SSDB Best Search Result

Entry:ppe:PEPE_1572 (178 a.a.)
Name:DNA-directed RNA polymerase, delta subunit
KO:K03048 DNA-directed RNA polymerase subunit delta

Search Result : 184 hits (reference genome only)

                 Entry                                       KO      len   SW-score  identity  overlap  
------------------------------------------------------------------ -------------------------------------
lpl:lp_0480 DNA-directed RNA polymerase, delta subunit  K03048     199      815     0.665      191     
lcb:LCABL_27400 DNA-directed RNA polymerase, delta subu K03048     223      756     0.609      192     
ljo:LJ_0223 DNA-directed RNA polymerase delta chain     K03048     180      729     0.624      178     
efa:EF1146 DNA-directed RNA polymerase, delta subunit,  K03048     208      607     0.518      193     
spy:SPy_1895 putative DNA-directed RNA polymerase (delt K03048     191      510     0.479      188     
spr:spr0437 RNA polymerase (delta subunit)              K03048     200      507     0.476      187     
spn:SP_0493 putative DNA-directed RNA polymerase, delta K03048     200      507     0.476      187     
lla:L0141 DNA-directed RNA polymerase delta chain       K03048     187      463     0.420      188     
lmo:lmo2560 DNA-directed RNA polymerase subunit delta   K03048     178      459     0.440      175     
llm:llmg_0608 DNA-directed RNA polymerase delta chain   K03048     188      458     0.415      188     
lin:lin2705 similar to B. subtilis RNA polymerase delta K03048     178      457     0.440      175     
smu:SMU_96 putative DNA-directed RNA polymerase, delta  K03048     162      423     0.471      155     
btk:BT9727_5023 DNA-directed RNA polymerase, delta subu K03048     176      394     0.352      182     
bce:BC5339 DNA-directed RNA polymerase delta chain      K03048     177      390     0.357      185     
bsu:BSU37160 DNA-directed RNA polymerase subunit delta  K03048     173      383     0.356      180     
ban:BA_5584 DNA-directed RNA polymerase, delta subunit  K03048     175      382     0.343      181     
ooe:OEOE_1788 DNA-directed RNA polymerase, delta subuni K03048     195      376     0.382      186     
bpf:BpOF4_07030 DNA-directed RNA polymerase subunit del K03048     167      349     0.352      179     
bha:BH3793 DNA-directed RNA polymerase delta subunit    K03048     164      347     0.347      170     
sao:SAOUHSC_02369 DNA-directed RNA polymerase subunit d K03048     176      341     0.358      173     
oih:OB3008 DNA-directed RNA polymerase delta chain      K03048     173      341     0.367      180     
sau:SA1930 probable DNA-directed RNA polymerase delta s K03048     176      341     0.358      173     
gtn:GTNG_3335 DNA-directed RNA polymerase, delta subuni K03048     185      329     0.343      181     
ser:SERP1735 DNA-directed RNA polymerase, delta subunit K03048     178      314     0.337      184     
pjd:Pjdr2_0136 DNA-directed RNA polymerase delta subuni K03048     193      260     0.277      177     
uma:UMAG_01673 hypothetical protein                     K14546     855      178     0.329      146     
mtr:11441339 NAD-dependent protein deacetylase HST1                236      172     0.267      161     
vg:6940573 Mycobacterium phage Troll4; gp60                        302      168     0.324      111     
spu:581523 acidic leucine-rich nuclear phosphoprotein 3 K18646     318      165     0.272      180     
vvi:100259959 uncharacterized protein LOC100259959                 174      164     0.322      118     
pfa:PF3D7_0108300 conserved Plasmodium protein, unknown           2221      163     0.307      127     
tcr:507649.70 nucleolar RNA-binding protein                        356      163     0.310      116     
tva:75643808 adhesin-related family                                567      161     0.316      95      
sce:YOR054C phosphopantothenoylcysteine decarboxylase c            674      161     0.373      83      
yli:2912601 U3 small nucleolar ribonucleoprotein LCP5   K14765     335      160     0.264      178     
cne:CNI03120 hypothetical protein                                  449      160     0.333      99      
zga:ZOBELLIA_640 Hypothetical membrane protein                    1259      158     0.289      149     
mdm:103419738 uncharacterized protein isoform X1                  1993      156     0.333      105     
sly:138347552 uncharacterized protein                              202      153     0.274      95      
ani:ANIA_03551 hypothetical protein                               1124      153     0.337      83      
aag:5575134 uncharacterized protein LOC5575134 isoform            1313      152     0.248      153     
ola:101166831 calsequestrin-1 isoform X1                K23468     455      151     0.260      169     
tru:101061700 uncharacterized protein LOC101061700                 376      149     0.333      84      
kla:KLLA0_D19250g uncharacterized protein               K11676     340      149     0.255      94      
dre:100334082 uncharacterized protein zmp:0000000906               733      149     0.376      93      
dme:Dmel_CG7839 nucleolar complex protein 1             K14832    1174      149     0.393      84      
oas:101107846 nucleolin isoform X5                      K11294     722      148     0.420      69      
gmx:100815673 prostatic spermine-binding protein                   187      148     0.349      83      
mdo:100024845 UV stimulated scaffold protein A          K23720     791      148     0.337      89      
tbr:Tb927.8.760 nucleolar RNA-binding protein                      328      147     0.296      135     
aor:AO090124000089 unnamed protein product; predicted a            816      147     0.344      93      
ehi:EHI_007510 hypothetical protein                                474      147     0.321      84      
bmor:101740802 uncharacterized protein LOC101740802                539      146     0.333      78      
ame:727170 peptidyl-prolyl cis-trans isomerase FKBP53 i            589      146     0.333      87      
sot:102602410 phosphopantothenoylcysteine decarboxylase            154      145     0.300      110     
mmi:MMAR_3768 ribonuclease E Rne                        K08300    1017      145     0.280      168     
nve:116605635 uncharacterized protein LOC116605635                 840      145     0.480      50      
osa:4344867 F-box protein SKIP19                                   447      145     0.289      97      
ath:AT3G14900 uncharacterized protein                              611      144     0.301      146     
cal:CAALFM_CR00980CA phosphopantothenoylcysteine decarb K01598     731      144     0.245      98      
ptr:737113 germ cell nuclear acidic protein isoform X1  K26957     707      143     0.356      90      
ppp:112285058 uncharacterized protein                   K14546     687      142     0.235      170     
cre:CHLRE_12g521200v5 uncharacterized protein           K10754    1183      142     0.386      70      
aga:1279850 U3 small nucleolar ribonucleoprotein protei K14559     717      141     0.321      112     
mul:MUL_3715 ribonuclease E Rne                         K08300     988      141     0.291      158     
xla:379919 calsequestrin 1 S homeolog precursor         K23468     428      141     0.310      113     
smo:SELMODRAFT_272232 hypothetical protein                         317      140     0.274      135     
ppa:PAS_chr2-1_0871 hypothetical protein                K01598     532      140     0.424      66      
xtr:100216242 PHD finger protein 14                     K27397     927      140     0.251      171     
nta:107812482 uncharacterized protein LOC107812482                 176      139     0.354      65      
amj:102558960 PHD finger protein 14                     K27397     940      139     0.317      120     
apla:101805345 RNA-binding protein 33 isoform X1        K25078    1195      139     0.282      149     
pti:PHATRDRAFT_46394 hypothetical protein                          673      139     0.372      94      
dsy:DSY4945 hypothetical protein                        K03048     169      139     0.248      133     
fvr:FVEG_07891 hypothetical protein                                323      138     0.270      159     
cge:113837575 calsequestrin-1-like                                 195      138     0.360      86      
hsa:93953 germ cell nuclear acidic protein              K26957     691      138     0.424      66      
tgo:7896675 nuclear factor NF3                                     311      138     0.452      62      
tgu:100223551 PHD finger protein 14 isoform X1          K27397     951      138     0.325      120     
tps:THAPS_23548 predicted protein                                  961      138     0.346      104     
fgr:FGSG_07377 hypothetical protein                                310      138     0.283      159     
mgr:MGG_10452 hypothetical protein                                 245      138     0.323      96      
cjc:103790271 germ cell nuclear acidic protein isoform  K26957     532      137     0.287      115     
afm:AFUA_2G13570 ribosome biogenesis protein (Bms1)     K14569    1182      137     0.293      133     
ptex:113444205 LOW QUALITY PROTEIN: aprataxin and PNK-l K13295     565      136     0.413      75      
zma:100283058 nucleolin                                            176      136     0.326      92      
bta:497013 nucleolin                                    K11294     720      136     0.391      69      
ddi:DDB_G0271272 DNA polymerase V family protein        K02331    1461      136     0.261      157     
mpn:MPN_024 DNA-directed RNA polymerase delta subunit   K03048     146      136     0.291      103     
rcu:8261288 acidic leucine-rich nuclear phosphoprotein             321      135     0.305      95      
cin:100180309 periodic tryptophan protein 1 homolog     K14791     644      135     0.298      121     
scl:sce2028 hypothetical protein                        K06024     579      135     0.330      94      
gga:124417579 uncharacterized protein DDB_G0290685-like            808      135     0.349      86      
rfq:117016112 glutamic acid-rich protein-like                      227      134     0.327      104     
dne:112980320 A-kinase anchor protein 6 isoform X1      K16523    2325      134     0.283      138     
pmur:107292743 protein virilizer homolog                K22910    1766      134     0.280      132     
azc:AZC_3264 putative DNA segregation ATPase            K03466    1036      134     0.269      156     
lma:LMJF_26_1300 hypothetical protein                             1190      134     0.263      186     
tre:TRIREDRAFT_108421 hypothetical protein              K02326     293      131     0.341      85      
ecb:100061218 DDB1- and CUL4-associated factor 1 isofor K11789    1515      131     0.349      86      
ncr:NCU05779 hypothetical protein                                  410      131     0.321      81      
cfa:100855502 DDB1- and CUL4-associated factor 1 isofor K11789    1510      131     0.349      86      
ssc:100157879 ribosome biogenesis protein BMS1 homolog  K14569    1284      131     0.309      97      
cit:102610020 uncharacterized protein LOC102610020                 213      130     0.320      100     
clv:102096580 LOW QUALITY PROTEIN: PHD finger protein 1            369      130     0.317      120     
mmu:241112 ciliogenesis-associated TTC17-interacting pr K25788     553      130     0.272      103     
cel:CELE_Y67D8C.5 HECT-type E3 ubiquitin transferase    K10592    4185      129     0.330      100     
maj:MAA_04597 RNA recognition motif domain protein      K15561     850      128     0.350      80      
hma:rrnAC3018 protporphyrin IX magnesium chelatase      K03404     719      128     0.267      131     
ocu:127482809 prostatic spermine-binding protein-like              214      126     0.300      90      
gpo:GPOL_c12570 hypothetical protein                               411      126     0.275      142     
hvo:HVO_0186 Sec-independent protein translocase subuni K03118     441      126     0.311      90      
tca:661943 surface protein                                         547      126     0.318      85      
gla:GL50803_0014584 Kelch repeat-containing protein                982      126     0.283      92      
nca:Noca_3764 hypothetical protein                                 245      126     0.305      141     
mva:Mvan_6043 conserved hypothetical protein                       601      126     0.274      117     
msm:MSMEG_4626 ribonuclease, Rne/Rng family protein     K08300    1037      126     0.337      92      
cpoc:100728719 WD repeat-containing protein 43          K14546     664      125     0.289      76      
fca:101097051 DDB1- and CUL4-associated factor 1 isofor K11789    1544      125     0.323      96      
rno:298320 acrosomal protein KIAA1210 homolog                     2016      125     0.282      103     
ase:ACPL_6362 Replicase polyprotein 1ab                            315      124     0.346      78      
mcc:705033 zinc finger and BTB domain-containing protei K10494     620      124     0.458      48      
mxa:MXAN_2257 FHA domain protein                                   473      124     0.379      66      
hal:VNG_0954C conserved hypothetical protein            K23986     504      124     0.256      133     
mab:MAB_3669 Conserved hypothetical protein                        442      121     0.313      83      
tde:TDE_2071 hypothetical protein                                   90      121     0.349      63      
csv:101214790 protein TRAUCO                            K14964     433      120     0.344      96      
ret:RHE_CH00099 hypothetical conserved protein                     127      120     0.313      67      
mea:Mex_1p3916 putative ribonuclease E or G             K08300    1054      119     0.351      74      
rle:RL0109 conserved hypothetical protein                          127      119     0.295      95      
pif:PITG_00065 hypothetical protein                                794      118     0.317      82      
sil:SPO1999 Collagen domain protein                                988      118     0.339      62      
rso:RSp0869 hrpf protein                                K03223     301      118     0.377      77      
smm:Smp_152570 hypothetical protein                     K25163    1225      117     0.321      78      
atu:Atu8037 conserved hypothetical protein                         129      117     0.322      115     
phe:Phep_4103 conserved hypothetical protein                       406      116     0.259      143     
cgl:Cgl1135 Hypothetical protein                                   292      116     0.252      147     
mac:MA_0960 hypothetical protein (multi-domain)         K14201     521      116     0.354      65      
kfl:Kfla_6170 NusG antitermination factor               K02601     400      114     0.344      93      
afu:AF_1503 predicted coding region AF_1503                        338      114     0.406      69      
mta:Moth_1537 conserved hypothetical protein                       170      113     0.320      75      
ccr:CC_3590 hypothetical protein                                   188      113     0.330      88      
ssy:SLG_32780 hypothetical protein                                 382      112     0.320      97      
bhe:BH03030 Late control gene D protein                 K06905     435      112     0.267      180     
mge:MG_022 DNA-directed RNA polymerase, delta subunit   K03048     145      112     0.234      124     
cro:ROD_25971 putative prophage exported protein                   200      111     0.333      78      
sma:SAVERM_4508 putative secreted protein                          481      111     0.211      171     
pst:PSPTO_3604 heavy metal sensor histidine kinase      K07644     462      111     0.278      151     
pfr:PFREUD_19720 Hypothetical protein                              242      110     0.309      81      
sme:SMc00332 Hypothetical protein                                  129      110     0.298      121     
dde:Dde_3124 penicillin-binding protein, 1A family      K05366     807      109     0.259      147     
kpn:KPN_02302 hypothetical protein                                 479      108     0.267      90      
sur:STAUR_8127 uncharacterized protein                             185      107     0.356      59      
sco:SCO1672 hypothetical protein                                   267      107     0.369      65      
fps:FP1710 Hypothetical protein                                    135      106     0.328      64      
sen:SACE_5965 putative magnesium-chelatase subunit      K03404     716      106     0.264      182     
lil:LA_1950 hypothetical protein                                   163      106     0.312      77      
blo:BL1237 hypothetical protein                                    170      105     0.248      121     
sgr:SGR_5707 conserved hypothetical protein                        233      104     0.284      148     
rru:Rru_A1669 transcriptional regulator, MerR family               241      104     0.344      64      
ccyc:SCMU_20600 hypothetical protein                               110      103     0.319      91      
tpa:TP_0370 predicted coding region TP0370                         138      103     0.422      45      
mtu:Rv3776 hypothetical protein                                    519      103     0.248      129     
mtc:MT3885 hypothetical protein                                    542      103     0.248      129     
sno:Snov_3862 conserved hypothetical protein                       132      102     0.349      83      
gox:GOX2341 Putative phage protein                                 225      102     0.358      67      
spo:2543404 histone chaperone Chz1                                 113      101     0.260      73      
pae:PA4851 hypothetical protein                                    421      101     0.296      142     
sro:Sros_8539 hypothetical protein                                 381      100     0.264      140     
ana:alr2431 hypothetical protein                                   144      100     0.302      96      
amd:AMED_6455 TetR family transcriptional regulator                197       99     0.298      124     
reu:Reut_A0512 Protein of unknown function UPF0054      K07042     255       98     0.250      180     
swi:Swit_2459 hypothetical protein                                 106       97     0.275      102     
neu:NE0959 putative tetraheme c-cytochrome                         233       96     0.375      40      
sct:SCAT_3055 protein of unknown function                          360       95     0.280      118     
rcp:RCAP_rcc01988 conserved hypothetical protein                   186       95     0.321      84      
ava:Ava_0241 conserved hypothetical protein                        144       95     0.296      98      
pde:Pden_3912 hypothetical protein                                  96       94     0.323      62      
rha:RHA1_ro01712 possible arabinofuranosidase                      329       94     0.273      77      
fnu:FN0829 unknown                                                  97       92     0.295      78      
nar:Saro_2440 TPR repeat protein                                   128       89     0.321      53      
bps:BPSL0746 hypothetical protein                                  120       88     0.392      51      
cja:CJA_3065 hypothetical protein                                  112       84     0.333      48      
ecs:ECs_4978 phage structural protein                               81       81     0.286      63      

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