_16310 NADH dehydrogenase, FAD-containing subunit K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D RMDY18_16430 succinate dehydrogenase/fumarate reductase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D RMDY18_16420 succinate dehydrogenase/fumarate reductase, Fe-S protein subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D RMDY18_16460 succinate dehydrogenase/fumarate reductase, cytochrome b subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D RMDY18_16450 succinate dehydrogenase, hydrophobic anchor subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D RMDY18_12580 cytochrome bd-type quinol oxidase, subunit 1 K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D RMDY18_12570 cytochrome bd-type quinol oxidase, subunit 2 K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D RMDY18_12860 F0F1-type ATP synthase, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D RMDY18_12830 F0F1-type ATP synthase, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D RMDY18_12850 F0F1-type ATP synthase, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D RMDY18_12880 F0F1-type ATP synthase, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D RMDY18_12820 F0F1-type ATP synthase, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D RMDY18_12920 F0F1-type ATP synthase, subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D RMDY18_12900 F0F1-type ATP synthase, subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D RMDY18_12910 F0F1-type ATP synthase, subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D RMDY18_01470 inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D RMDY18_04150 polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D RMDY18_05130 uncharacterized conserved protein K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms
C 00720 Carbon fixation pathways in prokaryotes
C 00680 Methane metabolism [PATH:rmu00680]
D RMDY18_16590 glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RMDY18_16380 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D RMDY18_00820 fructose/tagatose bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RMDY18_16120 fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D RMDY18_04230 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D RMDY18_01260 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D RMDY18_01050 phosphotransacetylase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D RMDY18_18340 acyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RMDY18_17340 phosphoglycerate mutase 1 K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
C 00910 Nitrogen metabolism [PATH:rmu00910]
D RMDY18_04560 nitrate/nitrite transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D RMDY18_04500 nitrate reductase alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D RMDY18_04520 nitrate reductase beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D RMDY18_04550 nitrate reductase gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-]
D RMDY18_08870 NAD(P)H-nitrite reductase K00362 nirB; nitrite reductase (NADH) large subunit [EC:1.7.1.15]
D RMDY18_08850 nitrite reductase, ferredoxin subunit K00363 nirD; nitrite reductase (NADH) small subunit [EC:1.7.1.15]
D RMDY18_19020 putative multicopper oxidase K00368 nirK; nitrite reductase (NO-forming) [EC:1.7.2.1]
D RMDY18_11300 nitric oxide reductase large subunit K04561 norB; nitric oxide reductase subunit B [EC:1.7.2.5]
D RMDY18_00540 NAD-specific glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D RMDY18_07210 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RMDY18_13210 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RMDY18_16140 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:rmu00920]
D RMDY18_18310 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component K15553 ssuA; sulfonate transport system substrate-binding protein
D RMDY18_18330 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component K15554 ssuC; sulfonate transport system permease protein
D RMDY18_18300 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D RMDY18_07930 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D RMDY18_07950 cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D RMDY18_15160 homoserine acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D RMDY18_17360 cystathionine beta-lyase/cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:rmu00061]
D RMDY18_15480 acetyl/propionyl-CoA carboxylase, alpha subunit K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D RMDY18_11710 acyl carrier protein K02078 acpP; acyl carrier protein
D RMDY18_11750 acyl-carrier-protein S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D RMDY18_11730 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D RMDY18_11700 3-oxoacyl-(acyl-carrier-protein) synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D RMDY18_10770 dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RMDY18_10740 dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RMDY18_13720 long-chain acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RMDY18_14180 acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RMDY18_02240 acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:rmu00071]
D RMDY18_13720 long-chain acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RMDY18_14180 acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RMDY18_02240 acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RMDY18_08320 Zn-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:rmu00561]
D RMDY18_13860 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D RMDY18_14110 predicted sugar phosphatase of the HAD superfamily K06117 E3.1.3.21; glycerol-1-phosphatase [EC:3.1.3.21]
D RMDY18_13700 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D RMDY18_11290 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D RMDY18_15030 glycosyltransferase K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337]
C 00564 Glycerophospholipid metabolism [PATH:rmu00564]
D RMDY18_08120 glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D RMDY18_13840 glycerol-3-phosphate dehydrogenase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D RMDY18_13700 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D RMDY18_11290 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D RMDY18_15660 cytidylyltransferase K00980 tagD; glycerol-3-phosphate cytidylyltransferase [EC:2.7.7.39]
D RMDY18_00850 glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D RMDY18_14940 CDP-diglyceride synthetase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D RMDY18_14580 phosphatidylglycerophosphate synthase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D RMDY18_18070 phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism [PATH:rmu00600]
D RMDY18_04650 membrane-bound serine protease K12349 ASAH2; neutral ceramidase [EC:3.5.1.23]
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism
C 01040 Biosynthesis of unsaturated fatty acids
D RMDY18_08520 acyl-CoA thioesterase K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:rmu00230]
D RMDY18_15930 phosphoribosylpyrophosphate synthetase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D RMDY18_02950 glutamine phosphoribosylpyrophosphate amidotransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D RMDY18_02990 phosphoribosylamine-glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D RMDY18_16620 folate-dependent phosphoribosylglycinamide formyltransferase PurN K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D RMDY18_17790 phosphoribosylformylglycinamidine synthase containing synthetase domain K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3]
D RMDY18_17760 phosphoribosylformylglycinamidine synthase, PurS component K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3]
D RMDY18_17770 phosphoribosylformylglycinamidine synthase containing glutamine amidotransferase domain K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D RMDY18_02940 phosphoribosylaminoimidazole synthetase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D RMDY18_16090 phosphoribosylaminoimidazole carboxylase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D RMDY18_16100 phosphoribosylcarboxyaminoimidazole mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D RMDY18_03000 phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D RMDY18_02120 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D RMDY18_16610 AICAR transformylase/IMP cyclohydrolase PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D RMDY18_14170 adenine/guanine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D RMDY18_13430 uncharacterized conserved protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D RMDY18_01500 hypoxanthine-guanine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D RMDY18_05380 IMP dehydrogenase/GMP reductase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D RMDY18_05390 IMP dehydrogenase/GMP reductase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D RMDY18_12620 xanthosine triphosphate pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D RMDY18_05420 GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D RMDY18_09980 guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D RMDY18_09160 ribonucleotide reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RMDY18_09180 ribonucleotide reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D RMDY18_09540 guanosine polyphosphate pyrophosphohydrolase/synthetase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D RMDY18_03480 exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D RMDY18_16330 exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D RMDY18_15310 adenylate cyclase, family 3 K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D RMDY18_18760 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D RMDY18_05010 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D RMDY18_09390 diadenosine tetraphosphate (Ap4A) hydrolase K19710 E2.7.7.53; ATP adenylyltransferase [EC:2.7.7.53]
C 00240 Pyrimidine metabolism [PATH:rmu00240]
D RMDY18_09940 carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D RMDY18_09930 carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D RMDY18_09880 aspartate carbamoyltransferase, catalytic chain K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D RMDY18_09900 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D RMDY18_10590 dihydroorotate dehydrogenase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D RMDY18_00750 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D RMDY18_09960 orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D RMDY18_14970 uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D RMDY18_15460 nucleotide-binding protein implicated in inhibition of septum formation K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D RMDY18_14040 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D RMDY18_13950 cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D RMDY18_01950 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D RMDY18_09870 pyrimidine operon attenuation protein/uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D RMDY18_09160 ribonucleotide reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RMDY18_09180 ribonucleotide reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D RMDY18_17370 thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D RMDY18_12440 dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D RMDY18_04120 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D RMDY18_17530 nitroreductase K09019 rutE; 3-hydroxypropanoate dehydrogenase [EC:1.1.1.-]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:rmu00250]
D RMDY18_04250 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RMDY18_01800 L-asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D RMDY18_05620 aspartate/tyrosine/aromatic aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D RMDY18_18760 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D RMDY18_02120 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D RMDY18_09880 aspartate carbamoyltransferase, catalytic chain K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D RMDY18_00860 NAD-dependent aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D RMDY18_00540 NAD-specific glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D RMDY18_13780 NAD-dependent aldehyde dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D RMDY18_07210 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RMDY18_13210 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RMDY18_09940 carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D RMDY18_09930 carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D RMDY18_09070 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D RMDY18_17770 phosphoribosylformylglycinamidine synthase containing glutamine amidotransferase domain K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D RMDY18_05180 glucosamine 6-phosphate synthetase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D RMDY18_02950 glutamine phosphoribosylpyrophosphate amidotransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:rmu00260]
D RMDY18_17740 aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D RMDY18_04100 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RMDY18_13080 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D RMDY18_13050 homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D RMDY18_13070 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D RMDY18_16590 glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RMDY18_17340 phosphoglycerate mutase 1 K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D RMDY18_04580 glycine cleavage system protein P K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D RMDY18_04590 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D RMDY18_07290 pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RMDY18_13770 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D RMDY18_04610 L-serine deaminase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D RMDY18_16250 threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D RMDY18_08290 tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D RMDY18_08280 tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:rmu00270]
D RMDY18_07930 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D RMDY18_07950 cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D RMDY18_18590 cystathionine beta-lyase/cystathionine gamma-synthase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D RMDY18_18610 cystathionine beta-lyase/cystathionine gamma-synthase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D RMDY18_19110 methionine synthase II K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D RMDY18_11270 s-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D RMDY18_14730 nucleoside phosphorylase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D RMDY18_13430 uncharacterized conserved protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D RMDY18_01030 site-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D RMDY18_14740 LuxS protein involved in autoinducer AI2 synthesis K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D RMDY18_17740 aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D RMDY18_04100 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RMDY18_13080 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D RMDY18_15160 homoserine acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D RMDY18_17360 cystathionine beta-lyase/cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D RMDY18_15170 o-acetylhomoserine sulfhydrylase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D RMDY18_18650 o-acetylhomoserine sulfhydrylase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D RMDY18_07670 branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RMDY18_04250 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RMDY18_10640 malate/lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D RMDY18_04610 L-serine deaminase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
C 00280 Valine, leucine and isoleucine degradation [PATH:rmu00280]
D RMDY18_07670 branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RMDY18_02170 pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D RMDY18_02180 pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D RMDY18_02190 pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D RMDY18_07290 pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RMDY18_15360 acetyl-CoA carboxylase, carboxyltransferase component K01966 PCCB; propionyl-CoA carboxylase beta chain [EC:6.4.1.3 2.1.3.15]
D RMDY18_15480 acetyl/propionyl-CoA carboxylase, alpha subunit K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:rmu00290]
D RMDY18_16250 threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D RMDY18_08050 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D RMDY18_08080 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D RMDY18_07660 isocitrate/isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D RMDY18_07490 thiamine pyrophosphate-requiring enzyme K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D RMDY18_07510 acetolactate synthase, small (regulatory) subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D RMDY18_07530 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D RMDY18_18140 dihydroxy-acid dehydratase/phosphogluconate dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D RMDY18_07670 branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RMDY18_05620 aspartate/tyrosine/aromatic aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D RMDY18_10260 isopropylmalate/homocitrate/citramalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:rmu00300]
D RMDY18_13080 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D RMDY18_17740 aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D RMDY18_04100 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RMDY18_14620 dihydrodipicolinate synthase/N-acetylneuraminate lyase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D RMDY18_14640 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D RMDY18_06050 tetrahydrodipicolinate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D RMDY18_06070 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D RMDY18_14460 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D RMDY18_13100 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D RMDY18_13550 UDP-N-acetylmuramyl tripeptide synthase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D RMDY18_13540 UDP-N-acetylmuramyl pentapeptide synthase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:rmu00310]
D RMDY18_07290 pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RMDY18_00860 NAD-dependent aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00220 Arginine biosynthesis [PATH:rmu00220]
D RMDY18_09070 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D RMDY18_17770 phosphoribosylformylglycinamidine synthase containing glutamine amidotransferase domain K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D RMDY18_07210 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RMDY18_13210 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RMDY18_00540 NAD-specific glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D RMDY18_04250 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RMDY18_05620 aspartate/tyrosine/aromatic aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D RMDY18_00440 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16]
C 00330 Arginine and proline metabolism [PATH:rmu00330]
D RMDY18_03520 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D RMDY18_13780 NAD-dependent aldehyde dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D RMDY18_00780 predicted ornithine cyclodeaminase K01750 E4.3.1.12; ornithine cyclodeaminase [EC:4.3.1.12]
D RMDY18_04250 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism [PATH:rmu00340]
D RMDY18_14380 phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide isomerase K24017 priA; phosphoribosyl isomerase A [EC:5.3.1.16 5.3.1.24]
D RMDY18_14390 glutamine amidotransferase K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D RMDY18_02150 histidinol-phosphate/aromatic aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RMDY18_07040 archaeal fructose-1,6-bisphosphatase K05602 hisN; histidinol-phosphatase [EC:3.1.3.15]
C 00350 Tyrosine metabolism [PATH:rmu00350]
D RMDY18_04250 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RMDY18_02150 histidinol-phosphate/aromatic aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RMDY18_08320 Zn-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D RMDY18_00860 NAD-dependent aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D RMDY18_09290 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase K16164 K16164; acylpyruvate hydrolase [EC:3.7.1.5]
C 00360 Phenylalanine metabolism [PATH:rmu00360]
D RMDY18_04250 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RMDY18_02150 histidinol-phosphate/aromatic aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00380 Tryptophan metabolism
D RMDY18_07290 pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:rmu00400]
D RMDY18_13690 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D RMDY18_09830 3-dehydroquinate synthetase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D RMDY18_03260 3-dehydroquinate dehydratase II K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D RMDY18_00530 shikimate 5-dehydrogenase K25901 qsuD; quinate/shikimate dehydrogenase (NAD+) [EC:1.1.1.24]
D RMDY18_09820 shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D RMDY18_07070 5-enolpyruvylshikimate-3-phosphate synthase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D RMDY18_09800 chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D RMDY18_11620 anthranilate/para-aminobenzoate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D RMDY18_10510 anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D RMDY18_14380 phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide isomerase K24017 priA; phosphoribosyl isomerase A [EC:5.3.1.16 5.3.1.24]
D RMDY18_11610 indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D RMDY18_08290 tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D RMDY18_08280 tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D RMDY18_06620 chorismate mutase K04092 tyrA1; chorismate mutase [EC:5.4.99.5]
D RMDY18_13960 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D RMDY18_01090 prephenate dehydratase K04518 pheA2; prephenate dehydratase [EC:4.2.1.51]
D RMDY18_04250 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RMDY18_02150 histidinol-phosphate/aromatic aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism
D RMDY18_01650 panthothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
C 00430 Taurine and hypotaurine metabolism [PATH:rmu00430]
D RMDY18_00540 NAD-specific glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D RMDY18_01050 phosphotransacetylase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D RMDY18_01260 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:rmu00450]
D RMDY18_17360 cystathionine beta-lyase/cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D RMDY18_18590 cystathionine beta-lyase/cystathionine gamma-synthase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D RMDY18_18610 cystathionine beta-lyase/cystathionine gamma-synthase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D RMDY18_19110 methionine synthase II K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D RMDY18_15680 selenocysteine lyase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D RMDY18_19820 thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D RMDY18_07540 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:rmu00460]
D RMDY18_01800 L-asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D RMDY18_16590 glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:rmu00470]
D RMDY18_05260 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D RMDY18_08130 D-alanine-D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RMDY18_09070 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D RMDY18_17770 phosphoribosylformylglycinamidine synthase containing glutamine amidotransferase domain K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D RMDY18_12660 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D RMDY18_13510 UDP-N-acetylmuramoylalanine-D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D RMDY18_14460 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D RMDY18_13100 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:rmu00480]
D RMDY18_05320 uncharacterized conserved protein K06048 gshA; glutamate---cysteine ligase / carboxylate-amine ligase [EC:6.3.2.2 6.3.-.-]
D RMDY18_07300 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D RMDY18_08590 aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D RMDY18_10680 aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D RMDY18_07920 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D RMDY18_10950 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis [PATH:rmu00515]
D RMDY18_16040 Dolichyl-phosphate-mannose--protein O-mannosyl transferase K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109]
C 00514 Other types of O-glycan biosynthesis [PATH:rmu00514]
D RMDY18_16040 Dolichyl-phosphate-mannose--protein O-mannosyl transferase K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109]
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:rmu00541]
D RMDY18_05550 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D RMDY18_06040 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RMDY18_06840 UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D RMDY18_15730 dTDP-glucose pyrophosphorylase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D RMDY18_15720 dTDP-D-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D RMDY18_15710 dTDP-4-dehydrorhamnose 3,5-epimerase K23987 rfbCD; dTDP-4-dehydrorhamnose 3,5-epimerase/reductase [EC:5.1.3.13 1.1.1.133]
D RMDY18_17420 phosphomannose isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D RMDY18_17430 phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D RMDY18_16470 mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D RMDY18_15940 N-acetylglucosamine-1-phosphate uridyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
C 00550 Peptidoglycan biosynthesis [PATH:rmu00550]
D RMDY18_08100 UDP-N-acetylglucosamine enolpyruvyl transferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D RMDY18_04060 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D RMDY18_13480 UDP-N-acetylmuramate-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D RMDY18_13510 UDP-N-acetylmuramoylalanine-D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D RMDY18_13550 UDP-N-acetylmuramyl tripeptide synthase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D RMDY18_08130 D-alanine-D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RMDY18_13540 UDP-N-acetylmuramyl pentapeptide synthase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D RMDY18_10600 undecaprenyl pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D RMDY18_10280 uncharacterized bacitracin resistance protein K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D RMDY18_13520 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D RMDY18_13490 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D RMDY18_13570 cell division protein FtsI/penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D RMDY18_19570 cell division protein FtsI/penicillin-binding protein 2 K05364 pbpA; penicillin-binding protein A
D RMDY18_01450 D-alanyl-D-alanine carboxypeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D RMDY18_09420 UDP-N-acetylmuramyl tripeptide synthase K23393 murT; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13]
D RMDY18_09440 predicted glutamine amidotransferase K07009 gatD; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13]
C 00552 Teichoic acid biosynthesis [PATH:rmu00552]
D RMDY18_10280 uncharacterized bacitracin resistance protein K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D RMDY18_10700 transcriptional regulator K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-]
D RMDY18_15030 glycosyltransferase K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:rmu00543]
D RMDY18_07930 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:rmu00730]
D RMDY18_11340 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D RMDY18_06600 cysteine sulfinate desulfinase/cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RMDY18_17000 glycine/D-amino acid oxidase K03153 thiO; glycine oxidase [EC:1.4.3.19]
D RMDY18_12350 deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D RMDY18_17020 uncharacterized enzyme of thiazole biosynthesis K03149 thiG; thiazole synthase [EC:2.8.1.10]
D RMDY18_16990 thiamine monophosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D RMDY18_08150 thiamine monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D RMDY18_15220 predicted GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D RMDY18_07050 predicted GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D RMDY18_05010 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D RMDY18_08940 putative transcription activator K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
C 00740 Riboflavin metabolism [PATH:rmu00740]
D RMDY18_11650 GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D RMDY18_11680 pyrimidine reductase, riboflavin biosynthesis K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D RMDY18_11660 3,4-dihydroxy-2-butanone 4-phosphate synthase K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12]
D RMDY18_11640 riboflavin synthase beta-chain K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D RMDY18_14750 FAD synthase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
C 00750 Vitamin B6 metabolism [PATH:rmu00750]
D RMDY18_13070 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D RMDY18_18890 pyridoxine biosynthesis enzyme K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6]
D RMDY18_18910 predicted glutamine amidotransferase involved in pyridoxine biosynthesis K08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6]
C 00760 Nicotinate and nicotinamide metabolism [PATH:rmu00760]
D RMDY18_12700 nicotinic acid phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D RMDY18_09020 nicotinic acid mononucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D RMDY18_05940 NTP pyrophosphohydrolase containing a Zn-finger K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D RMDY18_18860 NAD synthase K01916 nadE; NAD+ synthase [EC:6.3.1.5]
D RMDY18_14570 uncharacterized protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D RMDY18_12720 amidase related to nicotinamidase K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-]
D RMDY18_14080 predicted sugar kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D RMDY18_00860 NAD-dependent aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:rmu00770]
D RMDY18_07490 thiamine pyrophosphate-requiring enzyme K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D RMDY18_07510 acetolactate synthase, small (regulatory) subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D RMDY18_07530 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D RMDY18_18140 dihydroxy-acid dehydratase/phosphogluconate dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D RMDY18_13240 ketopantoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D RMDY18_01650 panthothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D RMDY18_05160 panthothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33]
D RMDY18_10000 phosphopantothenoylcysteine synthetase/decarboxylase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D RMDY18_08190 phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D RMDY18_11480 dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D RMDY18_05200 phosphopantetheinyl transferase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D RMDY18_02560 phosphopantetheinyl transferase K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-]
D RMDY18_07670 branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
C 00780 Biotin metabolism [PATH:rmu00780]
D RMDY18_11700 3-oxoacyl-(acyl-carrier-protein) synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D RMDY18_10770 dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RMDY18_10740 dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RMDY18_15340 biotin-(acetyl-CoA carboxylase) ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:rmu00785]
D RMDY18_07250 lipoate-protein ligase B K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D RMDY18_07230 lipoate synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D RMDY18_09280 lipoate-protein ligase A K16869 lipL; octanoyl-[GcvH]:protein N-octanoyltransferase [EC:2.3.1.204]
D RMDY18_07290 pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RMDY18_07900 pyruvate dehydrogenase complex, dehydrogenase (E1) component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D RMDY18_07280 pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D RMDY18_07110 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component K01616 kgd; multifunctional 2-oxoglutarate metabolism enzyme [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
D RMDY18_02170 pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D RMDY18_02180 pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D RMDY18_02190 pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D RMDY18_04580 glycine cleavage system protein P K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D RMDY18_04590 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D RMDY18_13770 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:rmu00790]
D RMDY18_01520 GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D RMDY18_01570 dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D RMDY18_01590 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D RMDY18_01550 dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D RMDY18_04110 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D RMDY18_08930 folylpolyglutamate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D RMDY18_11650 GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D RMDY18_19600 anthranilate/para-aminobenzoate synthase component II K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85]
D RMDY18_00740 anthranilate/para-aminobenzoate synthase component I K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85]
D RMDY18_16910 branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D RMDY18_04420 molybdenum cofactor biosynthesis enzyme K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D RMDY18_04460 molybdenum cofactor biosynthesis enzyme K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D RMDY18_04480 molybdopterin converting factor, large subunit K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D RMDY18_04390 molybdopterin biosynthesis enzyme K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D RMDY18_04450 molybdopterin biosynthesis enzyme K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
C 00670 One carbon pool by folate [PATH:rmu00670]
D RMDY18_04110 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D RMDY18_09220 formyltetrahydrofolate synthetase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D RMDY18_16570 5,10-methylene-tetrahydrofolate dehydrogenase/methenyl tetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D RMDY18_16590 glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RMDY18_16620 folate-dependent phosphoribosylglycinamide formyltransferase PurN K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D RMDY18_16610 AICAR transformylase/IMP cyclohydrolase PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D RMDY18_07740 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D RMDY18_04590 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D RMDY18_04120 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D RMDY18_19100 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D RMDY18_05540 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:rmu00860]
D RMDY18_03660 glutamyl- and glutaminyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RMDY18_07700 glutamyl- and glutaminyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RMDY18_06240 glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D RMDY18_06360 glutamate-1-semialdehyde aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D RMDY18_06320 delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D RMDY18_06300 porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D RMDY18_06310 uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D RMDY18_06250 uroporphyrinogen-III decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D RMDY18_06260 protoporphyrinogen oxidase K00231 PPOX; protoporphyrinogen/coproporphyrinogen III oxidase [EC:1.3.3.4 1.3.3.15]
D RMDY18_06290 protoheme ferro-lyase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D RMDY18_08880 uroporphyrinogen-III methylase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D RMDY18_17800 heme oxygenase K21480 HO; heme oxygenase (biliverdin-producing, ferredoxin) [EC:1.14.15.20]
D RMDY18_19480 ferritin-like protein K22336 bfrB; bacterioferritin B [EC:1.16.3.1]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:rmu00130]
D RMDY18_03800 methylase involved in ubiquinone/menaquinone biosynthesis K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D RMDY18_02550 isochorismate synthase K02361 entC; isochorismate synthase [EC:5.4.4.2]
D RMDY18_03710 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9]
D RMDY18_03720 L-alanine-DL-glutamate epimerase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113]
D RMDY18_03630 acyl-CoA synthetase K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26]
D RMDY18_03640 dihydroxynaphthoic acid synthase K01661 menB; naphthoate synthase [EC:4.1.3.36]
D RMDY18_03620 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:rmu00900]
D RMDY18_12350 deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D RMDY18_14920 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D RMDY18_17290 4-diphosphocytidyl-2-methyl-D-erithritol synthase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D RMDY18_15960 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D RMDY18_17280 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D RMDY18_14880 enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D RMDY18_05660 penicillin tolerance protein K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D RMDY18_13640 geranylgeranyl pyrophosphate synthase K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D RMDY18_16210 undecaprenyl pyrophosphate synthase K12503 E2.5.1.68; short-chain Z-isoprenyl diphosphate synthase [EC:2.5.1.68]
D RMDY18_10600 undecaprenyl pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D RMDY18_10930 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:rmu00523]
D RMDY18_15730 dTDP-glucose pyrophosphorylase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D RMDY18_15720 dTDP-D-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D RMDY18_15710 dTDP-4-dehydrorhamnose 3,5-epimerase K23987 rfbCD; dTDP-4-dehydrorhamnose 3,5-epimerase/reductase [EC:5.1.3.13 1.1.1.133]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides [PATH:rmu01053]
D RMDY18_02550 isochorismate synthase K02361 entC; isochorismate synthase [EC:5.4.4.2]
D RMDY18_02540 dehydrogenase K00216 entA; 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase [EC:1.3.1.28]
D RMDY18_07860 peptide arylation enzyme K02363 entE; 2,3-dihydroxybenzoate---[aryl-carrier protein] ligase [EC:6.3.2.14 6.2.1.71]
D RMDY18_07890 non-ribosomal peptide synthetase modules K02364 entF; L-serine---[L-seryl-carrier protein] ligase [EC:6.3.2.14 6.2.1.72]
C 01055 Biosynthesis of vancomycin group antibiotics
D RMDY18_15720 dTDP-D-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis
C 00261 Monobactam biosynthesis [PATH:rmu00261]
D RMDY18_17740 aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D RMDY18_04100 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RMDY18_14620 dihydrodipicolinate synthase/N-acetylneuraminate lyase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D RMDY18_14640 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:rmu00521]
D RMDY18_15730 dTDP-glucose pyrophosphorylase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D RMDY18_15720 dTDP-D-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D RMDY18_15710 dTDP-4-dehydrorhamnose 3,5-epimerase K23987 rfbCD; dTDP-4-dehydrorhamnose 3,5-epimerase/reductase [EC:5.1.3.13 1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
C 00525 Acarbose and validamycin biosynthesis [PATH:rmu00525]
D RMDY18_15730 dTDP-glucose pyrophosphorylase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D RMDY18_15720 dTDP-D-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:rmu00401]
D RMDY18_13960 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D RMDY18_04250 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RMDY18_02150 histidinol-phosphate/aromatic aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D RMDY18_11620 anthranilate/para-aminobenzoate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D RMDY18_11750 acyl-carrier-protein S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D RMDY18_10770 dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RMDY18_10740 dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D RMDY18_11710 acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites
D RMDY18_11270 s-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation
C 00627 Aminobenzoate degradation
D RMDY18_18450 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation [PATH:rmu00625]
D RMDY18_08320 Zn-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation
C 00633 Nitrotoluene degradation
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation
C 00791 Atrazine degradation
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation [PATH:rmu00626]
D RMDY18_08320 Zn-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:rmu03020]
D RMDY18_04630 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D RMDY18_04640 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D RMDY18_05070 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D RMDY18_09990 DNA-directed RNA polymerase, subunit K/omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:rmu03010]
D RMDY18_11510 ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D RMDY18_14990 ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D RMDY18_04820 ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D RMDY18_09730 ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D RMDY18_04970 ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D RMDY18_19760 ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D RMDY18_04680 ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D RMDY18_04930 ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D RMDY18_05120 ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D RMDY18_04720 ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D RMDY18_05060 ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D RMDY18_04660 ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D RMDY18_05050 ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D RMDY18_17170 ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D RMDY18_14690 ribosomal protein S15P/S13E K02956 RP-S15; small subunit ribosomal protein S15
D RMDY18_08410 ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D RMDY18_04850 ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D RMDY18_19740 ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D RMDY18_04790 ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D RMDY18_10090 ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D RMDY18_04300 ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D RMDY18_04780 ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D RMDY18_04740 ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D RMDY18_04750 ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D RMDY18_04920 ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D RMDY18_04940 ribosomal protein L6P/L9E K02933 RP-L6; large subunit ribosomal protein L6
D RMDY18_04340 ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D RMDY18_19730 ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D RMDY18_04330 ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D RMDY18_04280 ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D RMDY18_05110 ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D RMDY18_04890 ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D RMDY18_04990 ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D RMDY18_04830 ribosomal protein L16/L10E K02878 RP-L16; large subunit ribosomal protein L16
D RMDY18_05080 ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D RMDY18_04950 ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D RMDY18_11840 ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D RMDY18_14330 ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D RMDY18_08980 ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D RMDY18_04800 ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D RMDY18_04760 ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D RMDY18_04910 ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D RMDY18_15700 ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D RMDY18_08990 ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D RMDY18_17190 ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D RMDY18_04840 ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D RMDY18_04980 ribosomal protein L30/L7E K02907 RP-L30; large subunit ribosomal protein L30
D RMDY18_10710 ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D RMDY18_08210 ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D RMDY18_17180 ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D RMDY18_19920 ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D RMDY18_14340 ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D RMDY18_r00050 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RMDY18_r00090 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RMDY18_r00110 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RMDY18_r00040 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RMDY18_r00080 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RMDY18_r00100 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RMDY18_r00070 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RMDY18_r00020 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RMDY18_r00010 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RMDY18_r00030 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RMDY18_r00060 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:rmu00970]
D RMDY18_t00280 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RMDY18_t00020 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RMDY18_t00030 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RMDY18_t00300 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RMDY18_t00330 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RMDY18_t00440 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RMDY18_t00090 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RMDY18_t00390 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D RMDY18_t00470 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D RMDY18_t00350 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D RMDY18_t00210 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D RMDY18_t00400 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D RMDY18_t00320 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RMDY18_t00220 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RMDY18_t00480 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RMDY18_t00200 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RMDY18_t00360 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RMDY18_t00260 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RMDY18_t00420 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RMDY18_t00310 tRNA-His K14226 tRNA-His; tRNA His
D RMDY18_t00010 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D RMDY18_t00250 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RMDY18_t00490 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RMDY18_t00290 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RMDY18_t00170 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RMDY18_t00410 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RMDY18_t00040 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D RMDY18_t00180 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D RMDY18_t00190 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D RMDY18_t00380 tRNA-Met K14230 tRNA-Met; tRNA Met
D RMDY18_t00130 tRNA-Met K14230 tRNA-Met; tRNA Met
D RMDY18_t00160 tRNA-Met K14230 tRNA-Met; tRNA Met
D RMDY18_t00460 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D RMDY18_t00370 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RMDY18_t00270 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RMDY18_t00100 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RMDY18_t00060 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RMDY18_t00450 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RMDY18_t00070 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RMDY18_t00050 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RMDY18_t00120 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RMDY18_t00140 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RMDY18_t00080 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RMDY18_t00430 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RMDY18_t00150 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D RMDY18_t00110 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D RMDY18_t00230 tRNA-Val K14237 tRNA-Val; tRNA Val
D RMDY18_t00240 tRNA-Val K14237 tRNA-Val; tRNA Val
D RMDY18_t00340 tRNA-Val K14237 tRNA-Val; tRNA Val
D RMDY18_03660 glutamyl- and glutaminyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RMDY18_07700 glutamyl- and glutaminyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RMDY18_15250 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D RMDY18_15240 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D RMDY18_15270 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D RMDY18_09760 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D RMDY18_09660 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RMDY18_15090 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D RMDY18_09330 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D RMDY18_01100 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D RMDY18_17270 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D RMDY18_07540 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D RMDY18_07740 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D RMDY18_08730 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D RMDY18_11170 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RMDY18_08920 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D RMDY18_01660 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D RMDY18_19500 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D RMDY18_13110 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RMDY18_14860 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D RMDY18_09630 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D RMDY18_14220 phenylalanyl-tRNA synthetase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D RMDY18_14210 phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D RMDY18_14140 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RMDY18_16520 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:rmu03060]
D RMDY18_05000 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D RMDY18_04260 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D RMDY18_11050 hypothetical protein K03075 secG; preprotein translocase subunit SecG
D RMDY18_09520 preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D RMDY18_09530 preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D RMDY18_09510 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D RMDY18_19890 preprotein translocase subunit YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RMDY18_06720 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RMDY18_08380 signal recognition particle GTPase K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D RMDY18_11600 signal recognition particle GTPase K03110 ftsY; fused signal recognition particle receptor
D RMDY18_10420 sec-independent protein secretion pathway component K03116 tatA; sec-independent protein translocase protein TatA
D RMDY18_06100 sec-independent protein secretion pathway component K03117 tatB; sec-independent protein translocase protein TatB
D RMDY18_10430 sec-independent protein secretion pathway component TatC K03118 tatC; sec-independent protein translocase protein TatC
D RMDY18_11830 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D RMDY18_13350 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:rmu04122]
D RMDY18_06600 cysteine sulfinate desulfinase/cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RMDY18_06610 predicted tRNA methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D RMDY18_04480 molybdopterin converting factor, large subunit K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D RMDY18_04420 molybdenum cofactor biosynthesis enzyme K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D RMDY18_01420 dinucleotide-utilizing enzyme K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D RMDY18_04490 dinucleotide-utilizing enzyme K21147 moeZR; sulfur-carrier protein adenylyltransferase/sulfurtransferase [EC:2.7.7.80 2.7.7.- 2.8.1.11 2.8.1.-]
D RMDY18_17030 dinucleotide-utilizing enzyme K21147 moeZR; sulfur-carrier protein adenylyltransferase/sulfurtransferase [EC:2.7.7.80 2.7.7.- 2.8.1.11 2.8.1.-]
D RMDY18_04460 molybdenum cofactor biosynthesis enzyme K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D RMDY18_17010 sulfur transfer protein involved in thiamine biosynthesis K03154 thiS; sulfur carrier protein
C 03050 Proteasome
D RMDY18_10330 ATPase of the AAA+ class K13527 mpa; proteasome-associated ATPase
C 03018 RNA degradation [PATH:rmu03018]
D RMDY18_08970 ribonuclease G and E K08300 rne; ribonuclease E [EC:3.1.26.12]
D RMDY18_16380 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D RMDY18_14680 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D RMDY18_04010 superfamily II DNA and RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D RMDY18_01880 superfamily II DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D RMDY18_13040 transcription termination factor K03628 rho; transcription termination factor Rho
D RMDY18_14600 predicted hydrolase of the metallo-beta-lactamase superfamily K12574 rnj; ribonuclease J [EC:3.1.-.-]
D RMDY18_16800 molecular chaperone K04043 dnaK; molecular chaperone DnaK
D RMDY18_05360 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RMDY18_02460 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RMDY18_04150 polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D RMDY18_05130 uncharacterized conserved protein K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D RMDY18_19770 tRNA nucleotidyltransferase/poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:rmu03030]
D RMDY18_06390 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RMDY18_13320 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RMDY18_17710 DNA polymerase III, gamma/tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RMDY18_17380 ATPase involved in DNA replication K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RMDY18_10070 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RMDY18_00020 DNA polymerase sliding clamp subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RMDY18_19690 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D RMDY18_15050 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D RMDY18_11850 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RMDY18_19750 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RMDY18_02570 ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D RMDY18_11810 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D RMDY18_15290 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:rmu03410]
D RMDY18_03270 predicted EndoIII-related endonuclease K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D RMDY18_02420 uracil DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D RMDY18_01690 A/G-specific DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D RMDY18_08230 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D RMDY18_08620 formamidopyrimidine-DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
D RMDY18_13890 3-methyladenine DNA glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D RMDY18_16540 exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RMDY18_01340 exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RMDY18_15290 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:rmu03420]
D RMDY18_15510 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D RMDY18_09250 excinuclease ATPase subunit K03701 uvrA; excinuclease ABC subunit A
D RMDY18_11420 helicase subunit of the DNA excision repair complex K03702 uvrB; excinuclease ABC subunit B
D RMDY18_11280 nuclease subunit of the excinuclease complex K03703 uvrC; excinuclease ABC subunit C
D RMDY18_06410 superfamily I DNA and RNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RMDY18_06430 superfamily I DNA and RNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RMDY18_02680 superfamily I DNA and RNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RMDY18_15290 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:rmu03430]
D RMDY18_06410 superfamily I DNA and RNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RMDY18_06430 superfamily I DNA and RNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RMDY18_02680 superfamily I DNA and RNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RMDY18_05640 exonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D RMDY18_05630 exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D RMDY18_11850 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RMDY18_19750 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RMDY18_13320 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RMDY18_00020 DNA polymerase sliding clamp subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RMDY18_17710 DNA polymerase III, gamma/tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RMDY18_10070 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RMDY18_17380 ATPase involved in DNA replication K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RMDY18_06390 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RMDY18_15290 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:rmu03440]
D RMDY18_11850 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RMDY18_19750 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RMDY18_00030 recombinational DNA repair ATPase K03629 recF; DNA replication and repair protein RecF
D RMDY18_10610 recombinational DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O)
D RMDY18_17720 recombinational DNA repair protein K06187 recR; recombination protein RecR
D RMDY18_14530 RecA/RadA recombinase K03553 recA; recombination protein RecA
D RMDY18_09480 holliday junction resolvasome, DNA-binding subunit K03550 ruvA; holliday junction DNA helicase RuvA
D RMDY18_09490 holliday junction resolvasome, helicase subunit K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D RMDY18_09460 holliday junction resolvasome, endonuclease subunit K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D RMDY18_19440 predicted transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D RMDY18_18660 predicted transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D RMDY18_08170 RecG-like helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D RMDY18_13320 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RMDY18_00020 DNA polymerase sliding clamp subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RMDY18_17710 DNA polymerase III, gamma/tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RMDY18_10070 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RMDY18_17380 ATPase involved in DNA replication K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RMDY18_06390 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RMDY18_11260 primosomal protein N' - superfamily II helicase K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1 [PATH:rmu03250]
D RMDY18_00130 peptidyl-prolyl cis-trans isomerase-cyclophilin family K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus and Lyssavirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:rmu02010]
D RMDY18_18310 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component K15553 ssuA; sulfonate transport system substrate-binding protein
D RMDY18_18330 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component K15554 ssuC; sulfonate transport system permease protein
D RMDY18_18300 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D RMDY18_04430 ABC-type molybdate transport system, periplasmic component K02020 modA; molybdate transport system substrate-binding protein
D RMDY18_04440 ABC-type molybdate transport system, permease component K02018 modB; molybdate transport system permease protein
D RMDY18_18160 periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system K05845 opuC; osmoprotectant transport system substrate-binding protein
D RMDY18_05610 periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system K05845 opuC; osmoprotectant transport system substrate-binding protein
D RMDY18_18170 ABC-type proline/glycine betaine transport system, permease component K05846 opuBD; osmoprotectant transport system permease protein
D RMDY18_18190 ABC-type proline/glycine betaine transport system, permease component K05846 opuBD; osmoprotectant transport system permease protein
D RMDY18_18200 ABC-type proline/glycine betaine transport system, ATPase component K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D RMDY18_06010 ABC-type amino acid transport/signal transduction system, periplasmic component K10005 gluB; glutamate transport system substrate-binding protein
D RMDY18_06000 ABC-type amino acid transport system, permease component K10006 gluC; glutamate transport system permease protein
D RMDY18_05990 ABC-type amino acid transport system, permease component K10007 gluD; glutamate transport system permease protein
D RMDY18_06030 ABC-type polar amino acid transport system, ATPase component K10008 gluA; glutamate transport system ATP-binding protein [EC:7.4.2.1]
D RMDY18_18560 ABC-type amino acid transport/signal transduction system, periplasmic component K02424 tcyA; L-cystine transport system substrate-binding protein
D RMDY18_18580 ABC-type amino acid transport/signal transduction system, periplasmic component K02424 tcyA; L-cystine transport system substrate-binding protein
D RMDY18_18550 ABC-type amino acid transport system, permease component K10009 tcyB; L-cystine transport system permease protein
D RMDY18_18540 ABC-type polar amino acid transport system, ATPase component K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D RMDY18_02250 ABC-type metal ion transport system, periplasmic component/surface antigen K02073 metQ; D-methionine transport system substrate-binding protein
D RMDY18_02270 ABC-type metal ion transport system, permease component K02072 metI; D-methionine transport system permease protein
D RMDY18_02260 ABC-type metal ion transport system, ATPase component K02071 metN; D-methionine transport system ATP-binding protein
D RMDY18_17980 ABC-type dipeptide transport system, periplasmic component K13889 gsiB; glutathione transport system substrate-binding protein
D RMDY18_17970 ABC-type dipeptide transport system, periplasmic component K13889 gsiB; glutathione transport system substrate-binding protein
D RMDY18_17950 ABC-type dipeptide transport system, periplasmic component K13889 gsiB; glutathione transport system substrate-binding protein
D RMDY18_18040 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K13890 gsiC; glutathione transport system permease protein
D RMDY18_18020 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K13891 gsiD; glutathione transport system permease protein
D RMDY18_18010 ATPase component of various ABC-type transport system, contain duplicated ATPase K13892 gsiA; glutathione transport system ATP-binding protein
D RMDY18_18700 ABC-type Fe3+-hydroxamate transport system, periplasmic component K25286 fagD; iron-siderophore transport system substrate-binding protein
D RMDY18_07770 ABC-type Fe3+-hydroxamate transport system, periplasmic component K25286 fagD; iron-siderophore transport system substrate-binding protein
D RMDY18_07810 ABC-type Fe3+-siderophore transport system, permease component K23186 fepD; iron-siderophore transport system permease protein
D RMDY18_18710 ABC-type Fe3+-siderophore transport system, permease component K23186 fepD; iron-siderophore transport system permease protein
D RMDY18_07820 ABC-type enterobactin transport system, permease component K23187 fepG; iron-siderophore transport system permease protein
D RMDY18_18720 ABC-type enterobactin transport system, permease component K23187 fepG; iron-siderophore transport system permease protein
D RMDY18_07830 ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]
D RMDY18_17210 ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]
D RMDY18_01350 ABC-type metal ion transport system, periplasmic component/surface adhesin K11601 mntC; manganese transport system substrate-binding protein
D RMDY18_01380 ABC-type Mn2+/Zn2+ transport system, permease component K11602 mntB; manganese transport system permease protein
D RMDY18_01370 ABC-type Mn/Zn transport system, ATPase component K11603 mntA; manganese transport system ATP-binding protein [EC:7.2.2.5]
D RMDY18_10810 uncharacterized conserved protein K03523 bioY; biotin transport system substrate-specific component
D RMDY18_10830 ABC-type cobalt transport system, ATPase component K16784 bioM; biotin transport system ATP-binding protein [EC:7.6.2.-]
D RMDY18_16920 ABC-type cobalt transport system, permease component CbiQ K16785 ecfT; energy-coupling factor transport system permease protein
D RMDY18_12520 ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease component K16014 cydCD; ATP-binding cassette, subfamily C, bacterial CydCD
D RMDY18_12530 ABC-type antimicrobial peptide transport system, ATPase component K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
C 02060 Phosphotransferase system (PTS) [PATH:rmu02060]
D RMDY18_02380 phosphoenolpyruvate-protein kinase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D RMDY18_02400 phosphotransferase system, HPr-related protein K02784 ptsH; phosphocarrier protein HPr
D RMDY18_00840 phosphotransferase system IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D RMDY18_04360 phosphotransferase system IIC component, glucose/maltose/N-acetylglucosamine-specific K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211]
D RMDY18_17880 phosphotransferase system IIC component, glucose/maltose/N-acetylglucosamine-specific K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D RMDY18_05480 phosphotransferase system IIC component, glucose/maltose/N-acetylglucosamine-specific K02750 glvC; alpha-glucoside PTS system EIICB component [EC:2.7.1.208 2.7.1.-]
D RMDY18_00320 phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D RMDY18_00310 phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC K02795 manY; mannose PTS system EIIC component
D RMDY18_00300 phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID K02796 manZ; mannose PTS system EIID component
D RMDY18_02370 phosphotransferase system, fructose-specific IIC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D RMDY18_02350 fructose-1-phosphate kinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
C 03070 Bacterial secretion system [PATH:rmu03070]
D RMDY18_09520 preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D RMDY18_09530 preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D RMDY18_04260 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D RMDY18_11050 hypothetical protein K03075 secG; preprotein translocase subunit SecG
D RMDY18_05000 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D RMDY18_09510 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D RMDY18_19890 preprotein translocase subunit YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RMDY18_06720 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RMDY18_11600 signal recognition particle GTPase K03110 ftsY; fused signal recognition particle receptor
D RMDY18_08380 signal recognition particle GTPase K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D RMDY18_10420 sec-independent protein secretion pathway component K03116 tatA; sec-independent protein translocase protein TatA
D RMDY18_06100 sec-independent protein secretion pathway component K03117 tatB; sec-independent protein translocase protein TatB
D RMDY18_10430 sec-independent protein secretion pathway component TatC K03118 tatC; sec-independent protein translocase protein TatC
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:rmu02020]
D RMDY18_17320 signal transduction histidine kinase K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D RMDY18_17310 response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07776 regX3; two-component system, OmpR family, response regulator RegX3
D RMDY18_06570 trypsin-like serine protease K08372 pepD; putative serine protease PepD [EC:3.4.21.-]
D RMDY18_06660 signal transduction histidine kinase K07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3]
D RMDY18_06650 response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07670 mtrA; two-component system, OmpR family, response regulator MtrA
D RMDY18_00010 ATPase involved in DNA replication initiation K02313 dnaA; chromosomal replication initiator protein
D RMDY18_01350 ABC-type metal ion transport system, periplasmic component/surface adhesin K11601 mntC; manganese transport system substrate-binding protein
D RMDY18_01370 ABC-type Mn/Zn transport system, ATPase component K11603 mntA; manganese transport system ATP-binding protein [EC:7.2.2.5]
D RMDY18_01380 ABC-type Mn2+/Zn2+ transport system, permease component K11602 mntB; manganese transport system permease protein
D RMDY18_02040 citrate lyase beta subunit K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34]
D RMDY18_04500 nitrate reductase alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D RMDY18_04520 nitrate reductase beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D RMDY18_04550 nitrate reductase gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-]
D RMDY18_04530 nitrate reductase delta subunit K00373 narJ; nitrate reductase molybdenum cofactor assembly chaperone NarJ/NarW
D RMDY18_05700 signal transduction histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3]
D RMDY18_05710 response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K07693 desR; two-component system, NarL family, response regulator DesR
D RMDY18_06900 Flp pilus assembly protein, ATPase CpaF K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D RMDY18_03300 Flp pilus assembly protein, ATPase CpaF K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D RMDY18_06910 Flp pilus assembly protein TadB K12510 tadB; tight adherence protein B
D RMDY18_03310 Flp pilus assembly protein TadC K12510 tadB; tight adherence protein B
D RMDY18_06930 Flp pilus assembly protein TadC K12511 tadC; tight adherence protein C
D RMDY18_07210 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RMDY18_13210 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RMDY18_03240 cAMP-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D RMDY18_09070 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D RMDY18_12580 cytochrome bd-type quinol oxidase, subunit 1 K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D RMDY18_12570 cytochrome bd-type quinol oxidase, subunit 2 K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D RMDY18_16860 protein-tyrosine-phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:rmu02024]
D RMDY18_14740 LuxS protein involved in autoinducer AI2 synthesis K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D RMDY18_11620 anthranilate/para-aminobenzoate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D RMDY18_13690 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D RMDY18_13720 long-chain acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RMDY18_14180 acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RMDY18_02240 acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RMDY18_03240 cAMP-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D RMDY18_11650 GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D RMDY18_11680 pyrimidine reductase, riboflavin biosynthesis K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D RMDY18_07460 ABC-type dipeptide transport system, periplasmic component K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D RMDY18_17940 ABC-type dipeptide transport system, periplasmic component K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D RMDY18_17900 ABC-type dipeptide transport system, periplasmic component K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D RMDY18_17920 ABC-type dipeptide transport system, periplasmic component K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D RMDY18_19890 preprotein translocase subunit YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RMDY18_02920 subtilisin-like serine protease K14645 K14645; serine protease [EC:3.4.21.-]
D RMDY18_02910 subtilisin-like serine protease K14645 K14645; serine protease [EC:3.4.21.-]
D RMDY18_02930 subtilisin-like serine protease K14645 K14645; serine protease [EC:3.4.21.-]
D RMDY18_04260 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D RMDY18_11050 hypothetical protein K03075 secG; preprotein translocase subunit SecG
D RMDY18_05000 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D RMDY18_09510 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D RMDY18_06720 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RMDY18_11600 signal recognition particle GTPase K03110 ftsY; fused signal recognition particle receptor
D RMDY18_08380 signal recognition particle GTPase K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis
C 02040 Flagellar assembly [PATH:rmu02040]
D RMDY18_18560 ABC-type amino acid transport/signal transduction system, periplasmic component K02424 tcyA; L-cystine transport system substrate-binding protein
D RMDY18_18580 ABC-type amino acid transport/signal transduction system, periplasmic component K02424 tcyA; L-cystine transport system substrate-binding protein
D RMDY18_07350 DNA-directed RNA polymerase, sigma subunit K03086 rpoD; RNA polymerase primary sigma factor
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D RMDY18_16380 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance
D RMDY18_13570 cell division protein FtsI/penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:rmu01502]
D RMDY18_08130 D-alanine-D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RMDY18_05260 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D RMDY18_13540 UDP-N-acetylmuramyl pentapeptide synthase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D RMDY18_13520 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D RMDY18_13490 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance
D RMDY18_00130 peptidyl-prolyl cis-trans isomerase-cyclophilin family K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:rmu01000]
C 01001 Protein kinases [BR:rmu01001]
D RMDY18_19580 serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D RMDY18_19590 serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D RMDY18_13670 serine/threonine protein kinase K08884 K08884; serine/threonine protein kinase, bacterial [EC:2.7.11.1]
D RMDY18_19240 serine/threonine protein kinase K08884 K08884; serine/threonine protein kinase, bacterial [EC:2.7.11.1]
D RMDY18_15740 ATPase involved in chromosome partitioning K25588 K25588; tyrosine-protein kinase [EC:2.7.10.3]
D RMDY18_17320 signal transduction histidine kinase K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D RMDY18_06660 signal transduction histidine kinase K07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3]
D RMDY18_00350 signal transduction histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D RMDY18_02600 signal transduction histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D RMDY18_05700 signal transduction histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3]
D RMDY18_06790 signal transduction histidine kinase K00936 pdtaS; two-component system, sensor histidine kinase PdtaS [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:rmu01009]
D RMDY18_15300 serine/threonine protein phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
D RMDY18_19550 serine/threonine protein phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
C 01002 Peptidases and inhibitors [BR:rmu01002]
D RMDY18_13350 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
D RMDY18_16200 type II secretory pathway, prepilin signal peptidase PulO K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D RMDY18_05900 pyrrolidone-carboxylate peptidase K01304 pcp; pyroglutamyl-peptidase [EC:3.4.19.3]
D RMDY18_05420 GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D RMDY18_02660 cell wall-associated hydrolase K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D RMDY18_02950 glutamine phosphoribosylpyrophosphate amidotransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D RMDY18_05180 glucosamine 6-phosphate synthetase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D RMDY18_19620 sortase K07284 srtA; sortase A [EC:3.4.22.70]
D RMDY18_18960 predicted metal-dependent membrane protease K07052 K07052; CAAX protease family protein
D RMDY18_08590 aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D RMDY18_10680 aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D RMDY18_19130 predicted metalloendopeptidase K07386 pepO; putative endopeptidase [EC:3.4.24.-]
D RMDY18_07300 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D RMDY18_06070 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D RMDY18_13260 methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D RMDY18_05020 methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D RMDY18_06170 Xaa-Pro aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D RMDY18_01510 ATP-dependent Zn protease K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D RMDY18_03910 Zn-dependent protease with chaperone function K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D RMDY18_06570 trypsin-like serine protease K08372 pepD; putative serine protease PepD [EC:3.4.21.-]
D RMDY18_02920 subtilisin-like serine protease K14645 K14645; serine protease [EC:3.4.21.-]
D RMDY18_02910 subtilisin-like serine protease K14645 K14645; serine protease [EC:3.4.21.-]
D RMDY18_02930 subtilisin-like serine protease K14645 K14645; serine protease [EC:3.4.21.-]
D RMDY18_15230 protease II K01354 ptrB; oligopeptidase B [EC:3.4.21.83]
D RMDY18_01450 D-alanyl-D-alanine carboxypeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D RMDY18_08660 protease subunit of ATP-dependent Clp protease K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D RMDY18_08670 protease subunit of ATP-dependent Clp protease K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D RMDY18_06470 predicted secreted protein containing a PDZ domain K07177 K07177; Lon-like protease
D RMDY18_14410 SOS-response transcriptional repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D RMDY18_11830 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
C 01003 Glycosyltransferases [BR:rmu01003]
D RMDY18_10460 glycosyltransferase involved in cell wall biogenesis K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83]
D RMDY18_16040 Dolichyl-phosphate-mannose--protein O-mannosyl transferase K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109]
D RMDY18_15030 glycosyltransferase K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337]
D RMDY18_15810 glycosyltransferase K16150 K16150; glycogen synthase [EC:2.4.1.11]
D RMDY18_00570 glycosyltransferase K21011 pelF; polysaccharide biosynthesis protein PelF
D RMDY18_19010 transcriptional regulator K13671 K13671; alpha-1,2-mannosyltransferase [EC:2.4.1.-]
D RMDY18_18990 hypothetical protein K13671 K13671; alpha-1,2-mannosyltransferase [EC:2.4.1.-]
D RMDY18_11880 predicted acyltransferase K14339 mptB; alpha-1,6-mannosyltransferase [EC:2.4.1.-]
D RMDY18_06860 predicted glycosyltransferase K16650 glft2; galactofuranosylgalactofuranosylrhamnosyl-N-acetylglucosaminyl-diphospho-decaprenol beta-1,5/1,6-galactofuranosyltransferase [EC:2.4.1.288]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:rmu01005]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:rmu01011]
D RMDY18_08100 UDP-N-acetylglucosamine enolpyruvyl transferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D RMDY18_04060 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D RMDY18_13480 UDP-N-acetylmuramate-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D RMDY18_13510 UDP-N-acetylmuramoylalanine-D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D RMDY18_13550 UDP-N-acetylmuramyl tripeptide synthase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D RMDY18_08130 D-alanine-D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RMDY18_05260 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D RMDY18_12660 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D RMDY18_13520 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D RMDY18_13490 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D RMDY18_10280 uncharacterized bacitracin resistance protein K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D RMDY18_19790 uncharacterized membrane protein, putative virulence factor K03980 murJ; putative peptidoglycan lipid II flippase
D RMDY18_13570 cell division protein FtsI/penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D RMDY18_19570 cell division protein FtsI/penicillin-binding protein 2 K05364 pbpA; penicillin-binding protein A
D RMDY18_01450 D-alanyl-D-alanine carboxypeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D RMDY18_02660 cell wall-associated hydrolase K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D RMDY18_19620 sortase K07284 srtA; sortase A [EC:3.4.22.70]
D RMDY18_09780 predicted periplasmic solute-binding protein K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
C 01004 Lipid biosynthesis proteins [BR:rmu01004]
D RMDY18_11750 acyl-carrier-protein S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D RMDY18_11730 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D RMDY18_11700 3-oxoacyl-(acyl-carrier-protein) synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D RMDY18_10770 dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RMDY18_10740 dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RMDY18_08520 acyl-CoA thioesterase K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D RMDY18_18340 acyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RMDY18_13720 long-chain acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RMDY18_14180 acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RMDY18_02240 acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RMDY18_13700 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D RMDY18_11290 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins [BR:rmu01008]
D RMDY18_07860 peptide arylation enzyme K02363 entE; 2,3-dihydroxybenzoate---[aryl-carrier protein] ligase [EC:6.3.2.14 6.2.1.71]
D RMDY18_07890 non-ribosomal peptide synthetase modules K02364 entF; L-serine---[L-seryl-carrier protein] ligase [EC:6.3.2.14 6.2.1.72]
C 01006 Prenyltransferases [BR:rmu01006]
D RMDY18_13640 geranylgeranyl pyrophosphate synthase K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D RMDY18_16210 undecaprenyl pyrophosphate synthase K12503 E2.5.1.68; short-chain Z-isoprenyl diphosphate synthase [EC:2.5.1.68]
D RMDY18_10600 undecaprenyl pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D RMDY18_14480 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D RMDY18_03620 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
C 01007 Amino acid related enzymes [BR:rmu01007]
D RMDY18_03660 glutamyl- and glutaminyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RMDY18_07700 glutamyl- and glutaminyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RMDY18_14140 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RMDY18_16520 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D RMDY18_17270 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D RMDY18_13110 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RMDY18_07540 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D RMDY18_08920 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D RMDY18_08730 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D RMDY18_11170 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RMDY18_01660 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D RMDY18_19500 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D RMDY18_09660 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RMDY18_09630 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D RMDY18_15090 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D RMDY18_01100 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D RMDY18_14860 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D RMDY18_09330 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D RMDY18_09760 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D RMDY18_14220 phenylalanyl-tRNA synthetase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D RMDY18_14210 phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D RMDY18_04250 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RMDY18_05620 aspartate/tyrosine/aromatic aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D RMDY18_02150 histidinol-phosphate/aromatic aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RMDY18_06360 glutamate-1-semialdehyde aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D RMDY18_07670 branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:rmu00194]
D RMDY18_12820 F0F1-type ATP synthase, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D RMDY18_12830 F0F1-type ATP synthase, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D RMDY18_12850 F0F1-type ATP synthase, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D RMDY18_12860 F0F1-type ATP synthase, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D RMDY18_12880 F0F1-type ATP synthase, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D RMDY18_12900 F0F1-type ATP synthase, subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D RMDY18_12910 F0F1-type ATP synthase, subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D RMDY18_12920 F0F1-type ATP synthase, subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:rmu03000]
D RMDY18_01030 site-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D RMDY18_03380 uncharacterized protein conserved in archaea K13653 K13653; AraC family transcriptional regulator
D RMDY18_19640 transcriptional regulator K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D RMDY18_02330 transcriptional regulator of sugar metabolism K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D RMDY18_04380 transcriptional regulator K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D RMDY18_16550 transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D RMDY18_03060 transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D RMDY18_00230 transcriptional regulator K18476 tetR; TetR/AcrR family transcriptional regulator, tetracycline repressor protein
D RMDY18_00370 transcriptional regulator K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness
D RMDY18_16600 transcriptional regulator K21962 acnR; TetR/AcrR family transcriptional regulator, transcriptional repressor of aconitase
D RMDY18_17690 transcriptional regulator K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D RMDY18_16770 predicted transcriptional regulator K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
D RMDY18_07170 Fe2+/Zn2+ uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D RMDY18_03880 Fe2+/Zn2+ uptake regulation protein K22297 furA; Fur family transcriptional regulator, stress-responsive regulator
D RMDY18_03240 cAMP-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D RMDY18_17450 predicted transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D RMDY18_14560 predicted transcriptional regulator K27043 clgR; XRE family transcriptional regulator, stress-response regulator
D RMDY18_02650 Mn-dependent transcriptional regulator K26252 dtxR; DtxR family transcriptional regulator, iron-dependent repressor
D RMDY18_01390 Mn-dependent transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D RMDY18_15340 biotin-(acetyl-CoA carboxylase) ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D RMDY18_13780 NAD-dependent aldehyde dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D RMDY18_00330 transcriptional antiterminator K03488 licT; beta-glucoside operon transcriptional antiterminator
D RMDY18_06800 hypothetical protein K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D RMDY18_00990 uncharacterized protein conserved in archaea K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D RMDY18_19840 predicted transcriptional regulator K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RMDY18_14190 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D RMDY18_08940 putative transcription activator K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D RMDY18_13830 transcriptional regulator K05346 deoR; deoxyribonucleoside regulator
D RMDY18_09870 pyrimidine operon attenuation protein/uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D RMDY18_13290 predicted transcriptional regulator K07738 nrdR; transcriptional repressor NrdR
D RMDY18_13610 uncharacterized protein conserved in archaea K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:rmu03021]
D RMDY18_05070 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D RMDY18_04630 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D RMDY18_04640 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D RMDY18_09990 DNA-directed RNA polymerase, subunit K/omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D RMDY18_07350 DNA-directed RNA polymerase, sigma subunit K03086 rpoD; RNA polymerase primary sigma factor
D RMDY18_07090 DNA-directed RNA polymerase, sigma subunit K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D RMDY18_14830 transcription elongation factor K02600 nusA; transcription termination/antitermination protein NusA
D RMDY18_09850 transcription termination factor K03625 nusB; transcription antitermination protein NusB
D RMDY18_04270 transcription antiterminator K02601 nusG; transcription termination/antitermination protein NusG
D RMDY18_16240 transcription elongation factor K03624 greA; transcription elongation factor GreA
D RMDY18_13040 transcription termination factor K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:rmu03019]
D RMDY18_08970 ribonuclease G and E K08300 rne; ribonuclease E [EC:3.1.26.12]
D RMDY18_08220 dsRNA-specific ribonuclease K03685 rnc; ribonuclease III [EC:3.1.26.3]
D RMDY18_14600 predicted hydrolase of the metallo-beta-lactamase superfamily K12574 rnj; ribonuclease J [EC:3.1.-.-]
D RMDY18_11890 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RMDY18_04010 superfamily II DNA and RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D RMDY18_01880 superfamily II DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D RMDY18_16380 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D RMDY18_14680 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D RMDY18_13040 transcription termination factor K03628 rho; transcription termination factor Rho
D RMDY18_16800 molecular chaperone K04043 dnaK; molecular chaperone DnaK
D RMDY18_05360 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RMDY18_02460 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RMDY18_04150 polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D RMDY18_05130 uncharacterized conserved protein K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D RMDY18_19770 tRNA nucleotidyltransferase/poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D RMDY18_10020 predicted P-loop-containing kinase K06958 rapZ; RNase adapter protein RapZ
D RMDY18_10440 superfamily II RNA helicase K03727 helY; ATP-dependent RNA helicase HelY [EC:5.6.2.6]
D RMDY18_13160 HrpA-like helicase K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
C 03041 Spliceosome
C 03011 Ribosome [BR:rmu03011]
D RMDY18_11510 ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D RMDY18_14990 ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D RMDY18_04820 ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D RMDY18_09730 ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D RMDY18_04970 ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D RMDY18_19760 ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D RMDY18_04680 ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D RMDY18_04930 ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D RMDY18_05120 ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D RMDY18_04720 ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D RMDY18_05060 ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D RMDY18_04660 ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D RMDY18_05050 ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D RMDY18_17170 ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D RMDY18_14690 ribosomal protein S15P/S13E K02956 RP-S15; small subunit ribosomal protein S15
D RMDY18_08410 ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D RMDY18_04850 ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D RMDY18_19740 ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D RMDY18_04790 ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D RMDY18_10090 ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D RMDY18_04300 ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D RMDY18_04780 ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D RMDY18_04740 ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D RMDY18_04750 ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D RMDY18_04920 ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D RMDY18_04940 ribosomal protein L6P/L9E K02933 RP-L6; large subunit ribosomal protein L6
D RMDY18_19730 ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D RMDY18_04330 ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D RMDY18_04280 ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D RMDY18_04340 ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D RMDY18_05110 ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D RMDY18_04890 ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D RMDY18_04990 ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D RMDY18_04830 ribosomal protein L16/L10E K02878 RP-L16; large subunit ribosomal protein L16
D RMDY18_05080 ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D RMDY18_04950 ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D RMDY18_11840 ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D RMDY18_14330 ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D RMDY18_08980 ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D RMDY18_04800 ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D RMDY18_04760 ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D RMDY18_04910 ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D RMDY18_08990 ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D RMDY18_17190 ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D RMDY18_04840 ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D RMDY18_04980 ribosomal protein L30/L7E K02907 RP-L30; large subunit ribosomal protein L30
D RMDY18_10710 ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D RMDY18_08210 ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D RMDY18_17180 ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D RMDY18_19920 ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D RMDY18_14340 ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D RMDY18_15700 ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D RMDY18_r00020 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RMDY18_r00010 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RMDY18_r00030 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RMDY18_r00060 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RMDY18_r00050 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RMDY18_r00090 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RMDY18_r00110 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RMDY18_r00040 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RMDY18_r00080 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RMDY18_r00100 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RMDY18_r00070 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:rmu03009]
D RMDY18_08220 dsRNA-specific ribonuclease K03685 rnc; ribonuclease III [EC:3.1.26.3]
D RMDY18_11890 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RMDY18_10230 GTPase K03595 era; GTPase
D RMDY18_09010 predicted GTPase K03979 obgE; GTPase [EC:3.6.5.-]
D RMDY18_14830 transcription elongation factor K02600 nusA; transcription termination/antitermination protein NusA
D RMDY18_09850 transcription termination factor K03625 nusB; transcription antitermination protein NusB
D RMDY18_04270 transcription antiterminator K02601 nusG; transcription termination/antitermination protein NusG
D RMDY18_15980 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D RMDY18_07750 tRNA and rRNA cytosine-C5-methylase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D RMDY18_14450 16S RNA G1207 methylase RsmC K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D RMDY18_08180 N6-adenine-specific methylase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D RMDY18_10170 uncharacterized protein conserved in archaea K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D RMDY18_19860 predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D RMDY18_13600 predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D RMDY18_16030 predicted methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D RMDY18_14090 predicted rRNA methylase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D RMDY18_17250 rRNA methylase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D RMDY18_05030 predicted Fe-S-cluster redox enzyme K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D RMDY18_02470 SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189]
D RMDY18_17560 pseudouridylate synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D RMDY18_13970 16S rRNA uridine-516 pseudouridylate synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D RMDY18_13330 pseudouridylate synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D RMDY18_05300 acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D RMDY18_08440 RimM protein, required for 16S rRNA processing K02860 rimM; 16S rRNA processing protein RimM
D RMDY18_08970 ribonuclease G and E K08300 rne; ribonuclease E [EC:3.1.26.12]
D RMDY18_09770 predicted endonuclease involved in recombination K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D RMDY18_04010 superfamily II DNA and RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D RMDY18_15220 predicted GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D RMDY18_07050 predicted GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D RMDY18_13930 predicted GTPase K03977 engA; GTPase
D RMDY18_14430 GTPase K03665 hflX; GTPase
D RMDY18_12990 putative translation factor K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D RMDY18_09540 guanosine polyphosphate pyrophosphohydrolase/synthetase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D RMDY18_14800 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D RMDY18_14850 uncharacterized protein conserved in archaea K09748 rimP; ribosome maturation factor RimP
D RMDY18_15100 uncharacterized conserved protein K14761 rlbA; ribosome-associated protein
D RMDY18_09050 uncharacterized protein K09710 ybeB; ribosome-associated protein
D RMDY18_10200 predicted metal-dependent hydrolase K07042 ybeY; probable rRNA maturation factor
D RMDY18_05720 predicted GTPase, probable translation factor K06942 ychF; ribosome-binding ATPase
D RMDY18_08200 predicted metal-binding, possibly nucleic acid-binding protein K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:rmu03016]
D RMDY18_03660 glutamyl- and glutaminyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RMDY18_07700 glutamyl- and glutaminyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RMDY18_14860 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D RMDY18_08920 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D RMDY18_11170 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RMDY18_07540 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D RMDY18_13110 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RMDY18_01660 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D RMDY18_19500 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D RMDY18_09660 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RMDY18_09760 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D RMDY18_15090 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D RMDY18_09330 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D RMDY18_01100 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D RMDY18_17270 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D RMDY18_08730 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D RMDY18_09630 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D RMDY18_14220 phenylalanyl-tRNA synthetase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D RMDY18_14210 phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D RMDY18_14140 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RMDY18_16520 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D RMDY18_09690 D-Tyr-tRNAtyr deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D RMDY18_10320 tRNA(1-methyladenosine) methyltransferase K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220]
D RMDY18_16760 predicted S-adenosylmethionine-dependent methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D RMDY18_05090 pseudouridylate synthase K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D RMDY18_14780 pseudouridine synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D RMDY18_06600 cysteine sulfinate desulfinase/cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RMDY18_12990 putative translation factor K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D RMDY18_14480 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D RMDY18_19910 RNase P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D RMDY18_12640 RNase PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D RMDY18_12320 ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D RMDY18_12300 uncharacterized conserved protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D RMDY18_01890 cytosine/adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D RMDY18_14500 2-methylthioadenine synthetase K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D RMDY18_08450 tRNA-(guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D RMDY18_06590 predicted rRNA methylase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D RMDY18_14320 rRNA methylase K03437 spoU; RNA methyltransferase, TrmH family
D RMDY18_17560 pseudouridylate synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D RMDY18_06610 predicted tRNA methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D RMDY18_04210 predicted aminomethyltransferase related to GcvT K06980 ygfZ; tRNA-modifying protein YgfZ
D RMDY18_17590 queuine/archaeosine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D RMDY18_01480 predicted ATPase of the PP-loop superfamily implicated in cell cycle control K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D RMDY18_05280 inactive homolog of metal-dependent protease, putative molecular chaperone K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D RMDY18_05310 metal-dependent protease K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D RMDY18_05270 predicted ATPase or kinase K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D RMDY18_14680 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:rmu03012]
D RMDY18_14810 translation initiation factor 2 K02519 infB; translation initiation factor IF-2
D RMDY18_14350 translation initiation factor 3 K02520 infC; translation initiation factor IF-3
D RMDY18_14980 translation elongation factor Ts K02357 tsf; elongation factor Ts
D RMDY18_04700 GTPases - translation elongation factor K02358 tuf; elongation factor Tu
D RMDY18_04690 translation elongation factor K02355 fusA; elongation factor G
D RMDY18_13010 protein chain release factor A K02835 prfA; peptide chain release factor 1
D RMDY18_14950 ribosome recycling factor K02838 frr; ribosome recycling factor
D RMDY18_13000 methylase of polypeptide chain release factor K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D RMDY18_15690 peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D RMDY18_05040 translation initiation factor 1 K02518 infA; translation initiation factor IF-1
D RMDY18_09840 translation elongation factor P/translation initiation factor 5A K02356 efp; elongation factor P
D RMDY18_06970 protein chain release factor B K02836 prfB; peptide chain release factor 2
C 03110 Chaperones and folding catalysts [BR:rmu03110]
D RMDY18_02780 ATPase with chaperone activity, ATP-binding subunit K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D RMDY18_01680 ATPase with chaperone activity, ATP-binding subunit K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC
D RMDY18_08680 ATP-dependent protease Clp, ATPase subunit K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D RMDY18_16800 molecular chaperone K04043 dnaK; molecular chaperone DnaK
D RMDY18_05360 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RMDY18_02460 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RMDY18_16780 DnaJ-class molecular chaperone K03686 dnaJ; molecular chaperone DnaJ
D RMDY18_10160 DnaJ-class molecular chaperone with C-terminal Zn finger domain K03686 dnaJ; molecular chaperone DnaJ
D RMDY18_16790 molecular chaperone GrpE K03687 GRPE; molecular chaperone GrpE
D RMDY18_00910 ribosome-associated heat shock protein K04762 hslR; ribosome-associated heat shock protein Hsp15
D RMDY18_05340 co-chaperonin GroES K04078 groES; chaperonin GroES
D RMDY18_01510 ATP-dependent Zn protease K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D RMDY18_12920 F0F1-type ATP synthase, subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D RMDY18_02920 subtilisin-like serine protease K14645 K14645; serine protease [EC:3.4.21.-]
D RMDY18_02910 subtilisin-like serine protease K14645 K14645; serine protease [EC:3.4.21.-]
D RMDY18_02930 subtilisin-like serine protease K14645 K14645; serine protease [EC:3.4.21.-]
D RMDY18_00130 peptidyl-prolyl cis-trans isomerase-cyclophilin family K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D RMDY18_19830 thiol-disulfide isomerase K03671 TXN; thioredoxin
D RMDY18_03980 thiol-disulfide isomerase K03671 TXN; thioredoxin
D RMDY18_12780 thioredoxin domain-containing protein K05838 ybbN; putative thioredoxin
C 04131 Membrane trafficking [BR:rmu04131]
D RMDY18_00600 glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D RMDY18_11150 glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D RMDY18_17340 phosphoglycerate mutase 1 K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D RMDY18_08360 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D RMDY18_16970 permease of the major facilitator superfamily K06902 UMF1; MFS transporter, UMF1 family
C 04121 Ubiquitin system [BR:rmu04121]
D RMDY18_10360 hypothetical protein K13570 pup; prokaryotic ubiquitin-like protein Pup
C 03051 Proteasome [BR:rmu03051]
D RMDY18_10330 ATPase of the AAA+ class K13527 mpa; proteasome-associated ATPase
D RMDY18_10370 PPE-repeat protein K13571 pafA; proteasome accessory factor A [EC:6.3.1.19]
D RMDY18_10410 predicted transcriptional regulator K24033 pafBC; proteasome accessory factor BC
D RMDY18_10340 response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K20814 dop; Pup amidohydrolase [EC:3.5.1.119]
C 03032 DNA replication proteins [BR:rmu03032]
D RMDY18_02570 ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D RMDY18_01030 site-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D RMDY18_17150 bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D RMDY18_00010 ATPase involved in DNA replication initiation K02313 dnaA; chromosomal replication initiator protein
D RMDY18_19690 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D RMDY18_15050 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D RMDY18_11850 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RMDY18_19750 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RMDY18_13320 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RMDY18_00020 DNA polymerase sliding clamp subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RMDY18_10070 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RMDY18_17380 ATPase involved in DNA replication K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RMDY18_06390 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RMDY18_17710 DNA polymerase III, gamma/tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RMDY18_11810 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D RMDY18_15290 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D RMDY18_00060 type IIA topoisomerase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D RMDY18_12500 type IIA topoisomerase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D RMDY18_00040 type IIA topoisomerase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D RMDY18_12600 type IIA topoisomerase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D RMDY18_03470 topoisomerase IA K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:rmu03036]
D RMDY18_01030 site-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D RMDY18_08220 dsRNA-specific ribonuclease K03685 rnc; ribonuclease III [EC:3.1.26.3]
D RMDY18_01670 ABC-type sugar transport system, periplasmic component K26249 lsr2; nucleoid-associated protein Lsr2
D RMDY18_17150 bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D RMDY18_00010 ATPase involved in DNA replication initiation K02313 dnaA; chromosomal replication initiator protein
D RMDY18_02750 DNA-binding ferritin-like protein K04047 dps; starvation-inducible DNA-binding protein
D RMDY18_19640 transcriptional regulator K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D RMDY18_08270 chromosome segregation ATPase K03529 smc; chromosome segregation protein
D RMDY18_13990 uncharacterized conserved protein K05896 scpA; segregation and condensation protein A
D RMDY18_13980 predicted transcriptional regulator containing the HTH domain K06024 scpB; segregation and condensation protein B
D RMDY18_13570 cell division protein FtsI/penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D RMDY18_14590 DNA segregation ATPase FtsK/SpoIIIE K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D RMDY18_06820 DNA segregation ATPase FtsK/SpoIIIE K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D RMDY18_19230 DNA segregation ATPase FtsK/SpoIIIE K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D RMDY18_13460 cell division septal protein K03589 ftsQ; cell division protein FtsQ
D RMDY18_13500 bacterial cell division membrane protein K03588 ftsW; cell division protein FtsW
D RMDY18_13450 cell division GTPase K03531 ftsZ; cell division protein FtsZ
D RMDY18_12270 predicted ATPase K06916 zapE; cell division protein ZapE
D RMDY18_13390 uncharacterized protein conserved in archaea K09772 sepF; cell division inhibitor SepF
D RMDY18_14000 ATPase involved in chromosome partitioning K03496 parA; chromosome partitioning protein
D RMDY18_19850 ATPase involved in chromosome partitioning K03496 parA; chromosome partitioning protein
D RMDY18_13740 ATPase involved in chromosome partitioning K03496 parA; chromosome partitioning protein
D RMDY18_19840 predicted transcriptional regulator K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RMDY18_19860 predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D RMDY18_11760 integrase K03733 xerC; integrase/recombinase XerC
D RMDY18_14010 site-specific recombinase XerD K04763 xerD; integrase/recombinase XerD
D RMDY18_06110 ATPase involved in chromosome partitioning K03593 mrp; ATP-binding protein involved in chromosome partitioning
D RMDY18_01170 protein involved in cell division K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D RMDY18_01240 protein involved in cell division K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D RMDY18_10040 uncharacterized protein conserved in archaea K09762 whiA; cell division protein WhiA
C 03400 DNA repair and recombination proteins [BR:rmu03400]
D RMDY18_13880 methylated DNA-protein cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D RMDY18_02420 uracil DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D RMDY18_01690 A/G-specific DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D RMDY18_03270 predicted EndoIII-related endonuclease K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D RMDY18_14290 NTP pyrophosphohydrolase including oxidative damage repair enzyme K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RMDY18_05600 NTP pyrophosphohydrolase including oxidative damage repair enzyme K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RMDY18_05880 NTP pyrophosphohydrolase including oxidative damage repair enzyme K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RMDY18_19410 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RMDY18_12440 dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D RMDY18_13890 3-methyladenine DNA glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D RMDY18_08230 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D RMDY18_08620 formamidopyrimidine-DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
D RMDY18_16540 exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RMDY18_01340 exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RMDY18_15290 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D RMDY18_09250 excinuclease ATPase subunit K03701 uvrA; excinuclease ABC subunit A
D RMDY18_11420 helicase subunit of the DNA excision repair complex K03702 uvrB; excinuclease ABC subunit B
D RMDY18_11280 nuclease subunit of the excinuclease complex K03703 uvrC; excinuclease ABC subunit C
D RMDY18_06410 superfamily I DNA and RNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RMDY18_06430 superfamily I DNA and RNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RMDY18_02680 superfamily I DNA and RNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RMDY18_04630 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D RMDY18_04640 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D RMDY18_05070 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D RMDY18_09990 DNA-directed RNA polymerase, subunit K/omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D RMDY18_15510 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D RMDY18_05640 exonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D RMDY18_05630 exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D RMDY18_13320 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RMDY18_00020 DNA polymerase sliding clamp subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RMDY18_10070 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RMDY18_17380 ATPase involved in DNA replication K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RMDY18_06390 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RMDY18_17710 DNA polymerase III, gamma/tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RMDY18_11850 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RMDY18_19750 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RMDY18_14530 RecA/RadA recombinase K03553 recA; recombination protein RecA
D RMDY18_09480 holliday junction resolvasome, DNA-binding subunit K03550 ruvA; holliday junction DNA helicase RuvA
D RMDY18_09490 holliday junction resolvasome, helicase subunit K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D RMDY18_09460 holliday junction resolvasome, endonuclease subunit K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D RMDY18_11260 primosomal protein N' - superfamily II helicase K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D RMDY18_07380 ATPase involved in DNA repair K03546 sbcC; DNA repair protein SbcC/Rad50
D RMDY18_07370 DNA repair exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11
D RMDY18_01730 predicted ATP-dependent serine protease K04485 radA; DNA repair protein RadA/Sms
D RMDY18_00030 recombinational DNA repair ATPase K03629 recF; DNA replication and repair protein RecF
D RMDY18_19440 predicted transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D RMDY18_18660 predicted transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D RMDY18_08170 RecG-like helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D RMDY18_10610 recombinational DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O)
D RMDY18_17720 recombinational DNA repair protein K06187 recR; recombination protein RecR
D RMDY18_14060 ATPase involved in DNA repair K03631 recN; DNA repair protein RecN (Recombination protein N)
D RMDY18_12250 uncharacterized protein predicted to be involved in DNA repair K15342 cas1; CRISP-associated protein Cas1
D RMDY18_00060 type IIA topoisomerase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D RMDY18_12500 type IIA topoisomerase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D RMDY18_00040 type IIA topoisomerase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D RMDY18_12600 type IIA topoisomerase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D RMDY18_03470 topoisomerase IA K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D RMDY18_17150 bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D RMDY18_01880 superfamily II DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D RMDY18_13630 nucleotidyltransferase/DNA polymerase involved in DNA repair K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D RMDY18_14410 SOS-response transcriptional repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D RMDY18_14420 Rad3-related DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D RMDY18_17540 Lhr-like helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D RMDY18_04140 NTP pyrophosphohydrolase including oxidative damage repair enzyme K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69]
D RMDY18_14020 NTP pyrophosphohydrolase including oxidative damage repair enzyme K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
D RMDY18_09160 ribonucleotide reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RMDY18_09180 ribonucleotide reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:rmu03029]
D RMDY18_14810 translation initiation factor 2 K02519 infB; translation initiation factor IF-2
D RMDY18_14350 translation initiation factor 3 K02520 infC; translation initiation factor IF-3
D RMDY18_14980 translation elongation factor Ts K02357 tsf; elongation factor Ts
D RMDY18_04700 GTPases - translation elongation factor K02358 tuf; elongation factor Tu
D RMDY18_04690 translation elongation factor K02355 fusA; elongation factor G
D RMDY18_10230 GTPase K03595 era; GTPase
D RMDY18_14140 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RMDY18_11170 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RMDY18_09660 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RMDY18_15090 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D RMDY18_13110 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RMDY18_15250 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D RMDY18_15240 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D RMDY18_15270 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D RMDY18_11850 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RMDY18_19750 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RMDY18_16800 molecular chaperone K04043 dnaK; molecular chaperone DnaK
D RMDY18_16790 molecular chaperone GrpE K03687 GRPE; molecular chaperone GrpE
D RMDY18_05360 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RMDY18_02460 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RMDY18_05340 co-chaperonin GroES K04078 groES; chaperonin GroES
D RMDY18_16780 DnaJ-class molecular chaperone K03686 dnaJ; molecular chaperone DnaJ
D RMDY18_10160 DnaJ-class molecular chaperone with C-terminal Zn finger domain K03686 dnaJ; molecular chaperone DnaJ
D RMDY18_06600 cysteine sulfinate desulfinase/cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RMDY18_06110 ATPase involved in chromosome partitioning K03593 mrp; ATP-binding protein involved in chromosome partitioning
D RMDY18_19890 preprotein translocase subunit YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:rmu02000]
D RMDY18_15900 ABC-type multidrug transport system, ATPase and permease component K24846 pglK; ATP-binding cassette, subfamily B, bacterial PglK [EC:7.5.2.-]
D RMDY18_03150 ABC-type multidrug transport system, ATPase and permease component K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D RMDY18_03160 ABC-type multidrug transport system, ATPase and permease component K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D RMDY18_19090 ABC-type multidrug transport system, ATPase and permease component K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D RMDY18_12520 ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease component K16014 cydCD; ATP-binding cassette, subfamily C, bacterial CydCD
D RMDY18_12530 ABC-type antimicrobial peptide transport system, ATPase component K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D RMDY18_15950 ATPase component of ABC transporter with duplicated ATPase domains K15738 uup; ABC transport system ATP-binding/permease protein
D RMDY18_04430 ABC-type molybdate transport system, periplasmic component K02020 modA; molybdate transport system substrate-binding protein
D RMDY18_04440 ABC-type molybdate transport system, permease component K02018 modB; molybdate transport system permease protein
D RMDY18_18310 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component K15553 ssuA; sulfonate transport system substrate-binding protein
D RMDY18_18330 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component K15554 ssuC; sulfonate transport system permease protein
D RMDY18_18300 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D RMDY18_18160 periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system K05845 opuC; osmoprotectant transport system substrate-binding protein
D RMDY18_05610 periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system K05845 opuC; osmoprotectant transport system substrate-binding protein
D RMDY18_18170 ABC-type proline/glycine betaine transport system, permease component K05846 opuBD; osmoprotectant transport system permease protein
D RMDY18_18190 ABC-type proline/glycine betaine transport system, permease component K05846 opuBD; osmoprotectant transport system permease protein
D RMDY18_18200 ABC-type proline/glycine betaine transport system, ATPase component K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D RMDY18_06010 ABC-type amino acid transport/signal transduction system, periplasmic component K10005 gluB; glutamate transport system substrate-binding protein
D RMDY18_06000 ABC-type amino acid transport system, permease component K10006 gluC; glutamate transport system permease protein
D RMDY18_05990 ABC-type amino acid transport system, permease component K10007 gluD; glutamate transport system permease protein
D RMDY18_06030 ABC-type polar amino acid transport system, ATPase component K10008 gluA; glutamate transport system ATP-binding protein [EC:7.4.2.1]
D RMDY18_18560 ABC-type amino acid transport/signal transduction system, periplasmic component K02424 tcyA; L-cystine transport system substrate-binding protein
D RMDY18_18580 ABC-type amino acid transport/signal transduction system, periplasmic component K02424 tcyA; L-cystine transport system substrate-binding protein
D RMDY18_18550 ABC-type amino acid transport system, permease component K10009 tcyB; L-cystine transport system permease protein
D RMDY18_18540 ABC-type polar amino acid transport system, ATPase component K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D RMDY18_02250 ABC-type metal ion transport system, periplasmic component/surface antigen K02073 metQ; D-methionine transport system substrate-binding protein
D RMDY18_02270 ABC-type metal ion transport system, permease component K02072 metI; D-methionine transport system permease protein
D RMDY18_02260 ABC-type metal ion transport system, ATPase component K02071 metN; D-methionine transport system ATP-binding protein
D RMDY18_03790 ABC-type amino acid transport/signal transduction system, periplasmic component K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D RMDY18_03780 ABC-type amino acid transport system, permease component K02029 ABC.PA.P; polar amino acid transport system permease protein
D RMDY18_03760 ABC-type polar amino acid transport system, ATPase component K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D RMDY18_17980 ABC-type dipeptide transport system, periplasmic component K13889 gsiB; glutathione transport system substrate-binding protein
D RMDY18_17970 ABC-type dipeptide transport system, periplasmic component K13889 gsiB; glutathione transport system substrate-binding protein
D RMDY18_17950 ABC-type dipeptide transport system, periplasmic component K13889 gsiB; glutathione transport system substrate-binding protein
D RMDY18_18040 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K13890 gsiC; glutathione transport system permease protein
D RMDY18_18020 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K13891 gsiD; glutathione transport system permease protein
D RMDY18_18010 ATPase component of various ABC-type transport system, contain duplicated ATPase K13892 gsiA; glutathione transport system ATP-binding protein
D RMDY18_07460 ABC-type dipeptide transport system, periplasmic component K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D RMDY18_17940 ABC-type dipeptide transport system, periplasmic component K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D RMDY18_17900 ABC-type dipeptide transport system, periplasmic component K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D RMDY18_17920 ABC-type dipeptide transport system, periplasmic component K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D RMDY18_17830 ABC-type hemin transport system, periplasmic component K25132 hmuT; heme transport system substrate-binding protein
D RMDY18_17840 ABC-type Fe3+-siderophore transport system, permease component K25133 hmuU; heme transport system permease protein
D RMDY18_17850 ABC-type hemin transport system, ATPase component K10834 hmuV; heme transport system ATP-binding protein [EC:7.6.2.5]
D RMDY18_18700 ABC-type Fe3+-hydroxamate transport system, periplasmic component K25286 fagD; iron-siderophore transport system substrate-binding protein
D RMDY18_07770 ABC-type Fe3+-hydroxamate transport system, periplasmic component K25286 fagD; iron-siderophore transport system substrate-binding protein
D RMDY18_07810 ABC-type Fe3+-siderophore transport system, permease component K23186 fepD; iron-siderophore transport system permease protein
D RMDY18_18710 ABC-type Fe3+-siderophore transport system, permease component K23186 fepD; iron-siderophore transport system permease protein
D RMDY18_07820 ABC-type enterobactin transport system, permease component K23187 fepG; iron-siderophore transport system permease protein
D RMDY18_18720 ABC-type enterobactin transport system, permease component K23187 fepG; iron-siderophore transport system permease protein
D RMDY18_07830 ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]
D RMDY18_17210 ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]
D RMDY18_11450 ABC-type Fe3+-hydroxamate transport system, periplasmic component K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D RMDY18_11430 ABC-type Fe3+-siderophore transport system, permease component K02015 ABC.FEV.P; iron complex transport system permease protein
D RMDY18_11440 ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D RMDY18_10730 ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D RMDY18_01350 ABC-type metal ion transport system, periplasmic component/surface adhesin K11601 mntC; manganese transport system substrate-binding protein
D RMDY18_01380 ABC-type Mn2+/Zn2+ transport system, permease component K11602 mntB; manganese transport system permease protein
D RMDY18_01370 ABC-type Mn/Zn transport system, ATPase component K11603 mntA; manganese transport system ATP-binding protein [EC:7.2.2.5]
D RMDY18_19330 ABC-type Mn2+/Zn2+ transport system, permease component K09819 ABC.MN.P; manganese/iron transport system permease protein
D RMDY18_19320 ABC-type Mn/Zn transport system, ATPase component K09820 ABC.MN.A; manganese/iron transport system ATP-binding protein
D RMDY18_10810 uncharacterized conserved protein K03523 bioY; biotin transport system substrate-specific component
D RMDY18_10830 ABC-type cobalt transport system, ATPase component K16784 bioM; biotin transport system ATP-binding protein [EC:7.6.2.-]
D RMDY18_16920 ABC-type cobalt transport system, permease component CbiQ K16785 ecfT; energy-coupling factor transport system permease protein
D RMDY18_16930 ABC-type cobalt transport system, ATPase component K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D RMDY18_16950 predicted membrane protein K16925 ykoE; energy-coupling factor transport system permease protein
D RMDY18_07140 ABC-type metal ion transport system, periplasmic component/surface adhesin K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein
D RMDY18_07160 ABC-type Mn2+/Zn2+ transport system, permease component K02075 ABC.ZM.P; zinc/manganese transport system permease protein
D RMDY18_07150 ABC-type Mn/Zn transport system, ATPase component K02074 ABC.ZM.A; zinc/manganese transport system ATP-binding protein
D RMDY18_12760 DNA polymerase sliding clamp subunit K01992 ABC-2.P; ABC-2 type transport system permease protein
D RMDY18_05690 ABC-type multidrug transport system, permease component K01992 ABC-2.P; ABC-2 type transport system permease protein
D RMDY18_10920 ABC-type multidrug transport system, permease component K01992 ABC-2.P; ABC-2 type transport system permease protein
D RMDY18_15200 ABC-type multidrug transport system, permease component K01992 ABC-2.P; ABC-2 type transport system permease protein
D RMDY18_15210 ABC-type multidrug transport system, permease component K01992 ABC-2.P; ABC-2 type transport system permease protein
D RMDY18_06870 ABC-type polysaccharide/polyol phosphate export system, permease component K01992 ABC-2.P; ABC-2 type transport system permease protein
D RMDY18_05680 ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D RMDY18_10910 ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D RMDY18_15190 ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D RMDY18_12770 ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D RMDY18_06890 ABC-type polysaccharide/polyol phosphate transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D RMDY18_03050 ABC-type antimicrobial peptide transport system, permease component K02004 ABC.CD.P; putative ABC transport system permease protein
D RMDY18_07580 ABC-type antimicrobial peptide transport system, permease component K02004 ABC.CD.P; putative ABC transport system permease protein
D RMDY18_07570 ABC-type antimicrobial peptide transport system, ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D RMDY18_02300 ABC-type antimicrobial peptide transport system, ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D RMDY18_10870 ABC-type transport system involved in Fe-S cluster assembly, ATPase component K09013 sufC; Fe-S cluster assembly ATP-binding protein
D RMDY18_01290 predicted Na+-dependent transporter K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D RMDY18_18870 Na+-driven multidrug efflux pump K18908 mepA; MATE family, multidrug efflux pump
D RMDY18_00920 Na+-driven multidrug efflux pump K26937 dinF; MATE family, multidrug efflux pump
D RMDY18_19060 permease of the major facilitator superfamily K06609 iolT; MFS transporter, SP family, major inositol transporter
D RMDY18_19120 sugar phosphate permease K02445 glpT; MFS transporter, OPA family, glycerol-3-phosphate transporter
D RMDY18_04560 nitrate/nitrite transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D RMDY18_16890 permease of the major facilitator superfamily K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D RMDY18_18510 permease of the major facilitator superfamily K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D RMDY18_19370 permease of the major facilitator superfamily K08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein
D RMDY18_16970 permease of the major facilitator superfamily K06902 UMF1; MFS transporter, UMF1 family
D RMDY18_04080 permease of the major facilitator superfamily K08369 ydjE; MFS transporter, putative metabolite:H+ symporter
D RMDY18_02380 phosphoenolpyruvate-protein kinase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D RMDY18_02400 phosphotransferase system, HPr-related protein K02784 ptsH; phosphocarrier protein HPr
D RMDY18_00840 phosphotransferase system IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D RMDY18_04360 phosphotransferase system IIC component, glucose/maltose/N-acetylglucosamine-specific K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211]
D RMDY18_17880 phosphotransferase system IIC component, glucose/maltose/N-acetylglucosamine-specific K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D RMDY18_05480 phosphotransferase system IIC component, glucose/maltose/N-acetylglucosamine-specific K02750 glvC; alpha-glucoside PTS system EIICB component [EC:2.7.1.208 2.7.1.-]
D RMDY18_02370 phosphotransferase system, fructose-specific IIC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D RMDY18_00320 phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D RMDY18_00310 phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC K02795 manY; mannose PTS system EIIC component
D RMDY18_00300 phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID K02796 manZ; mannose PTS system EIID component
D RMDY18_00430 glycerol uptake facilitator K02440 glpF; glycerol uptake facilitator
D RMDY18_13850 glycerol uptake facilitator K02440 glpF; glycerol uptake facilitator
D RMDY18_09370 kef-type K+ transport system, predicted NAD-binding component K10716 kch; voltage-gated potassium channel
D RMDY18_05150 large-conductance mechanosensitive channel K03282 mscL; large conductance mechanosensitive channel
D RMDY18_18750 Mg2+ and Co2+ transporter K03284 corA; magnesium transporter
D RMDY18_00390 integral membrane protein possibly involved in chromosome condensation K06199 crcB; fluoride exporter
D RMDY18_00400 integral membrane protein possibly involved in chromosome condensation K06199 crcB; fluoride exporter
D RMDY18_07130 hemolysin K03699 tlyC; magnesium and cobalt exporter, CNNM family
D RMDY18_07120 hemolysin K03699 tlyC; magnesium and cobalt exporter, CNNM family
D RMDY18_19210 chitinase K21449 ata; trimeric autotransporter adhesin
D RMDY18_05860 amino acid transporter K11733 lysP; lysine-specific permease
D RMDY18_17660 gamma-aminobutyrate permease K11734 aroP; aromatic amino acid transport protein AroP
D RMDY18_16730 gamma-aminobutyrate permease K11737 cycA; D-serine/D-alanine/glycine transporter
D RMDY18_16740 gamma-aminobutyrate permease K11737 cycA; D-serine/D-alanine/glycine transporter
D RMDY18_00790 gamma-aminobutyrate permease K11738 ansP; L-asparagine permease
D RMDY18_14710 gamma-aminobutyrate permease K16234 hutT; histidine transporter
D RMDY18_09060 Co/Zn/Cd efflux system component K16264 czcD; cobalt-zinc-cadmium efflux system protein
D RMDY18_02100 predicted permease, DMT superfamily K11939 rhtA; inner membrane transporter RhtA
D RMDY18_02090 predicted permease, DMT superfamily K11939 rhtA; inner membrane transporter RhtA
D RMDY18_03850 predicted permease K05786 rarD; chloramphenicol-sensitive protein RarD
D RMDY18_03080 L-lactate permease K03303 lutP; lactate permease
D RMDY18_13910 L-lactate permease K03303 lutP; lactate permease
D RMDY18_13920 L-lactate permease K03303 lutP; lactate permease
D RMDY18_04310 tellurite resistance protein K03304 tehA; tellurite resistance protein
D RMDY18_03650 Na+/proline symporter K11928 putP; sodium/proline symporter
D RMDY18_19490 Na+/H+ antiporter K03313 nhaA; Na+:H+ antiporter, NhaA family
D RMDY18_18880 NhaP-type Na+/H+ and K+/H+ antiporter K24163 nhaK; monovalent cation/hydrogen antiporter
D RMDY18_00250 NhaP-type Na+/H+ and K+/H+ antiporter K24163 nhaK; monovalent cation/hydrogen antiporter
D RMDY18_03540 Trk-type K+ transport system, membrane component K03498 trkH; trk/ktr system potassium uptake protein
D RMDY18_03530 K+ transport system, NAD-binding component K03499 trkA; trk/ktr system potassium uptake protein
D RMDY18_12400 K+ transport system, NAD-binding component K03499 trkA; trk/ktr system potassium uptake protein
D RMDY18_12390 K+ transport system, NAD-binding component K03499 trkA; trk/ktr system potassium uptake protein
D RMDY18_18260 permease K06901 pbuG; adenine/guanine/hypoxanthine permease
D RMDY18_18270 permease K06901 pbuG; adenine/guanine/hypoxanthine permease
D RMDY18_03510 chloride channel protein EriC K03281 clcA; chloride channel protein, CIC family
D RMDY18_19790 uncharacterized membrane protein, putative virulence factor K03980 murJ; putative peptidoglycan lipid II flippase
D RMDY18_05430 predicted permease K24180 mleP; malate permease and related proteins
D RMDY18_19650 lysine efflux permease K06895 lysE; L-lysine exporter family protein LysE/ArgO
D RMDY18_05840 predicted branched-chain amino acid permease K26605 azlC; branched chain amino acid efflux pump
D RMDY18_05830 predicted branched-chain amino acid permease K26606 azlD; branched chain amino acid efflux pump
D RMDY18_16260 predicted permease K20469 K20469; putative heme transporter
D RMDY18_17670 uncharacterized conserved protein K09125 yhhQ; queuosine precursor transporter
D RMDY18_02740 uncharacterized membrane protein K22736 VIT; vacuolar iron transporter family protein
D RMDY18_13500 bacterial cell division membrane protein K03588 ftsW; cell division protein FtsW
D RMDY18_14280 high-affinity Fe2+/Pb2+ permease K07243 FTR; high-affinity iron transporter
D RMDY18_14270 predicted periplasmic lipoprotein involved in iron transport K07224 efeO; iron uptake system component EfeO
D RMDY18_14250 predicted iron-dependent peroxidase K16301 efeB; deferrochelatase/peroxidase EfeB [EC:1.11.1.-]
D RMDY18_04500 nitrate reductase alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D RMDY18_04520 nitrate reductase beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D RMDY18_04550 nitrate reductase gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-]
D RMDY18_15740 ATPase involved in chromosome partitioning K25588 K25588; tyrosine-protein kinase [EC:2.7.10.3]
D RMDY18_11690 nicotinamide mononucleotide transporter K03811 pnuC; nicotinamide mononucleotide transporter
C 02044 Secretion system [BR:rmu02044]
D RMDY18_16200 type II secretory pathway, prepilin signal peptidase PulO K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D RMDY18_06900 Flp pilus assembly protein, ATPase CpaF K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D RMDY18_03300 Flp pilus assembly protein, ATPase CpaF K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D RMDY18_06910 Flp pilus assembly protein TadB K12510 tadB; tight adherence protein B
D RMDY18_03310 Flp pilus assembly protein TadC K12510 tadB; tight adherence protein B
D RMDY18_06930 Flp pilus assembly protein TadC K12511 tadC; tight adherence protein C
D RMDY18_13380 predicted integral membrane protein K02221 yggT; YggT family protein
D RMDY18_10050 DNA uptake protein K02237 comEA; competence protein ComEA
D RMDY18_10060 predicted membrane metal-binding protein K02238 comEC; competence protein ComEC
D RMDY18_06720 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RMDY18_09520 preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D RMDY18_04260 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D RMDY18_09530 preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D RMDY18_11050 hypothetical protein K03075 secG; preprotein translocase subunit SecG
D RMDY18_05000 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D RMDY18_08380 signal recognition particle GTPase K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D RMDY18_11600 signal recognition particle GTPase K03110 ftsY; fused signal recognition particle receptor
D RMDY18_09510 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D RMDY18_19890 preprotein translocase subunit YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RMDY18_10420 sec-independent protein secretion pathway component K03116 tatA; sec-independent protein translocase protein TatA
D RMDY18_06100 sec-independent protein secretion pathway component K03117 tatB; sec-independent protein translocase protein TatB
D RMDY18_10430 sec-independent protein secretion pathway component TatC K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:rmu02042]
D RMDY18_07130 hemolysin K03699 tlyC; magnesium and cobalt exporter, CNNM family
D RMDY18_07120 hemolysin K03699 tlyC; magnesium and cobalt exporter, CNNM family
C 02022 Two-component system [BR:rmu02022]
D RMDY18_17320 signal transduction histidine kinase K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D RMDY18_17310 response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07776 regX3; two-component system, OmpR family, response regulator RegX3
D RMDY18_06660 signal transduction histidine kinase K07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3]
D RMDY18_06650 response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07670 mtrA; two-component system, OmpR family, response regulator MtrA
D RMDY18_00350 signal transduction histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D RMDY18_02600 signal transduction histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D RMDY18_02620 response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483 K02483; two-component system, OmpR family, response regulator
D RMDY18_00340 response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483 K02483; two-component system, OmpR family, response regulator
D RMDY18_05700 signal transduction histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3]
D RMDY18_05710 response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K07693 desR; two-component system, NarL family, response regulator DesR
D RMDY18_06790 signal transduction histidine kinase K00936 pdtaS; two-component system, sensor histidine kinase PdtaS [EC:2.7.13.3]
D RMDY18_11560 response regulator with putative antiterminator output domain K22010 pdtaR; two-component system, response regulator PdtaR
C 02035 Bacterial motility proteins [BR:rmu02035]
D RMDY18_18560 ABC-type amino acid transport/signal transduction system, periplasmic component K02424 tcyA; L-cystine transport system substrate-binding protein
D RMDY18_18580 ABC-type amino acid transport/signal transduction system, periplasmic component K02424 tcyA; L-cystine transport system substrate-binding protein
D RMDY18_16200 type II secretory pathway, prepilin signal peptidase PulO K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D RMDY18_06900 Flp pilus assembly protein, ATPase CpaF K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D RMDY18_03300 Flp pilus assembly protein, ATPase CpaF K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:rmu04812]
D RMDY18_13450 cell division GTPase K03531 ftsZ; cell division protein FtsZ
D RMDY18_14000 ATPase involved in chromosome partitioning K03496 parA; chromosome partitioning protein
D RMDY18_19850 ATPase involved in chromosome partitioning K03496 parA; chromosome partitioning protein
D RMDY18_13740 ATPase involved in chromosome partitioning K03496 parA; chromosome partitioning protein
D RMDY18_19840 predicted transcriptional regulator K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:rmu04147]
D RMDY18_16380 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D RMDY18_00600 glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D RMDY18_11150 glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D RMDY18_11140 3-phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D RMDY18_08360 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D RMDY18_00130 peptidyl-prolyl cis-trans isomerase-cyclophilin family K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D RMDY18_05360 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RMDY18_02460 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RMDY18_16800 molecular chaperone K04043 dnaK; molecular chaperone DnaK
D RMDY18_05930 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RMDY18_05380 IMP dehydrogenase/GMP reductase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D RMDY18_05390 IMP dehydrogenase/GMP reductase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D RMDY18_04700 GTPases - translation elongation factor K02358 tuf; elongation factor Tu
D RMDY18_10640 malate/lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D RMDY18_01290 predicted Na+-dependent transporter K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D RMDY18_13720 long-chain acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RMDY18_14180 acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RMDY18_02240 acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RMDY18_05010 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D RMDY18_14170 adenine/guanine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D RMDY18_00220 galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D RMDY18_13860 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D RMDY18_07210 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RMDY18_13210 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RMDY18_06320 delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D RMDY18_16610 AICAR transformylase/IMP cyclohydrolase PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D RMDY18_07290 pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RMDY18_10950 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D RMDY18_11070 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D RMDY18_17340 phosphoglycerate mutase 1 K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
C 02048 Prokaryotic defense system [BR:rmu02048]
D RMDY18_12250 uncharacterized protein predicted to be involved in DNA repair K15342 cas1; CRISP-associated protein Cas1
D RMDY18_12240 uncharacterized protein predicted to be involved in DNA repair K09951 cas2; CRISPR-associated protein Cas2
D RMDY18_12200 predicted helicase K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D RMDY18_12230 hypothetical protein K19131 csb1; CRISPR-associated protein Csb1
D RMDY18_12210 3-hydroxyacyl-CoA dehydrogenase K19132 csb2; CRISPR-associated protein Csb2
D RMDY18_12190 NAD-dependent aldehyde dehydrogenase K19133 csb3; CRISPR-associated protein Csb3
D RMDY18_09570 type I site-specific restriction-modification system, R (restriction) subunit K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D RMDY18_09560 restriction endonuclease S subunit K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D RMDY18_09550 type I restriction-modification system methyltransferase subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D RMDY18_06190 adenine specific DNA methylase Mod K00571 E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]
D RMDY18_01030 site-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D RMDY18_09360 restriction endonuclease K07448 mrr; restriction system protein
D RMDY18_15380 restriction endonuclease K07448 mrr; restriction system protein
D RMDY18_13450 cell division GTPase K03531 ftsZ; cell division protein FtsZ
D RMDY18_03660 glutamyl- and glutaminyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RMDY18_07700 glutamyl- and glutaminyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RMDY18_06600 cysteine sulfinate desulfinase/cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels [BR:rmu04040]
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:rmu01504]
D RMDY18_06420 predicted aminoglycoside phosphotransferase K06979 mph; macrolide phosphotransferase
D RMDY18_19370 permease of the major facilitator superfamily K08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein
D RMDY18_18870 Na+-driven multidrug efflux pump K18908 mepA; MATE family, multidrug efflux pump
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:rmu03100]
D RMDY18_t00280 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RMDY18_t00020 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RMDY18_t00030 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RMDY18_t00300 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RMDY18_t00330 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RMDY18_t00440 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RMDY18_t00090 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RMDY18_t00390 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D RMDY18_t00470 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D RMDY18_t00350 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D RMDY18_t00210 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D RMDY18_t00400 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D RMDY18_t00320 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RMDY18_t00220 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RMDY18_t00480 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RMDY18_t00200 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RMDY18_t00360 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RMDY18_t00260 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RMDY18_t00420 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RMDY18_t00310 tRNA-His K14226 tRNA-His; tRNA His
D RMDY18_t00010 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D RMDY18_t00250 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RMDY18_t00490 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RMDY18_t00290 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RMDY18_t00170 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RMDY18_t00410 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RMDY18_t00040 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D RMDY18_t00180 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D RMDY18_t00190 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D RMDY18_t00380 tRNA-Met K14230 tRNA-Met; tRNA Met
D RMDY18_t00130 tRNA-Met K14230 tRNA-Met; tRNA Met
D RMDY18_t00160 tRNA-Met K14230 tRNA-Met; tRNA Met
D RMDY18_t00460 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D RMDY18_t00370 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RMDY18_t00270 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RMDY18_t00100 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RMDY18_t00060 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RMDY18_t00450 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RMDY18_t00070 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RMDY18_t00050 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RMDY18_t00120 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RMDY18_t00140 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RMDY18_t00080 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RMDY18_t00430 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RMDY18_t00150 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D RMDY18_t00110 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D RMDY18_t00230 tRNA-Val K14237 tRNA-Val; tRNA Val
D RMDY18_t00240 tRNA-Val K14237 tRNA-Val; tRNA Val
D RMDY18_t00340 tRNA-Val K14237 tRNA-Val; tRNA Val
D RMDY18_r00050 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RMDY18_r00090 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RMDY18_r00110 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RMDY18_r00040 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RMDY18_r00080 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RMDY18_r00100 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RMDY18_r00070 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RMDY18_r00020 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RMDY18_r00010 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RMDY18_r00030 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RMDY18_r00060 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D RMDY18_07420 Zn-dependent alcohol dehydrogenase, class III K00153 E1.1.1.306; S-(hydroxymethyl)mycothiol dehydrogenase [EC:1.1.1.306]
D RMDY18_16690 aldo/keto reductase related to diketogulonate reductase K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346]
D RMDY18_08240 nucleoside-diphosphate-sugar epimerase K22320 oleD; 2-alkyl-3-oxoalkanoate reductase [EC:1.1.1.412]
D RMDY18_19080 predicted oxidoreductase K23107 yajO; 1-deoxyxylulose-5-phosphate synthase [EC:1.1.-.-]
D RMDY18_15500 pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component K23842 lpdA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D RMDY18_02020 NADPH:quinone reductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D RMDY18_13130 NADPH:quinone reductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D RMDY18_13730 pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component K17883 mtr; mycothione reductase [EC:1.8.1.15]
D RMDY18_12060 peptide methionine sulfoxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D RMDY18_12310 hypothetical protein K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D RMDY18_03120 sulfite oxidase K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-]
D RMDY18_07470 peroxiredoxin K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D RMDY18_05800 peroxiredoxin K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D RMDY18_18490 uncharacterized conserved protein K04756 ahpD; lipoyl-dependent peroxiredoxin subunit D [EC:1.11.1.28]
D RMDY18_18480 peroxiredoxin K24126 ahpC; lipoyl-dependent peroxiredoxin subunit C [EC:1.11.1.28]
D RMDY18_17580 predicted iron-dependent peroxidase K07223 yfeX; porphyrinogen peroxidase [EC:1.11.1.-]
D RMDY18_17440 hemoglobin-like flavoprotein K05916 hmp; nitric oxide dioxygenase [EC:1.14.12.17]
D RMDY18_18290 coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase K20938 ladA; long-chain alkane monooxygenase [EC:1.14.14.28]
D RMDY18_08470 uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides K21481 mhuD; heme oxygenase (mycobilin-producing) [EC:1.14.99.57]
D RMDY18_18220 NADPH-dependent glutamate synthase beta chain K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D RMDY18_00200 glutaredoxin-related protein K18917 mrx1; mycoredoxin [EC:1.20.4.3]
D RMDY18_02230 acetyltransferase K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79]
D RMDY18_04160 acetyltransferase K15520 mshD; mycothiol synthase [EC:2.3.1.189]
D RMDY18_08260 3-oxoacyl-[acyl-carrier-protein] synthase III K22317 oleA; acyl-CoA:acyl-CoA alkyltransferase [EC:2.3.3.20]
D RMDY18_05240 glycosyltransferase K15521 mshA; D-inositol-3-phosphate glycosyltransferase [EC:2.4.1.250]
D RMDY18_08300 prolipoprotein diacylglyceryltransferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D RMDY18_08160 predicted kinase related to dihydroxyacetone kinase K07030 fakA; fatty acid kinase [EC:2.7.2.18]
D RMDY18_13200 glutamine synthetase adenylyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D RMDY18_01720 predicted nucleic-acid-binding protein K07067 disA; diadenylate cyclase [EC:2.7.7.85]
D RMDY18_13710 esterase/lipase K03928 yvaK; carboxylesterase [EC:3.1.1.1]
D RMDY18_17640 predicted thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D RMDY18_06180 predicted metal-dependent phosphoesterase K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D RMDY18_01970 phosphohistidine phosphatase SixA K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D RMDY18_16020 Mg-dependent DNase K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D RMDY18_12810 predicted nuclease of the RecB family K07503 nucS; endonuclease [EC:3.1.-.-]
D RMDY18_07730 N-formylmethionyl-tRNA deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D RMDY18_11900 N-formylmethionyl-tRNA deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D RMDY18_05960 uncharacterized protein K15525 mshB; N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase [EC:3.5.1.103]
D RMDY18_09080 predicted xylanase/chitin deacetylase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D RMDY18_09130 predicted xylanase/chitin deacetylase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D RMDY18_16220 uncharacterized protein K18455 mca; mycothiol S-conjugate amidase [EC:3.5.1.115]
D RMDY18_08250 acyl-CoA synthetase K25044 oleBC; cis-3-alkyl-4-acyloxetan-2-one decarboxylase / olefin beta-lactone synthetase [EC:4.1.1.114 6.1.3.1]
D RMDY18_05210 predicted sugar kinase K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D RMDY18_10400 FKBP-type peptidyl-prolyl cis-trans isomerase 1 K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8]
D RMDY18_10380 FKBP-type peptidyl-prolyl cis-trans isomerase 1 K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8]
D RMDY18_10290 cysteinyl-tRNA synthetase K15526 mshC; L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [EC:6.3.1.13]
D RMDY18_17860 cation transport ATPase K12952 ctpE; cation-transporting P-type ATPase E [EC:7.2.2.-]
C 99981 Carbohydrate metabolism
D RMDY18_03090 Fe-S oxidoreductase K18928 lldE; L-lactate dehydrogenase complex protein LldE
D RMDY18_03100 uncharacterized conserved protein containing a ferredoxin-like domain K18929 lldF; L-lactate dehydrogenase complex protein LldF
D RMDY18_03110 uncharacterized conserved protein K00782 lldG; L-lactate dehydrogenase complex protein LldG
C 99982 Energy metabolism
D RMDY18_17500 ferredoxin K04755 fdx; ferredoxin, 2Fe-2S
D RMDY18_15670 NifU homolog involved in Fe-S cluster formation K04488 iscU; nitrogen fixation protein NifU and related proteins
D RMDY18_02510 pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component K21739 rclA; probable pyridine nucleotide-disulfide oxidoreductase
C 99983 Lipid metabolism
D RMDY18_11160 uncharacterized protein conserved in archaea K25232 fakB; fatty acid kinase fatty acid binding subunit
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D RMDY18_13400 predicted enzyme with a TIM-barrel fold K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
D RMDY18_15280 uncharacterized protein conserved in archaea K21687 rpfA; resuscitation-promoting factor RpfA
D RMDY18_16000 glycosyltransferase involved in LPS biosynthesis K07270 K07270; glycosyl transferase, family 25
D RMDY18_16010 glycosyltransferase involved in LPS biosynthesis K07270 K07270; glycosyl transferase, family 25
C 99987 Cofactor metabolism
C 99988 Secondary metabolism
C 99999 Others
D RMDY18_15110 predicted esterase K06999 K06999; phospholipase/carboxylesterase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D RMDY18_16700 transcriptional accessory protein K06959 tex; protein Tex
C 99974 Translation
C 99975 Protein processing
D RMDY18_12690 uncharacterized conserved protein K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D RMDY18_08640 FKBP-type peptidyl-prolyl cis-trans isomerase K03545 tig; trigger factor
D RMDY18_06990 tmRNA-binding protein K03664 smpB; SsrA-binding protein
D RMDY18_09150 glutaredoxin-related protein K06191 nrdH; glutaredoxin-like protein NrdH
D RMDY18_11780 predicted ATPase with chaperone activity K07391 comM; magnesium chelatase family protein
D RMDY18_05850 predicted redox protein K07397 yhfA; putative redox protein
C 99976 Replication and repair
D RMDY18_11790 predicted endonuclease distantly related to archaeal Holliday junction resolvase K07460 yraN; putative endonuclease
D RMDY18_11770 predicted Rossmann fold nucleotide-binding protein involved in DNA uptake K04096 smf; DNA processing protein
D RMDY18_09710 ATPase related to the helicase subunit of the Holliday junction resolvase K07478 ycaJ; putative ATPase
D RMDY18_06490 transposase and inactivated derivative K07493 K07493; putative transposase
C 99979 Viral proteins
C 99998 Others
D RMDY18_06530 phage shock protein A K03969 pspA; phage shock protein A
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D RMDY18_17650 gamma-aminobutyrate permease K03293 TC.AAT; amino acid transporter, AAT family
D RMDY18_00710 dipeptide/tripeptide permease K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D RMDY18_00080 phosphate/sulphate permease K03306 TC.PIT; inorganic phosphate transporter, PiT family
D RMDY18_01770 phosphate/sulphate permease K03306 TC.PIT; inorganic phosphate transporter, PiT family
D RMDY18_03830 Na+-dependent transporter of the SNF family K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D RMDY18_19510 Na+/alanine symporter K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
C 99978 Cell growth
D RMDY18_15870 uncharacterized protein conserved in archaea K06320 cgeB; spore maturation protein CgeB
D RMDY18_19880 predicted RNA-binding protein K06346 jag; spoIIIJ-associated protein
C 99993 Cell motility
C 99995 Signaling proteins
D RMDY18_05950 predicted membrane GTPase involved in stress response K06207 typA; GTP-binding protein
D RMDY18_17410 ACT domain-containing protein K07166 K07166; ACT domain-containing protein
D RMDY18_10190 phosphate starvation-inducible protein PhoH K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D RMDY18_03940 uncharacterized protein conserved in archaea K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
C 99994 Others
D RMDY18_11390 membrane protein TerC, possibly involved in tellurium resistance K05794 terC; tellurite resistance protein TerC
B
B 09194 Poorly characterized
C 99996 General function prediction only
D RMDY18_03360 distinct helicase family protein K06877 K06877; DEAD/DEAH box helicase domain-containing protein
D RMDY18_00380 predicted drug exporter of the RND superfamily K06994 K06994; putative drug exporter of the RND superfamily
D RMDY18_10890 ABC-type transport system involved in Fe-S cluster assembly, permease component K09014 sufB; Fe-S cluster assembly protein SufB
D RMDY18_10880 ABC-type transport system involved in Fe-S cluster assembly, permease component K09015 sufD; Fe-S cluster assembly protein SufD
D RMDY18_07440 predicted membrane protein K07058 K07058; membrane protein
D RMDY18_03370 predicted sulfurtransferase K07146 K07146; UPF0176 protein
D RMDY18_01870 uncharacterized membrane-associated protein K03975 dedA; membrane-associated protein
D RMDY18_01910 predicted membrane protein K01421 yhgE; putative membrane protein
D RMDY18_01620 predicted membrane protein K08981 K08981; putative membrane protein
D RMDY18_13900 predicted membrane protein K08987 K08987; putative membrane protein
D RMDY18_18280 uncharacterized protein conserved in archaea K09858 K09858; SEC-C motif domain protein
D RMDY18_05760 uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism K06193 phnA; protein PhnA
C 99997 Function unknown
D RMDY18_18630 predicted CoA-binding protein K06929 K06929; uncharacterized protein
D RMDY18_08420 predicted RNA-binding protein K06960 K06960; uncharacterized protein
D RMDY18_14870 predicted acetyltransferase K06976 K06976; uncharacterized protein
D RMDY18_03450 predicted flavin-nucleotide-binding protein K07005 K07005; uncharacterized protein
D RMDY18_12800 predicted hydrolase of the alpha/beta superfamily K07018 K07018; uncharacterized protein
D RMDY18_07590 predicted nucleotidyltransferase K07075 K07075; uncharacterized protein
D RMDY18_12510 predicted permease K07090 K07090; uncharacterized protein
D RMDY18_19900 uncharacterized conserved protein K08998 K08998; uncharacterized protein
D RMDY18_16340 uncharacterized conserved protein K09009 K09009; uncharacterized protein
D RMDY18_06480 uncharacterized conserved protein K09118 K09118; uncharacterized protein
D RMDY18_17400 uncharacterized conserved protein K09157 K09157; uncharacterized protein
D RMDY18_01610 uncharacterized conserved protein K09167 K09167; uncharacterized protein
D RMDY18_15350 uncharacterized protein conserved in archaea K09780 K09780; uncharacterized protein
D RMDY18_11910 uncharacterized protein conserved in archaea K09861 K09861; uncharacterized protein
D RMDY18_18770 uncharacterized protein conserved in archaea K09940 K09940; uncharacterized protein
D RMDY18_10140 uncharacterized protein conserved in archaea K09940 K09940; uncharacterized protein
D RMDY18_18230 uncharacterized protein conserved in archaea K09956 K09956; uncharacterized protein
D RMDY18_01780 phosphate transport regulator K07220 K07220; uncharacterized protein
D RMDY18_14820 predicted nucleic-acid-binding protein implicated in transcription termination K07742 ylxR; uncharacterized protein
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#
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 14, 2024