SSDB Best Search Result

Entry:ssr:SALIVB_0171 (191 a.a.)
Name:DNA-directed RNA polymerase delta chain
KO:K03048 DNA-directed RNA polymerase subunit delta

Search Result : 218 hits (reference genome only)

                 Entry                                       KO      len   SW-score  identity  overlap  
------------------------------------------------------------------ -------------------------------------
spy:SPy_1895 putative DNA-directed RNA polymerase (delt K03048     191     1006     0.787      188     
spr:spr0437 RNA polymerase (delta subunit)              K03048     200      889     0.707      191     
spn:SP_0493 putative DNA-directed RNA polymerase, delta K03048     200      889     0.707      191     
smu:SMU_96 putative DNA-directed RNA polymerase, delta  K03048     162      822     0.741      162     
efa:EF1146 DNA-directed RNA polymerase, delta subunit,  K03048     208      682     0.577      201     
lcb:LCABL_27400 DNA-directed RNA polymerase, delta subu K03048     223      614     0.532      201     
lpl:lp_0480 DNA-directed RNA polymerase, delta subunit  K03048     199      613     0.522      203     
lla:L0141 DNA-directed RNA polymerase delta chain       K03048     187      604     0.505      196     
llm:llmg_0608 DNA-directed RNA polymerase delta chain   K03048     188      591     0.503      197     
ljo:LJ_0223 DNA-directed RNA polymerase delta chain     K03048     180      561     0.492      187     
lin:lin2705 similar to B. subtilis RNA polymerase delta K03048     178      394     0.405      200     
lmo:lmo2560 DNA-directed RNA polymerase subunit delta   K03048     178      389     0.388      188     
bce:BC5339 DNA-directed RNA polymerase delta chain      K03048     177      381     0.394      188     
btk:BT9727_5023 DNA-directed RNA polymerase, delta subu K03048     176      373     0.399      188     
ban:BA_5584 DNA-directed RNA polymerase, delta subunit  K03048     175      367     0.394      188     
ooe:OEOE_1788 DNA-directed RNA polymerase, delta subuni K03048     195      366     0.353      184     
bpf:BpOF4_07030 DNA-directed RNA polymerase subunit del K03048     167      355     0.352      182     
oih:OB3008 DNA-directed RNA polymerase delta chain      K03048     173      340     0.328      183     
bha:BH3793 DNA-directed RNA polymerase delta subunit    K03048     164      329     0.341      185     
gtn:GTNG_3335 DNA-directed RNA polymerase, delta subuni K03048     185      325     0.347      190     
ser:SERP1735 DNA-directed RNA polymerase, delta subunit K03048     178      321     0.319      188     
bsu:BSU37160 DNA-directed RNA polymerase subunit delta  K03048     173      320     0.330      191     
sao:SAOUHSC_02369 DNA-directed RNA polymerase subunit d K03048     176      309     0.314      191     
sau:SA1930 probable DNA-directed RNA polymerase delta s K03048     176      309     0.314      191     
pjd:Pjdr2_0136 DNA-directed RNA polymerase delta subuni K03048     193      263     0.291      189     
pfa:PF3D7_0108300 conserved Plasmodium protein, unknown           2221      233     0.298      161     
vg:55002282 Dickeya phage vB_DsoM_JA29; hypothetical pr            641      232     0.297      192     
tru:101069412 calsequestrin-1b                          K23468     464      231     0.299      137     
ehi:EHI_007620 hypothetical protein                                297      230     0.425      106     
tcr:507649.70 nucleolar RNA-binding protein                        356      229     0.338      130     
sly:138347552 uncharacterized protein                              202      225     0.330      106     
dre:445226 calsequestrin-1a precursor                   K23468     553      224     0.327      110     
ola:101164925 calsequestrin-1 isoform X1                K23468     528      222     0.297      155     
ani:ANIA_03551 hypothetical protein                               1124      214     0.371      105     
mtr:11412749 prostatic spermine-binding protein                    184      207     0.387      106     
spu:115922497 LOW QUALITY PROTEIN: prostatic spermine-b            219      202     0.397      78      
rno:116668 myelin transcription factor 1-like protein   K23193    1187      202     0.387      124     
tva:4769454 spectrin binding                                       932      201     0.276      134     
mmi:MMAR_3768 ribonuclease E Rne                        K08300    1017      198     0.382      110     
nve:116603960 coiled-coil domain-containing protein 154            894      198     0.333      129     
aag:5577193 46 kDa FK506-binding nuclear protein        K14826     378      196     0.365      126     
mmu:17933 myelin transcription factor 1-like protein is K23193    1187      196     0.363      124     
ddi:DDB_G0287891 BMS1-like ribosome biogenesis protein  K14569    1205      195     0.326      141     
kla:KLLA0_F08811g uncharacterized protein               K11360     636      194     0.371      105     
scl:sce2028 hypothetical protein                        K06024     579      193     0.358      106     
vvi:100259959 uncharacterized protein LOC100259959                 174      191     0.388      85      
cjc:103790271 germ cell nuclear acidic protein isoform  K26957     532      189     0.343      102     
pfr:PFREUD_19720 Hypothetical protein                              242      189     0.356      87      
osa:4344867 F-box protein SKIP19                                   447      189     0.280      100     
gga:124417579 uncharacterized protein DDB_G0290685-like            808      188     0.315      108     
fvr:FVEG_00563 E3 ubiquitin-protein ligase HUWE1        K10592    3993      186     0.328      131     
ocu:127482809 prostatic spermine-binding protein-like              214      186     0.345      110     
rcu:8268276 nucleolin                                              174      186     0.393      107     
aga:1276500 aspartyl/asparaginyl beta-hydroxylase isofo           1139      186     0.361      108     
gmx:100777899 E3 ubiquitin-protein ligase UPL1          K10592    3649      184     0.346      130     
ame:113218556 glutamic acid-rich protein-like                      483      184     0.379      87      
mul:MUL_3715 ribonuclease E Rne                         K08300     988      183     0.317      142     
sce:YOR054C phosphopantothenoylcysteine decarboxylase c            674      183     0.347      95      
ssc:100626723 myelin transcription factor 1-like protei K23193    1202      183     0.333      111     
hsa:93953 germ cell nuclear acidic protein              K26957     691      182     0.336      134     
smo:SELMODRAFT_272232 hypothetical protein                         317      182     0.308      107     
pti:PHATRDRAFT_43040 hypothetical protein                          302      182     0.316      158     
ath:AT5G63740 RING/U-box superfamily protein                       226      181     0.368      76      
rfq:117016112 glutamic acid-rich protein-like                      227      180     0.366      112     
nta:107813164 uncharacterized protein LOC107813164                 193      180     0.429      77      
oas:132658638 protein PFC0760c-like                                342      179     0.317      101     
cit:102627231 phosphopantothenoylcysteine decarboxylase            168      179     0.379      95      
tbr:Tb927.8.760 nucleolar RNA-binding protein                      328      179     0.296      115     
cne:CND02650 conserved hypothetical protein             K13181     793      179     0.285      172     
lma:LMJF_07_0990 putative nucleolar RNA-binding protein            352      178     0.336      116     
csv:101214388 prostatic spermine-binding protein                   231      177     0.392      79      
zma:100284314 uncharacterized protein LOC100284314                 176      177     0.376      93      
mdm:103428053 uncharacterized protein isoform X4                   172      176     0.360      89      
tps:THAPSDRAFT_22056 predicted protein                             149      176     0.397      78      
ptr:737113 germ cell nuclear acidic protein isoform X1  K26957     707      176     0.290      155     
mdo:100024845 UV stimulated scaffold protein A          K23720     791      174     0.364      88      
ncr:NCU07586 hypothetical protein                                  301      174     0.302      116     
uma:UMAG_01673 hypothetical protein                     K14546     855      174     0.348      132     
mge:MG_022 DNA-directed RNA polymerase, delta subunit   K03048     145      174     0.296      142     
hal:VNG_0954C conserved hypothetical protein            K23986     504      174     0.255      184     
bta:497013 nucleolin                                    K11294     720      173     0.325      120     
amj:106737486 surface protein                                      589      172     0.347      101     
msm:MSMEG_4626 ribonuclease, Rne/Rng family protein     K08300    1037      172     0.402      102     
cfa:482954 myelin transcription factor 1-like protein i K23193    1210      172     0.365      126     
sot:102606193 uncharacterized LOC102606193                         549      171     0.330      109     
mva:Mvan_3947 ribonuclease, Rne/Rng family              K08300     961      170     0.383      81      
ptex:113449257 acidic leucine-rich nuclear phosphoprote K18648     260      169     0.294      119     
xla:379979 acidic leucine-rich nuclear phosphoprotein 3 K18648     263      169     0.285      158     
tgo:7896675 nuclear factor NF3                                     311      168     0.354      130     
tde:TDE_2071 hypothetical protein                                   90      168     0.371      89      
clv:102098976 inositol 1,4,5-trisphosphate receptor-int            662      167     0.328      116     
smm:Smp_030300.1 putative endoplasmin                             2126      166     0.298      168     
ecb:100034004 nucleolin                                 K11294     718      166     0.327      113     
tca:107398755 uncharacterized protein DDB_G0290685-like            845      166     0.253      170     
sil:SPO1999 Collagen domain protein                                988      166     0.299      107     
bmor:101740802 uncharacterized protein LOC101740802                539      165     0.304      115     
zga:ZOBELLIA_640 Hypothetical membrane protein                    1259      165     0.274      175     
mcc:720965 nucleolin isoform X1                         K11294     711      165     0.339      112     
mpn:MPN_024 DNA-directed RNA polymerase delta subunit   K03048     146      165     0.266      143     
cge:100750480 myelin transcription factor 1-like protei K23193    1189      164     0.328      122     
azc:AZC_3264 putative DNA segregation ATPase            K03466    1036      164     0.371      105     
yli:2912220 FK506-binding protein 3                     K14826     407      164     0.358      95      
mgr:MGG_03252 E3 ubiquitin-protein ligase ptr1 + RNA tr K10592    4069      164     0.303      119     
xtr:100135747 nucleolar transcription factor 1 isoform  K09273     700      164     0.393      89      
cel:CELE_Y71A12B.11 RNA polymerase sigma factor RpoD               286      164     0.305      105     
maj:MAA_02309 protein BFR2                              K14782     545      163     0.300      180     
ppa:PAS_chr3_0044 E3 ubiquitin ligase of the hect-domai K10592    3308      163     0.273      187     
ppp:112290324 uncharacterized protein                   K02331    1398      163     0.268      164     
mxa:MXAN_2257 FHA domain protein                                   473      163     0.408      76      
hma:rrnAC1035 unknown                                              565      162     0.296      98      
dme:Dmel_CG8108 Ciz1 zinc finger protein, isoform B                919      162     0.375      96      
apla:101805403 acidic leucine-rich nuclear phosphoprote K18646     281      161     0.230      187     
fca:101091863 myelin transcription factor 1-like protei K23193    1185      161     0.339      124     
hvo:HVO_B0206 uncharacterized protein                              557      160     0.382      76      
cpoc:100713288 acidic leucine-rich nuclear phosphoprote K18647     278      159     0.344      90      
aor:AO090011000458 unnamed protein product; predicted p K11272    1260      159     0.315      111     
cal:CAALFM_C603250WA Bmt4p                              K13682     781      159     0.340      97      
pmur:107283919 acidic leucine-rich nuclear phosphoprote K18646     248      157     0.301      113     
tre:TRIREDRAFT_2956 hypothetical protein                K10592    3995      157     0.402      82      
gpo:GPOL_c12570 hypothetical protein                               411      157     0.375      128     
tgu:100225647 histone-lysine N-methyltransferase SETD1B K11422    2004      157     0.301      176     
cin:108950064 uncharacterized SDCCAG3 family protein-li            490      157     0.331      142     
nca:Noca_3764 hypothetical protein                                 245      157     0.286      140     
afm:AFUA_1G04310 hypothetical protein                              239      156     0.278      133     
blo:BL1428 RNA polymerase principal sigma factor; sigma K03086     474      156     0.344      90      
dne:112986386 pre-rRNA-processing protein TSR1 homolog  K14799     809      154     0.251      179     
cre:CHLRE_11g475650v5 uncharacterized protein                      999      152     0.356      104     
fgr:FGSG_00633 hypothetical protein                     K10592    3991      152     0.319      113     
sen:SACE_0120 clumping factor B                                    223      152     0.318      110     
kpn:KPN_00994 putative cell surface SD repeat protein p           3944      151     0.252      147     
pif:PITG_18246 hypothetical protein                     K14832     902      150     0.262      145     
mab:MAB_3669 Conserved hypothetical protein                        442      149     0.370      108     
lil:LA_1950 hypothetical protein                                   163      149     0.386      70      
elm:ELI_3828 hypothetical protein                                  504      147     0.356      104     
ase:ACPL_6362 Replicase polyprotein 1ab                            315      146     0.256      195     
spo:2539855 ubiquitin ligase Doa10                      K10661    1242      145     0.245      196     
ssy:SLG_32780 hypothetical protein                                 382      143     0.323      124     
rso:RSp0869 hrpf protein                                K03223     301      142     0.449      69      
dsy:DSY4945 hypothetical protein                        K03048     169      139     0.273      154     
sgu:SGLAU_27385 hypothetical protein                               313      138     0.240      104     
rha:RHA1_ro00689 conserved hypothetical protein                    682      138     0.243      111     
ccr:CC_3590 hypothetical protein                                   188      137     0.337      95      
mea:Mex_1p3916 putative ribonuclease E or G             K08300    1054      136     0.356      101     
gla:GL50803_0014584 Kelch repeat-containing protein                982      136     0.350      100     
cth:Cthe_2724 DNA-directed RNA polymerase, beta subunit K03043    1250      136     0.286      98      
sma:SAVERM_4179 hypothetical protein                               183      136     0.259      166     
cgl:Cgl1135 Hypothetical protein                                   292      136     0.277      195     
npu:Npun_F4987 DNA-directed RNA polymerase, beta'' subu K03046    1349      135     0.342      79      
sno:Snov_2802 cobalt chelatase, pCobT subunit           K09883     659      134     0.276      156     
sty:HCM2.0017c hypothetical protein                                720      134     0.280      100     
bmf:BAB1_2022 Von Willebrand factor, type A:Cobalt chel K09883     633      133     0.268      153     
mac:MA_0960 hypothetical protein (multi-domain)         K14201     521      133     0.254      134     
cpe:CPE1738 pobable serine/threonine protein kinase     K12132     685      133     0.304      115     
kfl:Kfla_6170 NusG antitermination factor               K02601     400      130     0.287      115     
bms:BR2021 cobalamin biosynthesis protein, putative     K09883     633      130     0.268      153     
bme:BMEI0050 cobt protein                               K09883     633      130     0.268      153     
cau:Caur_0382 translation initiation factor IF-3        K02520     275      128     0.413      63      
ret:RHE_CH03820 cobalamin biosynthesis protein          K09883     633      127     0.355      76      
tte:TTE1282 hypothetical protein                                   158      127     0.279      122     
abo:ABO_1526 conserved hypothetical protein             K04659     502      126     0.261      134     
sro:Sros_6067 hypothetical protein                                 936      125     0.273      198     
rle:RL4348 putative aerobic cobaltochelatase            K09883     633      123     0.355      76      
atu:Atu8037 conserved hypothetical protein                         129      123     0.274      113     
cja:CJA_1910 cell division protein ZipA                 K03528     391      122     0.296      108     
cdf:CD630_12470 uncharacterised protein                            151      121     0.340      100     
mlo:mll3561 CobT protein                                K09883     632      121     0.243      152     
rcp:RCAP_rcc00835 cobaltochelatase, CobT subunit        K09883     624      120     0.270      152     
sco:SCO1672 hypothetical protein                                   267      120     0.264      201     
mtu:Rv2444c ribonuclease E                              K08300     953      120     0.329      76      
mtc:MT2520 cytoplasmic axial filament protein, putative K08300     621      120     0.329      76      
ral:Rumal_3762 periplasmic solute binding protein       K09815     328      119     0.261      157     
sgr:SGR_2136 hypothetical protein                                  245      119     0.261      134     
fps:FP1710 Hypothetical protein                                    135      119     0.318      85      
mta:Moth_1537 conserved hypothetical protein                       170      119     0.333      90      
syp:SYNPCC7002_A2301 conserved hypothetical protein                341      118     0.248      117     
cpy:Cphy_1930 toxin secretion/phage lysis holin                    250      118     0.272      162     
ecu:ECU01_0320 uncharacterized protein                             161      117     0.296      98      
syn:slr6096 type I restriction-modification system, M s            373      117     0.307      114     
sur:STAUR_4037 uncharacterized protein                             118      116     0.410      61      
lba:Lebu_0136 hypothetical protein                                 139      116     0.305      118     
bhe:BH00960 hypothetical protein                                   126      116     0.314      105     
rsp:RSP_1976 cobaltochelatase CobT subunit              K09883     619      115     0.242      149     
amd:AMED_7516 conserved hypothetical protein                       141      114     0.337      92      
tex:Teth514_1524 hypothetical protein                              153      114     0.298      84      
nar:Saro_2389 cobaltochelatase CobT subunit             K09883     604      114     0.259      116     
fnu:FN0829 unknown                                                  97      114     0.362      58      
cro:ROD_25971 putative prophage exported protein                   200      113     0.315      73      
nmr:Nmar_1325 hypothetical protein                                 483      110     0.337      86      
mba:Mbar_A1691 hypothetical protein                                127      110     0.371      70      
zmo:ZMO1794 conserved hypothetical protein                         107      110     0.298      104     
cje:Cj0251c highly acidic protein                                   51      110     0.383      47      
tpa:TP_0370 predicted coding region TP0370                         138      109     0.404      47      
phe:Phep_1573 conserved hypothetical protein                        61      108     0.371      62      
xac:XAC1537 conserved hypothetical protein              K18850     495      108     0.289      76      
ccyc:SCMU_20600 hypothetical protein                               110      107     0.342      73      
psb:Psyr_4403 conserved hypothetical protein                       440      107     0.242      178     
gox:GOX0599 Hypothetical protein                                   122      107     0.350      60      
ana:all8554 unknown protein                             K07454     335      107     0.266      109     
xau:Xaut_1113 conserved hypothetical protein                       130      106     0.371      70      
son:SO_1849 uncharacterized protein                                179      105     0.373      51      
cdn:BN940_14676 hypothetical protein                               169      102     0.280      100     
ava:Ava_0286 WD-40 repeat-containing protein                       386      102     0.263      133     
stm:STM3341 stringent starvation protein B              K03600     166      102     0.375      48      
swi:Swit_2459 hypothetical protein                                 106      101     0.390      59      
wol:WD_0708 HesB/YadR/YfhF family protein                          153      101     0.514      35      
neu:NE0959 putative tetraheme c-cytochrome                         233      101     0.412      51      
sme:SMc00332 Hypothetical protein                                  129      100     0.252      115     
hpj:jhp_0693 putative                                               48       99     0.360      50      
bpe:BP3235 hypothetical protein                                    171       97     0.234      107     
hpy:HP_0756 predicted coding region HP0756                          48       96     0.360      50      
nfa:NFA_16110 hypothetical protein                                 156       95     0.388      49      
pde:Pden_3912 hypothetical protein                                  96       94     0.253      75      
rru:Rru_A2205 Protein of unknown function DUF1321       K09985     196       93     0.426      47      
lpn:lpg2441 DNA binding protein                                    157       93     0.278      72      
acb:A1S_1680 hypothetical protein                                   66       92     0.308      65      
cst:CLOST_0236 exported protein of unknown function                 99       91     0.292      65      
mar:MAE_19070 unknown protein                                       94       88     0.328      61      
pto:PTO1480 hypothetical protein                                    24       72     0.526      19      

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