Actinoalloteichus sp. AHMU CJ021: C1701_04545
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Entry
C1701_04545 CDS
T05306
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
acta
Actinoalloteichus sp. AHMU CJ021
Pathway
acta03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
acta00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
C1701_04545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acta03400
]
C1701_04545
Enzymes [BR:
acta01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
C1701_04545
DNA repair and recombination proteins [BR:
acta03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
C1701_04545
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AUS77752
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All DBs
Position
complement(1165656..1166564)
Genome browser
AA seq
302 aa
AA seq
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MPEDRVSVVVGDRRLRLTNLGKILYPEAGVSKRDVIDYYARVAPVLLGHLRGRPVTLRRY
PDGVDGQSFFEKNASRSAPDWVPTVEIPTPGSSKGAETTEFVLVDEVPTLVWLANLAALE
LHVPQWRVTPDGARDTPDLLVFDLDPGPPATVVECCRVAELLRVELEADGLAPRPKTSGS
KGLQLYVPVTVAEADRTSRYARELADRLAQRHPEAVVSTMTKARRVGRVLIDWSQNNPAK
TTVAPYSLRARAQATVSTPVTWDEVESCAAPEDLVFTHGMIPDRLDRYGDLFEEPPGEHP
RL
NT seq
909 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgaggaccgggtcagcgtcgtcgtcggcgaccgccgcctccgcctgacgaacctc
ggcaagatcctctaccccgaggcgggggtgagcaaacgggacgtcatcgactactacgcc
cgggtcgcacccgtcctgctcgggcacctccggggacgaccggtgacgctgcgccgctac
ccggacggcgtcgacgggcagtcgttcttcgagaagaacgcctcccggtcggccccggac
tgggtgcccaccgtcgagatccccaccccgggcagcagcaagggagcggagacgacggag
ttcgtcctggtggacgaggtaccgaccctggtgtggctcgccaacctggccgccctcgaa
ctgcacgtcccccagtggcgggtcacccccgacggggcgcgcgacacccccgacctgctc
gttttcgacctcgaccccggcccgcccgcgacggtcgtcgagtgctgccgggtggcggaa
ctcctccgcgtcgaactggaggcggacgggctcgccccccggcccaagaccagcgggtcg
aaggggctccagctctacgtgccggtcaccgtggccgaggcggaccggacctcccggtac
gcgagggaactcgccgatcggctggcccagcgccatccggaggccgtggtgtcgacgatg
accaaggccaggcgggtgggccgggtgctcatcgactggagccagaacaacccggccaag
acgacggtggcgccctactcgctccgcgcccgcgcccaggccaccgtgtccaccccggtc
acctgggacgaggtggagagctgcgccgcgccggaggacctggtcttcacccacggcatg
atcccggaccggctcgaccggtacggggacctcttcgaggagccgcccggcgagcacccc
cggctgtag
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