Atta cephalotes (leaf cutting ant): 105620263
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Entry
105620263 CDS
T04923
Name
(RefSeq) LOW QUALITY PROTEIN: poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
acep
Atta cephalotes (leaf cutting ant)
Pathway
acep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105620263
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acep03019
]
105620263
Enzymes [BR:
acep01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
105620263
Messenger RNA biogenesis [BR:
acep03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
105620263
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
Motif
Other DBs
NCBI-GeneID:
105620263
NCBI-ProteinID:
XP_012057158
UniProt:
A0A158NI00
LinkDB
All DBs
Position
Unknown
AA seq
582 aa
AA seq
DB search
MEVTSSNFQDVLNELDSIIKDATFLSIDGEFTGLIVGPDGGQFDTPAQYYSKIRAGSMNF
LLMQFGLSVFTYHSDTHKYSQRSYNFYVFPKPINRQVTDTRFMCQSSSLIFLANKDFDFN
KLFKHGIPYLTASDEEKLVKRLEEKRKMKEESYIIPITDTDKPQIEEICSRIENFLASDA
KELTIDHCNGFMRRLVYQEARIRWPNKVIIENKMENGWQCLLVLRAGTKEEEEERENQKQ
EKEKLEVKQAVGLSNLLKKIVESEKIIVGHNMLLDLCHIVHQFFTSLPKDYLEFKTLLHG
LFPNLLDTKVICQSQHFKELVGSSNLNLLIDTVSKPPFSIPDIENVEGRSYSMSKEKYHE
AGYDAYITGLCFIALSNYLGQXQYIRYNISGKLQHIENATVLANSPLLYPFLNKIPVPRL
KDFPYINLVGKDPNPSREHVFHLTFPKEWKHMDIIQLFIPFGGGYISWLSDTSAYVGLYR
RDQAGIALTSLSKETVYKIQTYTEHQATLQASVSPEDRKRKLSPSKKDMKDDETSTTNGV
KPPEDDDDEWQVATGKRRKKRKEQTTTVVASKKAFEENDAWN
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgacgagctcaaactttcaggatgtgctgaatgaattggatagcatcataaaa
gacgctacatttcttagtattgacggcgagttcaccggtcttattgttggtccagatgga
ggccaatttgatacgccggctcagtattattccaagatccgagcgggatcgatgaacttt
ctgctgatgcagtttggtctatccgtcttcacataccactcagatacgcacaaatattca
caacgttcttataacttctatgtgtttcctaaaccgataaatcgccaggttacagacact
agattcatgtgccagtcgtcgtctttaatatttctggcaaataaagattttgacttcaat
aagctattcaagcacggcataccttatctcactgccagtgacgaggagaaacttgtcaaa
cgcttggaggagaaacggaaaatgaaagaggagagctacataattccaataacggatact
gataaacctcaaatagaagaaatatgttctagaatagagaattttcttgcctcagatgca
aaagagttgacgatagaccactgtaatggttttatgagaagactggtatatcaggaggca
cggatcagatggcctaacaaagtaataattgaaaacaaaatggagaatggctggcaatgt
cttttggtgctaagggcaggtaccaaagaggaagaggaagaaagggaaaatcagaagcaa
gaaaaggaaaaactagaagttaaacaagctgtaggactcagcaatctgctgaaaaaaatt
gtagaatctgaaaaaataatagtaggtcataacatgctgttagatctgtgtcatattgta
catcaattttttacatctttgccaaaggactatttagaattcaagaccttgcttcatggt
ttgttccctaatttgttagatacaaaagtcatctgtcaatcacaacattttaaagaactt
gtggggtcgtcgaacttgaacttattaatagacactgtgagcaagcctcctttttccatt
cccgatatcgagaatgtagaaggacgaagttattcgatgtcaaaagaaaaatatcatgag
gcaggatatgatgcgtacatcactggtttatgctttattgcattatccaattatcttggt
cagtaacaatatatcaggtacaatatttcaggcaaattacaacacattgaaaatgcaacg
gtattagcgaattcaccgttactttatccttttcttaacaaaattcctgtaccaagactg
aaagactttccatatataaatttggtaggaaaagatccaaatcctagcagagaacacgtg
tttcaccttacattccccaaagaatggaaacacatggatatcattcaactctttattcca
tttggaggcggatacatttcatggttatccgacacatccgcatacgtaggcttatatcgt
cgtgatcaggccggtatcgcgttgacaagtttatcaaaggaaactgtatacaaaatacag
acatatacagaacatcaagccaccttgcaagccagtgtctctcctgaggatcgcaaacga
aaattatcaccatcaaagaaggatatgaaggatgacgagacatcgacgacaaatggcgtg
aagccaccagaggacgatgatgacgagtggcaagttgctacgggtaaaagacgcaaaaaa
cgcaaggagcaaacgactaccgtcgtagccagcaagaaagctttcgaggaaaacgacgct
tggaactaa
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