Anabaena cylindrica: Anacy_2945
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Entry
Anacy_2945 CDS
T02435
Name
(GenBank) RNAse R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
acy
Anabaena cylindrica
Pathway
acy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Anacy_2945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acy03019
]
Anacy_2945
03016 Transfer RNA biogenesis [BR:
acy03016
]
Anacy_2945
Enzymes [BR:
acy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Anacy_2945
Messenger RNA biogenesis [BR:
acy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Anacy_2945
Transfer RNA biogenesis [BR:
acy03016
]
Prokaryotic type
tRNA degradation factors
Anacy_2945
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
Motif
Other DBs
NCBI-ProteinID:
AFZ58367
UniProt:
K9ZII6
LinkDB
All DBs
Position
3356780..3359128
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AA seq
782 aa
AA seq
DB search
MEFSIATLLANFTDDKLVARKVLEKKLGCEDEDSLEKLHIALEVLEKIGLLVKERGKYRR
VSEEGLIEAKLRCSSKGFCFAIQDVEGSEDIYIRESYLSNAWNGDRVLVRVLKEGSRRRS
PEGEVKLILERSNHTLLARIKQVEGGFRAVPLDDRLLFELKLLTNGLKLAEAIDHLAHVE
VLRYPLAQYPPLGRVVQILGSDAEAAADIDLVTCKHDLSRTFSDNILDAAAKLPKKLLKA
DLKNRVDLRSLFTITIAGVNGDDKVVENAFSLEKTPSEPWRLMVHITDLSHYIQADEALD
REALKRGRSVYLGELILPMLPEAVAERCSLVSGSDRLALSFVITIDPQSGKVLEWEIQPS
VIKVDTSVSKQQAEAILSGDAPKMSAETIQMLHDLATLAKAAKQARLSRGSLQLNLPPSQ
NPYYDEGLMGAVVVNEVPVRSLLSELVLLVNELIAEHLNALGVPAIWRVQGTPDPEDVQE
MLKLAMNLGVELTLDPELDIQPLDYQHLTRAFAESPSEQVLTYLLQDTLKPSVYNTTRGL
HFGLALPQYVHFSAPLRRYPDLLMQRVYHALLEYGRDRRNTRVKERVNLRHSSSHEEINW
NVLPPELQQELQSDLTRVLVQINDREKEVQEAEADLAGLQKAQLMKQRIGQVFPGVITGV
QSYGFFVEIEVPATESEIGSQLSTPLRVEGLVHVSSLKDDWYEYRARQQALFGRKNRASY
RLGDRVAVQVKSVDYYRQQIDLVTVGPDGVVKGLGISNEDTSDIYSPNNMESFDLDPYSE
DE
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atggaattttcaatcgctacacttcttgccaatttcacggatgataaattggtagctcgt
aaggttttggaaaagaaactgggttgtgaggatgaagacagtttagaaaaacttcacatt
gctttggaggtgctagaaaaaattgggttgttggtcaaggaacggggtaagtatcgtcgt
gtatcggaagaggggctaattgaagctaaactccgttgctctagtaaaggcttttgcttt
gctattcaagatgtggaaggctctgaggatatttatatccgtgaaagctatctgagtaat
gcctggaatggcgatcgcgttttggtcagagttctcaaggaaggtagtcgccgacgttct
cctgaaggtgaggtaaagctgattctggagcgttccaatcacactttactagcacggatt
aaacaagtagaaggggggttccgtgctgttcctttagacgatcgcttgctgtttgaattg
aaactgcttacaaacggcttgaaattggctgaagctatagaccacctagcccatgtagaa
gtcttgcgttatcctctggctcagtatccacctttgggtcgggttgtacaaatccttggt
agtgatgcggaagctgctgctgatatagatttggtaacttgtaagcatgatttatcacgt
actttctcggataatatcctggatgcagcagctaagttgcccaaaaagttactgaaagca
gatttaaaaaaccgcgtagatttacgtagtttgttcaccatcacgattgcgggggtaaat
ggtgacgataaagtagtagaaaatgcctttagcttggaaaaaaccccaagcgaaccttgg
cgattgatggttcatataactgatttatctcactacattcaagctgatgaagccctagat
agggaggcactcaagcggggacggtcagtttatctgggagaattaattttgccgatgttg
ccagaagcagtggctgaacgctgttctttggtatcgggtagcgatcgcctagctctctct
tttgtgatcacaattgatccccaatcgggaaaagtgctggagtgggaaattcaacccagc
gtaatcaaagtagacacatctgtaagcaaacaacaagcagaagcaatactcagcggtgat
gcacccaaaatgtctgctgagactatccagatgttacatgacctagcaaccctagccaaa
gcagctaaacaagctcgattatctcgcgggagcttgcaattaaatctgccaccaagccaa
aatccttactatgatgaaggcttaatgggcgctgtggtagttaatgaagtacccgtgcga
tcgctcctctcagagttagtactgttggtgaatgaactaatagcagaacatctcaacgct
ttgggagttcctgccatttggcgagtccaaggcacacctgatcctgaagatgttcaggaa
atgctcaaactagcgatgaatttgggtgtggaattaacacttgatccagagttagacatt
caacccctcgattatcaacatttaactagagctttcgctgagtcaccatctgagcaagtt
ctcacctacctgttacaggataccctcaagccatctgtatacaacacaactagaggatta
cactttggtttggctctaccacagtacgtccactttagcgcccccctacggcgttaccca
gatttactgatgcaacgggtatatcatgccttattagaatacgggcgcgatcgccgcaac
acccgtgtcaaagagcgtgtcaacctgcgccattcttcctcccatgaagaaattaactgg
aacgttctccccccagagttacaacaagaactccaaagcgacttaactagagtactcgtc
cagattaacgacagagaaaaagaagtccaagaagccgaagctgatttagcaggactacaa
aaagcccaactgatgaaacagcgcattggtcaagtatttcccggtgtaattactggggtg
caatcctacggcttctttgtcgaaatcgaagttcccgctacagagtcagaaatcggctcc
cagctaagtacacccttacgagtagaaggactagtacacgtcagttcactcaaagatgat
tggtatgaataccgagctagacaacaagctctatttggccgcaaaaatcgcgcttcctat
agattaggcgatcgtgtagccgtacaagttaaaagtgttgattactaccgccagcaaatt
gatttagtcaccgttggccccgatggtgtagtcaaaggcttgggaatcagcaatgaagat
acatcagatatttactcaccaaacaacatggaatcttttgacttagatccctatagtgag
gatgagtaa
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