Acidovorax carolinensis P3: CBP35_02785
Help
Entry
CBP35_02785 CDS
T04998
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
acis
Acidovorax carolinensis P3
Pathway
acis03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
acis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CBP35_02785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acis03400
]
CBP35_02785
DNA repair and recombination proteins [BR:
acis03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CBP35_02785
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CBP35_02785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_inter
AAA_29
SMC_N
nSTAND1
AAA_21
AAA_16
RsgA_GTPase
AAA_22
AAA_18
AAA_23
AAA_25
UvrA_DNA-bind
Viral_helicase1
DnaJ_CXXCXGXG
NACHT
DUF4350
nSTAND3
AAA_33
Anti-TRAP
SbcC_Walker_B
RNA12
Motif
Other DBs
NCBI-ProteinID:
ART54232
LinkDB
All DBs
Position
604172..610165
Genome browser
AA seq
1997 aa
AA seq
DB search
MTQGLIRIRGARQHNLKNLDLDIRTGELTVVTGPSGSGKSSLVFDTLYAEGQRRYVETFS
AYARQFLDRMDKPAVDKVEGVPPAIAIDQTNPVRSSRSTVGTMTELNDHLKLLFARAGQL
FDKQTAQPVRHDTPETIYAELQRRSAAAGDPRIVLTFPVELPANTSAEQVEQWLSASGFT
KVQAEREVATPTGPRKVLDVVADRFRLGNAEKVRVIEAIEVALKRGTGRLNVYRMVDEGE
PELWRFSTGLHCPDSDLRYSDPIPSAFSFNSAVGACDSCRGFGRVIGVDYGLVIPNDKLT
LRAGAIKTIQTPAWKEAQDDLMRHAETAGIPRDTPWNKLTDEHKKWVINGSPNWNGKWNQ
QWYGIKRFFEYLESKAYKMHIRVLLSKYRSYTPCPTCAGARLKTESLLWRIGRKEDADAA
LEPPLRRAAPSSGSPLEGQGGHDRAERGGQQFQRFMPEGVQWSREQLEALPGLCLHDLML
LPIDRLRAFFARMQLPVGDDAKGDAQAKTGEAQALRLLHDEITTRLKYLCDVGIGYLTLD
RQSRTLSGGEVQRINLTTALGTSLVNTLFVLDEPSIGLHPRDMHRITEAMLRLRDAGNTL
VVVEHDPAVMLAADRMIDMGPGPGRLGGQIVFDGTTADLRKADTLTGAYLGGRKQVGFGF
KRMVTESTPRLILEGAREHNLQDVTVEFPLQRLVTVTGVSGSGKSSLIQDVLAPALLRHF
GKATDAPGAHDRLLGADHLSDVVFVDQSPIGKTARSNPVSYVGAWDSIRELFAVAPLSRQ
RSYTAAKFSFNSGDGRCPTCGGSGFEHVEMQFLSDVYLRCPDCDGKRYRPEILEITIERG
TEGPSGSRRTLNVADVLALTVAEAAAVFANDRDVIRALQPIVDVGLEYVALGQPVPTLSG
GEAQRLKLAGFLAEAARSASKSRQTVARKGTLFLFDEPTTGLHFDDIAKLMRALRKLIDA
GHSLIVIEHNLDVIRASDWLIDLGPEGGDAGGLIVAEGTPEDVRAHATSHTGQALRDYEL
ALGVSGHSVHEKASVLRKQERLALMDKAPAAKNAIEIVNAKEHNLKNLSVDIPRGKFNVV
TGVSGSGKSTLAFDILFNEGQRRYLESLNAYARSIVQPAGRPEVDAVYGIPPTVAIEQRL
SRGGRKSTVGTTTEVWHFLRLLYVKLGTQHCTKDGAAVQPQTPESIAAQLLTQFRGQHIG
LLAPLVMNRKGVYTELADWARPRGHTHLRVDGNFLPTTNFPRIDRFKEHTIELPVASLDV
SPENEAALRTALADALTHGKGVVHVLSDIASLRAAMESGQPTAGIGHLQAFSTKRACPVC
ATSYAELDPRLFSYNSKHGWCPDCVGTGVKLTKDQRKMFDDSVQDDKEKGREQTFAEPEV
EDLADTACPSCSGTRLNATARAVRFAGVGITDIAALSVTDVRRWIETLRIEGGMTAREAD
IARDLVPEIQSRLEFLEEVGLGYLTLDRGAPTLSGGEAQRIRLAAQLGSNLQGVCYVLDE
PTIGLHARDNQILLNALHKLGDKGNTLVVVEHDEDTIRRADHIIDIGPSAGKRGGRLVAQ
GSVADITGSEDSQTGRYLLHAMKHPLQLRRSMAPGEVSAEATAAFAQAEAAAPTGRQSAA
VKKRAAQAAALAADALTEAKERAAMRWLTVHGAQLHNLQNVTATVPLHRLVAVTGVSGSG
KSTLARDVLLANVQAWVQQRSTKAGRDAMDAGKAPPLVGCTGLSGFESIDRVLEVDQTPI
GKTPRSCPATYIGFWDTIRKLFAETLEAKARGYAAGRFSFNTGEGRCPSCEGAGVRTIEM
SFLPDVKVPCETCHGARFNPETLAVTWRGKSIGDVLQMEVDEAVGFFATMPSIAHPLQLL
KDVGLGYLTLGQPSPTLSGGEAQRIKLVTELTKVRDEVGRRGQKAPHTLYVLDEPTVGLH
MADVDKLIRVLHRLVDGGHSVIVIEHDLDVIAEADWILDLGPEGGNAGGRIVAAATPEDV
VAAGTHTGKALAAVLAR
NT seq
5994 nt
NT seq
+upstream
nt +downstream
nt
atgacccagggactgatccgtatccgcggcgcacgccagcacaacctcaagaacctggat
ctggacatccgcaccggcgaactcacggtggtcacgggtcccagcggctcgggcaagtcg
agcctcgtgttcgatacgctctatgccgagggccagcgccgctatgtcgagaccttcagc
gcctatgcgcgccagtttctcgaccgcatggacaagcctgccgtggacaaggtcgagggc
gtgcccccggccattgccatcgaccagaccaaccccgtgcgctccagccgctccaccgtg
ggcacgatgacggagctgaacgaccacctgaagctgctgttcgcccgtgcaggccagctg
ttcgacaagcagacagcgcagcccgtgcggcacgacacgccagagaccatttatgcggag
ctgcagcggcgcagcgccgctgcgggcgacccgcgcatagtgttgaccttcccggtcgag
ctgcctgccaacacctcggccgagcaggtcgagcaatggctgtctgccagcggcttcacc
aaggtgcaggcggagcgcgaagtggccacgcccactggcccacgcaaggtgctggatgtg
gtggcggataggttccgcctgggcaacgctgaaaaggtgcgcgtgatcgaggccatcgag
gttgcgctcaagcgcggcacggggcggctcaacgtgtatcggatggttgacgagggcgaa
cccgagctgtggcgcttctccaccggcctgcactgccccgacagcgacctgcgctacagc
gaccctattccgtcggccttttcgttcaactccgccgtgggcgcgtgcgacagctgccgg
ggctttggccgcgtgatcggggtggactacggcctggtcatccccaacgacaagctcacg
ctgcgggcgggcgccatcaagaccatacagaccccggcctggaaagaggcgcaggacgac
ctcatgcgccacgccgagacggccggcatcccgcgcgacacgccctggaacaagctgacc
gacgagcacaaaaagtgggtgatcaacggctcgccgaactggaacggcaagtggaaccag
cagtggtacggcatcaagcgcttttttgaatacctggagagcaaggcctacaagatgcac
atccgcgtgctcttgtccaaataccgcagctacacgccgtgccccacctgcgcgggcgca
cggctcaagaccgaaagccttttatggcgcattggccgcaaggaagatgccgatgccgcg
ctggagccgccgctgcgccgggccgccccaagcagcggcagcccccttgaggggcaggga
ggacacgacagggccgagcgtgggggccaacagttccaacgcttcatgcccgagggtgtg
caatggtcgcgtgagcagttggaagcgttgcccggcctgtgtctgcacgacctgatgctg
ctgcccattgaccgcctgcgcgcgttctttgcacgcatgcagttgccggtgggtgacgac
gcgaaaggcgacgcgcaggcgaaaacaggagaagcacaagcgcttcggctgctgcacgac
gaaatcaccacgcgcctcaaatacctgtgcgacgtgggcattggctacctcacgctggac
cgccaaagccgcacgctcagcggcggcgaggtgcagcgcatcaacctcaccacggccctg
ggcaccagcctggtcaacacgctgttcgtgctcgacgaacccagtatcggcctgcacccg
cgcgacatgcaccgcatcaccgaggccatgctgcgcctgcgcgatgcgggcaacacgctg
gtggtggtggaacacgacccggccgtgatgctggcggccgaccgcatgatcgacatgggc
cccggccccggtcgcctgggcgggcagatcgtgttcgacggcaccacggccgacctgcgc
aaggcggacacgctcacgggtgcctacctgggtgggcgcaagcaggtgggctttggcttc
aagcgcatggtgacggaatcgacgccgcgcctcatcctggaaggcgcgcgcgagcacaac
ctgcaggatgtgacggtggagttcccgctgcagcgcctggtcaccgtcaccggcgtcagc
ggctctggcaagtccagcctgatccaggatgtgctggcccccgcgctgctgcgccacttt
ggcaaggccacggatgcaccgggcgcgcacgaccgcctgctgggcgcggaccacctgtcg
gacgtggtgtttgtggaccagtctcccattggcaaaacagcccgctccaaccccgtgagc
tacgtaggcgcgtgggacagcatccgcgagctgttcgccgtggcgcccctgtccaggcag
cgcagctacaccgctgccaagttcagcttcaacagcggcgacgggcgctgccccacctgc
ggcggctcgggcttcgagcatgtggagatgcagttcctctctgacgtgtacctgcgctgc
ccggactgcgatggcaagcgctaccggcccgagattctggagatcaccatcgagcggggt
accgaagggccctccggtagccgccggacgctgaacgtggccgatgtgctggcgctcacc
gtggccgaggcggctgccgtgtttgccaacgaccgcgatgtgatccgcgcgctgcagcct
attgtggatgtggggctcgaatatgtggcgctgggccagcctgtgcccacgctcagcggc
ggcgaggcgcagcgtttgaaactggcgggtttcttggccgaggccgcgcgcagcgcgtcc
aaatcgcgccagacggtggcgcgcaaaggcacgctgttcctgttcgacgaacccaccacg
ggcctgcactttgacgacatcgccaagctcatgcgcgcactgcgcaagctcattgatgcg
gggcactcgctcatcgtcatcgagcacaacctggacgtgatccgcgcgagcgactggctt
atcgatctggggccggagggcggcgatgcaggcggcctgatcgtggccgagggcacgccc
gaagatgtgcgggcccatgccacctcgcacaccggccaggcactgcgcgactacgaactg
gcgctgggcgtgagcggccactcggtgcatgaaaaagcttctgtgctacgaaaacaggag
cgtttagcgcttatggataaagcgccagcggccaaaaacgccatagaaatcgtcaacgcg
aaggaacacaacctcaagaacctgagcgtagacattccacgcggcaagttcaacgtggtg
acgggcgtcagcggatcgggcaagtccacgctggcgttcgacatcctgttcaacgaaggc
cagcgccgctacctcgaatcgctcaacgcctacgcgcgttccatcgtccagcccgccggt
cggcccgaggtggatgcggtgtacggcataccgcccaccgtggccatcgagcagcgcctg
tcgcgcggcgggcgcaagtccaccgtgggcaccacgaccgaggtgtggcacttcctgcgt
ctgctgtacgtcaagctcggcacccaacactgcaccaaagacggcgctgccgtgcagccg
caaacgcccgagagcattgccgcccagctgctcacccagttccgggggcagcacatcgga
ctgctcgcgccgttggtgatgaaccgcaagggcgtgtacaccgagctggccgactgggcg
cggccgcgcggccacacgcacctgcgcgtggatggcaacttcttgcccaccaccaacttc
ccgcgcatcgaccgcttcaaggagcacaccatcgagctgccggtggccagcctggatgtg
tcgccagagaacgaagccgcactgcgcaccgcgctggccgatgcgcttacgcacggcaag
ggcgtggtgcatgtgctgagcgacattgccagcctgcgcgccgcgatggaaagcggccag
cccaccgcaggcatcgggcatctgcaggcgttctccaccaagcgcgcctgccccgtgtgc
gccaccagctatgccgagctggacccgcgcctgttcagctacaacagcaagcacggctgg
tgcccggactgcgtgggcacgggcgtcaagctcaccaaagaccagcgcaagatgtttgac
gattcggtgcaggacgacaaggaaaaaggccgcgagcagacctttgccgagcccgaggtg
gaagacctggccgacaccgcgtgcccgagctgcagtggcacacgcctgaacgccacggcg
cgcgccgtgcggtttgcgggcgtgggcatcaccgacatcgcggccctgtccgtgacggac
gtgcgccgctggatcgagaccctgcgcatcgaaggcggcatgacggcccgcgaggccgat
atcgcccgcgacctggtgcccgagatccagagccgcctcgaatttctggaagaagtgggc
ctgggctacctcacgctggaccggggggcgcccacgctcagcggtggcgaggctcagcgc
attcgcctggccgcgcaactgggcagcaacctgcagggcgtgtgctacgtgctcgacgag
cccaccatcggcctgcatgcgcgcgacaaccagatattgctcaacgccctgcacaagctg
ggcgacaagggcaacacgctggtggtggtggagcacgacgaagacaccatccgccgcgcc
gaccacatcatcgacattggccccagcgcgggcaaacgcggcgggcgcctggtggcgcaa
ggcagcgtggcagacatcacgggctctgaagattcacaaaccggccgctacctgctgcac
gccatgaagcacccgctgcagctgcgccgcagcatggcgcccggcgaggtgagcgccgag
gccacggcggccttcgcccaggccgaggcggcagcgcccacgggccgccaaagcgccgcc
gtcaagaagcgcgccgcccaggccgctgcgctggccgccgacgcactgaccgaggccaag
gagcgcgccgccatgcgctggctcacggtgcacggcgcgcagttgcacaacctgcagaac
gtgacggccaccgtgccgctgcaccgcctggtggcggtgacgggcgtgagtggctcgggc
aagtccacgttggcgcgtgacgtgctgctggccaacgtgcaggcctgggtgcagcagcgc
agtaccaaggccgggcgtgatgccatggacgctggcaaggcgccgccactggtcggttgt
acgggcctgtcgggcttcgagagtatcgaccgcgtgctcgaagtggaccagacacccatc
ggcaaaacgccgcgttcgtgccctgccacctacatcggcttctgggacaccatccgcaag
ctgtttgccgaaacgctggaggccaaggcacgcggctatgccgccgggcgcttcagcttc
aacaccggcgaaggccgctgccccagctgcgaaggcgcgggcgtgcgcaccatcgagatg
agcttcttgcccgatgtgaaggtgccctgcgagacctgccacggcgcgcgcttcaacccc
gagacgctggccgtgacctggcgcggcaagagcattggcgatgtgctgcagatggaggtg
gacgaggcggtgggcttctttgccaccatgcccagcatcgcgcacccgctgcaactgctc
aaagacgtgggcttgggctacctcaccctgggccagccgtcgcccacgctgagtggcggc
gaggcgcagcgcatcaagctcgtgaccgagctcaccaaggtgcgcgacgaagtgggccgc
cggggccagaaggcgccacacacgctgtatgtgctggacgagcccaccgtgggcctgcac
atggccgacgtggacaagctcatccgcgtgctgcaccgcctggtggatggcggccacagc
gtgatcgtcatcgagcacgacctggatgtgattgccgaggccgactggatcctggacctg
gggcccgagggcggcaatgccggtggccgcatcgtggccgccgccacgcccgaggatgtg
gtggccgctggaacgcacacgggcaaggcgctggcggcggtgctggcgcgttga
DBGET
integrated database retrieval system
