Achromobacter sp. 77: H4P35_13505
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Entry
H4P35_13505 CDS
T08458
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
acho
Achromobacter sp. 77
Pathway
acho03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
acho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
H4P35_13505 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acho03400
]
H4P35_13505 (ligD)
Enzymes [BR:
acho01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
H4P35_13505 (ligD)
DNA repair and recombination proteins [BR:
acho03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
H4P35_13505 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UDG78267
LinkDB
All DBs
Position
complement(2922710..2925232)
Genome browser
AA seq
840 aa
AA seq
DB search
MADSLKKYREKRNFQVTSEPAGGGEANEDARAFVIQKHWASRLHYDFRLELDGAMKSWAV
PKGPCYDPAVKRMAVQVEDHPIAYNQFEGQIPEGQYGAGKVIIWDEGKWMPVGDPRKGYR
DGHLKFDLQGVKMQGRWALIRLKGKESDKQPPWLLIKDRDAFARPEREFSVVDEMPDSVV
PLRAAKAPSPDRSENQPEPSTDGQRALPGVAADLPAHLKPQLATLVDGVPHHAPDWLYEM
KFDGYRLVVRIEGDDVRLYTRNGHDWSAKLPHLVDAFRALPAKWAWVDGEIVMLDREGIP
NFQALQNAFDGERTQDIVFYAFDLPFIGQRDLRQEPLTVRRALLQQLMDTTEDDHLRFSE
ALEAAPSDLVATACKMGLEGIMAKRLSSPYVSRRTNTWVKVKCARRQEFAIVGYTAPKGS
RAGLGALLLAVTEQDGSLRYAGKVGTGFDDASLVSLQKRLASIETDKKPVANAPAAGGVR
WVKPELIAEVSFGEWTGGGHIRHSVFRGLRQDKPVRAISREKAVPVKDIEGDAGATRRAG
KAAPATKASRAKGGKLTNPDRVIDPSTKLTKLDLARYYALVAPLMLEHLKGRPVSFLRAP
AGIQGEFFFQKHLEAAMPGVKSLPAKLDPDHPPLLEVPTAEAILSAVQMNVVEFHTWNAV
KTSIGKPDRMLFDLDPGEGVQWPAIQQAANLVRVLLEEIGLKAWLKTSGGKGLHVVVPLR
KQYDWDTVKRFSQVIVQHLARTLPQLFVAKSGPKNRVGKIFADYLRNGFGATTVCAWSAR
ARPGLGVSVPVKWEELDKLTGGAHWTIQDIHARLDAGNTPWDDYAPQSLAPAMSAMEFEP
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atggccgattcgctcaagaagtaccgcgaaaagcgcaactttcaagttacctcggaaccg
gctggcggcggcgaggcgaacgaggacgcgcgcgccttcgtcatccagaagcattgggcg
agccggctgcattacgacttccgtctggaactggacggcgccatgaagagctgggcggtg
cccaaggggccttgctacgacccggccgtcaaacgcatggcggttcaggtcgaggaccat
cccattgcttacaaccagttcgaggggcagattcccgaaggccagtacggcgcgggcaag
gtcatcatctgggacgaaggcaaatggatgccggtgggcgacccgcgcaagggctatcgg
gacggtcacctgaagttcgacctgcagggcgtgaagatgcagggcaggtgggcgctgatc
cgcttaaagggcaaggaaagcgacaagcagccgccctggttgctcatcaaggatcgcgat
gcgttcgcccggccggagcgggagttcagcgtggtggacgaaatgcccgacagcgtggtc
ccgctgcgcgcggccaaagcgccatccccagatcggtccgaaaaccaacctgaaccttcg
accgacggccaacgcgccttgcccggcgtggccgccgatttaccggcgcatctgaaacct
cagctcgccacgctggtggacggcgtgccccaccatgcgccggactggctgtacgaaatg
aaattcgacggctaccggctggtggtgcggatcgaaggcgacgacgtgcgtctttatacc
cgcaacggccacgactggagcgccaagctgcctcatctggtcgacgcgtttcgcgcgttg
cctgccaaatgggcctgggtggacggcgaaatcgtgatgctcgaccgcgagggcattccg
aatttccaggcgctgcagaacgccttcgacggcgagcgcacgcaagatatcgtcttctat
gcctttgatcttcctttcatcgggcagcgggacctgcgccaggaacccctgacggtgcgc
cgggcgctgctgcagcaactgatggacaccaccgaagacgaccatctgcggttcagcgag
gccctggaggccgcgccgtcggatctggtggcgacagcctgcaagatggggctggaaggc
atcatggccaagcgcctgtcctcgccctatgtgtcgcgtcgcacaaatacctgggtcaag
gtcaaatgcgcccgtcgccaggaatttgccatcgtcggctacacggcgccgaagggcagc
cgcgctgggctgggggcgctgctgcttgccgtgaccgagcaggatggcagcctgcgctat
gccggcaaggtgggcacggggttcgatgacgccagcctggtgtccctgcaaaagcgcctg
gcgtccatcgagaccgacaagaagcctgtcgcgaacgcgcccgccgcgggtggcgtacgt
tgggtaaagcccgaactgattgcagaggtgtcgtttggcgagtggacgggcggcggacac
atccgtcattctgtctttcgaggactgcggcaggacaagccggtacgggccatttccagg
gagaaggcagtgccagtcaaagacatcgagggcgatgcgggcgcgaccagacgggccggc
aaagccgcgcccgccaccaaggccagccgcgccaagggcggcaagctcaccaatccggat
cgcgtcatcgatccgtccaccaagctcaccaagctggacctggcacgctattacgcgctg
gtggcgccgctgatgctggagcacctgaaggggcgcccggtgtcgtttctgcgcgcgccg
gccggcatccagggcgaattcttcttccaaaagcaccttgaagccgcaatgccgggcgtg
aaatccctgccggccaagctcgacccggaccatccaccgctgctcgaagtgcccacggcc
gaggccatcctgtccgcggtgcagatgaacgtggtcgaatttcacacctggaacgcggtc
aagacgtccatcggcaagccggatcggatgctgttcgacctggacccgggcgagggcgtg
cagtggcccgcgatacagcaggctgcgaacctcgtgcgcgtgctgctggaagaaatcggg
ctgaaagcgtggctcaagaccagcggcggcaagggcctgcacgtggtcgtgccgctgcgc
aaacagtacgactgggacacggtgaagcgcttttcgcaggtgatcgtgcagcatctggcg
cggacgctaccgcaactgtttgtggccaagagcggaccgaagaaccgggtcggcaagatt
tttgcggactacctgcgcaatggatttggcgcgaccaccgtatgcgcctggtcggcgcgg
gcgcgtcccggtctgggcgtatcggtgcccgtcaagtgggaagagctggacaagctgacg
ggcggggcgcactggacgatccaggatatccacgcccggctggacgcgggcaacacccca
tgggacgattacgcgccgcagtccctggcgcccgccatgtccgccatggagttcgagcca
tga
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