Arvicola amphibius (Eurasian water vole): 119823333
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Entry
119823333 CDS
T08327
Symbol
Col13a1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XIII) chain
KO
K16617
collagen type XIII alpha
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
119823333 (Col13a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
aamp00536
]
119823333 (Col13a1)
Glycosaminoglycan binding proteins [BR:
aamp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119823333 (Col13a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
119823333
NCBI-ProteinID:
XP_038199218
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All DBs
Position
9:complement(103780932..103914746)
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AA seq
702 aa
AA seq
DB search
MVAERARKAAATGTRGPGSWARLGPXTVALAELCARLPSPGCCGLLALALCSLALSPARH
LSSAELQARVLRLEAERGEQQMEKAILGRVNQLLDEKWKFYSRRRREAPKMSPGCNCPPG
PPGPTGRPGLPGDKGAIGMPGRVGVKGQPGEKGAPGDAGMSIIGPRGPPGQPGTRGFPGF
PGPIGLDGKPGHPGPKGETGLVGPRGQPGPQGQKGEKGQCDEYPHREHPGSILAALCSSP
IIALKGEQGQAGIQGPPGPPGPPGPSGPLGHPGLPGPIGPPGLPGPPGAKGDPGIQGYHG
RKGERGMPGMPGKHGAKGAPGIAVAGLKGEPGTPGAKGEKGDAGNAIGGGRGEPGPPGLP
GPPGPKGEAGVDGQAGPPGQQGDKGQPGAAGVQGPAGPKGAKGEPGKGEMVDYNGNINEA
LQEIRTLALMGPPGLPGQTGPPGPPGSPGQRGEIGLPGPPGHDGDKGPRGKPGDMGPAGP
QGPPGKDGPPGMKGETGPPGSPGEKGETGQAGPQGLDGPTGEKGEPGDEGRPGATGLPGP
IGLPGFTGEKGEAGEKGDPGAEVPGPPGPEGPPGPPGLQGVPGPKGEAGLDGSKGEKGSQ
GEKGDXGPLGLPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNR
GERGKKGSRGPKGDKGDQGAPGLDAPCPLGEDGLPVQGCWNK
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atggtggcggagcgcgcccgcaaagcggcagccacaggcactcgcggccctgggagctgg
gcgcgtctgggcccgnngacggtggcgctggcggagctgtgcgcgaggctgccgagcccc
gggtgctgcggactgctggcgctggcgctgtgctcgctggcgcttagccctgctcgccac
ctttcgagcgccgagctgcaggcccgggtgctgcgcctggaagcagagcgcggggagcag
caaatggagaaagctattttgggacgagtcaaccaactgctggacgagaaatggaagttt
tactcgcgcaggcgccgggaggcccccaagatgtctccaggatgtaactgcccaccagga
cctcctggccccacgggaagacctggactccctggggacaagggtgccatcgggatgcct
ggacgtgtgggtgtcaaaggtcaaccaggcgagaagggtgcccctggagatgcggggatg
tccatcatcgggcctcgaggcccccctggtcagccaggcactcgaggcttccctggattt
ccgggtcccattggtcttgacggcaagccgggccaccctggacctaaaggggagacgggc
ctggtgggtccccgcggacaaccgggccctcaggggcaaaagggagaaaagggtcagtgt
gacgagtacccacaccgggagcacccaggcagcatcctagcagctctgtgctccagcccg
ataattgccctgaagggggaacaaggccaggctggcatccaaggccctccagggccacca
ggccccccaggaccaagtggccctctgggacacccaggactgccagggcctatagggcca
cctggtttacctgggcctcctggagcaaagggagacccagggatccagggctaccatggc
cgcaagggagaacggggcatgccgggaatgcccggcaagcatggagccaagggggctcct
gggatcgccgtggccggattgaagggcgagcctgggactccaggagccaagggagaaaaa
ggtgatgcaggcaatgccattggaggaggcagaggggagcctggccccccagggctccct
gggccccctgggccaaagggagaagctggtgtggatggccaggctggacctccaggacag
caaggagacaaggggcagccaggagcagctggggtgcagggaccagctggccccaagggt
gccaagggtgaacccgggaagggagagatggtggattacaatggaaacatcaatgaggcg
cttcaggagatcaggacactggccttgatgggtcctcctggtcttcctggacaaacaggc
ccacctggacctccagggagtccaggtcaaaggggggagattggactgccaggccctcca
ggacatgatggggataagggacctcgaggaaaaccaggagatatggggcccgctggccct
cagggacccccaggaaaagatgggcctccgggaatgaagggagagaccggacccccaggg
agccctggggagaaaggggagacaggacaagcaggcccccagggtctagacggcccaact
ggggagaaaggagaaccaggtgacgaagggaggcccggagcaacaggattacctgggccc
atcgggctcccaggattcacaggagagaaaggagaagctggagagaaaggtgacccagga
gcagaggttcccgggccaccagggccagaggggcctccaggacctccgggcctccaaggt
gttcctggaccaaagggagaagcaggcctggatggctccaaaggagagaagggttcccag
ggagaaaaaggagacncggggcctctgggattgcctggtactccaggaccaattggggtt
ccaggcccagctggaccaaagggcgagaggggcagcaaaggagacccagggatgacagga
ccaacgggagcagcagggcttcctggtttacacggaccacccggggacaaaggaaaccgg
ggggagagggggaagaaaggctctagagggcctaaaggggataaaggggaccaaggagcg
cctggactagatgccccctgcccgctgggagaagatggcttaccagtccaaggctgctgg
aacaagtga
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